Citrus Sinensis ID: 006497
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NLV4 | 647 | Flowering time control pr | yes | no | 0.875 | 0.870 | 0.697 | 0.0 | |
| Q9C0J8 | 1336 | pre-mRNA 3' end processin | yes | no | 0.590 | 0.284 | 0.546 | 1e-132 | |
| Q8K4P0 | 1330 | pre-mRNA 3' end processin | yes | no | 0.590 | 0.285 | 0.546 | 1e-132 | |
| Q7RY68 | 660 | Polyadenylation factor su | N/A | no | 0.572 | 0.557 | 0.442 | 6e-99 | |
| Q9UTN4 | 509 | Polyadenylation factor su | yes | no | 0.710 | 0.897 | 0.393 | 1e-96 | |
| P0CS47 | 713 | Polyadenylation factor su | N/A | no | 0.642 | 0.579 | 0.406 | 7e-95 | |
| P0CS46 | 712 | Polyadenylation factor su | yes | no | 0.572 | 0.516 | 0.434 | 6e-94 | |
| Q4I7X1 | 612 | Polyadenylation factor su | yes | no | 0.508 | 0.534 | 0.456 | 6e-93 | |
| Q2TZG4 | 610 | Polyadenylation factor su | yes | no | 0.575 | 0.606 | 0.398 | 1e-89 | |
| Q6BVZ3 | 504 | Polyadenylation factor su | yes | no | 0.643 | 0.821 | 0.380 | 5e-83 |
| >sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY PE=1 SV=1 | Back alignment and function desciption |
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Score = 789 bits (2037), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/624 (69%), Positives = 468/624 (75%), Gaps = 61/624 (9%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK TQRRAVDYTSTVVRY+Q R WQRDSRDRT LQ TPAAA+DMLPTVAY+DNPSTSFA
Sbjct: 52 MRKHTQRRAVDYTSTVVRYIQARTWQRDSRDRTTLQPTPAAAVDMLPTVAYSDNPSTSFA 111
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVH SLNKNRCSINRVLWTP+GRRLITGSQSGEFTLWNGQSFNFEMILQAHD IRSM
Sbjct: 112 AKFVHASLNKNRCSINRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSM 171
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHN+N+MVSGDDGG +KYWQNNMNNVKANK+AHKES+RDLSFC+TDLKFCSCSDDTTV
Sbjct: 172 VWSHNENYMVSGDDGGTLKYWQNNMNNVKANKTAHKESIRDLSFCKTDLKFCSCSDDTTV 231
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDF +C +E SLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWD +SGRELCS HGHK
Sbjct: 232 KVWDFTKCVDESSLTGHGWDVKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELCSLHGHK 291
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N+VL VKWNQNGNW+LTASKDQIIKLYDIR MKEL+SFRGH KDVT+LAWHP HEEYFVS
Sbjct: 292 NIVLSVKWNQNGNWLLTASKDQIIKLYDIRTMKELQSFRGHTKDVTSLAWHPCHEEYFVS 351
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSI HW+VGHE PQ+EI N HDN+VWDLAWHPIGYLLCSGSNDHTTKFWCRNRP D
Sbjct: 352 GSSDGSICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPAD 411
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
RD + QNQGY EQ GR P NF E PG F PGLTRNEGTIPG+G+AMP
Sbjct: 412 NPRDV--LMQNQGYNEQG---FGRQPDNFQPSEASPIPGAFVPGLTRNEGTIPGIGIAMP 466
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP 480
FD+S+QG+ KQPL + P G Q QQHQGHP
Sbjct: 467 -----FDASSQGDHKQPLPGSMALGAPP----LPPGPHPSLLGSGQQQGYQQQQQHQGHP 517
Query: 481 QQMPHLAMPPQNMP--QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPM---PGSLPTPSS 535
QQM L MP NMP QL P SH+P+ HPH +P PM P P S
Sbjct: 518 QQM--LPMP--NMPHHQLPPSSHMPL--HPH-----------HLPRPMQMPPHGHMPPPS 560
Query: 536 HPMS--MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSG 593
PMS MP +GMQG MN P M Q H+M GAP V QG PNS G
Sbjct: 561 MPMSHQMPGSMGMQGGMN---PQMSQSHFM---------GAPSGV------FQGQPNSGG 602
Query: 594 PQMYPQG-GAFNRPQGQMPMMPGY 616
PQMYPQG G FNRPQ M+PGY
Sbjct: 603 PQMYPQGRGGFNRPQ----MIPGY 622
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Plays a role in the regulation of flowering time in the autonomous flowering pathway by decreasing FLOWERING LOCUS C mRNA levels. Required for the negative autoregulation of FCA expression. Acts probably as an RNA 3' end-processing factor. Required for growth and development in plants. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C0J8|WDR33_HUMAN pre-mRNA 3' end processing protein WDR33 OS=Homo sapiens GN=WDR33 PE=1 SV=2 | Back alignment and function description |
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Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 210/384 (54%), Positives = 269/384 (70%), Gaps = 4/384 (1%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +K EL+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVF 381
PGD RD++N+ G E +
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEY 430
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Essential for both cleavage and polyadenylation of pre-mRNA 3' ends. Homo sapiens (taxid: 9606) |
| >sp|Q8K4P0|WDR33_MOUSE pre-mRNA 3' end processing protein WDR33 OS=Mus musculus GN=Wdr33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 473 bits (1216), Expect = e-132, Method: Compositional matrix adjust.
Identities = 210/384 (54%), Positives = 269/384 (70%), Gaps = 4/384 (1%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +K EL+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVF 381
PGD RD++N+ G E +
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEY 430
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Essential for both cleavage and polyadenylation of pre-mRNA 3' ends. Mus musculus (taxid: 10090) |
| >sp|Q7RY68|PFS2_NEUCR Polyadenylation factor subunit 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pfs-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (929), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 252/402 (62%), Gaps = 34/402 (8%)
Query: 2 RKLTQRRAVDYTSTVVRYMQIRM-WQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
R +R DY ++VV YM+ R R S V + +P+ +DMLP A NP+ S
Sbjct: 25 RNRGRRPVTDYGASVVHYMRHRQPRYRGSYAGEVERPSPSYIVDMLPPYARVTNPADSVP 84
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
++ +H+SLNK + IN V WTP GRRL+T S SGEFTLWNG FNFE I+QAHD AIR++
Sbjct: 85 SRHLHSSLNKIKHPINVVRWTPEGRRLLTASSSGEFTLWNGTGFNFETIMQAHDSAIRAL 144
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
V+SH+D+W+VS D G IKYWQ N NNV++ + H + +RDL+F D KF + SDD T+
Sbjct: 145 VYSHSDDWLVSADHDGIIKYWQPNFNNVESIR-GHTDPIRDLAFSPNDTKFVTASDDQTL 203
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KV+DFA + +LTGHGWD KS DWHP++ L+VSG KD LVKLWD ++GR L + HGHK
Sbjct: 204 KVFDFAGGSTDMTLTGHGWDAKSCDWHPSRGLIVSGSKDHLVKLWDPRTGRCLTTLHGHK 263
Query: 241 NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 299
N + + + GN + T+++DQ +++D+R M+++ RGH KD++ L WHP H
Sbjct: 264 NTITKTLFERVQGNCLATSARDQTARVFDLRMMRDIALLRGHEKDISTLTWHPVHSNLLS 323
Query: 300 SGSLDGSIFHWLVG----------------HET------------PQVEIHNVHDNTVWD 331
+G DGS+FH+L+ ++T P +I HD +W
Sbjct: 324 TGGSDGSLFHYLLDEPNTAPDGSVMPIPAVYDTADPSSAPAQPIYPAHKIPYAHDFAIWS 383
Query: 332 LAWHPIGYLLCSGSNDHTTKFWCRNRPG---DTARDKFNMGQ 370
L WHP+G++L SGSND T+FW R RPG ++ D++++G+
Sbjct: 384 LDWHPLGHILASGSNDRITRFWSRARPGEAPESFNDRYHIGE 425
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) |
| >sp|Q9UTN4|PFS2_SCHPO Polyadenylation factor subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pfs2 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 354 bits (909), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 200/508 (39%), Positives = 284/508 (55%), Gaps = 51/508 (10%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
++K RR VDY S + +Y+ R + + V + P I++ P Y N ++S
Sbjct: 10 IQKPMTRRTVDYGSGLSKYIVNRHLRSNRYHIHVPRPNPNQIINLYPPYEYKYNNTSSLC 69
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
K++HTS NK R IN V WTP GRRL+TGS +GEFTLWNG +FNFE+I Q+HD+A+R
Sbjct: 70 TKYIHTSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRCA 129
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WS + W++SGD GG +KY++ N+NNVK + AH+ VRD++F D KF + SDD ++
Sbjct: 130 EWSTDGRWLISGDGGGMVKYFEPNLNNVKIVQ-AHEMEVRDVAFSPNDSKFVTASDDGSL 188
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVW+F EE LTGHGWDVK+VDWHP+K LL SG KD+LVK WD ++G + + HGHK
Sbjct: 189 KVWNFHMSTEELKLTGHGWDVKTVDWHPSKGLLASGSKDNLVKFWDPRTGTCIATLHGHK 248
Query: 241 NMVLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 298
N ++ + +N N++ T S+D +++D+RAMK++ RGH KDV + WHP +
Sbjct: 249 NTIMQASFQKNFGSNYLATVSRDSTCRVFDLRAMKDVRVLRGHEKDVNCVTWHPLYPNLL 308
Query: 299 VSGSLDGSIFHWLVG----------HET--------------PQVEIHNVHDNTVWDLAW 334
+G DGS+ H+ + HE P EI HD +W + +
Sbjct: 309 TTGGSDGSVNHYSLDEPPLLSQQKYHEKHPNVTLSASSYLLYPTAEIPFAHDLGIWSMQY 368
Query: 335 HPIGYLLCSGSNDHTTKFWCRNRPGD--TARDKFNMGQNQGYGEQNAVFAGRMPG----- 387
HP+G+LLC+GSND TT+FW R+RP D + D+ ++G+ Q A+ + R
Sbjct: 369 HPLGHLLCTGSNDKTTRFWSRSRPDDKESTMDRHHLGEEQS----EAMLSQRKAAIEEDD 424
Query: 388 NFPLPEGPTTPGPFAPGLTRNEGT--IPGVGVAMPLSIPSFDSSAQGEQKQP---LSMPL 442
N+ E P T + G +PG+G ++PSF S Q Q Q L L
Sbjct: 425 NYEPDENPLTETLANAHNPQFSGVLNLPGLG-----TMPSFPSPYQHGQPQIPGMLHASL 479
Query: 443 GAPPLPPGPHPSL---LTANQQQGYQQN 467
P S LT+ Q GY QN
Sbjct: 480 SNSYAEPSTQNSFIPGLTSKSQDGYPQN 507
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P0CS47|PFS2_CRYNB Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 348 bits (893), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 170/418 (40%), Positives = 248/418 (59%), Gaps = 5/418 (1%)
Query: 2 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 61
RK+ RR VDY V ++ + + R + P+ ++ LP VA NPSTS
Sbjct: 63 RKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSICD 122
Query: 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV 121
+VHTS+NK R V WTP RRL+TG+ G+FTLWNG SFN+E I Q HD +IRS
Sbjct: 123 YWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRSFT 182
Query: 122 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 181
+SHN +VS D GG IKY+ ++ N+ + H+E+ D+S+ D +F +C DD VK
Sbjct: 183 YSHNGQALVSADKGGTIKYFTPHLTNIHGFQ-GHREACHDVSWSPNDERFVTCGDDGLVK 241
Query: 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
+W + +EERSL+GHGWDV+ VDWHPTK L+VSG KD LVK WD ++G++L + H K+
Sbjct: 242 IWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSSKS 301
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301
+ +W+ +G+ V TA +D +I+L+DIR +ELE +GH K+V + WHP H VSG
Sbjct: 302 TINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLVSG 361
Query: 302 SLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR- 357
G+I ++ + TP I + H++ V+ L++HP+G++LCSGS D T +FWCR R
Sbjct: 362 DALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRARP 421
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV 415
PG DK+++ + ++ R G LP G G + + +PG+
Sbjct: 422 PGGQEFDKWHLTEEGAAQKELERITKREWGTNALPANAAGGGGGGGGGDKQQVALPGL 479
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|P0CS46|PFS2_CRYNJ Polyadenylation factor subunit 2 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 345 bits (885), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 162/373 (43%), Positives = 234/373 (62%), Gaps = 5/373 (1%)
Query: 2 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA 61
RK+ RR VDY V ++ + + R + P+ ++ LP VA NPSTS
Sbjct: 63 RKIKPRRTVDYQGGVQKWRMLNKLKGVHEFRPAIHPNPSDIVNFLPPVALRSNPSTSICD 122
Query: 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV 121
+VHTS+NK R V WTP RRL+TG+ G+FTLWNG SFN+E I Q HD +IRS
Sbjct: 123 YWVHTSINKERSPTRVVRWTPDARRLLTGNDKGQFTLWNGASFNYESITQVHDDSIRSFT 182
Query: 122 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 181
+SHN +VS D GG IKY+ ++ N+ + H+E+ D+S+ D +F +C DD VK
Sbjct: 183 YSHNGQALVSADKGGTIKYFTPHLTNIHGFQ-GHREACHDVSWSPNDERFVTCGDDGLVK 241
Query: 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
+W + +EERSL+GHGWDV+ VDWHPTK L+VSG KD LVK WD ++G++L + H K+
Sbjct: 242 IWSYREAKEERSLSGHGWDVRCVDWHPTKGLIVSGSKDMLVKFWDPRTGKDLSTLHSSKS 301
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301
+ +W+ +G+ V TA +D +I+L+DIR +ELE +GH K+V + WHP H VSG
Sbjct: 302 TINTCRWSPDGHLVATAGQDSVIRLFDIRTFRELEVLKGHEKEVNCIEWHPIHHSLLVSG 361
Query: 302 SLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR- 357
G+I ++ + TP I + H++ V+ L++HP+G++LCSGS D T +FWCR R
Sbjct: 362 DALGTINYFSLLSPTPSTPITTLSAAHEDAVFSLSFHPLGHILCSGSKDFTARFWCRARP 421
Query: 358 PGDTARDKFNMGQ 370
PG DK+++ +
Sbjct: 422 PGGQEFDKWHLTE 434
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Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|Q4I7X1|PFS2_GIBZE Polyadenylation factor subunit 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PFS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 163/357 (45%), Positives = 229/357 (64%), Gaps = 30/357 (8%)
Query: 43 IDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ 102
+DMLP A + S K +H+SLNK + IN V WTP GRRL+T S SGEFTLWNG
Sbjct: 66 VDMLPPAARVTKAADSIPIKHLHSSLNKIKHPINVVRWTPEGRRLLTASTSGEFTLWNGT 125
Query: 103 SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDL 162
FNFE I+QAHD AIR++ +SH+D+W++S D GA+KYWQ N NNV++ +AH + +RDL
Sbjct: 126 GFNFETIMQAHDSAIRALEYSHSDDWLISADHDGAVKYWQPNFNNVQS-INAHTDPIRDL 184
Query: 163 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222
+F +D KF + SDD+T+K++DFA Q E L GHGWD KSVDWHPTK LLVSG KD LV
Sbjct: 185 AFSPSDSKFVTASDDSTLKIFDFALGQMESKLEGHGWDAKSVDWHPTKGLLVSGSKDHLV 244
Query: 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH 281
KLWD ++ R L + HGHK+ + V + + G + T+++DQ +++D+R M+++ +GH
Sbjct: 245 KLWDPRTSRCLTTLHGHKSTITKVLFEKVRGACLATSARDQTARVFDLRMMRDICLLKGH 304
Query: 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET------------------------- 316
KD++ L WHP H +G +DGS+FH+L+
Sbjct: 305 EKDISTLTWHPVHPNLLSTGGMDGSLFHYLLDSPNPPPGQSFTVAPYDSPDPTTVPAQSV 364
Query: 317 -PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA--RDKFNMGQ 370
P ++ HD +W L WHP+G++L SGSND T+FW R RPGD +D++++G+
Sbjct: 365 WPTHKVPYAHDYAIWSLDWHPLGHILASGSNDRITRFWSRARPGDAEVFQDRYHIGE 421
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533) |
| >sp|Q2TZG4|PFS2_ASPOR Polyadenylation factor subunit 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pfs2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 161/404 (39%), Positives = 238/404 (58%), Gaps = 34/404 (8%)
Query: 7 RRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAI-DMLPTVAYTDNPSTSFAAKFVH 65
R DY S++V++M+ R + R + A+ I DMLP +A +P + + +H
Sbjct: 32 RLVTDYGSSLVQWMRTRRPRYKGGHRMETERPSASYIVDMLPPLARIHSPVDTIPVRHLH 91
Query: 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH----DHAIRSMV 121
S+ K++ I V WTP GRRL+TG +GEF LWNG +FNFE ++ AH + S+
Sbjct: 92 QSIGKSKKPITVVRWTPEGRRLLTGGHTGEFMLWNGTAFNFETVMDAHYDQLQAGVTSLA 151
Query: 122 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 181
WSH+ +W++SG G IKYW+ N NNV+ AH ++VRDL++ +D KF S SDDTT+K
Sbjct: 152 WSHSHDWLISGGQKGDIKYWRPNFNNVETIDDAHHDAVRDLAWSPSDTKFLSASDDTTLK 211
Query: 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN 241
++DF + LTGH WDVKS DWHPTK LLVSG KD VK WD ++ R L + H HKN
Sbjct: 212 IFDFTSRTADTVLTGHNWDVKSCDWHPTKGLLVSGSKDHQVKFWDPRTARCLTTLHSHKN 271
Query: 242 MVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
V ++++ N N + T+S+DQ +++D+R M+++ RGH K V++L WHP H +
Sbjct: 272 TVTATRFSRVNQNLLATSSRDQTARVFDLRMMRDICILRGHEKPVSSLTWHPIHSSLIST 331
Query: 301 GSLDGSIFHWLVGHET--------------------------PQVEIHNVHDNTVWDLAW 334
GS DGS++H+L+ P + H T+W L W
Sbjct: 332 GSEDGSLYHYLLDEPNVPSGQIPTIAPYDSPDPANTPAQVIYPAHRVQYAHSATIWSLDW 391
Query: 335 HPIGYLLCSGSNDHTTKFWCRNRPGDTA--RDKFNMGQNQGYGE 376
HP+G++L SGS D+ T+FW R RPG+T+ +D+F++G+ +
Sbjct: 392 HPLGHILASGSKDNFTRFWSRARPGETSYMKDRFHIGEEAAEAQ 435
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) |
| >sp|Q6BVZ3|PFS2_DEBHA Polyadenylation factor subunit 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PFS2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 173/455 (38%), Positives = 246/455 (54%), Gaps = 41/455 (9%)
Query: 2 RKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPS----- 56
+K RR VD+ + + R+ R D + ++ + ID+LP+ AY N
Sbjct: 43 KKTAYRRTVDHGNNMGRWYINRSLGIDDQPIGKIRPESSYLIDLLPSPAYASNSVRENKN 102
Query: 57 ----TSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA 112
KFVH S NK + SIN V WTP GRRL+ S SGEFT+WNG +FNFE I+QA
Sbjct: 103 NMSIMDIQTKFVHLSSNKAKHSINTVKWTPEGRRLLVASHSGEFTVWNGMTFNFETIMQA 162
Query: 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 172
HD AI S+ +SHND W++SGD G IKYWQ N NNV + H + +RD++F D KF
Sbjct: 163 HDSAILSLKYSHNDEWLLSGDQSGVIKYWQTNFNNVNI-INGHSDGIRDIAFSPNDSKFL 221
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 232
+CSDD+T+K+W+F QEERSL GH WDVKS DWHP L+VSG KD+L+KLWD ++
Sbjct: 222 TCSDDSTMKIWNFNNGQEERSLVGHHWDVKSADWHPNLGLIVSGSKDNLIKLWDPRASSC 281
Query: 233 LCSFHGHKNMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290
+ + HG K+ + K+ G L A S+D+ +++D+R MK++ R H D++ + W
Sbjct: 282 VSTLHGFKHTITKTKFQPTGTKRLLASVSRDKSCRIFDLRTMKDILVIRDHETDLSCVEW 341
Query: 291 HPFHEEYFVSGSLDGSIFHWLVG---------------HETPQVEIHNV---HDNTVWDL 332
HP H + + DGS+ H+++ +P H + H+ + L
Sbjct: 342 HPVHPSMITTAAYDGSMNHYIMDSYISDNNIKNDSNNNSTSPIEASHKIPYAHEKAIHAL 401
Query: 333 AWHPIGYLLCSGSNDHTTKFWCRNRPGD--TARDKFNMGQNQG---YGEQNAVFAGRMPG 387
+HP+G+LLCS D + +FW R RP D + +D G YG N + A P
Sbjct: 402 EYHPLGHLLCSAGADRSARFWSRARPNDPMSFQDALYTNDKVGAWYYGVNNNINAVIEPS 461
Query: 388 NFPL-PEGPTTPGPF-APGLTR----NEGTIPGVG 416
+ + P++ PGL NE T G G
Sbjct: 462 TASVNKDDPSSAQAINLPGLNNLPNGNESTTNGWG 496
|
Required for 3'-end cleavage and polyadenylation of pre-mRNAs. Also involved in chromosome segregation where it has a role in chromosome attachment to the mitotic spindle. Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | ||||||
| 255544005 | 727 | WD-repeat protein, putative [Ricinus com | 0.998 | 0.883 | 0.837 | 0.0 | |
| 296090356 | 699 | unnamed protein product [Vitis vinifera] | 0.953 | 0.876 | 0.787 | 0.0 | |
| 359495038 | 730 | PREDICTED: flowering time control protei | 0.953 | 0.839 | 0.787 | 0.0 | |
| 449445059 | 725 | PREDICTED: LOW QUALITY PROTEIN: flowerin | 0.948 | 0.841 | 0.807 | 0.0 | |
| 356546364 | 713 | PREDICTED: flowering time control protei | 0.964 | 0.869 | 0.804 | 0.0 | |
| 140068416 | 745 | WD40-like [Medicago truncatula] | 0.967 | 0.834 | 0.803 | 0.0 | |
| 356556823 | 714 | PREDICTED: flowering time control protei | 0.964 | 0.868 | 0.800 | 0.0 | |
| 357515041 | 794 | Flowering time control protein FY [Medic | 0.942 | 0.763 | 0.790 | 0.0 | |
| 75037131 | 677 | putative OsFY [Oryza sativa Japonica Gro | 0.931 | 0.884 | 0.696 | 0.0 | |
| 218189742 | 717 | hypothetical protein OsI_05213 [Oryza sa | 0.931 | 0.835 | 0.692 | 0.0 |
| >gi|255544005|ref|XP_002513065.1| WD-repeat protein, putative [Ricinus communis] gi|223548076|gb|EEF49568.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 995 bits (2572), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/652 (83%), Positives = 572/652 (87%), Gaps = 10/652 (1%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQ TPAAAIDMLPT AY++NPSTSFA
Sbjct: 77 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDMLPTAAYSENPSTSFA 136
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTSLNKNRCSINRVLWTP GRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 137 AKFVHTSLNKNRCSINRVLWTPNGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSM 196
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHNDNWMVSGDDGGAIKYWQ+NMNNVKANK+AHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 197 VWSHNDNWMVSGDDGGAIKYWQSNMNNVKANKNAHKESVRDLSFCRTDLKFCSCSDDTTV 256
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAKS RELCSFHGHK
Sbjct: 257 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSERELCSFHGHK 316
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS
Sbjct: 317 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 376
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVGHETPQ+E+ N HDN+VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD
Sbjct: 377 GSFDGSIFHWLVGHETPQIEVPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 436
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
TAR+KFNMGQNQGYGEQN AGR+PGNFP+PE PTTPGPFAPGL RNEGTIPG+G AMP
Sbjct: 437 TAREKFNMGQNQGYGEQNPALAGRLPGNFPVPEPPTTPGPFAPGLARNEGTIPGIGAAMP 496
Query: 421 LSIPSFDSSAQGEQKQPL--SMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQG 478
LSIPS D ++QGEQKQPL SMPLGAPPLPPGPHPSLLTANQQQGYQQNP MP QQHQ
Sbjct: 497 LSIPSLDGTSQGEQKQPLPISMPLGAPPLPPGPHPSLLTANQQQGYQQNPQQMPQQQHQA 556
Query: 479 HPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPM 538
PQQMP L MPP NM QLQ P L P QMP GMP + G P+SH +
Sbjct: 557 LPQQMPSLPMPPPNMQQLQ-PPSHLPLLPHPHLPRPQQMPPHGMPGTLSGPSSIPASHAV 615
Query: 539 SMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG---GAPPQVGGFPNG---MQGPPNSS 592
M P+GMQG+MNQM PPM QGH+MGMN MHSG A P VGGFPNG MQGP N++
Sbjct: 616 PMAGPMGMQGTMNQMVPPMPQGHFMGMNQMHSGSLPTSAAPPVGGFPNGLPNMQGPSNAT 675
Query: 593 GPQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQSQQ 643
G MYPQGG FNRPQ GQMPMMPG+NP+QSG+QSGM PPGPPPH Q+ Q
Sbjct: 676 GAPMYPQGGPFNRPQGGQMPMMPGFNPYQSGSQSGMPLSLPPGPPPHSQTPQ 727
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296090356|emb|CBI40175.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/636 (78%), Positives = 531/636 (83%), Gaps = 23/636 (3%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRKL QRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQ TPAAAID+LP VAY+DNPSTSFA
Sbjct: 36 MRKLAQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDLLPAVAYSDNPSTSFA 95
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 96 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSM 155
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHN+NWMV+GDDGG+IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 156 VWSHNENWMVTGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 215
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQE+RSL+GHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHK
Sbjct: 216 KVWDFARCQEDRSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHK 275
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE+YFVS
Sbjct: 276 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEDYFVS 335
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVGHETPQVEI HDN+VWDLAWHPIGY+LCSGSNDHTTKFWCRNRPGD
Sbjct: 336 GSFDGSIFHWLVGHETPQVEIPGAHDNSVWDLAWHPIGYILCSGSNDHTTKFWCRNRPGD 395
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
T RDKFNMG NQGYG+QN GRMPGNFP+PE PTTPGPFA GLTRNEGTIPGVGVAMP
Sbjct: 396 TVRDKFNMGHNQGYGDQNPALGGRMPGNFPVPETPTTPGPFAAGLTRNEGTIPGVGVAMP 455
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMP-PQQHQGH 479
L+IPS D+SAQGEQKQPL + + P P P Q P PQ HQ
Sbjct: 456 LTIPSLDTSAQGEQKQPLPVSIPLGAPPLPPGPHPSLLAANQQQAYQQNPPQMPQHHQAL 515
Query: 480 PQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGM----PSPMPGSLPTPS- 534
PQQMP L + P NM QLQ P L PPQ+P +GM PS MPGSLP PS
Sbjct: 516 PQQMPPLPLQPPNMSQLQ-PPSHLPLLPHPHLPRPPQLPPMGMPSNIPSSMPGSLPMPSM 574
Query: 535 --SHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSG----GGAPPQVGGFPNGMQGP 588
S P+ MP P+GMQG+MNQM PPM QGH+MGMNPMH+G GG PP +G F QG
Sbjct: 575 PTSLPLQMPAPMGMQGAMNQMGPPMPQGHFMGMNPMHAGSLPTGGVPPPIGSF----QG- 629
Query: 589 PNSSGPQMYPQGGAFNR-PQGQMPMMPGYNPFQSGN 623
G QMY GG+FNR P GQMPMMPG NP+Q+GN
Sbjct: 630 ----GAQMYAPGGSFNRAPAGQMPMMPGLNPYQTGN 661
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495038|ref|XP_002267704.2| PREDICTED: flowering time control protein FY-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 962 bits (2486), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/636 (78%), Positives = 531/636 (83%), Gaps = 23/636 (3%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRKL QRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQ TPAAAID+LP VAY+DNPSTSFA
Sbjct: 67 MRKLAQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQPTPAAAIDLLPAVAYSDNPSTSFA 126
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 127 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSM 186
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHN+NWMV+GDDGG+IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 187 VWSHNENWMVTGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 246
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQE+RSL+GHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHK
Sbjct: 247 KVWDFARCQEDRSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHK 306
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE+YFVS
Sbjct: 307 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEDYFVS 366
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVGHETPQVEI HDN+VWDLAWHPIGY+LCSGSNDHTTKFWCRNRPGD
Sbjct: 367 GSFDGSIFHWLVGHETPQVEIPGAHDNSVWDLAWHPIGYILCSGSNDHTTKFWCRNRPGD 426
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
T RDKFNMG NQGYG+QN GRMPGNFP+PE PTTPGPFA GLTRNEGTIPGVGVAMP
Sbjct: 427 TVRDKFNMGHNQGYGDQNPALGGRMPGNFPVPETPTTPGPFAAGLTRNEGTIPGVGVAMP 486
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMP-PQQHQGH 479
L+IPS D+SAQGEQKQPL + + P P P Q P PQ HQ
Sbjct: 487 LTIPSLDTSAQGEQKQPLPVSIPLGAPPLPPGPHPSLLAANQQQAYQQNPPQMPQHHQAL 546
Query: 480 PQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGM----PSPMPGSLPTPS- 534
PQQMP L + P NM QLQ P L PPQ+P +GM PS MPGSLP PS
Sbjct: 547 PQQMPPLPLQPPNMSQLQ-PPSHLPLLPHPHLPRPPQLPPMGMPSNIPSSMPGSLPMPSM 605
Query: 535 --SHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSG----GGAPPQVGGFPNGMQGP 588
S P+ MP P+GMQG+MNQM PPM QGH+MGMNPMH+G GG PP +G F QG
Sbjct: 606 PTSLPLQMPAPMGMQGAMNQMGPPMPQGHFMGMNPMHAGSLPTGGVPPPIGSF----QG- 660
Query: 589 PNSSGPQMYPQGGAFNR-PQGQMPMMPGYNPFQSGN 623
G QMY GG+FNR P GQMPMMPG NP+Q+GN
Sbjct: 661 ----GAQMYAPGGSFNRAPAGQMPMMPGLNPYQTGN 692
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449445059|ref|XP_004140291.1| PREDICTED: LOW QUALITY PROTEIN: flowering time control protein FY-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/633 (80%), Positives = 547/633 (86%), Gaps = 23/633 (3%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRKLTQRRAVDYTSTVVRYMQ+RMWQRDS+DRTVLQ+TPAAAIDMLP AY+DNPSTSFA
Sbjct: 80 MRKLTQRRAVDYTSTVVRYMQLRMWQRDSKDRTVLQSTPAAAIDMLPPAAYSDNPSTSFA 139
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTS+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 140 AKFVHTSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAIRSM 199
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHNDNWMVSGDDGG+IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 200 VWSHNDNWMVSGDDGGSIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 259
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEERSL+GHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK+G+ELCSFHGHK
Sbjct: 260 KVWDFARCQEERSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGKELCSFHGHK 319
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS
Sbjct: 320 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 379
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVGHETPQ+EI N HDN+VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD
Sbjct: 380 GSFDGSIFHWLVGHETPQIEITNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 439
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
TARDKF+ GY EQN + R+ GNF +P+GPTTPGPF PGL RNEGTIPG+GVAMP
Sbjct: 440 TARDKFST----GYSEQNPAGSARVTGNFVVPDGPTTPGPFPPGLARNEGTIPGIGVAMP 495
Query: 421 LSIPSFDSSAQGEQKQP--LSMPLGAPPLPPGPHPSLLTANQQQGY-QQNPPPMPPQQHQ 477
LS D++A GE KQP +S+P+GAPPLPPGPHPSLL ANQQ + Q Q
Sbjct: 496 LS----DTAAMGEHKQPHQISLPVGAPPLPPGPHPSLLAANQQHSFQQNPQQQQQQQSQH 551
Query: 478 GHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPT--PSS 535
QQM + M PQN+PQLQPPSH P+L HP++ R PPQMP L MPS PGSLP+ P+S
Sbjct: 552 HQTQQMAPVPMQPQNLPQLQPPSHFPLLPHPNLPR-PPQMPALNMPS-QPGSLPSSGPAS 609
Query: 536 HPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSG----GGAPPQVGGFPN---GMQGP 588
P+ MP P+GMQGSMNQM PPM Q HYMGMNPMHSG GAPP V GF N MQGP
Sbjct: 610 GPLPMPGPMGMQGSMNQMVPPMPQNHYMGMNPMHSGPMPTSGAPPSVQGFQNNLPNMQGP 669
Query: 589 PNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQ 620
N+SG MYPQGG FNR Q GQMPM PG+NP+Q
Sbjct: 670 SNASGAPMYPQGGGFNRGQAGQMPMTPGFNPYQ 702
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356546364|ref|XP_003541596.1| PREDICTED: flowering time control protein FY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/641 (80%), Positives = 540/641 (84%), Gaps = 21/641 (3%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
+RKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ T AAAIDMLP V Y DNPSTSFA
Sbjct: 86 IRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTSAAAIDMLPAVGYPDNPSTSFA 145
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTSLNKNRC INRVLWTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 146 AKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSM 205
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 206 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 265
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEE SLTGHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHK
Sbjct: 266 KVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHK 325
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVS
Sbjct: 326 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVS 385
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVGHETPQ+EI N HDN VWDLAWHPIGYLLCSGS+DHTTKFWCRNRPGD
Sbjct: 386 GSYDGSIFHWLVGHETPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGD 445
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
ARD+FN G QGY EQ+ V AGR GNFP+ EGPTTPGPFAPGLTRNEGTIPGVGVAMP
Sbjct: 446 PARDRFNTGM-QGYAEQSPV-AGRTGGNFPIAEGPTTPGPFAPGLTRNEGTIPGVGVAMP 503
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP 480
LSIPS D QGEQKQP + +GAPPLPPGPHPSL+ ANQQQ YQQNP MP QHQ P
Sbjct: 504 LSIPSLD-MPQGEQKQPHPVSMGAPPLPPGPHPSLINANQQQPYQQNPQQMPQHQHQALP 562
Query: 481 QQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSM 540
QQM L MPP NM QLQ PSH P P QMP +GMP +PG P+SHPM M
Sbjct: 563 QQMGSLPMPP-NMQQLQHPSHSPFPNMPRPPP---QMP-IGMPGSIPGISSVPTSHPMPM 617
Query: 541 PVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG-------GAPPQVGGFPNGMQGPPNSSG 593
P P+GMQG+MNQM PM QG Y+GMN MHSG G PN MQGP N++
Sbjct: 618 PGPMGMQGAMNQMGSPMPQGPYVGMNQMHSGSLPTSGGPPLGGFPGNLPN-MQGPSNAN- 675
Query: 594 PQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPPP 633
YPQG +FNRPQ GQMP+M GYNP+QSGNQSGM P P
Sbjct: 676 ---YPQGASFNRPQGGQMPLMQGYNPYQSGNQSGMPPNAQP 713
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|140068416|gb|ABO83643.1| WD40-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/642 (80%), Positives = 545/642 (84%), Gaps = 20/642 (3%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP Y+DNPSTSFA
Sbjct: 112 MRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPAAGYSDNPSTSFA 171
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTSLNKNRC+IN VLWTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 172 AKFVHTSLNKNRCAINCVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDSAIRSM 231
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
+WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 232 IWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 291
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEE SLTGHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAKSG+EL SFHGHK
Sbjct: 292 KVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKSGKELSSFHGHK 351
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVS
Sbjct: 352 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVS 411
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVG +TPQ+EI N HDN VWDLAWHPIGYLLCSGS+DHTTKFW RNRPGD
Sbjct: 412 GSYDGSIFHWLVGQDTPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWSRNRPGD 471
Query: 361 TARD-KFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVA 418
+ARD ++N G QGY EQN V AGR+PG+F +PEGPTTPGPF PGL TRNEGTIPGVGVA
Sbjct: 472 SARDSRYNNGI-QGYAEQNPV-AGRVPGHFVMPEGPTTPGPFPPGLMTRNEGTIPGVGVA 529
Query: 419 MPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQG 478
MPLSIPSFD S QGEQKQP +GAPPLPPGPHPSLL NQQQ +QQNP +P Q Q
Sbjct: 530 MPLSIPSFDGS-QGEQKQPHPGSIGAPPLPPGPHPSLLNPNQQQPFQQNPQQIPQHQQQL 588
Query: 479 HPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPM 538
P L MPP NMPQ+Q SH ML H H+ RPPPQMP MPGSLP P+SHPM
Sbjct: 589 QQHMGP-LPMPP-NMPQIQHSSHSSMLPHQHLPRPPPQMPH-----GMPGSLPVPTSHPM 641
Query: 539 SMPVPVGMQGSMNQMAPPMQQGHYMGMNPMH---SGGGAPPQVGGFPNGMQGPPNSSGPQ 595
+P P+GMQG+MNQM PPM QGHY GMN MH P +GGFPN MQGPPN++
Sbjct: 642 PIPGPMGMQGTMNQMGPPMPQGHYGGMNQMHSGSLSSSGGPPMGGFPNNMQGPPNNN--- 698
Query: 596 MYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPPPGPP 636
YPQG FNRPQ GQMPMM GYNP+QSGNQ GM P G P
Sbjct: 699 -YPQGAPFNRPQGGQMPMMQGYNPYQSGNQPGMPPNSQQGGP 739
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556823|ref|XP_003546720.1| PREDICTED: flowering time control protein FY-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/641 (80%), Positives = 539/641 (84%), Gaps = 21/641 (3%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
+RKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP V Y DNPSTSFA
Sbjct: 87 IRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPAVGYPDNPSTSFA 146
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVHTSLNKNRC INRVLWTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQAHD AIRSM
Sbjct: 147 AKFVHTSLNKNRCPINRVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQAHDQAIRSM 206
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 207 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 266
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEE SL+GHGWDVKSVDWHPTKSLLVSGGKD+LVKLWDAK+GRELCSFHGHK
Sbjct: 267 KVWDFARCQEECSLSGHGWDVKSVDWHPTKSLLVSGGKDNLVKLWDAKTGRELCSFHGHK 326
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT LAWHPFHEEYFVS
Sbjct: 327 NTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTTLAWHPFHEEYFVS 386
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DGSIFHWLVGHETPQ+EI N HDN VWDLAWHPIGYLLCSGS+DHTTKFWCRNRPGD
Sbjct: 387 GSYDGSIFHWLVGHETPQIEISNAHDNNVWDLAWHPIGYLLCSGSSDHTTKFWCRNRPGD 446
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
ARD+FN G GY +QN V GRM GNF + EGPTTPGPFAPGLTRNEGTIPGVGVAMP
Sbjct: 447 PARDRFNTGM-PGYADQNPV-VGRMGGNFTIAEGPTTPGPFAPGLTRNEGTIPGVGVAMP 504
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP 480
LSIPS D QGEQKQP + +GAPPLPPGPHPSLL ANQQQ YQQNP +P QHQ P
Sbjct: 505 LSIPSLD-MPQGEQKQPHPVSMGAPPLPPGPHPSLLNANQQQPYQQNPQQIPQHQHQALP 563
Query: 481 QQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSM 540
QQM L MPP NM QLQ PSH P P QMP +GMP +PG P+SHPM M
Sbjct: 564 QQMGPLPMPP-NMQQLQHPSHSPFPNMPRPPP---QMP-IGMPGSIPGISSVPTSHPMPM 618
Query: 541 PVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG-------GAPPQVGGFPNGMQGPPNSSG 593
P P+GMQG+MNQM PM QG Y+GMN MHSG G PN MQGP N++
Sbjct: 619 PGPMGMQGAMNQMGTPMPQGPYVGMNQMHSGSLPTSGGPPLGGFPGNLPN-MQGPSNAN- 676
Query: 594 PQMYPQGGAFNRPQ-GQMPMMPGYNPFQSGNQSGMAPPPPP 633
YPQG +FNRPQ GQMP+M GY+P+QSGNQSGM P P
Sbjct: 677 ---YPQGASFNRPQGGQMPLMQGYSPYQSGNQSGMPPNAQP 714
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357515041|ref|XP_003627809.1| Flowering time control protein FY [Medicago truncatula] gi|355521831|gb|AET02285.1| Flowering time control protein FY [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/641 (79%), Positives = 536/641 (83%), Gaps = 35/641 (5%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRKLTQR+AVDYTSTVVRYMQIRM QRDSRDRTVLQ TPAAAIDMLP Y+DNPSTSFA
Sbjct: 112 MRKLTQRKAVDYTSTVVRYMQIRMSQRDSRDRTVLQPTPAAAIDMLPAAGYSDNPSTSFA 171
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--------- 111
AKFVHTSLNKNRC+IN VLWTPTGRRLITGSQ+GEFTLWNGQSFNFEMILQ
Sbjct: 172 AKFVHTSLNKNRCAINCVLWTPTGRRLITGSQTGEFTLWNGQSFNFEMILQLKNIRGQRW 231
Query: 112 ------AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 165
AHD AIRSM+WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC
Sbjct: 232 NSKYVQAHDSAIRSMIWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 291
Query: 166 RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225
RTDLKFCSCSDDTTVKVWDFARCQEE SLTGHGWDVKSVDWHPTKSLLVSGGKD+LVKLW
Sbjct: 292 RTDLKFCSCSDDTTVKVWDFARCQEECSLTGHGWDVKSVDWHPTKSLLVSGGKDNLVKLW 351
Query: 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 285
DAKSG+EL SFHGHKN VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV
Sbjct: 352 DAKSGKELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 411
Query: 286 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 345
T LAWHPFHEEYFVSGS DGSIFHWLVG +TPQ+EI N HDN VWDLAWHPIGYLLCSGS
Sbjct: 412 TTLAWHPFHEEYFVSGSYDGSIFHWLVGQDTPQIEISNAHDNNVWDLAWHPIGYLLCSGS 471
Query: 346 NDHTTKFWCRNRPGDTARD-KFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPG 404
+DHTTKFW RNRPGD+ARD ++N G QGY EQN V AGR+PG+F +PEGPTTPGPF PG
Sbjct: 472 SDHTTKFWSRNRPGDSARDSRYNNGI-QGYAEQNPV-AGRVPGHFVMPEGPTTPGPFPPG 529
Query: 405 L-TRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQG 463
L TRNEGTIPGVGVAMPLSIPSFD S QGEQKQP +GAPPLPPGPHPSLL NQQQ
Sbjct: 530 LMTRNEGTIPGVGVAMPLSIPSFDGS-QGEQKQPHPGSIGAPPLPPGPHPSLLNPNQQQP 588
Query: 464 YQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMP 523
+QQNP +P Q Q P L MPP NMPQ+Q SH ML H H+ RPPPQMP
Sbjct: 589 FQQNPQQIPQHQQQLQQHMGP-LPMPP-NMPQIQHSSHSSMLPHQHLPRPPPQMPH---- 642
Query: 524 SPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMH---SGGGAPPQVGG 580
MPGSLP P+SHPM +P P+GMQG+MNQM PPM QGHY GMN MH P +GG
Sbjct: 643 -GMPGSLPVPTSHPMPIPGPMGMQGTMNQMGPPMPQGHYGGMNQMHSGSLSSSGGPPMGG 701
Query: 581 FPNGMQGPPNSSGPQMYPQGGAFNRPQ-GQMPMMPGYNPFQ 620
FPN MQGPPN++ YPQG FNRPQ GQMPMM GYNP+Q
Sbjct: 702 FPNNMQGPPNNN----YPQGAPFNRPQGGQMPMMQGYNPYQ 738
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75037131|gb|ABA12455.1| putative OsFY [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/635 (69%), Positives = 488/635 (76%), Gaps = 36/635 (5%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK QRR VDYTSTVVRY+Q RMWQRD+RDR +Q TPAA +DMLP+VAY DNPSTSFA
Sbjct: 44 MRKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDMLPSVAYPDNPSTSFA 103
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVH+S+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD A+RSM
Sbjct: 104 AKFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSM 163
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
+WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 164 IWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTV 223
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDAKSGREL SFHGHK
Sbjct: 224 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHK 283
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTALAWHPFHEEYFVS
Sbjct: 284 NIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVS 343
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCSG NDH T+FWCRNRPGD
Sbjct: 344 GSYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGD 403
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+RNEGTIPG+GVAMP
Sbjct: 404 LTRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMP 463
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP 480
L D S GEQ+ + P P L A QQ Q Q
Sbjct: 464 L-----DGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQ----------QQYQQMQQ 508
Query: 481 QQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSM 540
Q PP NMPQLQPP+H ML H SR P +PQL PS P PM
Sbjct: 509 QHPQFPRPPPPNMPQLQPPAH--MLPHAQGSRAP--LPQL--PSMSGPPPVNPPLPPMPH 562
Query: 541 PVPVGMQGSMNQMAPPMQQGHYMGMNPMHSG--GGAPPQVGGFPNGM---QGPPNSSGPQ 595
P+ + +QGS NQM P M Q H +GMN H G PP +GGFPNGM QG ++SG Q
Sbjct: 563 PMAMQVQGSSNQMMPQMPQ-HLIGMNQTHQGPPSNMPP-MGGFPNGMGNIQGGSSASGMQ 620
Query: 596 MYPQGGAFNRPQGQMP--------MMPGYNPFQSG 622
+P GG +NRPQG+MP +PG + +Q G
Sbjct: 621 NFPMGGMYNRPQGKMPPQAQAQMTSIPGLSSYQPG 655
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218189742|gb|EEC72169.1| hypothetical protein OsI_05213 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/635 (69%), Positives = 486/635 (76%), Gaps = 36/635 (5%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK QRR VDYTSTVVRY+Q RMWQRD+RDR +Q TPAA +DMLP+VAY DNPSTSFA
Sbjct: 84 MRKPVQRRTVDYTSTVVRYVQARMWQRDARDRPTVQPTPAAVLDMLPSVAYPDNPSTSFA 143
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
AKFVH+S+NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD A+RSM
Sbjct: 144 AKFVHSSINKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQAVRSM 203
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
+WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRTDLKFCSCSDDTTV
Sbjct: 204 IWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRTDLKFCSCSDDTTV 263
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDAKSGREL SFHGHK
Sbjct: 264 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDAKSGRELRSFHGHK 323
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTALAWHPFHEEYFVS
Sbjct: 324 NIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTALAWHPFHEEYFVS 383
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360
GS DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCSG NDH T+FWCRNRPGD
Sbjct: 384 GSYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRFWCRNRPGD 443
Query: 361 TARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMP 420
RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+RNEGTIPG+GVAMP
Sbjct: 444 LTRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSRNEGTIPGIGVAMP 503
Query: 421 LSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP 480
L D S GEQ+ + P P L A QQ Q PQ + P
Sbjct: 504 L-----DGSDHGEQRPSIPGLPPGQPPLPPGPHPSLLAGGQQQQYQQMQQQHPQFPRPPP 558
Query: 481 QQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSM 540
MP L QPP+H ML H SR P +PQL PS P PM
Sbjct: 559 PNMPQL----------QPPAH--MLPHAQGSRAP--LPQL--PSMPGPPPVNPPLPPMPH 602
Query: 541 PVPVGMQGSMNQMAPPMQQGHYMGMNPMHSG--GGAPPQVGGFPNGM---QGPPNSSGPQ 595
P+ + +QGS NQM P M Q H +GMN H G PP +GGFPNGM QG ++SG Q
Sbjct: 603 PMAMQVQGSSNQMMPQMPQ-HLIGMNQTHQGPPSNMPP-MGGFPNGMGNIQGGSSASGMQ 660
Query: 596 MYPQGGAFNRPQGQMP--------MMPGYNPFQSG 622
+P GG +NRPQGQMP +PG + +Q G
Sbjct: 661 NFPMGGMYNRPQGQMPPQAQAQMTSIPGLSSYQPG 695
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 643 | ||||||
| UNIPROTKB|Q5JKX0 | 527 | B1147A04.35 "cDNA clone:J01300 | 0.502 | 0.612 | 0.832 | 2.1e-178 | |
| UNIPROTKB|E1BCT7 | 1336 | WDR33 "Uncharacterized protein | 0.617 | 0.297 | 0.531 | 4.7e-133 | |
| UNIPROTKB|F1PV59 | 1336 | WDR33 "Uncharacterized protein | 0.617 | 0.297 | 0.531 | 7.6e-133 | |
| UNIPROTKB|Q9C0J8 | 1336 | WDR33 "pre-mRNA 3' end process | 0.617 | 0.297 | 0.531 | 7.6e-133 | |
| DICTYBASE|DDB_G0295793 | 657 | DDB_G0295793 "WD40 repeat-cont | 0.673 | 0.659 | 0.536 | 1.6e-132 | |
| MGI|MGI:1921570 | 1330 | Wdr33 "WD repeat domain 33" [M | 0.617 | 0.298 | 0.531 | 2e-132 | |
| UNIPROTKB|E1BT84 | 1323 | WDR33 "Uncharacterized protein | 0.660 | 0.321 | 0.504 | 2.6e-132 | |
| UNIPROTKB|I3LTD5 | 1471 | WDR33 "Uncharacterized protein | 0.617 | 0.269 | 0.529 | 6.8e-132 | |
| UNIPROTKB|F1LT09 | 1327 | Wdr33 "Protein Wdr33" [Rattus | 0.617 | 0.299 | 0.531 | 2.9e-131 | |
| FB|FBgn0046222 | 807 | CG1109 [Drosophila melanogaste | 0.640 | 0.510 | 0.521 | 1.7e-121 |
| UNIPROTKB|Q5JKX0 B1147A04.35 "cDNA clone:J013000B23, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.1e-178, Sum P(2) = 2.1e-178
Identities = 273/328 (83%), Positives = 296/328 (90%)
Query: 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
MILQAHD A+RSM+WS+N+NWMV+GDDGGAIKYWQ+NMNNVK NK+AH+ESVRDLSFCRT
Sbjct: 1 MILQAHDQAVRSMIWSNNENWMVTGDDGGAIKYWQSNMNNVKVNKTAHRESVRDLSFCRT 60
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD LVKLWDA
Sbjct: 61 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDYLVKLWDA 120
Query: 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287
KSGREL SFHGHKN+V CVKWNQNGNWVLTASKDQIIKLYDIR+MKELESFRGH KDVTA
Sbjct: 121 KSGRELRSFHGHKNIVQCVKWNQNGNWVLTASKDQIIKLYDIRSMKELESFRGHNKDVTA 180
Query: 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347
LAWHPFHEEYFVSGS DG+IFHWLVGHETPQ+EI+N HDN+VWDLAWHP+GYLLCSG ND
Sbjct: 181 LAWHPFHEEYFVSGSYDGAIFHWLVGHETPQIEINNAHDNSVWDLAWHPVGYLLCSGGND 240
Query: 348 HTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTR 407
H T+FWCRNRPGD RDK+N GQ QGYG+Q+ FAGR G F +PE TTPGPF GL+R
Sbjct: 241 HATRFWCRNRPGDLTRDKYNSGQMQGYGDQHPAFAGRAMGGFQMPEPSTTPGPFNTGLSR 300
Query: 408 NEGTIPGVGVAMPLSIPSFDSSAQGEQK 435
NEGTIPG+GVAMPL D S GEQ+
Sbjct: 301 NEGTIPGIGVAMPL-----DGSDHGEQR 323
|
|
| UNIPROTKB|E1BCT7 WDR33 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 4.7e-133, Sum P(2) = 4.7e-133
Identities = 213/401 (53%), Positives = 274/401 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 398
PGD RD++N+ G E + P + + G P
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|F1PV59 WDR33 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 213/401 (53%), Positives = 274/401 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 398
PGD RD++N+ G E + P + + G P
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|Q9C0J8 WDR33 "pre-mRNA 3' end processing protein WDR33" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 213/401 (53%), Positives = 274/401 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 398
PGD RD++N+ G E + P + + G P
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| DICTYBASE|DDB_G0295793 DDB_G0295793 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 236/440 (53%), Positives = 308/440 (70%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ VD+ ST+++Y R++QRD RD V+Q ++LP +A NP TS
Sbjct: 54 MRKAVVRKTVDFNSTLIKYNLARVYQRDYRDFAVVQPDQLYIREILPPIALESNPITSVC 113
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
++F+HTS NK + IN V WTP GRRL+TGS SGEFTLWNG +FNFE ILQAHD A+RS+
Sbjct: 114 SRFIHTSSNKVKYPINCVSWTPEGRRLVTGSSSGEFTLWNGLTFNFETILQAHDSAVRSI 173
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDTT 179
+WSHN++WMVSGDD G IKYWQ NMNNVK K AH++S +R LSF TDLK SC+DD
Sbjct: 174 IWSHNEDWMVSGDDSGNIKYWQPNMNNVKIFK-AHEQSKIRGLSFSPTDLKLASCADDKI 232
Query: 180 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 239
+K+WDFARC E+ L GHGWDVK V WHP KSL+VSGGKD+ +K+WDAKS + + + HGH
Sbjct: 233 IKIWDFARCTEDNQLVGHGWDVKCVSWHPQKSLIVSGGKDNNIKIWDAKSSQNITTLHGH 292
Query: 240 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 299
K+ V V+WNQNGNW+++AS DQ++K++DIR MKE+++F+GH K+VTALA HP+HE+ FV
Sbjct: 293 KSTVSKVEWNQNGNWIVSASSDQLLKVFDIRTMKEMQTFKGHGKEVTALALHPYHEDLFV 352
Query: 300 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359
SG DG I +W+VG+ PQ EIH+ HD VW L+WHPIG++L SGSNDHTTKFW RNRP
Sbjct: 353 SGDKDGKILYWIVGNPEPQAEIHSAHDADVWSLSWHPIGHILASGSNDHTTKFWSRNRPA 412
Query: 360 DTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPG--PFAPG-LTRNEGTIPGVG 416
DT +DK+N N +N A + LP G + PG + P ++ + +
Sbjct: 413 DTMKDKYN-NPNASKDIENEEDADDQESDLSLP-GLSLPGLGSYKPSPQLSSQNILQNLN 470
Query: 417 VAMPLSIPSFDSSAQGEQKQ 436
+M P Q +Q+Q
Sbjct: 471 YSMQQQQPQQQPQQQQQQQQ 490
|
|
| MGI|MGI:1921570 Wdr33 "WD repeat domain 33" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.0e-132, Sum P(2) = 2.0e-132
Identities = 213/401 (53%), Positives = 274/401 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 398
PGD RD++N+ G E + P + + G P
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 447
|
|
| UNIPROTKB|E1BT84 WDR33 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1204 (428.9 bits), Expect = 2.6e-132, Sum P(2) = 2.6e-132
Identities = 218/432 (50%), Positives = 286/432 (66%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRVWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 108 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 167
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 168 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 226
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 286
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 287 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 346
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 347 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 406
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGV 417
PGD RD++N+ G E + P + + G P + + E + G
Sbjct: 407 PGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKIAMEQ-EQMVKGKDE 465
Query: 418 A--MPLSIPSFD 427
+ + ++IP D
Sbjct: 466 SNDIEMTIPGLD 477
|
|
| UNIPROTKB|I3LTD5 WDR33 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 6.8e-132, Sum P(2) = 6.8e-132
Identities = 213/402 (52%), Positives = 274/402 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 48 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 107
Query: 61 AKFVHTSLNKNRCSINRV-LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS 119
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+
Sbjct: 108 TKFVRTSTNKVKCPVFVVGWWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRA 167
Query: 120 MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 179
M WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD T
Sbjct: 168 MTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGT 226
Query: 180 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFH 237
V++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 227 VRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLH 286
Query: 238 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEE 296
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 287 AHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEG 346
Query: 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RN
Sbjct: 347 LFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRN 406
Query: 357 RPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 398
RPGD RD++N+ G E + P + + G P
Sbjct: 407 RPGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 448
|
|
| UNIPROTKB|F1LT09 Wdr33 "Protein Wdr33" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 1203 (428.5 bits), Expect = 2.9e-131, Sum P(2) = 2.9e-131
Identities = 213/401 (53%), Positives = 274/401 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
MRK R+ +DY +V++Y++ R+WQRD RD +Q D++P + +NP +
Sbjct: 44 MRKAVNRKTIDYNPSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVT 103
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
KFV TS NK +C + V WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD +R+M
Sbjct: 104 TKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAM 163
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
WSHND WM++ D GG +KYWQ+NMNNVK + AHKE++R+ SF TD KF +CSDD TV
Sbjct: 164 TWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQ-AHKEAIREASFSPTDNKFATCSDDGTV 222
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RC EER L GHG DVK VDWHPTK L+VSG KDS +K WD K+G+ L + H
Sbjct: 223 RIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHA 282
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HKN V+ VK N NGNW+LTAS+D + KL+DIR +KE L+ FRGH+K+ TA+AWHP HE
Sbjct: 283 HKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGL 342
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGS+ W VG E + H+ +W LAWHP+G++LCSGSNDHT+KFW RNR
Sbjct: 343 FASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNR 402
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTP 398
PGD RD++N+ G E + P + + G P
Sbjct: 403 PGDKMRDRYNLNLLPGMSEDGVEYDDLEPNSLAVIPGMGIP 443
|
|
| FB|FBgn0046222 CG1109 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
Identities = 218/418 (52%), Positives = 287/418 (68%)
Query: 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFA 60
+RK R+ VDY +++++ ++ R++QRD RDR LQ MLP AY DNPS +
Sbjct: 75 LRKSVMRKTVDYNASIIKALENRLYQRDYRDRLALQPDSIYVPHMLPPSAYLDNPSNAVT 134
Query: 61 AKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSM 120
+FV T+ NK RC I + WTP GRRL+TG+ SGEFTLWNG +FNFE ILQAHD ++R+M
Sbjct: 135 TRFVKTATNKMRCPIFTLAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDISVRTM 194
Query: 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTV 180
VWSHND+WMV+GD GG +KYWQ+NMNNVK + AHKE++R +SF TD KF S SDD T+
Sbjct: 195 VWSHNDSWMVTGDHGGYVKYWQSNMNNVKMYQ-AHKEAIRGISFSPTDSKFVSGSDDGTL 253
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHG 238
++WDF RCQEER L GHG DVK V WHP K ++VSG KD+ +K+WD KSG L + H
Sbjct: 254 RIWDFMRCQEERVLRGHGADVKCVHWHPQKGMIVSGSKDNQQPIKIWDPKSGIALATLHA 313
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEY 297
HK+ V+ +KWN NGNW++TAS+D ++KL+DIR ++E ++ FRGH+K+ ++++WHP HE
Sbjct: 314 HKSTVMDLKWNDNGNWLVTASRDHLLKLFDIRNLREEVQVFRGHKKEASSVSWHPIHEGL 373
Query: 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
F SG DGSI W VG + + HD+ VW LAWHP+G++LCSGSNDHT KFW RNR
Sbjct: 374 FCSGGSDGSILFWNVGTDKEIGCVETAHDSIVWTLAWHPLGHILCSGSNDHTIKFWTRNR 433
Query: 358 PGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV 415
PGD RDK+N+ N A+ GP F LT ++G IPG+
Sbjct: 434 PGDLMRDKYNL--NTLPASLAALDECEYDDAIIPGMGPEDRVEFTESLTADKGFIPGL 489
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6NLV4 | FY_ARATH | No assigned EC number | 0.6971 | 0.8755 | 0.8701 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 643 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-68 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-61 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-45 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-44 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-43 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-41 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-36 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-31 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-20 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 7e-16 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 4e-15 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 1e-10 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-09 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-09 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-08 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-08 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 6e-08 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 7e-08 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 1e-07 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 2e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 3e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-07 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 9e-07 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 2e-06 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-06 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 2e-06 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 2e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-06 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 3e-06 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-06 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 4e-06 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 5e-06 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 5e-06 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 6e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 9e-06 | |
| PRK14086 | 617 | PRK14086, dnaA, chromosomal replication initiation | 1e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| pfam09606 | 768 | pfam09606, Med15, ARC105 or Med15 subunit of Media | 2e-05 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 2e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-05 | |
| pfam07271 | 279 | pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | 5e-05 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 6e-05 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 6e-05 | |
| PHA03307 | 1352 | PHA03307, PHA03307, transcriptional regulator ICP4 | 7e-05 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 1e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 1e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 2e-04 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 3e-04 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 4e-04 | |
| pfam09770 | 804 | pfam09770, PAT1, Topoisomerase II-associated prote | 5e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 5e-04 | |
| PHA03378 | 991 | PHA03378, PHA03378, EBNA-3B; Provisional | 5e-04 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 5e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 6e-04 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 7e-04 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 7e-04 | |
| pfam04652 | 315 | pfam04652, DUF605, Vta1 like | 7e-04 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 8e-04 | |
| PRK10263 | 1355 | PRK10263, PRK10263, DNA translocase FtsK; Provisio | 0.001 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.002 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 0.002 | |
| pfam07223 | 357 | pfam07223, DUF1421, Protein of unknown function (D | 0.002 | |
| TIGR01628 | 562 | TIGR01628, PABP-1234, polyadenylate binding protei | 0.002 | |
| PHA03247 | 3151 | PHA03247, PHA03247, large tegument protein UL36; P | 0.003 | |
| smart00818 | 165 | smart00818, Amelogenin, Amelogenins, cell adhesion | 0.003 | |
| cd06309 | 273 | cd06309, PBP1_YtfQ_like, Periplasmic binding domai | 0.003 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 9e-68
Identities = 84/282 (29%), Positives = 132/282 (46%), Gaps = 2/282 (0%)
Query: 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 131
+ V ++P G+ L TGS G +W+ ++ L+ H +R + S + ++ S
Sbjct: 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLAS 68
Query: 132 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191
G I+ W + H V ++F S S D T+KVWD +
Sbjct: 69 GSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128
Query: 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 251
+L GH V SV + P + + S +D +KLWD ++G+ + + GH V V ++ +
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188
Query: 252 GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311
G +L++S D IKL+D+ K L + RGH V ++A+ P SGS DG+I W
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDGTIRVWD 247
Query: 312 VGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ + H N+V LAW P G L SGS D T + W
Sbjct: 248 LRTGECVQTLSG-HTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 206 bits (525), Expect = 2e-61
Identities = 76/244 (31%), Positives = 124/244 (50%), Gaps = 2/244 (0%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169
L+ H + + +S + + +G G IK W + H VRD++
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229
S S D T+++WD + R+LTGH V SV + P +L S +D +K+WD ++
Sbjct: 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 289
G+ L + GH + V V ++ +G +V ++S+D IKL+D+R K + + GH +V ++A
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVA 184
Query: 290 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 349
+ P E +S S DG+I W + + H+N V +A+ P GYLL SGS D T
Sbjct: 185 FSP-DGEKLLSSSSDGTIKLWDL-STGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT 242
Query: 350 TKFW 353
+ W
Sbjct: 243 IRVW 246
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-45
Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 15/309 (4%)
Query: 54 NPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH 113
+ + S K + N S+ + + +G L+ +L + S ++L+ H
Sbjct: 9 SENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSS----LLLRGH 64
Query: 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKF 171
+ +I S+ +S + ++SG G IK W + +K+ + H SV L+ D
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNS 124
Query: 172 ---CSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWD 226
S S D TVK+WD + + R+L GH V S+ + P LL SG D +KLWD
Sbjct: 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184
Query: 227 AKSGRELCSFHGHKNMVLCVKWNQNGNW-VLTASKDQIIKLYDIRAMKELES-FRGHRKD 284
++G+ L + GH + V + ++ +G + + S D I+L+D+ K L S GH
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244
Query: 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 344
V + ++ P SGS DG+I W + + + + H ++V +A+ P G LL SG
Sbjct: 245 VVS-SFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302
Query: 345 SNDHTTKFW 353
S+D T + W
Sbjct: 303 SSDGTVRLW 311
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 164 bits (414), Expect = 5e-44
Identities = 80/302 (26%), Positives = 141/302 (46%), Gaps = 13/302 (4%)
Query: 62 KFVHTSLNKNRCSINRVLW-TPTGRRLITGSQSGEFT--LWNGQS-FNFEMILQAHDHAI 117
K + + + S++++ +P G ++ S S + T LW+ + L+ H ++
Sbjct: 99 KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV 158
Query: 118 RSMVWSHNDNWMVSGDDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFC-RTDLKFCSCS 175
S+ +S + + SG G IK W + + H + V L+F L S S
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218
Query: 176 DDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-EL 233
D T+++WD + + RS L+GH D + P SLL SG D ++LWD +S L
Sbjct: 219 SDGTIRLWDLSTGKLLRSTLSGH-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL 277
Query: 234 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWH 291
+ GH + VL V ++ +G + + S D ++L+D+ K + +GH V++L++
Sbjct: 278 RTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337
Query: 292 PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351
P GS DG+I W + P + + V +++ P G ++ SGS D T +
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE--GHSNVLSVSFSPDGRVVSSGSTDGTVR 395
Query: 352 FW 353
W
Sbjct: 396 LW 397
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 161 bits (407), Expect = 4e-43
Identities = 78/286 (27%), Positives = 137/286 (47%), Gaps = 9/286 (3%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFT-LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VS 131
S+ + ++P G+ L +GS LW+ ++ L H + S+ +S + + S
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216
Query: 132 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191
G G I+ W + + + + SF S S D T+++WD
Sbjct: 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSL 276
Query: 192 -RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGHKNMVLCVKW 248
R+L+GH V SV + P LL SG D V+LWD ++G+ L + GH+ V + +
Sbjct: 277 LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF 336
Query: 249 NQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307
+ +G+ +++ S D I+L+D+R K L++ GH +V ++++ P SGS DG++
Sbjct: 337 SPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSGSTDGTV 394
Query: 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W + + + H + V L + P G L SGS+D+T + W
Sbjct: 395 RLWDLSTGSLLRNLDG-HTSRVTSLDFSPDGKSLASGSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 3e-41
Identities = 53/196 (27%), Positives = 95/196 (48%)
Query: 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 132
++ V ++P GR L + S+ +W+ ++ L+ H + S+ +S + ++ S
Sbjct: 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 133 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 192
G IK W A + H V ++F K S S D T+K+WD + +
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
Query: 193 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 252
+L GH V SV + P LL SG +D +++WD ++G + + GH N V + W+ +G
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDG 273
Query: 253 NWVLTASKDQIIKLYD 268
+ + S D I+++D
Sbjct: 274 KRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 137 bits (346), Expect = 4e-36
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 2/164 (1%)
Query: 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 249
R+L GH V V + P LL +G D +K+WD ++G L + GH V V +
Sbjct: 1 LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS 60
Query: 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309
+G ++ + S D+ I+L+D+ + + + GH V+++A+ P S S D +I
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKV 119
Query: 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W V + H + V +A+ P G + S S D T K W
Sbjct: 120 WDVETGKCLTTLRG-HTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 133 bits (334), Expect = 3e-33
Identities = 74/250 (29%), Positives = 122/250 (48%), Gaps = 9/250 (3%)
Query: 67 SLNKNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSH 124
+L + ++ + ++P G LI +GS G LW+ + L H ++ +S
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSP 251
Query: 125 NDNWMVSGDDGGAIKYW-QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183
+ + + SG G I+ W + +++ S H SV ++F S S D TV++W
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW 311
Query: 184 DFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGHK 240
D + +L GH V S+ + P SLLVSGG D ++LWD ++G+ L + GH
Sbjct: 312 DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS 371
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N VL V ++ +G V + S D ++L+D+ L + GH VT+L + P + S
Sbjct: 372 N-VLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLAS 429
Query: 301 GSLDGSIFHW 310
GS D +I W
Sbjct: 430 GSSDNTIRLW 439
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (316), Expect = 5e-31
Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 6/213 (2%)
Query: 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQAHDHAIRSM 120
K + ++L+ + S+ ++P G L +GS G LW+ S + L H ++ S+
Sbjct: 232 KLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 121 VWSHNDNWMVSGDDGGAIKYW--QNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSDD 177
+S + + SG G ++ W + H+ V LSF SDD
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDD 350
Query: 178 TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 237
T+++WD + ++L GH +V SV + P ++ SG D V+LWD +G L +
Sbjct: 351 GTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409
Query: 238 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270
GH + V + ++ +G + + S D I+L+D++
Sbjct: 410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.8 bits (234), Expect = 1e-20
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSH 124
+L+ + S+ V ++P G+ L +GS G LW+ ++ + L+ H+ + S+ +S
Sbjct: 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSP 338
Query: 125 NDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183
+ + +VSG D G I+ W H +V +SF S S D TV++W
Sbjct: 339 DGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 236
D + R+L GH V S+D+ P L SG D+ ++LWD K+ + SF
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 7e-16
Identities = 32/178 (17%), Positives = 42/178 (23%), Gaps = 5/178 (2%)
Query: 418 AMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQ 477
+ + + Q Q +P G PP P Q GY Q P P Q
Sbjct: 158 EVEAQLQQRQQAPQLPQPPQQVLPQGMPP-RQAAFPQQGPPEQPPGYPQPPQGHPEQVQP 216
Query: 478 GHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHP 537
P A +P P P+ Q P Q+ P P P P
Sbjct: 217 QQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQ----FPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 538 MSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQ 595
+ P P + P PQ + Q
Sbjct: 273 QAQPPPQNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQ 330
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 48/209 (22%), Positives = 59/209 (28%), Gaps = 15/209 (7%)
Query: 424 PSFDSSAQGEQKQPLSMPLGAP---PLPPGPHPSLLTANQ---QQGYQQNPPPMPPQQHQ 477
D S G +P P AP P P P +L+ + Q +Q P +P Q
Sbjct: 119 LQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQ 178
Query: 478 GHPQQMPHLAMP-PQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPT-PSS 535
PQ MP PQ P QPP + Q P Q +P LP
Sbjct: 179 VLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQ 238
Query: 536 HPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAP----PQVGGFPNGMQGPPNS 591
P + P S PP Q P P G P G P
Sbjct: 239 QPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQGQNAPLP- 297
Query: 592 SGPQMYPQGGAFNRPQGQMPMMPGYNPFQ 620
P PQ + P +
Sbjct: 298 --PPQQPQLLPLVQQPQGQQRGPQFREQL 324
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 40/159 (25%), Positives = 44/159 (27%), Gaps = 12/159 (7%)
Query: 413 PGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHP-----SLLTANQQQGYQQN 467
L A Q+ P P G P P G L A Q Q
Sbjct: 172 LPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPP 231
Query: 468 PPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISR--PPPQMPQLGMPSP 525
PP PQQ P Q P Q MP PP Q P + PPPQ P
Sbjct: 232 LPPQLPQQPP--PLQQPQFPGLSQQMPP-PPPQPPQQQQQPPQPQAQPPPQNQPTPHPGL 288
Query: 526 MPGSLPT--PSSHPMSMPVPVGMQGSMNQMAPPMQQGHY 562
G P P +P+ QG Q
Sbjct: 289 PQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQL 327
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 28/182 (15%), Positives = 37/182 (20%), Gaps = 8/182 (4%)
Query: 467 NPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQ----PPSHLPMLQHPHISRPPPQMPQLGM 522
P Q P Q P L P P +P ++
Sbjct: 96 KTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLS 155
Query: 523 PSPMPGSLPTPSSHPMS-MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGF 581
+ L P P + M Q P +
Sbjct: 156 LEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQ 215
Query: 582 PNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQS 641
P P+ + Q PQ P+ P S P PP Q
Sbjct: 216 PQQFLPAPSQAPAQPPLPP---QLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQP 272
Query: 642 QQ 643
Q
Sbjct: 273 QA 274
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-09
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
SG L + GH V V ++ +G ++ + S D IKL+D
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 8e-09
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
+ R+L GH V SV + P +LL SG D V++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-08
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
+ ++L GH V SV + P L SG D +KLWD
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 5e-08
Identities = 36/159 (22%), Positives = 45/159 (28%), Gaps = 17/159 (10%)
Query: 395 PTTPGPFAPGLTRNEGTIPG-------------VGVAMPLSIPSFDSSAQGEQKQPLSMP 441
P PGP P L PG A P P + + S
Sbjct: 2840 PPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFA 2899
Query: 442 LGAPPLPPGPHPSLLTANQQQGYQQNPP-PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPS 500
L P P Q Q PP P PP PQ P LA +P
Sbjct: 2900 LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQ--PPLAPTTDPAGAGEPSG 2957
Query: 501 HLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMS 539
+P + +P+ +P P P S P+S
Sbjct: 2958 AVPQPWLGALVPGRVAVPRFRVPQPAP-SREAPASSTPP 2995
|
Length = 3151 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 6e-08
Identities = 76/305 (24%), Positives = 94/305 (30%), Gaps = 36/305 (11%)
Query: 369 GQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDS 428
GQ G +Q++ N P+ G A G+ + + G + P
Sbjct: 145 GQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQ-AGGMNQGQQGPVGQQQPPQMGQPGMPG 203
Query: 429 SAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQ-------------QGYQQNPP--PMPP 473
Q Q P G P L QQ Q QQ M P
Sbjct: 204 GGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263
Query: 474 QQHQGHPQQMPHLAMPPQNMPQLQPPSHLP--MLQHPHISRPPPQMPQLGMPSPMPGSLP 531
QQ QG Q+P PPQ PQ LP M Q P + P P +G P PG++P
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQP-MGPPPQRPGAVP 322
Query: 532 TPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNS 591
+ V Q + QM +G GG P Q
Sbjct: 323 QGGQA-VQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQ-- 379
Query: 592 SGPQMYPQGGAFNR-----------PQGQMPMMPGYNPFQS--GNQSGMAPPPPPGPPPH 638
G QM G + QGQ MM +P NQS PP P P P
Sbjct: 380 -GGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQPSVPSPG 438
Query: 639 GQSQQ 643
G Q
Sbjct: 439 GPGSQ 443
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-08
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
G+ L + GH V V ++ +GN + + S D ++++D
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 1e-07
Identities = 39/259 (15%), Positives = 53/259 (20%), Gaps = 10/259 (3%)
Query: 394 GPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGP-- 451
GP T L G P + + G Q + P P
Sbjct: 106 GPGTASNLLQSLNVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQ 165
Query: 452 -----HPSLLTANQQQGYQQNPP--PMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPM 504
+ A QQ P PPQ Q Q P
Sbjct: 166 MGPQQGQAQGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQ 225
Query: 505 LQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMG 564
+Q ++ QM Q P+ + M G M
Sbjct: 226 MQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQ 285
Query: 565 MNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQ 624
+ + Q+ G G G P PQ P Q +M +
Sbjct: 286 QSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR-PGAVPQGGQAVQQGVMSAGQQQLKQMK 344
Query: 625 SGMAPPPPPGPPPHGQSQQ 643
Q
Sbjct: 345 LRNMRGQQQTQQQQQQQGG 363
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (130), Expect = 2e-07
Identities = 58/263 (22%), Positives = 70/263 (26%), Gaps = 16/263 (6%)
Query: 383 GRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL 442
P P TP P P R A P + G
Sbjct: 2705 PPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP-------AVPAGPATPGGPARP 2757
Query: 443 GAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMP-PQNMPQLQPPSH 501
PP GP A G + + +P P L P +
Sbjct: 2758 ARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAA 2817
Query: 502 LPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGH 561
LP P PPP Q P P PG P P S P+ V G G + + P +
Sbjct: 2818 LPPAASPAGPLPPPTSAQPTAPPPPPG--PPPPSLPLGGSVAPG--GDVRRRPPS-RSPA 2872
Query: 562 YMGMNPMHSGGG--APPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPF 619
P A P V PP+ PQ +PQ Q P P P
Sbjct: 2873 AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP- 2931
Query: 620 QSGNQSGMAPPPPPGPPPHGQSQ 642
PP P P G +
Sbjct: 2932 PPPPPPRPQPPLAPTTDPAGAGE 2954
|
Length = 3151 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 3e-07
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 16/167 (9%)
Query: 128 WMVSGDDG-GAIKYWQNNMNNVKANK-SAHKESVRDLSF--CRTDLKFCSCSDDTTVKVW 183
W V G GAI+ +N M K H S+ DL F C +++ S S+D T++VW
Sbjct: 45 WEVEGGGLIGAIRL-ENQMRKPPVIKLKGHTSSILDLQFNPCFSEI-LASGSEDLTIRVW 102
Query: 184 DFARCQEERS--------LTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELC 234
+ E L GH + +DW+P ++ S G DS V +WD ++ +
Sbjct: 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
Query: 235 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 281
+ K + +KWN GN + + + + D R + SF H
Sbjct: 163 QINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-07
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 272 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310
K L + +GH VT++A+ P SGS DG++ W
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-07
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 272 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310
+ L++ +GH VT++A+ P +Y SGS DG+I W
Sbjct: 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 9e-07
Identities = 40/192 (20%), Positives = 57/192 (29%), Gaps = 20/192 (10%)
Query: 382 AGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMP 441
R + P P+ P P +A ++P S A + P
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPA------DPPAAVLAPAAALPPAASPAGPLPPPTSAQP 2836
Query: 442 LGAPPLPPGPHPSLLTAN---------QQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQN 492
APP PPGP P L +++ ++P P + +++ A+
Sbjct: 2837 T-APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRST 2895
Query: 493 MPQLQPPSHLPMLQHPHISRPP---PQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 549
PP P PP PQ P P P P P P P G G
Sbjct: 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG-AGE 2954
Query: 550 MNQMAPPMQQGH 561
+ P G
Sbjct: 2955 PSGAVPQPWLGA 2966
|
Length = 3151 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 37/180 (20%), Positives = 43/180 (23%), Gaps = 26/180 (14%)
Query: 385 MPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGA 444
+P P P P P P Q P P
Sbjct: 180 LPQGMP-PRQAAFPQQGPPEQPPGYPQPPQGHPEQV--------QPQQFLPAPSQAPAQP 230
Query: 445 PPLPPGPHPSLLTANQQQGYQQNPPPM----PPQQHQGHPQQMPHLAMPPQNMPQLQPPS 500
P P P Q QQ P P PQQ P P P+
Sbjct: 231 PLPPQLP-------QQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPT 283
Query: 501 HLP-MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 559
P + Q + PPPQ PQL P +Q S Q Q+
Sbjct: 284 PHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFR-----EQLVQLSQQQREALSQE 338
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 66/246 (26%), Positives = 76/246 (30%), Gaps = 21/246 (8%)
Query: 416 GVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQ 475
G A+ S P SAQ Q + P P P P L + Q+ P P PP Q
Sbjct: 186 GAALAPSAPPPTPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQ 245
Query: 476 HQGHPQQMPHLAMPPQNMPQLQPPSHLPM-------------LQHPHISRPPPQ--MPQL 520
Q QQ P P P Q H P LQHP + P P
Sbjct: 246 PQTASQQSPQPPAPSSRHP--QSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQ 303
Query: 521 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGG 580
P P+P S P S Q Q PP ++ P P Q
Sbjct: 304 VPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQSHK 363
Query: 581 FPNGMQGP-PNSSGPQMYPQGGA---FNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPP 636
P +QGP P P P A + P P Q QS P PP
Sbjct: 364 HPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423
Query: 637 PHGQSQ 642
QSQ
Sbjct: 424 VLTQSQ 429
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 194 LTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 252
L GH V V +HP+ ++L S G D +V +WD + G+ + H + + ++WN +G
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180
Query: 253 NWVLTASKDQIIKLYDIRAMKELESFRGH 281
+ + T SKD+ + + D R + S H
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAH 209
|
Length = 493 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 52/237 (21%), Positives = 61/237 (25%), Gaps = 23/237 (9%)
Query: 424 PSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQM 483
P + + LPP P P +QQQ Q P P Q Q
Sbjct: 50 PPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYPSQLPPQQVQS 109
Query: 484 PHLAMPPQNMPQLQPPSHL-----------------PMLQHPHISRPPPQMPQLGMPSPM 526
PQ P PPS + Q PP Q P P
Sbjct: 110 VPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQ 169
Query: 527 PGSLPTPSS-HPMSMPVPVGMQGSMNQMAPPMQ-QGHYMGMNPMHSGGGAPPQVGGFPNG 584
S P S +P P + M Q Y G P G P
Sbjct: 170 AQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYGPPQP----SPY 225
Query: 585 MQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQS 641
M G P +P G QGQ P GN +A P G +
Sbjct: 226 MYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYST 282
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 3e-06
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 318 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ H V +A+ P G LL SGS+D T + W
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184
H V ++F S SDD TV+VWD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 58/270 (21%), Positives = 66/270 (24%), Gaps = 42/270 (15%)
Query: 408 NEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP------------------ 449
+ + G MP I + + + P P+G P P
Sbjct: 58 AQQQVLQGGQGMPDPINALQNLTGQGTRGPQMGPMGPGPGRPMGQQMGGPGTASNLLQSL 117
Query: 450 -------------GPHPSLLTANQQQGYQQNP--PPMPPQQHQGHPQQMPHLAMPPQNMP 494
GPH Q G Q Q P QM P Q
Sbjct: 118 NVRGQMPMGAAGMGPHQMSRVGTMQPGGQAGGMMQQSSGQPQSQQPNQM----GPQQGQA 173
Query: 495 QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP--VPVGMQGSMNQ 552
Q Q Q P + PPQM Q GMP P P Q NQ
Sbjct: 174 QGQAGGMNQGQQGPVGQQQPPQMGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQ 233
Query: 553 MAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPM 612
M Q G Q G P MQG Q P + Q M
Sbjct: 234 QQQQMDQQQGPADAQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLP 293
Query: 613 MPGYNPFQSGNQSGMAPPPPPGPPPHGQSQ 642
Q P P GPPP
Sbjct: 294 NQ---MQQMPGGGQGGPGQPMGPPPQRPGA 320
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 3e-06
Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 170 KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAK 228
+ S + + V+VWD AR Q + H V S+D+ +LL SG D VKLW
Sbjct: 547 QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606
Query: 229 SGRELCSFHGHKNMVLCVKW-NQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVT 286
G + + N + CV++ +++G + S D + YD+R K L + GH K V+
Sbjct: 607 QGVSIGTIKTKAN-ICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVS 665
Query: 287 ALAWHPFHEEYFVSGSLDGSIFHW 310
+ + VS S D ++ W
Sbjct: 666 YVRF--VDSSTLVSSSTDNTLKLW 687
|
Length = 793 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 51/230 (22%), Positives = 57/230 (24%), Gaps = 22/230 (9%)
Query: 431 QGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLA--M 488
Q G + QQQ QQ P QQMP
Sbjct: 247 AQAQMGQQQQGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGG 306
Query: 489 PPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQG 548
P Q M PP P + G L + QG
Sbjct: 307 PGQPMG---PPPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQ-QQQQQG 362
Query: 549 SMNQMAPPMQQGHYMG----MNPMHSGGGAPPQVGGFPNGMQG--PPNSSGPQMYPQ--G 600
+ A Q +G M + Q G N MQ P S P PQ
Sbjct: 363 GNHPAAHQQQMNQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQT 422
Query: 601 GAFNRPQGQM----PMMPGYNPFQSGNQSGMAPPPP---PGPPPHGQSQQ 643
Q P PG P QS GM P PP P P P
Sbjct: 423 NQSMPQPPQPSVPSPGGPGSQPPQSV-SGGMIPSPPALMPSPSPQMSQSP 471
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 5e-06
Identities = 62/279 (22%), Positives = 81/279 (29%), Gaps = 52/279 (18%)
Query: 382 AGRMPGNF--PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLS 439
A PG P P+ P P AP + +E V M I + A + P
Sbjct: 2494 AAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASDDAGDP-- 2551
Query: 440 MPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPP----QQHQGHPQQMPHLAMP------ 489
PPLPP P+ A + P P P P P A P
Sbjct: 2552 ----PPPLPPAAPPA---APDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDD 2604
Query: 490 PQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 549
+ PPS LP H PPP PSP P + P ++P P +
Sbjct: 2605 RGDPRGPAPPSPLPPDTHA--PDPPP-------PSPSPAANEPDPHPPPTVPPP---ERP 2652
Query: 550 MNQMAPPMQQGHYMGMNPMHSGG-----------GAPPQVGGFPNGMQGPPNSSGPQMYP 598
+ AP + A P VG + PP P+
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPE--- 2709
Query: 599 QGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPP 637
P + P + Q+ A P P PP
Sbjct: 2710 -----PAPHALVSATPLPPGPAAARQASPALPAAPAPPA 2743
|
Length = 3151 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 27/123 (21%), Positives = 32/123 (26%), Gaps = 22/123 (17%)
Query: 515 PQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGA 574
P+M QL M SPM G++ P P QG Q G
Sbjct: 380 PRMRQLPMGSPMGGAMGQP---------PYYGQGPQ-QQFNGQPLGWPRMSMMP------ 423
Query: 575 PPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPG 634
P G GP +G A +R P P P
Sbjct: 424 ------TPMGPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDL 477
Query: 635 PPP 637
P P
Sbjct: 478 PQP 480
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 21/136 (15%), Positives = 28/136 (20%), Gaps = 12/136 (8%)
Query: 430 AQGEQKQPLSM----PLGAPPLPPGPHPSLLTANQQQGYQQNPPPM----PPQQHQGHPQ 481
Q + P P LP GP + Q Y P M P P
Sbjct: 82 DQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPA 141
Query: 482 QMPHLAM--PPQNMPQLQPPSHLPMLQHPHISRPPPQMP-QLGMPSPMPGSLPTPSSH-P 537
Q L P + Q P P G+ S
Sbjct: 142 QQRALQQLQQRYGAPASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALV 201
Query: 538 MSMPVPVGMQGSMNQM 553
++ +
Sbjct: 202 RLREADGTLEQRIKGA 217
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-06
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 325 HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
H V +A+ P G L SGS+D T K W
Sbjct: 11 HTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 29/189 (15%), Positives = 46/189 (24%), Gaps = 27/189 (14%)
Query: 384 RMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVA----MPLSIPSFDSSAQ-------- 431
PE P G G+ +P + P++ + Q
Sbjct: 100 PHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEPGAWP 159
Query: 432 ------GEQKQPLSMPLGAPPLPPG---PHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQ 482
G Q+Q L P AP P P G + H
Sbjct: 160 RAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWD 219
Query: 483 MPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPV 542
P + P+ P + PP+ + P + ++ P P
Sbjct: 220 RPR--RDRTDRPEPPPGAGHV----HRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPG 273
Query: 543 PVGMQGSMN 551
P +N
Sbjct: 274 PGEPTARLN 282
|
Length = 617 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-05
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184
H V ++F S SDD T+K+WD
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 54/265 (20%), Positives = 70/265 (26%), Gaps = 29/265 (10%)
Query: 368 MGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFD 427
M Q G Q V + P P + + P + G P+ P
Sbjct: 261 MQPQQMQGGQMQVPMQQQP---PQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQR 317
Query: 428 SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLA 487
A + Q + + + L QQ QQ H QQM
Sbjct: 318 PGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQV 377
Query: 488 MPPQNM---PQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPV 544
M L + L + + P M M SP P + P P
Sbjct: 378 GQGGQMVALGYLNIQGNQGGLGANPMQQGQPGM----MSSPSPVPQVQTNQSMPQPPQP- 432
Query: 545 GMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFN 604
S+ P Q SGG P P S PQM Q A
Sbjct: 433 ----SVPSPGGPGSQP-----PQSVSGGMIPSPPALMP--------SPSPQMS-QSPASQ 474
Query: 605 RPQGQMPMMPGYNPFQSGNQSGMAP 629
R Q + PG G S +P
Sbjct: 475 RTIQQDMVSPGGPLNTPGQSSVNSP 499
|
The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 28/148 (18%), Positives = 41/148 (27%), Gaps = 26/148 (17%)
Query: 446 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQP----PSH 501
P P Q Y Q P Q G P+ MP P +
Sbjct: 383 RQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSM---MPTPMGPGGPLRPNGLAP 439
Query: 502 LPMLQHPHISR-----PPPQMPQLGMPS----PMPGSLPTPSSHPMSMPVPVGMQGSMNQ 552
+ ++ P + PP P + P+ P+ LP P S S +
Sbjct: 440 MNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTA-SQGGQNKKLAQVLA 498
Query: 553 MAPPMQQGHYMG---------MNPMHSG 571
A P Q +G + P +
Sbjct: 499 SATPQMQKQVLGERLFPLVEAIEPALAA 526
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-05
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 103 SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
S L+ H + S+ +S + ++ SG D G IK W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32 | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 53/188 (28%), Positives = 62/188 (32%), Gaps = 40/188 (21%)
Query: 459 NQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMP 518
N+QQ + +P Q P + +A PQ PQ+QP R PQ
Sbjct: 123 NEQQAIEIDPTEEVNTQEPTQPAGVN-VANNPQ--PQVQPQ-----FGPNPQQRINPQRF 174
Query: 519 QLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQV 578
M M GM+ NQM P H GM P G P
Sbjct: 175 GFPMQPNM------------------GMRPGFNQMPP-----HMPGMPPNQMRPGFNPMP 211
Query: 579 G-----GFPNGMQGPPNSSGPQMYPQGGAFNRP----QGQMPMMPGYNPFQSGNQSGMAP 629
G GF PN + P PQ G FN P M PG+NP Q N
Sbjct: 212 GMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRPGFNPNQGMNPPPHMA 271
Query: 630 PPPPGPPP 637
P G PP
Sbjct: 272 GPRAGFPP 279
|
This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 6e-05
Identities = 49/272 (18%), Positives = 64/272 (23%), Gaps = 47/272 (17%)
Query: 390 PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP 449
PTT GP AP P G L+ P+ S ++ + P PP
Sbjct: 2756 RPARPPTTAGPPAPAPPA----APAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAV 2811
Query: 450 GPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPP-----------QNMPQLQP 498
+ L PP P P ++P + P P
Sbjct: 2812 LAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP 2871
Query: 499 PSHLPMLQHPHISR-----PPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQM 553
+ P + R +P P P P + P P P Q
Sbjct: 2872 AAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931
Query: 554 APPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMM 613
PP P P P G G ++
Sbjct: 2932 PPPPP---------------------PRPQPPLAPTTDPAGAGEPSGAVPQPWLGA--LV 2968
Query: 614 PGYNPFQSGNQSGMAP----PPPPGPPPHGQS 641
PG AP P PP G S
Sbjct: 2969 PGRVAVPRFRVPQPAPSREAPASSTPPLTGHS 3000
|
Length = 3151 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 30/191 (15%), Positives = 43/191 (22%), Gaps = 22/191 (11%)
Query: 444 APPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP 503
P P P L Q P QQ P P P P
Sbjct: 54 QAPPPVAQLPQPLPQPPPTQALQ-ALPAGDQQQHNTPTGSPAANPPATFALPAGPAG--- 109
Query: 504 MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYM 563
P I P Q+ + +P + P + Q A Q Y
Sbjct: 110 ----PTIQTEPGQLYPVQVPVMVTQ-----------NPANSPLDQPAQQRALQQLQQRYG 154
Query: 564 GMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQ--- 620
+ +Q PN P G + + + + +
Sbjct: 155 APASGQLPSQQQSAQKNDESQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRI 214
Query: 621 SGNQSGMAPPP 631
G + G A
Sbjct: 215 KGAEGGGAMKV 225
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 38/184 (20%), Positives = 45/184 (24%), Gaps = 8/184 (4%)
Query: 368 MGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGV--GVAMPLSIPS 425
+ + V AG + P PGP + P P S
Sbjct: 43 LVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAR 102
Query: 426 FDSSAQGEQKQPLSMPLGAPPLPPGP-HPSLLTANQQQGYQQNPPP--MPPQQHQGHPQQ 482
S P P PP P P L+ + PPP PP
Sbjct: 103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAV 162
Query: 483 MPHLAMPPQNMPQLQ-PPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 541
A Q L P P PP SP P +P S S P
Sbjct: 163 ASDAASSRQAALPLSSPEETARAPSSP--PAEPPPSTPPAAASPRPPRRSSPISASASSP 220
Query: 542 VPVG 545
P
Sbjct: 221 APAP 224
|
Length = 1352 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 38/174 (21%), Positives = 52/174 (29%), Gaps = 8/174 (4%)
Query: 436 QPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQ 495
QP + PP P + QQ YQQNPPP Q PQ+ P
Sbjct: 135 QPQAQQPQPPPQVP-QQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPP 193
Query: 496 LQPPSHLPMLQHPHISRPPPQ------MPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGS 549
+P +Q P+ PP Q P M PG P P P Q
Sbjct: 194 NEPLPSSMAMQPPYSGAPPSQQFYGPPQPSPYMYGG-PGGRPNSGFPSGQQPPPSQGQEG 252
Query: 550 MNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAF 603
PP +G++ + G + +P+ M +
Sbjct: 253 YGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVLPQALPMSSAPMSG 306
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 30/195 (15%), Positives = 41/195 (21%), Gaps = 21/195 (10%)
Query: 428 SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHP--QQMPH 485
S L PL PP QQ P P P P
Sbjct: 52 SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPT 111
Query: 486 LAMPPQNMPQLQPPSHLPM------LQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMS 539
+ P + +Q P + L P R Q+ Q P S PS +
Sbjct: 112 IQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQ---RYGAPASGQLPSQQQSA 168
Query: 540 MPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQ 599
+ + Q G + G +
Sbjct: 169 QKND---ESQLQQQPNGETP-----PQQTDGAGDDESEALVRLREADGTLEQRIKGA--E 218
Query: 600 GGAFNRPQGQMPMMP 614
GG + Q
Sbjct: 219 GGGAMKVLKQPKKQA 233
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 70/299 (23%), Positives = 90/299 (30%), Gaps = 53/299 (17%)
Query: 386 PGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSI--------PSFDSSAQGEQKQP 437
P P +P P AP + + G G MP ++ + Q
Sbjct: 242 PPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQ 301
Query: 438 LSMPLGAPPLPPGPHPSLLTANQQQGYQQNP-----PPMPPQQHQGHP------------ 480
+P P PH + QQ P PP P H P
Sbjct: 302 SQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQPLPPAPSMPHIKPPPTTPIPQLPNQS 361
Query: 481 -QQMPHLAMP------PQNMP---QLQPPSHLPMLQHPHISRPPPQ--MPQLGMPSPMPG 528
+ PHL P P N+P L+P S LP HP + PPP MPQ P
Sbjct: 362 HKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPT-HHPPSAHPPPLQLMPQ-SQPLQSVP 419
Query: 529 SLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVG---GFPNGM 585
+ P + S+P + P Q +P SGG P +G P
Sbjct: 420 AQPPVLTQSQSLPPKASTHPHSGLHSGPPQSP--FAQHPFTSGG--LPAIGPPPSLPTST 475
Query: 586 QGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQ-------SGNQSGMAPPPPPGPPP 637
P + P G A G P P Q + PPPP P P
Sbjct: 476 PAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSP 534
|
Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 39/134 (29%), Positives = 48/134 (35%), Gaps = 8/134 (5%)
Query: 418 AMPLSIPSFD-SSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQH 476
A P S+ F+ S + PL P + P P A QQQ Q P P Q+
Sbjct: 719 ANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQY 778
Query: 477 QGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSH 536
Q PQQ +A PQ QP + P Q P P PQ P P P
Sbjct: 779 Q-QPQQ--PVAPQPQYQQPQQPVAPQPQYQQPQ----QPVAPQPQYQQPQQPVAPQPQYQ 831
Query: 537 PMSMPVPVGMQGSM 550
PV Q ++
Sbjct: 832 QPQQPVAPQPQDTL 845
|
Length = 1355 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 232
S D V VWD R + + H + S++W+ SLL + KD + + D + G
Sbjct: 143 SAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202
Query: 233 LCSFHGHKNM--VLCVKWNQNGNWVLT--ASKDQI--IKLYDIRAM 272
+ S H + C+ W + + ++T SK Q I L+D R M
Sbjct: 203 VSSVEAHASAKSQRCL-WAKRKDLIITLGCSKSQQRQIMLWDTRKM 247
|
Length = 493 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 37/173 (21%), Positives = 54/173 (31%), Gaps = 25/173 (14%)
Query: 468 PPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMP 527
PP + ++ Q+ H+ P + LP+ P +PPP+ P P P
Sbjct: 654 PPQVEITPYKPTWTQIGHI---PYQPSPTGANTMLPIQWAPGTMQPPPRAPT---PMRPP 707
Query: 528 GSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQG 587
+ P + P + A P P + G A P P +
Sbjct: 708 AAPPGRAQRPAAATGR----------ARPPAAAPGRARPPAAAPGRARPPAAA-PGRARP 756
Query: 588 PPNSSGPQMYPQ---GGAFNRPQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPP 637
P + G P G +P Q P P P + P PPP P
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP-----RGAPTPQPPPQAGP 804
|
Length = 991 |
| >gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1 | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 26/146 (17%), Positives = 35/146 (23%), Gaps = 10/146 (6%)
Query: 366 FNMGQNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFAPGLTRN-EGTIPGVGVAMPLSIP 424
Q + +P P P P + PG+ MP P
Sbjct: 201 PGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMP---P 257
Query: 425 SFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMP 484
Q +Q+ P PP Q PPP PQ Q
Sbjct: 258 PPPQPPQQQQQPPQPQAQP-PPQNQPTPH---PGLPQGQNAPLPPPQQPQLLPLVQQPQG 313
Query: 485 HLAMP--PQNMPQLQPPSHLPMLQHP 508
P + + QL + Q
Sbjct: 314 QQRGPQFREQLVQLSQQQREALSQEE 339
|
Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 5e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
L+ H + S+ +S + N + SG D G ++ W
Sbjct: 6 TLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 25/174 (14%), Positives = 34/174 (19%), Gaps = 8/174 (4%)
Query: 386 PGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAP 445
P P P G + T G A P + + + G Q L
Sbjct: 63 PQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATFALPAGPAGPTIQTEPGQLYPV 122
Query: 446 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPML 505
+P + + Q QQ QQ G P Q Q S L
Sbjct: 123 QVPVMVTQNPANSPLDQPAQQRALQQ-LQQRYGAPASGQ--LPSQQQSAQKNDESQL--- 176
Query: 506 QHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQ 559
Q ++Q
Sbjct: 177 --QQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVLKQ 228
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 36/169 (21%), Positives = 44/169 (26%), Gaps = 11/169 (6%)
Query: 445 PPLPPGP-HPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLP 503
PP P P P + Q P + P A P P P
Sbjct: 697 PPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARP 756
Query: 504 MLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYM 563
P +RPP P P P P + P P P P P PP M
Sbjct: 757 PAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTP---------QPPPQAGPTSM 807
Query: 564 GMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQM-YPQGGAFNRPQGQMP 611
+ P + G P + G P + P G P
Sbjct: 808 QLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTP 856
|
Length = 991 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 22/108 (20%), Positives = 30/108 (27%), Gaps = 17/108 (15%)
Query: 427 DSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQ-----QHQGHPQ 481
D+S KQ + P P PS A Q + P Q G P
Sbjct: 368 DASGGRGPKQHIKPVFTQPA--AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425
Query: 482 QMPHL------AMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQLGMP 523
+ PP PQ P+ + P ++ LG
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKI----PVSKVSSLGPS 469
|
Length = 614 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 6e-04
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
Query: 391 LPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPPG 450
L +GP P F P + + V P + Q + +QP P P
Sbjct: 736 LDDGPHEP-LFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQ---PVAPQPQY 791
Query: 451 PHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPM--LQHP 508
P A Q Q YQQ P+ PQ PQQ P P PQ QP + P L HP
Sbjct: 792 QQPQQPVAPQPQ-YQQPQQPVAPQPQYQQPQQ-PVAPQPQYQQPQ-QPVAPQPQDTLLHP 848
Query: 509 HISRP----PPQMPQLGMPS 524
+ R P P +PS
Sbjct: 849 LLMRNGDSRPLHKPTTPLPS 868
|
Length = 1355 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 58/262 (22%), Positives = 74/262 (28%), Gaps = 18/262 (6%)
Query: 383 GRMPGNFPLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPL 442
GR P+ P + P P P SA P +
Sbjct: 2671 GRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 443 GAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHL 502
+P LP P P + A P PP G P P A P P+ +
Sbjct: 2731 ASPALPAAPAPPAVPAGPATPGGPARPARPPTT-AGPPAPAPP-AAPAAGPPRRLTRPAV 2788
Query: 503 PMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPV-PVGMQGSMNQMAPPMQQGH 561
L S P P P P P + P + P P+ S APP G
Sbjct: 2789 ASLSESRESLPSPWDPA---DPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
Query: 562 YMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQS 621
P+ GG P G + P S + A RP + P
Sbjct: 2846 PPPSLPL--GGSVAP---GGDVRRRPPSRSPAAKP----AAPARPPVRRLARP---AVSR 2893
Query: 622 GNQSGMAPPPPPGPPPHGQSQQ 643
+S PP P PP Q+
Sbjct: 2894 STESFALPPDQPERPPQPQAPP 2915
|
Length = 3151 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 21/146 (14%), Positives = 28/146 (19%), Gaps = 28/146 (19%)
Query: 513 PPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGG 572
P P +P P+P PT + + Q G +
Sbjct: 53 PQAPPPVAQLPQPLPQPPPTQALQAL-------------PAGDQQQHNTPTGSPAANPPA 99
Query: 573 GAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFN-------RPQGQMP--------MMPGYN 617
G +Q P P P N +P Q P
Sbjct: 100 TFALPAGPAGPTIQTEPGQLYPVQVPVMVTQNPANSPLDQPAQQRALQQLQQRYGAPASG 159
Query: 618 PFQSGNQSGMAPPPPPGPPPHGQSQQ 643
S QS
Sbjct: 160 QLPSQQQSAQKNDESQLQQQPNGETP 185
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
| >gnl|CDD|218191 pfam04652, DUF605, Vta1 like | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 30/154 (19%), Positives = 42/154 (27%), Gaps = 19/154 (12%)
Query: 404 GLTRNEGTIPGVGVAMPLSIPSF-DSSAQGEQKQPLSMPLGAPP--LPPGPHPSLLTANQ 460
G N G + D+S GE P S PP P P +
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204
Query: 461 QQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHPHISRPPPQMPQL 520
+ PP P PP + PS P P P +
Sbjct: 205 SSPSDSSLPPAPS----SFQSD-----TPPPSPESPTNPSPPP-------GPAAPPPPPV 248
Query: 521 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMA 554
P+ + PTP S + G+ + +A
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGGITLDDDAIA 282
|
Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 6/98 (6%)
Query: 465 QQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPML----QHPHISRPPPQMPQL 520
QQ+PP Q H P + PQ P + P M P++ +P Q Q
Sbjct: 44 QQHPPTHTLQPHHHIPVLPAQQPVVPQQ-PLMPVPGQHSMTPTQHHQPNLPQPAQQPFQP 102
Query: 521 GMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQ 558
P P P+ P+ PMQ
Sbjct: 103 QPLQPPQPQQPMQPQPPVHPIPPL-PPQPPLPPMFPMQ 139
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 35/135 (25%), Positives = 43/135 (31%), Gaps = 21/135 (15%)
Query: 437 PLSMPLGAPPLPPGPHPSLLTANQ----QQGYQQNPPPMPPQQHQGHPQQMP-------H 485
P+ P+ P P P Q Q YQQ P+ PQ PQQ
Sbjct: 747 PIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQ 806
Query: 486 LAMPPQNMPQLQPPSHL----PMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMP 541
P PQ Q P P Q P P L P M P P + P
Sbjct: 807 PQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKP-TTP 865
Query: 542 VPVGMQGSMNQMAPP 556
+P S++ + PP
Sbjct: 866 LP-----SLDLLTPP 875
|
Length = 1355 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 45/256 (17%), Positives = 59/256 (23%), Gaps = 32/256 (12%)
Query: 390 PLPEGPTTPGPFAPGLTRNEGTIPGVGVAMPLSIPSFDSSAQGEQKQPLSMPLGAPPLPP 449
PLP P P P P + P +
Sbjct: 2616 PLPPDTHAPDPPPPS-PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA 2674
Query: 450 GPH--------PSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSH 501
+ +PPP PP + +PP Q
Sbjct: 2675 QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734
Query: 502 LPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGH 561
LP P P P P PT + P P G ++ P
Sbjct: 2735 LPAAPAP---PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRP----- 2786
Query: 562 YMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMPGYNPFQS 621
+ S + + + P P P G +P P
Sbjct: 2787 -----AVASLSESRESLPSPWDPADPPAAVLAPA--AALPPAASPAGPLPPPTSAQP--- 2836
Query: 622 GNQSGMAPPPPPGPPP 637
APPPPPGPPP
Sbjct: 2837 -----TAPPPPPGPPP 2847
|
Length = 3151 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-------IHNVHDNTVW 330
+GH + L ++P E SGS D +I W + H V+ I H +
Sbjct: 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129
Query: 331 DLAWHPIGY-LLCSGSNDHTTKFW 353
+ W+P+ Y ++CS D W
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIW 153
|
Length = 568 |
| >gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 45/216 (20%), Positives = 53/216 (24%), Gaps = 29/216 (13%)
Query: 443 GAPPLPPGPHPSLLTANQQQGYQQNP--------PPMPPQQHQGHPQQMPHLAMPPQNMP 494
+ + P + P PP P Q QQ A P P
Sbjct: 40 HSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQYP 99
Query: 495 QLQPPSHLPMLQHPHISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMA 554
PP + + + P P P P P P P P Q Q
Sbjct: 100 SQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQ---PPPQVPQQQQYQSP 156
Query: 555 PPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQMPMMP 614
P Q NP AP G +P P S P M M P
Sbjct: 157 PQQPQ---YQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNE--------PLPSSMAMQP 205
Query: 615 GYNPFQSGNQSGMAPPPPP-------GPPPHGQSQQ 643
Y+ Q P P P G P G
Sbjct: 206 PYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSG 241
|
This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357 |
| >gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 19/97 (19%), Positives = 26/97 (26%), Gaps = 15/97 (15%)
Query: 546 MQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNR 605
+Q Q+ P M+Q +PM G P G Q P +P
Sbjct: 371 LQDQFMQLQPRMRQLPMG--SPM-GGAMGQPPYYGQGPQQQFNGQ---PLGWP------- 417
Query: 606 PQGQMPMMPGYNPFQSGNQSGMAPPPPPGPPPHGQSQ 642
M P +G+AP P
Sbjct: 418 --RMSMMPTPMGPGGPLRPNGLAPMNAVRAPSRNAQN 452
|
These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562 |
| >gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 50/246 (20%), Positives = 73/246 (29%), Gaps = 22/246 (8%)
Query: 370 QNQGYGEQNAVFAGRMPGNFPLPEGPTTPGPFA---PGLTRN---EGTIPGVGVAMPLSI 423
Q++ + E+ V + + G+ P P G A P R P +
Sbjct: 233 QDEPFVERRVVISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAA 292
Query: 424 PSFDSSAQGEQKQPLSMPLGAPPLPPGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQM 483
P PL++P P PP P + + G + P+P P+Q
Sbjct: 293 PPDGVWGAALAGAPLALPAPPDPPPPAPAGDAEEEDDEDGAMEVVSPLP------RPRQH 346
Query: 484 PHLAMPPQNMPQLQPPSHLPML---QHPHISRPPPQMPQLGMP---SPM----PGSLPTP 533
L P + P PPS L L +H P + +P G T
Sbjct: 347 YPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPGGDDQTR 406
Query: 534 SSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPMHSGGGAPPQVGGFPNGMQGPPNSSG 593
+ P+ VP + APP P G APP P P
Sbjct: 407 PAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDP 466
Query: 594 PQMYPQ 599
+
Sbjct: 467 DDATRK 472
|
Length = 3151 |
| >gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 446 PLPPGPHPSLLTANQQQGYQQNPPPMPPQQ----HQGHPQQMPHLAMPPQNMPQLQPPSH 501
L P H +L A Q QQ P+P Q Q H +P A P LQPP
Sbjct: 51 TLQPHHHIPVLPAQQPVVPQQPLMPVPGQHSMTPTQHHQPNLPQPAQQPFQPQPLQPPQP 110
Query: 502 LPMLQHPHISRPPPQMPQLGMPSPMPGSLPTP 533
+Q P P +P PM P P
Sbjct: 111 QQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLP 142
|
They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165 |
| >gnl|CDD|107304 cd06309, PBP1_YtfQ_like, Periplasmic binding domain of ABC-type YtfQ-like transport systems | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 88 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN 127
I SQ+G+FT G+ E +L+AH I V++HND
Sbjct: 158 IVASQTGDFTRAKGKEV-MEALLKAHGDDI-DAVYAHNDE 195
|
Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally. Length = 273 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 32/201 (15%), Positives = 45/201 (22%), Gaps = 20/201 (9%)
Query: 449 PGPHPSLLTANQQQGYQQNPPPMPPQQHQGHPQQMPHLAMPPQNMPQLQPPSHLPMLQHP 508
GP P A +G PP++ P A P P + P
Sbjct: 588 VGPAPG---AAGGEGPPAPASSGPPEE-AARPAAPAAPAAPAAPAPAGAAAAPAEASAAP 643
Query: 509 HISRPPPQMPQLGMPSPMPGSLPTPSSHPMSMPVPVGMQGSMNQMAPPMQQGHYMGMNPM 568
P+ + P P + AP G
Sbjct: 644 APGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG-------- 695
Query: 569 HSGGGAPPQVGGFPNGMQGPPNSSGPQMYPQGGAFNRPQGQ------MPMMPGYNPFQSG 622
A P G + Q + P +P P P +G
Sbjct: 696 --AAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753
Query: 623 NQSGMAPPPPPGPPPHGQSQQ 643
+ PPP P P +
Sbjct: 754 APAQPPPPPAPAPAAAPAAAP 774
|
Length = 824 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 100.0 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 100.0 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 100.0 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.98 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.98 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.97 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.96 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.96 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.96 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.94 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.93 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.92 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.91 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.91 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.9 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.89 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.88 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.88 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.87 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.86 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.85 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.85 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.83 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.83 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.83 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.82 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.82 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.82 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.81 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.79 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.78 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.78 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.77 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.77 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.74 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.74 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.73 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.73 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.71 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.71 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.7 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.7 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.69 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.69 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.68 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.67 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.66 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.65 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.65 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.61 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.6 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.59 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.59 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.56 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.56 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.55 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.54 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.54 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.53 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.52 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.5 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.48 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.47 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.47 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.46 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.46 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.45 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.45 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.44 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.43 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.43 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.42 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.41 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.4 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.39 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.38 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.35 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.34 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.34 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.33 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.31 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.31 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.28 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.28 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.28 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.28 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.28 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.27 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.23 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.23 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.22 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.21 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.19 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.19 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.17 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 99.16 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.16 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.15 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.13 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.12 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 99.11 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.11 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.11 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.1 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.08 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.08 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 99.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.05 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.05 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.05 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 99.02 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.01 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.99 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.95 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.9 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.89 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.88 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.86 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.85 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.84 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.83 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.82 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.79 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.78 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.77 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.73 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.72 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.7 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.67 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.64 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.62 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.62 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.56 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.56 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.54 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.54 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.52 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.5 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.47 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.46 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.46 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.45 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.43 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.38 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.37 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.34 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.34 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.33 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.32 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.31 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.28 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.28 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.26 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.26 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.25 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.23 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.23 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.2 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 98.19 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.17 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.16 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.16 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.14 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.13 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.12 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.1 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.07 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.06 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 98.01 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.99 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.98 | |
| KOG1924 | 1102 | consensus RhoA GTPase effector DIA/Diaphanous [Sig | 97.97 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.9 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.89 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.87 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.82 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.81 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.81 | |
| PRK10115 | 686 | protease 2; Provisional | 97.81 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.77 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.72 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.68 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.67 | |
| PRK10115 | 686 | protease 2; Provisional | 97.67 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.64 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.64 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.62 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.55 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 97.53 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.53 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.51 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.5 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.48 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.47 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.45 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.4 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.4 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.38 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.38 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.33 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.33 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 97.29 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.29 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.28 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.28 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.26 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.24 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.23 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.23 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.11 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.09 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.08 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 97.06 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 97.04 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.98 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.96 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.95 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.93 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.87 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.86 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.75 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 96.74 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 96.7 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.69 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.64 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.57 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 96.54 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.46 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 96.46 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.43 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.43 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 96.33 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.33 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.3 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 96.28 | |
| PLN02153 | 341 | epithiospecifier protein | 96.25 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 96.25 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 96.18 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 96.13 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 96.1 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.03 | |
| PLN02153 | 341 | epithiospecifier protein | 96.02 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 95.93 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 95.91 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 95.87 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.86 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 95.84 | |
| COG1506 | 620 | DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept | 95.76 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.75 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 95.74 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 95.69 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 95.69 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 95.64 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 95.62 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.6 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.5 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 95.49 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 95.48 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.37 | |
| PLN02193 | 470 | nitrile-specifier protein | 95.33 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 95.31 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 95.25 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 95.2 | |
| KOG1984 | 1007 | consensus Vesicle coat complex COPII, subunit SFB3 | 95.15 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.13 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.12 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 95.07 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.06 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.06 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 95.05 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 95.03 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.95 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 94.92 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 94.9 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.83 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.78 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 94.77 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.76 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.75 | |
| KOG2893 | 341 | consensus Zn finger protein [General function pred | 94.73 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 94.71 | |
| PLN02193 | 470 | nitrile-specifier protein | 94.69 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 94.68 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 94.67 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 94.62 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.61 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 94.47 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.44 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 94.41 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.34 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.27 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 94.24 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 94.16 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 94.16 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 93.95 | |
| PRK13979 | 957 | DNA topoisomerase IV subunit A; Provisional | 93.88 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 93.84 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.83 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.82 | |
| KOG0132 | 894 | consensus RNA polymerase II C-terminal domain-bind | 93.74 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 93.73 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 93.65 |
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-56 Score=438.00 Aligned_cols=369 Identities=60% Similarity=1.089 Sum_probs=352.7
Q ss_pred CCccCcccccchhhhHHhheeEEEeeccCcCccccccCchhhhcCccceEeecCCCCceeecEEEEeecCCCCCeEEEEE
Q 006497 1 MRKLTQRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLW 80 (643)
Q Consensus 1 ~rk~~~rr~~~~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~ 80 (643)
|||...||.|||++.++++.+.|.|+.+ +++.+++....+..++++...+.++...++..+|++....+-++.|..|.|
T Consensus 26 lrk~~~Rr~VDy~s~v~~~~~nR~~~~~-~d~~~~~p~~~~~~~~~pp~~~~~dp~~~~~tKf~h~s~NKvkc~V~~v~W 104 (464)
T KOG0284|consen 26 LRKPVARRTVDYNSPVCNYRQNRRWQYD-RDRALLQPDSSYIIDLVPPSLYLDDPSSAFTTKFVHTSSNKVKCPVNVVRW 104 (464)
T ss_pred ccchhhhcccCCCcHHHHHHHHHhhccc-ccccccCCCchhhhcccChhhccCCcccccccceEeccccccccceeeEEE
Confidence 7999999999999999999999999999 889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeE
Q 006497 81 TPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVR 160 (643)
Q Consensus 81 spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~ 160 (643)
.|+|+.|++|+..|.+.||+..+...+..++.|+..|+++.|+.++.++++|+.+|.|++|+.+...++.....|...|+
T Consensus 105 tPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIR 184 (464)
T KOG0284|consen 105 TPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIR 184 (464)
T ss_pred cCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhh
Confidence 99999999999999999999988888888999999999999999999999999999999999888777766666779999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCC
Q 006497 161 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240 (643)
Q Consensus 161 ~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~ 240 (643)
+++|++++..|++|++||+|+|||....++...+.+|...|++++|+|...+|++++.|..|++||.+++.++.++..|+
T Consensus 185 dlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK 264 (464)
T KOG0284|consen 185 DLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK 264 (464)
T ss_pred eeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEE
Q 006497 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320 (643)
Q Consensus 241 ~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 320 (643)
..|..+.|++++++|++++.|..+++||+++.+++.++++|++.|++++|+|.+..+|.+|+.||.|.+|.+...+.+..
T Consensus 265 ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~ 344 (464)
T KOG0284|consen 265 NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE 344 (464)
T ss_pred ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred EecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccccccccCC
Q 006497 321 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQ 370 (643)
Q Consensus 321 ~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~ 370 (643)
+..+|+..|++++|+|-|.+|++|+.|.++++|..+++++..........
T Consensus 345 i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp~d~~~~~~~~~~ 394 (464)
T KOG0284|consen 345 IPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRPGDKNADDVGLSN 394 (464)
T ss_pred CCcccccceeeeeccccceeEeecCCCcceeeeccCCCCCcccccccccc
Confidence 99999999999999999999999999999999999999888776554443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-47 Score=366.82 Aligned_cols=288 Identities=28% Similarity=0.526 Sum_probs=262.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
...++.+|...|.|+.|+|+++.|++|+.|.++++||+.+.....+.++|...|.|++|+||++.||+|+.||.|++||.
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp 186 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP 186 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCce-EEeecCCCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 144 NMNNV-KANKSAHKESVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 144 ~~~~~-~~~~~~~~~~I~~l~~s~-----d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
++++. ...+.+|...|++|+|.| ..++||+++.||.|+|||+..+.++..+.+|...|+|+.|-- ..+|++++
T Consensus 187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-~gliySgS 265 (480)
T KOG0271|consen 187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-EGLIYSGS 265 (480)
T ss_pred CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-CceEEecC
Confidence 88764 456789999999999976 567899999999999999999999999999999999999974 35899999
Q ss_pred CCCcEEEEECCCCceeEE--------------------------------------------------------------
Q 006497 218 KDSLVKLWDAKSGRELCS-------------------------------------------------------------- 235 (643)
Q Consensus 218 ~dg~I~iwD~~~~~~~~~-------------------------------------------------------------- 235 (643)
.|++|++|+...|+.++.
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 999999998766443221
Q ss_pred -----------------eccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEE
Q 006497 236 -----------------FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 236 -----------------~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l 298 (643)
..+|...|+.+.|+||+++|++++.|..|++||.++++.+.+|++|-..|+.++|+. +.++|
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLl 424 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLL 424 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEE
Confidence 124556689999999999999999999999999999999999999999999999998 89999
Q ss_pred EEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
++|+.|.++++||+++.+....+. +|.+.|.++.|++||..+++|+.|..+++|.
T Consensus 425 VS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999998776655544 6999999999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-45 Score=359.33 Aligned_cols=287 Identities=25% Similarity=0.415 Sum_probs=273.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCC--CCEEEEEeCCCcEEEEECC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN--DNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~--~~~L~sg~~dg~V~iwd~~ 144 (643)
+-.+-+.+|..+.|+.|++.|+||+.+|.++||+..+...+.++.+|...|.++.|+|. +..||+|+.||+|++|+++
T Consensus 170 SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 170 SQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred hhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 33466789999999999999999999999999999999999999999999999999997 5689999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
+...+..+.+|...|..++|+|+|++|++++.|.+-++||++++.++....+|...|.+|+|++||.++++|+.|..-+|
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~Rv 329 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRV 329 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
||+++++++..+.+|...|.+|+|+|+|..|++|+.|++++|||++..+++.++..|.+-|+.|+|+|..+.+|++++.|
T Consensus 330 WDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 330 WDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred eecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred CcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 305 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 305 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
++++||..++...+ ..+.+|++.|.++.+++|+..|++++.|.++++|.
T Consensus 410 ~t~kiWs~~~~~~~-ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRTWSPL-KSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCCcccc-hhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 99999998766554 45568999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=322.75 Aligned_cols=288 Identities=25% Similarity=0.404 Sum_probs=267.9
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
..++|++|.+.|.++.|+.|.++|++++.||.+.|||.-+.+.+..+......|..++|+|.++++|+|+.|+.+.||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34889999999999999999999999999999999999998888888888999999999999999999999999999998
Q ss_pred CCC------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEE
Q 006497 144 NMN------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSG 216 (643)
Q Consensus 144 ~~~------~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sg 216 (643)
.+. .+.+.+.+|.+.+.|+.|.. +..|++++.|.++.+||+++++.+..+.+|...|.+|+++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 855 45667889999999999986 56799999999999999999999999999999999999999 99999999
Q ss_pred ECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC--CCCeEEEEEecCC
Q 006497 217 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH--RKDVTALAWHPFH 294 (643)
Q Consensus 217 s~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--~~~I~~l~~sp~~ 294 (643)
+.|+..+|||+|++.++++|.+|+..|++|+|.|+|.-|++|++|+++++||+|..+.+..|... ...|++++|+. .
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~-S 284 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSK-S 284 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcc-c
Confidence 99999999999999999999999999999999999999999999999999999999998888733 35799999998 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 295 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
+++|++|..|.++.+||.-+.+. ...+.+|++.|+++..++||..|++|+.|.+|+||.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~-vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGER-VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccEEEeeecCCceeEeeccccce-EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999855544 455568999999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=302.72 Aligned_cols=292 Identities=21% Similarity=0.320 Sum_probs=256.0
Q ss_pred cEEEEeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-----CceEEEEccCCCCEEEEEEcCCCCEEEEEeCC
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 135 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~-----~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d 135 (643)
..++.++++|.+.|+.++....+ ..|++++.|.++.+|++.. +..++.+++|+..|..+..++|+++.++++.|
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD 84 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWD 84 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecccc
Confidence 45678899999999999998874 6788999999999998653 56789999999999999999999999999999
Q ss_pred CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-CCCeEEEEEcCC--CCE
Q 006497 136 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPT--KSL 212 (643)
Q Consensus 136 g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~V~~l~~sp~--~~~ 212 (643)
+++++||+.+++....+.+|...|.+++|++|++.|++++.|.+|++||+............ .+.|+|+.|+|+ +.+
T Consensus 85 ~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 85 GTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred ceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcE
Confidence 99999999999999999999999999999999999999999999999998765444333332 678999999998 569
Q ss_pred EEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 006497 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 292 (643)
Q Consensus 213 l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp 292 (643)
|++++.|++|++||+++.+....+.+|...++.+++++||.++++|+.||.+.+||++.++.+..+. +...|.+++|+|
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fsp 243 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSP 243 (315)
T ss_pred EEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999987776 788999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcceEEEecc--------cCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 293 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 293 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
+...|+.+. +..|+|||++....+..+... ..-...+++|+.||..|++|-.|+.|++|.+.
T Consensus 244 -nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 244 -NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -CceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 555555554 557999999887655443321 12246788999999999999999999999874
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=306.48 Aligned_cols=293 Identities=23% Similarity=0.366 Sum_probs=272.0
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
.+.+.+.+|.+.|.||++.|.+.+|++|+.|++|+|||+.++++..++.+|...|..+++++-..||++++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 35577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 143 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
++.+++++.+.+|-..|.|++.+|....|++++.|.+++|||+++...+..+.+|...|..+.+.+.+-.+++|+.|++|
T Consensus 222 Le~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tv 301 (460)
T KOG0285|consen 222 LEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTV 301 (460)
T ss_pred chhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
++||++.++...++..|+..|.+++.+|....+++++.| .|+-|++..++.+..+.+|...|++++.+. +.++++|+
T Consensus 302 rlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~ns--D~v~~~G~ 378 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNS--DGVLVSGG 378 (460)
T ss_pred EEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeecc--CceEEEcC
Confidence 999999999999999999999999999999999999877 599999999999999999999999999984 78999999
Q ss_pred CCCcEEEEECCCCcceEEEec-------ccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 303 LDGSIFHWLVGHETPQVEIHN-------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 303 ~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
++|.+.+||.+++........ ..+..|.+.+|...+..|++|..|.+|++|.-++.
T Consensus 379 dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 379 DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred CceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccc
Confidence 999999999987755433311 13457999999999999999999999999986553
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=308.42 Aligned_cols=290 Identities=20% Similarity=0.387 Sum_probs=272.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
+...+.+|+..|+.+-|+|+-..++++++|++|++||..+++++..+++|.+.|.+|+|+..|++|++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 144 NM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 144 ~~-~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
++ .++++.+.+|+..|.+++|.|.+.+|++++.|.+|+.||+.++.++.++.+|...|..++.+.||.++++++.|.+|
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl 259 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTL 259 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceE
Confidence 87 56677778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCC----------C-----CEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEE
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQN----------G-----NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~~~~~i~~l~~sp~----------g-----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
++|-+.++++...+..|...|.|++|.+. + .++++++.|++|++||+.++.++.++.+|...|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999999888999999999999999763 2 48999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 288 l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
++|+| ++++|+++.+|+++++||+++......+. .|...|+++.|+.+..++++|+-|-++++|..
T Consensus 340 ~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcC-CCeEEEEEecCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999 99999999999999999998777665555 89999999999999999999999999999963
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=317.38 Aligned_cols=247 Identities=22% Similarity=0.378 Sum_probs=239.5
Q ss_pred EEEeecCCCCCeEEEEEcCC--CCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
...+|.+|...|.++.|+|. +..||+|+.||+|++|++++...+..+.+|...|..++|+|+|++|+|++.|.+-++|
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW 288 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW 288 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc
Confidence 45789999999999999997 5689999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
|++++..+....+|...|.+++|.+||..+++|+.|..-+|||+++++++..+.+|...|.+|+|+|+|-.||+|+.|++
T Consensus 289 D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 289 DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc
Confidence 99999998888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEE
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
++|||++..+.+.++.+|.+.|+.|+|++ .|.+|++++.|++++||..+++.+++.+.+|++.|.++.+++ ++.+|++
T Consensus 369 ~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t 447 (459)
T KOG0272|consen 369 CKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIAT 447 (459)
T ss_pred EEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEE
Confidence 99999999999999999999999999998 788999999999999999999999999999999999999999 8999999
Q ss_pred EeCCCcEEEEE
Q 006497 301 GSLDGSIFHWL 311 (643)
Q Consensus 301 gs~dg~I~iwd 311 (643)
++.|.++++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=306.90 Aligned_cols=287 Identities=30% Similarity=0.520 Sum_probs=264.0
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
+.+++|++.|++++|++++++|++++.||.|++||..+.+....+..|...+.++.|++++++|++++.|+.|++||+++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45679999999999999999999999999999999999888888899999999999999999999999999999999998
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iw 225 (643)
++....+..|...|.++.|+++++++++++.|+.|++||+++.+....+..|...|.+++|++++.++++++.|+.|++|
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 162 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEE
Confidence 88888888888899999999998888888889999999999888888888888899999999998888888889999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCC
Q 006497 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 305 (643)
Q Consensus 226 D~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg 305 (643)
|+++++.+..+..+...|.+++|+++++.|++++.|+.|++||+++++.+..+..+...+.+++|++ ++.++++++.|+
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 241 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLASGSEDG 241 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcC-CCcEEEEEcCCC
Confidence 9999888888888888999999999999999999999999999999999999888889999999999 588888888899
Q ss_pred cEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 306 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 306 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
.|++||+.+......+. .|...|.+++|++++.+|++++.|+.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999998766554444 6888999999999999999999999999996
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=308.57 Aligned_cols=297 Identities=25% Similarity=0.433 Sum_probs=263.5
Q ss_pred cchhhhHHhheeEEEeeccCcCccccccCchhhhcCccceEeecCCCCceee--------------cEEEEeecCCCCCe
Q 006497 10 VDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAA--------------KFVHTSLNKNRCSI 75 (643)
Q Consensus 10 ~~~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~l~~h~~~I 75 (643)
-.+..+-..+.++|+|+++.+. -..+...+..++..++++.+....... ..+-+.|.+|+..|
T Consensus 127 g~~l~tGsGD~TvR~WD~~TeT---p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~I 203 (480)
T KOG0271|consen 127 GSRLVTGSGDTTVRLWDLDTET---PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWI 203 (480)
T ss_pred CceEEecCCCceEEeeccCCCC---cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccce
Confidence 3455566788899999998764 223445677888888888776644322 34567899999999
Q ss_pred EEEEEcC-----CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 76 NRVLWTP-----TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 76 ~~i~~sp-----dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
++++|.| ..++||+++.||.|+|||+..+.++..+.+|+..|+|++|--+ .+|++++.|++|++|+...+.+..
T Consensus 204 t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r 282 (480)
T KOG0271|consen 204 TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCR 282 (480)
T ss_pred eEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHH
Confidence 9999976 5679999999999999999999999999999999999999744 599999999999999999999999
Q ss_pred eecCCCCCeEEEEEecC------------------------------------CCEEEEEeCCCcEEEEECCC-CeeeeE
Q 006497 151 NKSAHKESVRDLSFCRT------------------------------------DLKFCSCSDDTTVKVWDFAR-CQEERS 193 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d------------------------------------~~~l~s~s~dg~I~iwdl~~-~~~~~~ 193 (643)
++++|...|+.|+.+-| ++.|+++++|.++.+|+-.. .+.+..
T Consensus 283 ~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r 362 (480)
T KOG0271|consen 283 ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR 362 (480)
T ss_pred hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhh
Confidence 99999999999998721 23599999999999999744 447778
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 273 (643)
..+|...|+.+.|+||+++|++++.|..|++||-++|+.+.+|.+|-..|..++|+.|.++|++|+.|.++++||+++.+
T Consensus 363 mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 363 MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred hhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q 006497 274 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311 (643)
Q Consensus 274 ~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd 311 (643)
....+.+|...|.++.|+| ++..+++|+.|..+++|.
T Consensus 443 l~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 LKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ecccCCCCCceEEEEEecC-CCceeecCCCceEEEeec
Confidence 9999999999999999999 899999999999999995
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=284.14 Aligned_cols=275 Identities=18% Similarity=0.314 Sum_probs=246.6
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eEEeecCCCCCeEEE
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDL 162 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~--~~~~~~~~~~~I~~l 162 (643)
-+|++++.|.+|++|...++.+.+++...++.|+.+.+.+|++.||+++. -.|++||+++++ .+..+.+|...|+++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47899999999999999999999999988999999999999999998886 569999998875 577889999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEec-cCCC
Q 006497 163 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKN 241 (643)
Q Consensus 163 ~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~ 241 (643)
.|..+++.++++++||+++|||++...+.+.+. +...|+++..+|+...|+++..+|.|++||+.+..+...+. ....
T Consensus 90 gF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 999999999999999999999999976666666 66899999999999999999999999999999886666553 3456
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCC------eEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 006497 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 242 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
.|.++...+||.+|+.+...|.+++|++-+. +.+..|+.|...+..+.+|| +.++|++++.|.+++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCc
Confidence 7999999999999999999999999998653 44677889999999999999 8999999999999999999887
Q ss_pred cceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcc
Q 006497 316 TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTA 362 (643)
Q Consensus 316 ~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~ 362 (643)
.+......+|...+++++||.|+.+|++++.|+.+++|++...++.+
T Consensus 248 ~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~ 294 (311)
T KOG0315|consen 248 FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVR 294 (311)
T ss_pred eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceee
Confidence 56666777899999999999999999999999999999997654433
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=306.93 Aligned_cols=280 Identities=24% Similarity=0.479 Sum_probs=259.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
+..|++++|+.+|.+||+|+.||.++||+. ++.++.++..|.++|.+|.|+.+|+||++++.|+++.+||..+++....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQ 313 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEe
Confidence 357999999999999999999999999995 4678889999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 231 (643)
+..|...-.++.|-.+ ..|++++.|+.|+|+.+.....+.++.+|.+.|.+|.|++.+.+|+++++|++++||......
T Consensus 314 f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN 392 (524)
T ss_pred eeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence 9888888788899744 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCC---------CEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe
Q 006497 232 ELCSFHGHKNMVLCVKWNQNG---------NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 232 ~~~~~~~~~~~i~~l~~sp~g---------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
....+..|...|..+.|+|++ ..|++++.|++|++||+..+.++..|..|..+|.+++|++ +++++++|+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs 471 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGS 471 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecC
Confidence 999999999999999999854 4789999999999999999999999999999999999999 899999999
Q ss_pred CCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 303 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 303 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
.||.|.+|+..+.+....... .+.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeeEeccccchheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999988776555543 5679999999999999999999999999873
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=284.62 Aligned_cols=287 Identities=22% Similarity=0.444 Sum_probs=248.4
Q ss_pred EEEEeecCCCCCeEEEEEcCC-CCEEEEEECCCcEEEEeCCC---CceEEEE-ccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 006497 63 FVHTSLNKNRCSINRVLWTPT-GRRLITGSQSGEFTLWNGQS---FNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDDGGA 137 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spd-g~~L~tgs~dg~I~iwd~~~---~~~~~~l-~~h~~~V~~l~~s~~~~~L~sg~~dg~ 137 (643)
...+.+.+|++.|..++|++- |..||+++.|..|+||+... ..+...+ .+|...|++++|+|.|++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 345788999999999999998 88999999999999999874 3344334 369999999999999999999999999
Q ss_pred EEEEECCCC--ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CeeeeEeeccCCCeEEEEEcCCCCE
Q 006497 138 IKYWQNNMN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERSLTGHGWDVKSVDWHPTKSL 212 (643)
Q Consensus 138 V~iwd~~~~--~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~---~~~~~~~~~~~~~V~~l~~sp~~~~ 212 (643)
+.||.-..+ +++..+.+|+..|.|++|+.+|++||+|+.|+.|.||.+.. .++...+..|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999976544 67888899999999999999999999999999999999864 3566788899999999999999999
Q ss_pred EEEEECCCcEEEEECC---CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEE
Q 006497 213 LVSGGKDSLVKLWDAK---SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 289 (643)
Q Consensus 213 l~sgs~dg~I~iwD~~---~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~ 289 (643)
|++++.|.+|++|+-. ...++.++.+|.+.|.+++|++.|..|++++.|++|+||.+.+.- -..|...++.+.
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~ 240 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVP 240 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeee
Confidence 9999999999999866 346789999999999999999999999999999999999876221 123678899999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCC------cceEEEecccCcceEEEEEcCC-CCEEEEEECCCeEEEEecC
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVGHE------TPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd~~ 356 (643)
|. ...|++++.|+.|++|..... +.+......|...|++++|++. .++|+++++||.|++|.+.
T Consensus 241 W~---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 241 WD---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ec---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 96 678999999999999976532 1223355678999999999995 7899999999999999874
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=287.46 Aligned_cols=286 Identities=22% Similarity=0.426 Sum_probs=256.2
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe-CCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd-~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
..+.+|++.|+++.|+|+|.+||+|+.|..|.+|+ ....+....+++|.++|..+.|..|++.|++++.|.+|+.||.+
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~ 120 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE 120 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc
Confidence 45789999999999999999999999999999999 44556677889999999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
+++.....+.|..-|+.+.-+.-+ ..+.+++.|+++++||+++.+.++++. ....++++.|..++..+++|+-|+.|+
T Consensus 121 tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ik 199 (338)
T KOG0265|consen 121 TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIK 199 (338)
T ss_pred cceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCcee
Confidence 999999999999999999866555 456788899999999999888887775 456899999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC----CeEEEEeecCC----CCeEEEEEecCCC
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA----MKELESFRGHR----KDVTALAWHPFHE 295 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~----~~I~~l~~sp~~~ 295 (643)
+||++.+..+..+.+|.+.|+.+..+++|.++++-+.|.++++||++- .+++..+.++. .....++|+| ++
T Consensus 200 vWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~ 278 (338)
T KOG0265|consen 200 VWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NG 278 (338)
T ss_pred eeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CC
Confidence 999999999999999999999999999999999999999999999975 34577777654 4567889999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
..+.+|+.|..+++||..... ++..+.+|.+.|++++|+|...+|.+++.|.+|++=.
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~-~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRR-ILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred CccccccccceEEEeeccccc-EEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 999999999999999985544 4455567999999999999999999999999998743
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=281.41 Aligned_cols=247 Identities=26% Similarity=0.409 Sum_probs=221.0
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
..+.++||+..|+.++.++||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|++
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt 134 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT 134 (315)
T ss_pred eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEeecCC-CCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 144 NMNNVKANKSAH-KESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 144 ~~~~~~~~~~~~-~~~I~~l~~s~d--~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
............ .+.|+|+.|+|+ +.+|+++++|++|++||+++.+....+.+|...++.+++++||.++++|+.||
T Consensus 135 ~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg 214 (315)
T KOG0279|consen 135 LGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDG 214 (315)
T ss_pred cccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCc
Confidence 765544444333 889999999998 67899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC---------CCCeEEEEEe
Q 006497 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH---------RKDVTALAWH 291 (643)
Q Consensus 221 ~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~---------~~~I~~l~~s 291 (643)
.+.+||++.++.+..+. +...|.+++|+|+.-+|+.+. +..|+|||+.+++++.+++.. .-...+++|+
T Consensus 215 ~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 215 EAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred eEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 99999999999988876 778899999999977666665 556999999999888776522 2235678999
Q ss_pred cCCCCEEEEEeCCCcEEEEECC
Q 006497 292 PFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 292 p~~~~~l~sgs~dg~I~iwd~~ 313 (643)
. ++..|++|..|+.|++|.+.
T Consensus 293 ~-dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 293 A-DGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred C-CCcEEEeeecCCcEEEEEee
Confidence 8 89999999999999999874
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=320.90 Aligned_cols=290 Identities=27% Similarity=0.477 Sum_probs=260.3
Q ss_pred EEeecC-CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc--eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 65 HTSLNK-NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 65 ~~~l~~-h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
...+.+ |...|+|+.|+++|++|++++.|+.+++|+..+.+ ....+.+|...|.+++|++++++|++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 444444 48899999999999999999999999999997777 777788999999999999999999999999999999
Q ss_pred EC-CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 142 QN-NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 142 d~-~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
|+ ..+..+.++.+|...|++++|+++++.+++|+.|++|+|||+++++++..+.+|...|++++|++++++|++++.|+
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~ 310 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDG 310 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCc
Confidence 99 55588899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCc--eeEEeccCCCc--EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCe---EEEEEecC
Q 006497 221 LVKLWDAKSGR--ELCSFHGHKNM--VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPF 293 (643)
Q Consensus 221 ~I~iwD~~~~~--~~~~~~~~~~~--i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I---~~l~~sp~ 293 (643)
.|+|||+.++. ++..+..+... +++++|++++++|++++.|+.+++||++.++.+..+..|...+ .+...+.
T Consensus 311 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 389 (456)
T KOG0266|consen 311 TIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLST- 389 (456)
T ss_pred cEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccC-
Confidence 99999999998 55666666555 9999999999999999999999999999999999999888754 3334444
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcceEEEeccc-CcceEEEEEcCCCCEEEEEE--CCCeEEEEecC
Q 006497 294 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGS--NDHTTKFWCRN 356 (643)
Q Consensus 294 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~d~~~L~sgs--~Dg~V~iWd~~ 356 (643)
++.++++|+.|+.|++||+.+...+ .....| ...|..+.|++..+++++++ .|+.|++|..+
T Consensus 390 ~~~~i~sg~~d~~v~~~~~~s~~~~-~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 390 GGKLIYSGSEDGSVYVWDSSSGGIL-QRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCCeEEEEeCCceEEEEeCCccchh-hhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 7899999999999999999875444 444567 88899999999999999998 79999999864
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=304.41 Aligned_cols=300 Identities=22% Similarity=0.370 Sum_probs=272.4
Q ss_pred eeecEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC-Cc
Q 006497 59 FAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG-GA 137 (643)
Q Consensus 59 ~~~~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d-g~ 137 (643)
+..+.....+......|+|.+|++..+.||+|-.+|.+.+|++....+++.+.-....|..++|+..|++||.|+.. |.
T Consensus 252 ~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQ 331 (893)
T KOG0291|consen 252 FWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQ 331 (893)
T ss_pred EEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccce
Confidence 44444455666677899999999999999999999999999999999999999888999999999999999998765 89
Q ss_pred EEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 138 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 138 V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
+.||++.+...+.+..+|...++++++++||.++|+|++||+|+|||..++-+..++..|...|+.+.|+..++.+++.+
T Consensus 332 LlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 332 LLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEeccC-CCcEEEEEEcCCCCEEEEEECCC-cEEEEECCCCeEEEEeecCCCCeEEEEEecCCC
Q 006497 218 KDSLVKLWDAKSGRELCSFHGH-KNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 295 (643)
Q Consensus 218 ~dg~I~iwD~~~~~~~~~~~~~-~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 295 (643)
-||+|+.||+...+..+++... .....|++..+.|.++++|+.|. .|.||++.+|+.+..+.+|+++|.+++|++ .+
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~ 490 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DG 490 (893)
T ss_pred cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-cc
Confidence 9999999999999999988743 34578899999999999998876 699999999999999999999999999999 78
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
..|++++.|.+|++||+-......+... +...+.+++|+|||+.|++++.||.|.+||.+...+
T Consensus 491 ~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred CeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 9999999999999999966655555443 466899999999999999999999999999875444
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=318.47 Aligned_cols=244 Identities=20% Similarity=0.418 Sum_probs=231.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-------------------------------ceEEEEccCCCCEEEE
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-------------------------------NFEMILQAHDHAIRSM 120 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~-------------------------------~~~~~l~~h~~~V~~l 120 (643)
...++|+.|+.|++.||.|..|..|++|.+... ...+++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 346999999999999999999999999986631 1234577899999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCC
Q 006497 121 VWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 200 (643)
Q Consensus 121 ~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~ 200 (643)
.|+|+.++|++++.|++|++|.+.+...+..+++|..+|+++.|+|.|-+||+++.|++.++|.......++.+.+|...
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsD 537 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSD 537 (707)
T ss_pred eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec
Q 006497 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 280 (643)
Q Consensus 201 V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 280 (643)
|.|+.|+|+.+++++|+.|.+|++||+.+|..++.|.+|.+.|++++|+|+|++|++|+.|+.|.|||+.+++.+..+.+
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 281 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 281 ~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
|.+.|.++.|+. ++.+||+++.|.+|++||+....
T Consensus 618 Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 618 HTGTIYSLSFSR-DGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred ccCceeEEEEec-CCCEEEecCCCCeEEEEEchhhc
Confidence 999999999999 89999999999999999986543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=291.14 Aligned_cols=295 Identities=18% Similarity=0.310 Sum_probs=255.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc---cCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKY 140 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~s~~~~~L~sg~~dg~V~i 140 (643)
++.++..|..-|+|+.|+|||+++|+++.||+|.|||-.+++.+..+. +|.+.|.+|.|+||++.|++++.|.+++|
T Consensus 182 Fk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 182 FKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKI 261 (603)
T ss_pred eeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEE
Confidence 456788899999999999999999999999999999999999999998 89999999999999999999999999999
Q ss_pred EECCCCceEEeecCCC---CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 141 WQNNMNNVKANKSAHK---ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~---~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
||+.+.+++.++.... +.-..+.|- ...|++.+.+|+|.+++....+.+..+.+|...|+++..++|+++|++|+
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sgs 339 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGS 339 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeec
Confidence 9999999888874322 233344454 55799999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEECCCCcee-----------EEec---------------------------cC--------------------
Q 006497 218 KDSLVKLWDAKSGREL-----------CSFH---------------------------GH-------------------- 239 (643)
Q Consensus 218 ~dg~I~iwD~~~~~~~-----------~~~~---------------------------~~-------------------- 239 (643)
.||.|.-||..++..- ..+. .+
T Consensus 340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~ 419 (603)
T KOG0318|consen 340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGT 419 (603)
T ss_pred cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCE
Confidence 9999999998654321 0000 00
Q ss_pred -----------------------CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEeecCCCCeEEEEEecCC
Q 006497 240 -----------------------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFH 294 (643)
Q Consensus 240 -----------------------~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~~~I~~l~~sp~~ 294 (643)
.-...+++++++++.+++|+.|+.|+||.+...+. ......|...|++++++| +
T Consensus 420 avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d 498 (603)
T KOG0318|consen 420 AVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-D 498 (603)
T ss_pred EEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-C
Confidence 01235788999999999999999999999986543 334567999999999999 8
Q ss_pred CCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 006497 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 361 (643)
Q Consensus 295 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~ 361 (643)
+.+|+++...+.|.+||+.+.........-|...|.+++|+|++.+||+|+-|-+|.||+++++.+-
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 9999999999999999998887766666679999999999999999999999999999999887664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=295.70 Aligned_cols=272 Identities=24% Similarity=0.475 Sum_probs=244.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
....|+|+.+. ...+++|..|++|+|||..+..+.+++.+|.+.|.|+.|. .+.|++|+.|.+|+|||+++++.+.
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 56789999996 4469999999999999999999999999999999999985 6699999999999999999999999
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee---eeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 151 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~---~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
++..|.+.|..+.|+ +.++++++.|.+|.+||+..... .+.+.+|...|+.+.|+ .++|++++.|.+|++|++
T Consensus 272 tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~ 347 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST 347 (499)
T ss_pred HHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence 999999999999996 45899999999999999976543 34567899999999996 569999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcE
Q 006497 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307 (643)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I 307 (643)
.+++.++++.+|...|-|+.+ .++++++|+.|.+|++||+..|++++.+++|+.-|.++.| +++.|++|..||+|
T Consensus 348 st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGaYDGki 422 (499)
T KOG0281|consen 348 STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGAYDGKI 422 (499)
T ss_pred cceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeeccccceE
Confidence 999999999999999999987 4889999999999999999999999999999999999999 57899999999999
Q ss_pred EEEECCCCcce--------EEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 308 FHWLVGHETPQ--------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 308 ~iwd~~~~~~~--------~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
++||+...... ......|.+.|..+.| |...|++++.|.+|.|||...
T Consensus 423 kvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~ 478 (499)
T KOG0281|consen 423 KVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLN 478 (499)
T ss_pred EEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCC
Confidence 99999654332 2334558889999999 477899999999999999865
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=294.43 Aligned_cols=288 Identities=21% Similarity=0.452 Sum_probs=255.4
Q ss_pred EeecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC--c--eEEEEc----------cCCCCEEEEEEcCCCCEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF--N--FEMILQ----------AHDHAIRSMVWSHNDNWMV 130 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~-~L~tgs~dg~I~iwd~~~~--~--~~~~l~----------~h~~~V~~l~~s~~~~~L~ 130 (643)
+.+. |+.+|.+++|+|-.. .|++++.|-..++|++... . ....++ ..+..|++++|+.+|..||
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 4444 999999999999776 8999999999999997641 1 111111 1246799999999999999
Q ss_pred EEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCC
Q 006497 131 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 210 (643)
Q Consensus 131 sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~ 210 (643)
+|..||.++||+.. +.++..+..|+++|.+|.|+.++++|++++.|+++.+||..+++....+..|...-.+|.|-. .
T Consensus 252 tG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~ 329 (524)
T KOG0273|consen 252 TGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-N 329 (524)
T ss_pred EeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-C
Confidence 99999999999965 667778889999999999999999999999999999999999999999988887778899974 4
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEE
Q 006497 211 SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290 (643)
Q Consensus 211 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~ 290 (643)
..+++++.|+.|+|+.+...+.+.++.+|.+.|.++.|++.+.+|++++.|++++||+.........+..|...|..+.|
T Consensus 330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCC--------CCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 291 HPFH--------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 291 sp~~--------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+|.+ +..|++++.|++|++||+.....+..+ ..|..+|.+++|++++++|++|+.||.|.+|+...
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 9853 457999999999999999888776664 46999999999999999999999999999999854
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=281.05 Aligned_cols=288 Identities=18% Similarity=0.302 Sum_probs=254.1
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
..++.+|+++|.+++.+|+.++++||+.|..-.||++.+++....+.+|+..|+++.|+.++.+||||+.+|.|+||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
++.....+...-+.|.-+.|+|.+..|+.|+.||.|..|.+.+....+.+.+|...+++=.|.|+|+.++++..||+|++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~ 216 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIV 216 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEE
Confidence 99988888767788999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EECCCCceeEEeccCC---------------------------------------------------CcEEE---EEEcC
Q 006497 225 WDAKSGRELCSFHGHK---------------------------------------------------NMVLC---VKWNQ 250 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~---------------------------------------------------~~i~~---l~~sp 250 (643)
||++++..+.++.... ..+.| +.|+.
T Consensus 217 Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss 296 (399)
T KOG0296|consen 217 WNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSS 296 (399)
T ss_pred EecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccccc
Confidence 9999988776654100 01112 22233
Q ss_pred CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceE
Q 006497 251 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVW 330 (643)
Q Consensus 251 ~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 330 (643)
.-.+.|+|+.||+|.|||+...+..+.+. |...|+.+.|.. ..+|++++.||.|+.||.+++...... .+|...|.
T Consensus 297 ~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y-~GH~~~Il 372 (399)
T KOG0296|consen 297 KLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTY-TGHQMGIL 372 (399)
T ss_pred ccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEE-ecCchhee
Confidence 33567788999999999998766655554 888899999985 788999999999999999988765554 57999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 331 DLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 331 ~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
+++++++.++++|++.|++.+||++.
T Consensus 373 ~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 373 DFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999874
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=272.27 Aligned_cols=275 Identities=20% Similarity=0.335 Sum_probs=241.0
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 006497 106 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185 (643)
Q Consensus 106 ~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl 185 (643)
..+++++|.+.|.++.|+.|.++|++++.||.+.|||.-+...+..+......|..++|+|.++.+|+++.|+...||++
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~l 126 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPL 126 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEec
Confidence 34789999999999999999999999999999999999888888888888899999999999999999999999999999
Q ss_pred CCC------eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcC-CCCEEEEE
Q 006497 186 ARC------QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTA 258 (643)
Q Consensus 186 ~~~------~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~ 258 (643)
.+. ...+.+.+|.+.+.|+.|-. +..|++++.|.++.+||+++++.+..|.+|.+.|.+++++| +++.+++|
T Consensus 127 s~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 127 STRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred ccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 754 34567889999999999986 56799999999999999999999999999999999999999 99999999
Q ss_pred ECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc-cCcceEEEEEcCC
Q 006497 259 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPI 337 (643)
Q Consensus 259 s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~d 337 (643)
+.|+..+|||+|.+.++++|.+|+..|++++|.| ++.-|++|++|++.++||++....+..+... -...|++++||..
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 9999999999999999999999999999999999 8999999999999999999887765554422 2357999999999
Q ss_pred CCEEEEEECCCeEEEEecCCCCCccccccccCCCccccceeeEeeecCCCCC
Q 006497 338 GYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNF 389 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (643)
|++|++|..|.++.+||.-+.+.. +...+++.+..+.....+|..
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~v-------g~L~GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERV-------GVLAGHENRVSCLGVSPDGMA 329 (343)
T ss_pred ccEEEeeecCCceeEeeccccceE-------EEeeccCCeeEEEEECCCCcE
Confidence 999999999999999998442221 223344455655555555433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=265.26 Aligned_cols=283 Identities=23% Similarity=0.359 Sum_probs=250.8
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
..+..|.+.|+++.|+-||+|.++++.|.+|++||...+.+++++.+|...|..++.+.|+..|++|+.|..|.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC--CeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~--~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
++..+.+.+|...|+.+.|+.+...+++++.|.++++||.++ .+.+..+....+.|.+|.+. +..|++|+.||+++
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvR 168 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVR 168 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEE
Confidence 999999999999999999999999999999999999999965 45677787788899999986 67899999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEE--EEecCCCCEEEEE
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL--AWHPFHEEYFVSG 301 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l--~~sp~~~~~l~sg 301 (643)
.||++.++....+. ...|+|++|++|++.+++++.|++|++.|-.+++.+..+++|...-..+ +++. ....+++|
T Consensus 169 tydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~q-sdthV~sg 245 (307)
T KOG0316|consen 169 TYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQ-SDTHVFSG 245 (307)
T ss_pred EEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecc-cceeEEec
Confidence 99999988766554 4569999999999999999999999999999999999999998765544 4444 67889999
Q ss_pred eCCCcEEEEECCCCcceEEEecccCcc-eEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 302 SLDGSIFHWLVGHETPQVEIHNVHDNT-VWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 302 s~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
++||.|++||+.+...+..+.. +... |.+++++|.-..|+++. ++.+.+|.-
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~~-~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLSV-VSTVIVTDLSCHPTMDDFITAT-GHGDLFWYQ 298 (307)
T ss_pred cCCceEEEEEeccceeeeeecc-CCceeEEeeecccCccceeEec-CCceeceee
Confidence 9999999999988877666654 4444 89999999877777765 455666743
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=297.68 Aligned_cols=290 Identities=22% Similarity=0.397 Sum_probs=256.9
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECC-CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQS-GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
..+.--...|..++|+..|.+||.|+.. |.+.||+..+...+...++|...++++++++||.+||+|++||.|+|||..
T Consensus 301 h~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~ 380 (893)
T KOG0291|consen 301 HSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ 380 (893)
T ss_pred EEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEecc
Confidence 4445556789999999999999998765 899999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccC-CCeEEEEEcCCCCEEEEEECCC-cE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKSVDWHPTKSLLVSGGKDS-LV 222 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~-~~V~~l~~sp~~~~l~sgs~dg-~I 222 (643)
.+-+..++..|...|+.+.|+.+++.+++++.||+|+.||+...+..+++.... ....|++.++.|.++++|+.|. .|
T Consensus 381 SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 381 SGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred CceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 999999999999999999999999999999999999999999999988887543 3567999999999999998887 59
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEE
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
.+|++++|+.+-.+.+|+++|.+++|+++++.|++++.|.+|++||+-... .+.++. ....+..++|.| +++.|+++
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrP-dG~elaVa 538 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRP-DGKELAVA 538 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcC-CCCeEEEE
Confidence 999999999999999999999999999999999999999999999986543 344444 778899999999 89999999
Q ss_pred eCCCcEEEEECCCCcceEEEe-------------------cccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 302 SLDGSIFHWLVGHETPQVEIH-------------------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 302 s~dg~I~iwd~~~~~~~~~~~-------------------~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+.||.|.+||.........+. .......+.|+++.||..|++|+..+.|++|++.+
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 999999999986543321111 11235689999999999999999999999999865
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=326.22 Aligned_cols=284 Identities=17% Similarity=0.317 Sum_probs=244.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC----c----eEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcE
Q 006497 68 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF----N----FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAI 138 (643)
Q Consensus 68 l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~----~----~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V 138 (643)
+..|.+.|++++|++++++||+|+.|+.|+|||..+. . ....+. +...|.+++|++. +++|++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4569999999999999999999999999999997532 1 122233 4568999999874 6899999999999
Q ss_pred EEEECCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEc-CCCCEEEEE
Q 006497 139 KYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH-PTKSLLVSG 216 (643)
Q Consensus 139 ~iwd~~~~~~~~~~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~s-p~~~~l~sg 216 (643)
+|||+.+++.+..+..|...|++++|++ ++.+|++++.|++|++||+++...+..+..+ ..|.++.|+ +++.+|++|
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 9999999999889999999999999996 7789999999999999999988888877744 579999995 568999999
Q ss_pred ECCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC------CeEEEEeecCCCCeEEEE
Q 006497 217 GKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTALA 289 (643)
Q Consensus 217 s~dg~I~iwD~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~------~~~~~~~~~~~~~I~~l~ 289 (643)
+.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.|++|+|||++. .+.+..+.+|...+.+++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999999998765 466778899999999997 788999999999999999974 356788999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCcceEEE------------ecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI------------HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------------~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
|++ ++.+|++|+.|+.|++|+.......... ...+...|.+++|++++..|++++.||.|+||++
T Consensus 716 ~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999 6889999999999999998654332211 1234567999999999999999999999999986
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=262.77 Aligned_cols=266 Identities=18% Similarity=0.335 Sum_probs=231.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc--eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
.++...++.|+.+.+.+|++.||+++. -.|++||+.+.+ .+.++.+|...|+++.|..+|+.+++|++||+++|||+
T Consensus 34 rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdl 112 (311)
T KOG0315|consen 34 RTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDL 112 (311)
T ss_pred EEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEec
Confidence 556667788999999999999999884 579999998876 58899999999999999999999999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee-ccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~-~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
+...+.+.+ .+...|+++..+++...|+++..+|.|+|||+.+..+...+. .....|.++.+.+||++++.+...|.+
T Consensus 113 R~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c 191 (311)
T KOG0315|consen 113 RSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC 191 (311)
T ss_pred cCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccE
Confidence 986665554 567999999999999999999999999999998876655544 344679999999999999999999999
Q ss_pred EEEECCCC------ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCC
Q 006497 223 KLWDAKSG------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHE 295 (643)
Q Consensus 223 ~iwD~~~~------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~ 295 (643)
++|++-+. +.+.+++.|...+..+.+|||+++|++++.|.+++||++++. +....+++|...+..++||. ++
T Consensus 192 yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg 270 (311)
T KOG0315|consen 192 YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DG 270 (311)
T ss_pred EEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-Cc
Confidence 99998754 345677889999999999999999999999999999999988 66778889999999999998 89
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEc
Q 006497 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 335 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 335 (643)
.+|++++.|+.+++||+..++..... .+|.....|++..
T Consensus 271 ~YlvTassd~~~rlW~~~~~k~v~qy-~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAGKEVRQY-QGHHKAAVCVALN 309 (311)
T ss_pred cEEEecCCCCceeecccccCceeeec-CCcccccEEEEee
Confidence 99999999999999999887765544 4566666666553
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=286.45 Aligned_cols=291 Identities=17% Similarity=0.340 Sum_probs=249.8
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 140 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~i 140 (643)
....+..|.++|.-+.||++|++||+++.|.+..||++.. .+..+++.+|...|.-+.|+||+++|++|+.|..+.+
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 3467889999999999999999999999999999997543 4457888999999999999999999999999999999
Q ss_pred EECCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-CCCeEEEEEcCCCCEEEEEEC
Q 006497 141 WQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 141 wd~~~~~~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~V~~l~~sp~~~~l~sgs~ 218 (643)
||+.+++....+. ++...+.+++|+||+..+++|+.|+.|..||++.. .+...++. ...|.+++...||+++++.+.
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9999998877663 35788999999999999999999999999999654 33334332 246999999999999999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCC--eEEEEEecCCCC
Q 006497 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEE 296 (643)
Q Consensus 219 dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--I~~l~~sp~~~~ 296 (643)
|..|++|+.++...+..+. ....|++++++.|++++++.-.+..|.+||++..+.+..+.+|+.. |..-+|--.++.
T Consensus 375 d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 9999999998765554443 5567999999999999999999999999999998889999888754 444566655678
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC-CCEEEEEECCCeEEEEecCC
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd~~~ 357 (643)
++++|++|+.|+||+..+++.+ ..+.+|...|++++|+|. -.++|++++||+||||....
T Consensus 454 fiaSGSED~kvyIWhr~sgkll-~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLL-AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEecCCCceEEEEEccCCcee-EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999776654 555679999999999996 47899999999999998764
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=302.60 Aligned_cols=290 Identities=24% Similarity=0.432 Sum_probs=257.2
Q ss_pred EEEeecCCCCCeEEEEEc-CCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 64 VHTSLNKNRCSINRVLWT-PTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~s-pdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
+.+.+-|..+.|.+++|- ++.++||+++..+.+++|+..+..+. .+.+|++.|.++....+|.+|++|+.|.++++|.
T Consensus 315 i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 315 IVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 556778899999999985 56789999999999999998877654 8899999999999666778999999999999998
Q ss_pred CCCCc----eEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeee---e------EeeccCCCeEEEEEcC
Q 006497 143 NNMNN----VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE---R------SLTGHGWDVKSVDWHP 208 (643)
Q Consensus 143 ~~~~~----~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~---~------~~~~~~~~V~~l~~sp 208 (643)
++.+. ++....+|...|.+++++..+ ..|++++.|++|++|++...+.. . ....|+..|+|+++++
T Consensus 394 ~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ 473 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP 473 (775)
T ss_pred ecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC
Confidence 85443 334457899999999998765 56899999999999999662221 1 2246899999999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEE
Q 006497 209 TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 288 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l 288 (643)
+.++|++|+.|.+.+||+++....+.++.+|...|.|+.|++..+.+++++.|.+|+||.+.++.++++|.+|...|..+
T Consensus 474 ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra 553 (775)
T KOG0319|consen 474 NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRA 553 (775)
T ss_pred CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 289 ~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
.|-. ++..|++++.||.|++|++++..++.. +..|++.||+++.+++..+++||+.||.|.+|.=.
T Consensus 554 ~F~~-~~~qliS~~adGliKlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 554 SFIR-NGKQLISAGADGLIKLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred eeee-CCcEEEeccCCCcEEEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 9998 899999999999999999987766544 55799999999999999999999999999999743
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=297.30 Aligned_cols=285 Identities=22% Similarity=0.414 Sum_probs=262.0
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
+.+..+++.|.+|.|+|...+++++-.+|.|.|||.++...++.+.-.+.+|++..|....+++++|++|..|+||+.++
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 44556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeeeEeeccCCCeEEEEEcC-CCCEEEEEECCCcEE
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVK 223 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~-~~~~~~~~~~~~~V~~l~~sp-~~~~l~sgs~dg~I~ 223 (643)
.+.+..+..|.+.|++|+.+|..-+++++++|-+|++||.+. ..+..++.+|+..|.+++|+| |.+.+++++-|++|+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 999999999999999999999999999999999999999965 467789999999999999999 457999999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
||.+.+..+..++++|...|+|++|.+ |..+|++|+.|.+|+|||..+..++.++++|...|.++.|+| .-.+|++|
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp-~lpiiisg 245 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP-ELPIIISG 245 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC-CCcEEEEe
Confidence 999999999999999999999999987 446999999999999999999999999999999999999999 78999999
Q ss_pred eCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 302 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 302 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
++||+|+||+..+-+....+.. .-+.|||++-.+.+..++.|.++|.|.+
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred cCCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999866554444433 3568999999998888888888887654
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=305.32 Aligned_cols=251 Identities=24% Similarity=0.457 Sum_probs=230.7
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------------------------ceEEeecCCC
Q 006497 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-------------------------------NVKANKSAHK 156 (643)
Q Consensus 108 ~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~-------------------------------~~~~~~~~~~ 156 (643)
.++......++|..|+.|+++||.|..|..|++|.+... ....++.+|.
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~ 451 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHS 451 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCC
Confidence 334445678999999999999999999999999986521 1223456899
Q ss_pred CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe
Q 006497 157 ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF 236 (643)
Q Consensus 157 ~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~ 236 (643)
++|..+.|+|+.++|+++++|++|++|.+.+..++..+++|..+|.++.|+|.|-++|+++.|++-++|.....+.++.+
T Consensus 452 GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 452 GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred CceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 237 HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 237 ~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
.+|.+.|.|+.|+|+.+|+++|+.|.+|++||+.++..++.|.+|...|++++|+| ++.+|++|+.||.|.+||+.++.
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999998877
Q ss_pred ceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 317 PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 317 ~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
.+..+. +|.+.|.++.|+.||..||+++.|++|++||+.....
T Consensus 611 ~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 611 LVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred chhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcc
Confidence 665555 5899999999999999999999999999999965433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=277.52 Aligned_cols=252 Identities=28% Similarity=0.496 Sum_probs=236.0
Q ss_pred CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 006497 104 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183 (643)
Q Consensus 104 ~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iw 183 (643)
+++.+.+++|.+.|.|+++.|.+.+|++|+.|++|+|||+.+++++.++.+|...|..+++++...|+++++.|+.|+.|
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCW 220 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEE
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCc
Q 006497 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 263 (643)
Q Consensus 184 dl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 263 (643)
|++..+.++.+.+|-+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+|...|.++.+.+.+..+++|+.|++
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999997788999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEE
Q 006497 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~s 343 (643)
|++||++.++...++..|+..|.+++.+| ....|++++.| .|+-|++-.+..+.. +.+|...|++++.+.|+ ++++
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP-~e~~fASas~d-nik~w~~p~g~f~~n-lsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHP-KENLFASASPD-NIKQWKLPEGEFLQN-LSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCC-chhhhhccCCc-cceeccCCccchhhc-cccccceeeeeeeccCc-eEEE
Confidence 99999999999999999999999999999 78888988877 799999987776666 66799999999998776 7889
Q ss_pred EECCCeEEEEecCCCC
Q 006497 344 GSNDHTTKFWCRNRPG 359 (643)
Q Consensus 344 gs~Dg~V~iWd~~~~~ 359 (643)
|+++|.+.+||.+..-
T Consensus 377 G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCceEEEEEecCcCc
Confidence 9999999999986533
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=279.38 Aligned_cols=248 Identities=26% Similarity=0.497 Sum_probs=236.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
+...+++|.+.|.+|+|+..|++||+++.|=.+++||.++ .++++.+.+|+..|.+++|-|.|++|++++.|.+|+.|+
T Consensus 142 ~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We 221 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWE 221 (406)
T ss_pred hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEe
Confidence 4688999999999999999999999999998899999887 667888889999999999999999999999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCC-------------
Q 006497 143 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT------------- 209 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~------------- 209 (643)
+.++.++..+.+|.+.|..++.+.|+.++++++.|.+|++|-+.+.+++..++.|+..|.|++|.+.
T Consensus 222 ~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~ 301 (406)
T KOG0295|consen 222 CDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGST 301 (406)
T ss_pred cccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999773
Q ss_pred --CCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEE
Q 006497 210 --KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 210 --~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
+.++++++.|++|++||+.++.++.++.+|.++|..++|+|.|+||+++.+|+++++||+++.++.+.+..|..-|++
T Consensus 302 ~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~ 381 (406)
T KOG0295|consen 302 NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTS 381 (406)
T ss_pred CCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEE
Confidence 248999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 288 l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
+.|+. +..++++|+-|-++++|..
T Consensus 382 lDfh~-~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 382 LDFHK-TAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EecCC-CCceEEeccccceeeeeec
Confidence 99998 7789999999999999974
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=295.10 Aligned_cols=310 Identities=21% Similarity=0.355 Sum_probs=254.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCc
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNN 147 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~--~L~sg~~dg~V~iwd~~~~~ 147 (643)
.|+.+|..++|++.+.+|++|+.|+.|+|||+..+.....|++|.+.|.++.|+++-+ .|++|..|+.|++||+++..
T Consensus 103 ~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~ 182 (775)
T KOG0319|consen 103 IHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKR 182 (775)
T ss_pred ccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCc
Confidence 4999999999999999999999999999999999999999999999999999998754 58999999999999998655
Q ss_pred e-EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeee-----------------------------------
Q 006497 148 V-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----------------------------------- 191 (643)
Q Consensus 148 ~-~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~----------------------------------- 191 (643)
. ...+..|.+.|++++|+.|+..+++++.|..|.|||+.+.+..
T Consensus 183 tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 183 TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV 262 (775)
T ss_pred hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence 4 6677899999999999999999999999999999987321100
Q ss_pred --------------------------------------------------------------------------------
Q 006497 192 -------------------------------------------------------------------------------- 191 (643)
Q Consensus 192 -------------------------------------------------------------------------------- 191 (643)
T Consensus 263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence
Q ss_pred ----------------eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce-----------------------
Q 006497 192 ----------------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE----------------------- 232 (643)
Q Consensus 192 ----------------~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~----------------------- 232 (643)
..+.+|...|.+++...+|.+|++|+.|.++++|.++++..
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 01125666677777444667888888888888886632110
Q ss_pred -------------eE--------------------EeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee
Q 006497 233 -------------LC--------------------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 233 -------------~~--------------------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
++ ....|+..|+|++++++.++|++|+.|.+.+||++.....+.++.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs 502 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS 502 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee
Confidence 00 112477889999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 280 ~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~ 359 (643)
+|...|.++.|++ .+.+++++|.|++|+||.+.+... ...+.+|...|..+.|-.+++.|++++.||.|++|+++...
T Consensus 503 GH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 503 GHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred CCccceEEEEecc-ccceeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 9999999999999 889999999999999999977665 45556799999999999999999999999999999996532
Q ss_pred CccccccccCCCccccceeeEeeecCCCC
Q 006497 360 DTARDKFNMGQNQGYGEQNAVFAGRMPGN 388 (643)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (643)
-. .....+.++...+.+.....
T Consensus 581 C~-------~tlD~H~DrvWaL~~~~~~~ 602 (775)
T KOG0319|consen 581 CE-------MTLDAHNDRVWALSVSPLLD 602 (775)
T ss_pred hh-------hhhhhccceeEEEeecCccc
Confidence 22 22233445666666555443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=273.37 Aligned_cols=281 Identities=25% Similarity=0.425 Sum_probs=245.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCC
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN---WMVSGDDGGAIKYWQNNMN 146 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~---~L~sg~~dg~V~iwd~~~~ 146 (643)
-|.+.|.+|... +++|++|+.||.++|||.. |+..+.+.+|.+.|.+++|...+. .|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488899999888 7899999999999999965 778999999999999999865433 5999999999999988776
Q ss_pred ceE----EeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-------------------------CeeeeEeecc
Q 006497 147 NVK----ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-------------------------CQEERSLTGH 197 (643)
Q Consensus 147 ~~~----~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~-------------------------~~~~~~~~~~ 197 (643)
+.. ....+|+..|.+++...++..+++++.|..|+||+.++ ...+..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 533 22359999999999999999999999999999999321 1234567789
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe---E
Q 006497 198 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---E 274 (643)
Q Consensus 198 ~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~---~ 274 (643)
...|.++.|++ ...+++++.|.+|+.||+.++..+.++.. ...++|+.+++..++|++|+.|..|++||-|++. .
T Consensus 260 t~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 260 TEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVV 337 (423)
T ss_pred ccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCcee
Confidence 99999999996 77899999999999999999999888874 4569999999999999999999999999998753 3
Q ss_pred EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 275 ~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
..+|.+|...|.++.|+|.+...|++++.|+++++||++..+..+....+|.+.|.++.|+ ++.+|++|+.|.+|+|+.
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFK 416 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEec
Confidence 5788899999999999999999999999999999999999886666666799999999998 566899999999999997
Q ss_pred cC
Q 006497 355 RN 356 (643)
Q Consensus 355 ~~ 356 (643)
-.
T Consensus 417 ~~ 418 (423)
T KOG0313|consen 417 GS 418 (423)
T ss_pred cc
Confidence 53
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=286.71 Aligned_cols=247 Identities=26% Similarity=0.463 Sum_probs=227.6
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
++.+..|.+.|+++.|+.++.++++|+.+|.|++|+..-. .++.++.| ...|++++|++++..++++++||+|+|||.
T Consensus 131 EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 4567889999999999999999999999999999996644 44555554 599999999999999999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
...+....+.+|.-.|.+++|+|....|++++.|+.|++||.++++++.++..|+..|..+.|++++++|++++.|..++
T Consensus 210 ~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 210 RMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred cCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEE
Confidence 98888888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCEEEEE
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~~l~sg 301 (643)
+||+++.+.+.++++|+..|+++.|+| ..++|.+++.||.|..|.+...+.+..+. .|...|++++|+| -+.+|++|
T Consensus 290 v~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tg 368 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATG 368 (464)
T ss_pred EEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeec
Confidence 999999999999999999999999999 66788999999999999998666655554 7999999999999 79999999
Q ss_pred eCCCcEEEEECC
Q 006497 302 SLDGSIFHWLVG 313 (643)
Q Consensus 302 s~dg~I~iwd~~ 313 (643)
+.|.++++|.-.
T Consensus 369 snd~t~rfw~r~ 380 (464)
T KOG0284|consen 369 SNDRTVRFWTRN 380 (464)
T ss_pred CCCcceeeeccC
Confidence 999999999764
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=288.82 Aligned_cols=293 Identities=17% Similarity=0.350 Sum_probs=255.6
Q ss_pred eeecEEEEeecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCC-CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 006497 59 FAAKFVHTSLNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 59 ~~~~~~~~~l~~h~~~I~~i~~sp-dg~~L~tgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg 136 (643)
+..+....++.+|+..|+++.|.+ .+.+|++++.|+.|+||++-. +++++++.+|...|.+++|+.++..+++++.|+
T Consensus 201 ~~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 201 YLPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred eccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 334556678999999999999999 889999999999999999766 889999999999999999999999999999999
Q ss_pred cEEEEECCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEE
Q 006497 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS 215 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~s 215 (643)
.|++||+++++++..+. ....+.|+.|.+|+ +.+++|+.|+.|+.||+++++.+..+..|-+.|..|.|-++++.+++
T Consensus 281 ~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFis 359 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFIS 359 (503)
T ss_pred eeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEee
Confidence 99999999999998874 45678999999999 88999999999999999999999999999999999999999999999
Q ss_pred EECCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe---EEEEeecCC--CCeEEEE
Q 006497 216 GGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---ELESFRGHR--KDVTALA 289 (643)
Q Consensus 216 gs~dg~I~iwD~~~~~~~~~~~-~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~--~~I~~l~ 289 (643)
.++|++++||+.+..-.+..+. .......||..+|+++++++-+.|+.|.||.+...- ..+.|++|. +.-..+.
T Consensus 360 sSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~ 439 (503)
T KOG0282|consen 360 SSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVD 439 (503)
T ss_pred eccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEE
Confidence 9999999999999876554432 233457789999999999999999999999875422 234455665 3467789
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC-CCEEEEEECCCeEEEEe
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd 354 (643)
||| ++.+|++|+.||.+.+||.++.+.. ....+|+..+..+.|+|. ...+|+++.||.|++|+
T Consensus 440 fSp-DG~~l~SGdsdG~v~~wdwkt~kl~-~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 440 FSP-DGRTLCSGDSDGKVNFWDWKTTKLV-SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EcC-CCCeEEeecCCccEEEeechhhhhh-hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999 8999999999999999999766554 445578999999999996 47899999999999996
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=263.81 Aligned_cols=287 Identities=22% Similarity=0.387 Sum_probs=262.1
Q ss_pred EeecCCCCCeEEEEEcC---CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 66 TSLNKNRCSINRVLWTP---TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~sp---dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
.+..+|..+|..++||+ +|-+|++++.|+.-.+-+-+++..+-++.+|.+.|++.+++.+..+-++++.|-+-+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 45679999999999985 888999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eeeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 143 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~-~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
.-++..+..+ .|+.-|.+++|+.|.++|++++.+..++|||++..+ ....+.+|.+.|+.+.|...++.|+++++|++
T Consensus 88 a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~t 166 (334)
T KOG0278|consen 88 AVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKT 166 (334)
T ss_pred hhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCc
Confidence 9999888776 588999999999999999999999999999997654 45678889999999999999999999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
||+||.++++.+.++. ....|+++.++.+|++|.++ ..+.|.+||.++...++.++ ....|.+...+| +..++++|
T Consensus 167 VRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P-~k~~fVaG 242 (334)
T KOG0278|consen 167 VRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYK-MPCNVESASLHP-KKEFFVAG 242 (334)
T ss_pred eEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeecc-CccccccccccC-CCceEEec
Confidence 9999999999999987 56789999999999877665 46789999999999998887 556789999999 67999999
Q ss_pred eCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 302 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 302 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
++|..++.||+.++..+.....+|-++|.|+.|+|||...++|++||+|++|....
T Consensus 243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 99999999999999888887788999999999999999999999999999998854
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=255.09 Aligned_cols=288 Identities=17% Similarity=0.297 Sum_probs=246.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~ 146 (643)
.+.+|..+|+.|.|+.+|.+|++++.|.++.||-..+++.+-++.+|.+.|+|+..+.+.++|++|+.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46899999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECC-------CCeeeeEeeccCCCeEEEEEcCCCCEEE
Q 006497 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFA-------RCQEERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 147 ~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-----dg~I~iwdl~-------~~~~~~~~~~~~~~V~~l~~sp~~~~l~ 214 (643)
+.+..++ ....|..+.|+.++++++.+.+ .+.|.++|++ ..+....+..+++.++.+.|.+-+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9998875 5678999999999998777654 4689999997 3445677777889999999999999999
Q ss_pred EEECCCcEEEEECCCCce-eEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecC
Q 006497 215 SGGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 293 (643)
Q Consensus 215 sgs~dg~I~iwD~~~~~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~ 293 (643)
+|.+||.|.+||+++++. +.+.+.|...|+.+++++|..++++++.|.+-++||.++.+.++++. ...+|++.+++|.
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~ 242 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPL 242 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccc
Confidence 999999999999999854 44557788999999999999999999999999999999999999998 6778999999996
Q ss_pred CCCEEEEEeCCC-cEEEEECCCCc-----------ceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 294 HEEYFVSGSLDG-SIFHWLVGHET-----------PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 294 ~~~~l~sgs~dg-~I~iwd~~~~~-----------~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
.+..++.|+.+- .|.--+.+.++ +.+....+|-++|++++|+|+|+..++|++||.|++.-.+
T Consensus 243 ~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 243 LDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred cceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 555555555442 12111222221 1223456799999999999999999999999999997654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=287.40 Aligned_cols=298 Identities=21% Similarity=0.343 Sum_probs=264.4
Q ss_pred cEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
+.-.-++.+|+..|+++++|.|...+++|+ .+.|+||+..+.++++++.. +.+.+..|.|.++++++|...|.+.+|
T Consensus 363 ~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vf 439 (888)
T KOG0306|consen 363 RTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVF 439 (888)
T ss_pred ccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEE
Confidence 344457889999999999999987666665 56899999999999999874 489999999999999999999999999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-----Ce--ee------eEeeccCCCeEEEEEcC
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-----CQ--EE------RSLTGHGWDVKSVDWHP 208 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~-----~~--~~------~~~~~~~~~V~~l~~sp 208 (643)
|+.+...+..+..|.+.|++++.++|++.+++++.|.+|++||+.- +. .+ +++ .....|.|+.++|
T Consensus 440 dlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Sp 518 (888)
T KOG0306|consen 440 DLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSP 518 (888)
T ss_pred EeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcC
Confidence 9999999999999999999999999999999999999999999732 11 11 122 2456899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEE
Q 006497 209 TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 288 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l 288 (643)
|+++|+++--|++|+||-+++.+...++.+|.-+|.|+.+++|+++|+||+.|..|+||-++-|.+-+.+-+|...|.++
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V 598 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSV 598 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccccc
Q 006497 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 289 ~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~ 365 (643)
.|.| ...++.+++.|+.|+-||-++-..+.. +.+|...|++++.+++|.++++++.|.+|++|...++--...++
T Consensus 599 ~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~lEee 673 (888)
T KOG0306|consen 599 QFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILILEEE 673 (888)
T ss_pred EEcc-cceeEEEecCcceEEeechhhhhhhee-eccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceeeehh
Confidence 9999 889999999999999999876655544 45688999999999999999999999999999886644444433
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=272.04 Aligned_cols=290 Identities=22% Similarity=0.353 Sum_probs=256.7
Q ss_pred cEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc--------cCCCCEEEEEEcCCCCEEEEEe
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--------AHDHAIRSMVWSHNDNWMVSGD 133 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~--------~h~~~V~~l~~s~~~~~L~sg~ 133 (643)
.+.+...-+.+.-+.|..|+|||++|++|+.||.|.|||..+++..+.++ -++.+|.|++|+.|...|++|+
T Consensus 203 ~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 203 QLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred HhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 33444445667789999999999999999999999999999988765543 4678999999999999999999
Q ss_pred CCCcEEEEECCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCE
Q 006497 134 DGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 212 (643)
Q Consensus 134 ~dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~ 212 (643)
.||.|+||.++++.++..+. .|...|+|+.|+.|+..+++++.|.+++|.-++++++++.+++|.+.|+...|.+||..
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ 362 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHH 362 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCe
Confidence 99999999999999998885 89999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCcEEEEECCCCceeEEecc--CCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeec---CCCCeE
Q 006497 213 LVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRG---HRKDVT 286 (643)
Q Consensus 213 l~sgs~dg~I~iwD~~~~~~~~~~~~--~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~---~~~~I~ 286 (643)
+++++.||+|++|+.++.+++.+++. .+..|+++..-| +...+++|...++|.|.++. ++.++++.. ..+...
T Consensus 363 iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi 441 (508)
T KOG0275|consen 363 IISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFI 441 (508)
T ss_pred EEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceE
Confidence 99999999999999999999988864 445678887777 55789999999999999986 788888863 335677
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 287 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 287 ~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
+++.+| .+.++++.++|+.++.|.+.+++... ....|+..|..++-+|..++|++-++||.+++|.
T Consensus 442 ~~~lSp-kGewiYcigED~vlYCF~~~sG~LE~-tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 442 NAILSP-KGEWIYCIGEDGVLYCFSVLSGKLER-TLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEEecC-CCcEEEEEccCcEEEEEEeecCceee-eeecccccccccccCcccchhhhhcccchhhhcC
Confidence 788899 89999999999999999997776544 4456888999999999999999999999999995
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=292.67 Aligned_cols=289 Identities=25% Similarity=0.430 Sum_probs=260.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~ 146 (643)
.++.-+..|..++|+|...+++++-.+|.|++||.+-+.++..+..|++.|+.++|+++..++++|++|-.|+||+..+.
T Consensus 4 kfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred hhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 147 ~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD 226 (643)
+++.++.+|-+.|+.+.|++.--+|+++++|.+|+||+..+.+++..+++|...|.|..|+|...+|++++-|.+|+|||
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCc-----------------------------eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe--EE
Q 006497 227 AKSGR-----------------------------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK--EL 275 (643)
Q Consensus 227 ~~~~~-----------------------------~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~--~~ 275 (643)
+..-+ ....+++|+..|+-++|+|.-.+|++|+.|..|++|.+...+ ++
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 85211 123457899999999999999999999999999999986544 46
Q ss_pred EEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 276 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 276 ~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
.+.++|...|+++-|+| ..++|++.++|++|++||+.+.+.+..+... .+..|.++.+|..+++++|- |+-+.||.+
T Consensus 244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~lNLfAAgH-DsGm~VFkl 320 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPELNLFAAGH-DSGMIVFKL 320 (1202)
T ss_pred hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCcceeeeec-CCceEEEEE
Confidence 77889999999999999 8999999999999999999888777666554 56899999999998777665 666778888
Q ss_pred CCC
Q 006497 356 NRP 358 (643)
Q Consensus 356 ~~~ 358 (643)
+++
T Consensus 321 eRE 323 (1202)
T KOG0292|consen 321 ERE 323 (1202)
T ss_pred ccc
Confidence 653
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=254.19 Aligned_cols=280 Identities=23% Similarity=0.402 Sum_probs=238.4
Q ss_pred EEEEEcCC-CCEEEEEE-------CCCcEEEEeCCCCceEEEEc--cCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC
Q 006497 76 NRVLWTPT-GRRLITGS-------QSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 76 ~~i~~spd-g~~L~tgs-------~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~ 144 (643)
.++.|||- .++||++. .+|++.|.++...+-+.++. .-.+.+..++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46778873 23455443 36889999986444444433 24678999999986 4688899999999999965
Q ss_pred CC-ceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEEECCCc
Q 006497 145 MN-NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSL 221 (643)
Q Consensus 145 ~~-~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sgs~dg~ 221 (643)
.. ..+..++.|+.+|.++.|+... ..+++++.|++|++||....+.+.++.+|...|...+|+| ..+++++++.|++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 43 4667788999999999999754 5578889999999999999999999999999999999999 4679999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEE
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~ 299 (643)
++|||++.......+..|...|.|+.|+. +.+.|++++.|+.|++||+++.+ .+.++.+|.-.|..++|||....+|+
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLa 251 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLA 251 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhh
Confidence 99999997655555888999999999998 67889999999999999999865 47888999999999999998899999
Q ss_pred EEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcC-CCCEEEEEECCCeEEEEec
Q 006497 300 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 300 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~L~sgs~Dg~V~iWd~ 355 (643)
+++.|-+++|||.......++....|.+-|..+.|+. +..++|+++.|+.++||+-
T Consensus 252 SasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 252 SASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 9999999999999888877888888999999999997 4689999999999999973
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=272.08 Aligned_cols=241 Identities=25% Similarity=0.465 Sum_probs=216.4
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
....|.||+++|.|+.|. .+.|++|++|.+|+|||.++++.+.++..|.+.|..+.|+ +.++++++.|.++.|||+
T Consensus 229 c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm 304 (499)
T KOG0281|consen 229 CLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDM 304 (499)
T ss_pred HHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEec
Confidence 446788999999999996 5689999999999999999999999999999999999997 569999999999999998
Q ss_pred CCCc---eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 144 NMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 144 ~~~~---~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
.... +...+.+|...|+.+.| ++++|++++.|.+|++|++.+++.++++.+|...|.|+.+. ++++++|+.|.
T Consensus 305 ~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSDn 380 (499)
T KOG0281|consen 305 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN 380 (499)
T ss_pred cCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCCc
Confidence 7654 34456799999999999 56699999999999999999999999999999999999884 89999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------EEEEeecCCCCeEEEEEe
Q 006497 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK---------ELESFRGHRKDVTALAWH 291 (643)
Q Consensus 221 ~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~---------~~~~~~~~~~~I~~l~~s 291 (643)
+|++||+..|++++.+++|+.-|.||.|. .+.|++|..||+|+|||+..+. ++.++..|.+.|..+.|
T Consensus 381 tIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF- 457 (499)
T KOG0281|consen 381 TIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF- 457 (499)
T ss_pred eEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee-
Confidence 99999999999999999999999999995 6789999999999999997654 34556678899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcc
Q 006497 292 PFHEEYFVSGSLDGSIFHWLVGHETP 317 (643)
Q Consensus 292 p~~~~~l~sgs~dg~I~iwd~~~~~~ 317 (643)
++..|++++.|.+|.|||+.+...
T Consensus 458 --D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 458 --DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred --cceEEEeccCCCeEEEEEcCCCCc
Confidence 568899999999999999976543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=286.57 Aligned_cols=248 Identities=27% Similarity=0.492 Sum_probs=227.5
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeC-CCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNG-QSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~-~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
...+.+|...|++++|++|+++|++++.|++|+|||+ ..+..++++++|...|++++|++++++|++|+.|++|+|||+
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 4455899999999999999999999999999999999 556889999999999999999999999999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eeeEeeccCCC--eEEEEEcCCCCEEEEEECC
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ--EERSLTGHGWD--VKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~--~~~~~~~~~~~--V~~l~~sp~~~~l~sgs~d 219 (643)
++++++..+..|.+.|++++|++++++|++++.|+.|+|||+.++. ++..+..+... +++++|++++++|++++.|
T Consensus 276 ~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 276 RTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred cCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 9999999999999999999999999999999999999999999988 45666666555 9999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCcE---EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC-CCCeEEEEEecCCC
Q 006497 220 SLVKLWDAKSGRELCSFHGHKNMV---LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHPFHE 295 (643)
Q Consensus 220 g~I~iwD~~~~~~~~~~~~~~~~i---~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~I~~l~~sp~~~ 295 (643)
+.|++||++.++.+..+..|...+ .+...+..+.++++++.|+.|++||+.++..+..+.+| ...+..+++++ ..
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~ 434 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TE 434 (456)
T ss_pred CeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-Cc
Confidence 999999999999999998887753 34455678999999999999999999999999999999 88999999999 88
Q ss_pred CEEEEEe--CCCcEEEEECC
Q 006497 296 EYFVSGS--LDGSIFHWLVG 313 (643)
Q Consensus 296 ~~l~sgs--~dg~I~iwd~~ 313 (643)
+++++++ .|+.|++|..+
T Consensus 435 ~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 435 NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeeeecCcCCCceEEEecCC
Confidence 9999888 68899999764
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-30 Score=261.03 Aligned_cols=292 Identities=18% Similarity=0.348 Sum_probs=252.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc--eEEEEccCCCCEEEEEEcCCCCEEEEEeCC--CcEEE
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKY 140 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d--g~V~i 140 (643)
......|...++-..|+|.|.|+|+|...|+|+|||....+ +..+++...+.|..|.|+.|+++|++.++. +..++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~ 131 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHV 131 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEE
Confidence 45667899999999999999999999999999999976533 334466678999999999999999887653 23344
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~-~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d 219 (643)
+-.+++..+-.+.+|...|.+++|-+..- +++++++|++|.+|+-.-.+...++..|...|+|+.|+|||+++++++.|
T Consensus 132 F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD 211 (603)
T KOG0318|consen 132 FLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD 211 (603)
T ss_pred EEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC
Confidence 44456777888899999999999988764 59999999999999987777788888999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEec---cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCC---CeEEEEEecC
Q 006497 220 SLVKLWDAKSGRELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK---DVTALAWHPF 293 (643)
Q Consensus 220 g~I~iwD~~~~~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---~I~~l~~sp~ 293 (643)
|+|.|||=.+++.+..+. +|++.|.+|+|+||+..|++++.|.+++|||+.+.++++++..... ....+.|-
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-- 289 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-- 289 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--
Confidence 999999999999999997 8999999999999999999999999999999999999998874332 33445553
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 294 HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 294 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
...|++.+.+|+|.+++..... ......+|...|+++..++|+++|++|+.||.|.-|+......
T Consensus 290 -kd~lItVSl~G~in~ln~~d~~-~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 290 -KDHLITVSLSGTINYLNPSDPS-VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTS 354 (603)
T ss_pred -CCeEEEEEcCcEEEEecccCCC-hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccc
Confidence 6789999999999999998887 6677778999999999999999999999999999999865433
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-31 Score=245.57 Aligned_cols=279 Identities=17% Similarity=0.327 Sum_probs=250.0
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEE--EccCCCCEEEEEEcCC-CCEEEEEeCCCcEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKY 140 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~i 140 (643)
..+.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+..+. ..+|.+.|..++|.+. .+.|++++.|.+|++
T Consensus 12 ~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 12 KRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred hhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 3367889999999999999999999999999999999887655443 5679999999999874 578999999999999
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
||+..+++........+.| -+.|+|+++++++++.|..|.+.|.++.+.+...+ ....+..++|+.++++++.....|
T Consensus 92 wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG 169 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLG 169 (313)
T ss_pred EEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCc
Confidence 9999999988876655555 47899999999999999999999998876665554 455788999998888888888889
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEE
Q 006497 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 221 ~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
+|.|....+.+.+.+++.|.....||.|+|+|++|++|+.|-.+.+||+...-+++.+..++-+|..|.|+. ++++||+
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS 248 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS 248 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred EeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC
Q 006497 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
+++|..|-|=++.++..+.++. ++++...++|+|...+||-++.|
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~--~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIP--CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCccceEEeEecccCCeEEEee--ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999888876 47889999999999999988765
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=261.25 Aligned_cols=246 Identities=28% Similarity=0.491 Sum_probs=227.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
...+..|...|.++.|++++++|++++.||.|++||+.+++....+..|...|.++.|++++++|++++.|+.|++||+.
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~ 123 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE 123 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC
Confidence 34567888999999999999999999999999999999988888898999999999999998888888889999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
+.+....+..|...|.+++|++++.++++++.|+.|++||+++.+.+..+..+...|.+++|+++++.|++++.|+.|++
T Consensus 124 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i 203 (289)
T cd00200 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203 (289)
T ss_pred CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEE
Confidence 88888888889999999999999888888888999999999988888888888889999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
||+++++.+..+..+...+.+++|++++.++++++.|+.|++||+++++.+..+..|...|.+++|++ ++.+|++++.|
T Consensus 204 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d 282 (289)
T cd00200 204 WDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSAD 282 (289)
T ss_pred EECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCC
Confidence 99999888888878888999999999988888888899999999999999999998999999999998 68999999999
Q ss_pred CcEEEEE
Q 006497 305 GSIFHWL 311 (643)
Q Consensus 305 g~I~iwd 311 (643)
+.|++|+
T Consensus 283 ~~i~iw~ 289 (289)
T cd00200 283 GTIRIWD 289 (289)
T ss_pred CeEEecC
Confidence 9999996
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=252.15 Aligned_cols=295 Identities=21% Similarity=0.364 Sum_probs=252.8
Q ss_pred eecEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------------------CceEEEEccCCCCEEEEE
Q 006497 60 AAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------------------FNFEMILQAHDHAIRSMV 121 (643)
Q Consensus 60 ~~~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~------------------~~~~~~l~~h~~~V~~l~ 121 (643)
..++....+..|+..+++.+|++||.++|+|+.|..|+|.|++. .-.++++..|.+.|+++.
T Consensus 100 ~~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~ 179 (430)
T KOG0640|consen 100 PSEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLD 179 (430)
T ss_pred CcccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCccccee
Confidence 34566677889999999999999999999999999999999762 125677888999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceEEee--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee---c
Q 006497 122 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---G 196 (643)
Q Consensus 122 ~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~--~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~---~ 196 (643)
|+|...+|++++.|++|++||+.....++.+ ......|.+|.|+|.|.+|+++.+..++++||+++.++..... .
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 9999999999999999999998765443332 2345689999999999999999999999999999988765543 5
Q ss_pred cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc-C-CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 006497 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-H-KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 274 (643)
Q Consensus 197 ~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-~-~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 274 (643)
|.+.|+++.+++.+++.++++.||.|+|||--+++++.++.. | ...|.+..|..+++||++.+.|..+++|.+.+++.
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 788999999999999999999999999999999999988853 4 35699999999999999999999999999999999
Q ss_pred EEEeecCC-----CCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCC
Q 006497 275 LESFRGHR-----KDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 348 (643)
Q Consensus 275 ~~~~~~~~-----~~I~~l~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg 348 (643)
+.++.+.. .--+...|+. .+++++.-. ..+.+.-||.++......+..+|.+.+..+.-+|.+..+++|+.|-
T Consensus 340 l~~YtGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 340 LKEYTGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred EEEEecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 99997542 1234455665 555655544 4578999999999888888889999999999999999999999999
Q ss_pred eEEEEec
Q 006497 349 TTKFWCR 355 (643)
Q Consensus 349 ~V~iWd~ 355 (643)
.+++|-.
T Consensus 419 raRFWyr 425 (430)
T KOG0640|consen 419 RARFWYR 425 (430)
T ss_pred eeeeeee
Confidence 9999975
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=267.31 Aligned_cols=285 Identities=21% Similarity=0.377 Sum_probs=254.9
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc--eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
...+..|.+.|..+.|-.+...|++|+.|..|++|+....+ .+.++.+..+.|+++.|..+++++++++.|+.+++|+
T Consensus 168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 35677899999999999998899999999999999987666 6777888889999999999999999999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 143 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
++......++.+|.+.|+++.|......+++++.|.+|++||+.+..+.+++. ....+.+|+.+ ...++++..|++|
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~Dkkv 324 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKV 324 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccce
Confidence 99999999999999999999999887779999999999999999887777665 34456667665 5678999999999
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC----CCCeEEEEEecCCCCEE
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----RKDVTALAWHPFHEEYF 298 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~----~~~I~~l~~sp~~~~~l 298 (643)
++||+++..++.....+. .|+++..+.++..|++++.|.++.+.|+++.+....+... ....+.+.||| ++.|+
T Consensus 325 RfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSp-d~~Yv 402 (459)
T KOG0288|consen 325 RFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSP-DGSYV 402 (459)
T ss_pred EEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECC-CCcee
Confidence 999999999998887655 8999999999999999999999999999999988887642 24589999999 89999
Q ss_pred EEEeCCCcEEEEECCCCcceEEEecccCc-ceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
++|+.||.|+||++.+++....+...+.. .|++++|++.|..|++++.++.+.+|.
T Consensus 403 aAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 403 AAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999998887777766665 799999999999999999999999994
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=287.37 Aligned_cols=292 Identities=23% Similarity=0.397 Sum_probs=254.8
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCC------------CceEEEEccCCCCEEEEEEcCCCCEEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGS--QSGEFTLWNGQS------------FNFEMILQAHDHAIRSMVWSHNDNWMVS 131 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs--~dg~I~iwd~~~------------~~~~~~l~~h~~~V~~l~~s~~~~~L~s 131 (643)
..+..+...|.+|+.++|+..++||+ .|+.++||+.+. .+.+.....|.+.|+|+.|++||++||+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAs 86 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLAS 86 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEee
Confidence 34455677899999999999999999 899999997432 2234556789999999999999999999
Q ss_pred EeCCCcEEEEECCC------------------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 132 GDDGGAIKYWQNNM------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 132 g~~dg~V~iwd~~~------------------~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
|++|+.|.||+... .+.+..+.+|...|.+++|++++.+|++++.|++|.|||..+.+.+..
T Consensus 87 GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~v 166 (942)
T KOG0973|consen 87 GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKV 166 (942)
T ss_pred ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeee
Confidence 99999999998652 135667789999999999999999999999999999999999999999
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccC------CCcEEEEEEcCCCCEEEEEE----CCCc
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTAS----KDQI 263 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~------~~~i~~l~~sp~g~~l~s~s----~dg~ 263 (643)
+++|...|..+.|+|-|++|++-++|++|+||++.+....+.+..+ ...+..+.|+|||.+|++.. .-.+
T Consensus 167 l~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 167 LRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred eecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 9999999999999999999999999999999998877666666543 23578999999999999864 2347
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEecC----CCC------------EEEEEeCCCcEEEEECCCCcceEEEecccCc
Q 006497 264 IKLYDIRAMKELESFRGHRKDVTALAWHPF----HEE------------YFVSGSLDGSIFHWLVGHETPQVEIHNVHDN 327 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~----~~~------------~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~ 327 (643)
+.|.+..+++.-..+.+|...+.+++|+|. ... .+|+|+.|++|.||.....+.+..+......
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 999999999999999999999999999982 111 6889999999999999888887777777788
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 328 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 328 ~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.|.+++|++||..|++++.||+|.+..+++
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 999999999999999999999999999865
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=265.83 Aligned_cols=291 Identities=21% Similarity=0.339 Sum_probs=246.6
Q ss_pred cEEEEeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 140 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~i 140 (643)
+-+...|.+|.+.|.|++=+|.. ..+++|+.||.|+|||+.+.++...++.|.+-|..|++.. ..+++++.|.+|+.
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQ 133 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceee
Confidence 33446679999999999999987 7899999999999999999999999999999999999985 67899999999999
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCC-EEEEEECC
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKD 219 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~-~l~sgs~d 219 (643)
|.++.. .+.++ ..+..+..|.-+..++.+++|+. .|.|||......+..+.-..+.|.++.|+|... .|++|..|
T Consensus 134 wk~~~~-p~~ti-lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 134 WKIDGP-PLHTI-LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred eeccCC-cceee-eccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 987764 33333 34566777777777788898875 599999999899999988888999999999664 67777799
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEE
Q 006497 220 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 220 g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l 298 (643)
+.|.|||++++..+.++. ....-+.|+|+|..-.++++++|..++.||++..+ .+..+.+|.+.|.++.|+| -+.-|
T Consensus 210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp-tG~Ef 287 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP-TGQEF 287 (433)
T ss_pred CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC-Ccchh
Confidence 999999999998887765 34456889999988888999999999999999765 4778889999999999999 78999
Q ss_pred EEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
++||.|.+|+||.++...............|.++.|+.|.++|++|++|+.|++|.-+..++
T Consensus 288 vsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 99999999999999776544333333345799999999999999999999999999764333
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-30 Score=281.63 Aligned_cols=277 Identities=26% Similarity=0.396 Sum_probs=252.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEE-EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~ 148 (643)
.|...|.|..|. ..++++++.|.+|++||..++..+.. +.+|.+.|+++++...+++|++|+.|.+++|||..++++
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC 283 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE
Confidence 467789999998 55799999999999999999998888 999999999999988788999999999999999999999
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 149 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 149 ~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~ 228 (643)
...+.+|.+.|.++... ..++++|+.|.+|++||+.++..+..+.+|...|+++.++ +.++++|+.|++|++||++
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~ 359 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR 359 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence 99999999999999874 4578889999999999999999999999999999999997 8899999999999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcE
Q 006497 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307 (643)
Q Consensus 229 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I 307 (643)
++++++++.+|...|.++.+... +++++|+.|+.|++||+++. +++.++..|..-+..+.+ .+++|++++.|++|
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~---~~~~Lvs~~aD~~I 435 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL---RDNFLVSSSADGTI 435 (537)
T ss_pred hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc---ccceeEeccccccE
Confidence 99999999999999999988755 89999999999999999999 999999999999988876 47899999999999
Q ss_pred EEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 308 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
++||..+......+...|...|+.+++. ...+++++.|+++++||+...
T Consensus 436 k~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 436 KLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccC
Confidence 9999988877766665467889988886 567888999999999999653
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.7e-30 Score=239.02 Aligned_cols=245 Identities=23% Similarity=0.439 Sum_probs=216.9
Q ss_pred ceEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC---CceEEee-cCCCCCeEEEEEecCCCEEEEEeCCCc
Q 006497 105 NFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNM---NNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTT 179 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~---~~~~~~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~ 179 (643)
..++.+++|.+.|..++|++- |..||+++.|+.|+||+... -.++..+ ..|+..|++++|+|.+++|++++.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 356788899999999999998 88999999999999999884 2333333 579999999999999999999999999
Q ss_pred EEEEECC--CCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCCCCE
Q 006497 180 VKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQNGNW 254 (643)
Q Consensus 180 I~iwdl~--~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~---~~~~~~~~~~~~i~~l~~sp~g~~ 254 (643)
+.||.-. +.+++.++++|+..|.|++|+.+|++||+++.|..|-||.+..+ +++..++.|...|..+.|+|...+
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 9999865 34678899999999999999999999999999999999999854 466788999999999999999999
Q ss_pred EEEEECCCcEEEEECC---CCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEE
Q 006497 255 VLTASKDQIIKLYDIR---AMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 331 (643)
Q Consensus 255 l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 331 (643)
|++++.|++|++|+-. ...++.++.+|...|.+++|++ .+..|++++.|++|+||... ..+...|...+..
T Consensus 165 L~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~-----~~~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 165 LFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLY-----TDLSGMHSRALYD 238 (312)
T ss_pred eEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC-CCceEEEecCCcceEeeeec-----cCcchhcccceEe
Confidence 9999999999999865 4678999999999999999998 78999999999999999864 2344457889999
Q ss_pred EEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 332 LAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 332 l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+.|. ...|++++.|+.|++|....
T Consensus 239 v~W~--~~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 239 VPWD--NGVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eeec--ccceEeccCCCEEEEEEecC
Confidence 9998 56899999999999998764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=247.38 Aligned_cols=255 Identities=25% Similarity=0.374 Sum_probs=222.7
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 106 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 106 ~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~-~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
.+..+.+|++.|+.+.|+|+|.+||+|+.|..|.+|++. ..+-...+++|.+.|..+.|..|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 345567899999999999999999999999999999954 3345566789999999999999999999999999999999
Q ss_pred CCCCeeeeEeeccCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCc
Q 006497 185 FARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 263 (643)
Q Consensus 185 l~~~~~~~~~~~~~~~V~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 263 (643)
.++++.++.++.|...|++++-+.-|. ++.+++.|++++|||+|+...++++. .+..++++.|..++..+++|+-|+.
T Consensus 119 ~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCc
Confidence 999999999999999999998665554 67788899999999999988888775 4567999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC---cceEEEecccC----cceEEEEEcC
Q 006497 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHD----NTVWDLAWHP 336 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~----~~V~~l~~s~ 336 (643)
|++||++..+.+..+.+|...|+.+..++ ++.++.+-+.|.+|++||++-. ...+.+..+|. .....++|++
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~-~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp 276 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSR-YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP 276 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEecc-CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence 99999999999999999999999999999 8999999999999999999753 33344444432 3456789999
Q ss_pred CCCEEEEEECCCeEEEEecCCCCCcc
Q 006497 337 IGYLLCSGSNDHTTKFWCRNRPGDTA 362 (643)
Q Consensus 337 d~~~L~sgs~Dg~V~iWd~~~~~~~~ 362 (643)
++..+.+|+.|..|++||....+...
T Consensus 277 ~~~~i~ags~dr~vyvwd~~~r~~ly 302 (338)
T KOG0265|consen 277 NGTKITAGSADRFVYVWDTTSRRILY 302 (338)
T ss_pred CCCccccccccceEEEeecccccEEE
Confidence 99999999999999999986544433
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=239.77 Aligned_cols=251 Identities=22% Similarity=0.340 Sum_probs=223.0
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 006497 106 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185 (643)
Q Consensus 106 ~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl 185 (643)
....+..+.++|..+.|+-||+|.++++.|.+|++|+...+.+++++.+|..+|.+++.+.|+..|++|+.|..|.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCc
Q 006497 186 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 263 (643)
Q Consensus 186 ~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~--~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 263 (643)
++++.++.+.+|...|+.+.|+.+...+++|+.|.+|++||.++. +.++.+......|.+|..+ +..|++|+.||+
T Consensus 89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGt 166 (307)
T KOG0316|consen 89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGT 166 (307)
T ss_pred ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCc
Confidence 999999999999999999999999999999999999999999864 6788888888899999986 567999999999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcce--EEEEEcCCCCEE
Q 006497 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV--WDLAWHPIGYLL 341 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~s~d~~~L 341 (643)
++.||+|.+.....+ ...+|++++|++ +++..++++.|++|++.|-++++.+.. ..+|.+.- ...+++.....+
T Consensus 167 vRtydiR~G~l~sDy--~g~pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~s-YkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSDY--FGHPITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKS-YKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred EEEEEeecceeehhh--cCCcceeEEecC-CCCEEEEeeccceeeecccchhHHHHH-hcccccceeeeeeeecccceeE
Confidence 999999999876655 346899999999 899999999999999999887765544 34565543 455677778899
Q ss_pred EEEECCCeEEEEecCCCCCcc
Q 006497 342 CSGSNDHTTKFWCRNRPGDTA 362 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~~~~~~~~ 362 (643)
++|++||.|.+||+.......
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EeccCCceEEEEEeccceeee
Confidence 999999999999996544433
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-29 Score=238.49 Aligned_cols=288 Identities=20% Similarity=0.306 Sum_probs=248.0
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEEC
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYWQN 143 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~--dg~V~iwd~ 143 (643)
+.+....+.|++|.|+.+|.+|++++.|..|+|||..+++.++++..+...|..++|....+.++.++. |.+|+..++
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 344556789999999999999999999999999999999999999999999999999888877777766 889999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
.+++.++.+.+|...|++|+.+|-+..+++++.|++|++||++..++...+..... ..++|+|+|-++|++.....|+
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred ecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEE
Confidence 99999999999999999999999999999999999999999997777666654333 4578999999999998888999
Q ss_pred EEECCCC--ceeEEec---cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCe---EEEEEecCCC
Q 006497 224 LWDAKSG--RELCSFH---GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV---TALAWHPFHE 295 (643)
Q Consensus 224 iwD~~~~--~~~~~~~---~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I---~~l~~sp~~~ 295 (643)
+||+|+- ....++. ......+.|.|++||++|+.++..+.+.+.|.-+|..+.++..+...- ...+|+| ++
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds 244 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DS 244 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CC
Confidence 9999964 2333332 346678999999999999999999999999999999988887665433 5778999 89
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
+++++|+.||+|.+|+++++.....+...+...+.++.|+|.-.+++++ +..+.+|-.+..
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 9999999999999999999888888777688899999999887666655 578999976543
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-30 Score=260.11 Aligned_cols=297 Identities=21% Similarity=0.298 Sum_probs=248.6
Q ss_pred ceeecEEEEeecCCCCCeEEEEEcCCCCE-EEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 006497 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRR-LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 58 ~~~~~~~~~~l~~h~~~I~~i~~spdg~~-L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg 136 (643)
.++.++....+....+.|++++|+|...+ +|+.+ .-.+.||+..+....+.+......|.+++|..||++|++|+..|
T Consensus 12 ~~w~~~~~~~~~ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG 90 (487)
T KOG0310|consen 12 RYWRQETFPPVHKEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESG 90 (487)
T ss_pred hhhhhhcccccccccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcC
Confidence 33444444445555678999999996643 44433 45799999988888887888889999999999999999999999
Q ss_pred cEEEEECCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCC-CEEE
Q 006497 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLV 214 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~-~~l~ 214 (643)
.|+|||.++...+..+..|...|..+.|++++ ..|++|++|+.+++||+.+......+.+|++.|+|.+|++.. ..++
T Consensus 91 ~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivv 170 (487)
T KOG0310|consen 91 HVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVV 170 (487)
T ss_pred cEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEE
Confidence 99999987777888889999999999999866 557788899999999999988777889999999999999864 4899
Q ss_pred EEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEeecCCCCeEEEEEec
Q 006497 215 SGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHP 292 (643)
Q Consensus 215 sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~I~~l~~sp 292 (643)
+|+.||+|++||+++. ..+.++. |...|.++.+-+.|..|++++ ...|+|||+-++ +.+..+..|.+.|+|+++..
T Consensus 171 tGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 171 TGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLAS 248 (487)
T ss_pred ecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeec
Confidence 9999999999999987 5666665 889999999999999999887 457999999855 44555666999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 293 FHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 293 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
++..|++++.|+.|++||+.+.+....... .++|.+++.++|+..++.|-.||.+.+-+.....+
T Consensus 249 -~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~--~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k 313 (487)
T KOG0310|consen 249 -DSTRLLSGSLDRHVKVFDTTNYKVVHSWKY--PGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKK 313 (487)
T ss_pred -CCceEeecccccceEEEEccceEEEEeeec--ccceeeEEecCCCceEEEecccceeeeehhhcccC
Confidence 789999999999999999866655544443 67999999999999999999999998876544333
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=268.98 Aligned_cols=279 Identities=23% Similarity=0.380 Sum_probs=242.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~ 153 (643)
..+-++|+ ..+.||+|. ...|++|+..+++.......+++.|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 179 Y~nlldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 179 YLNLLDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hhhHhhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 34557788 345677766 4579999999998777777678999999999999999999999999999999998888888
Q ss_pred C-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE-eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 006497 154 A-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 154 ~-~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~-~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 231 (643)
. |...|.+++|. ...+.+|+.|+.|.++|++..+.... +.+|...|..+.|++|++++|+|+.|+.|.|||....+
T Consensus 257 ~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~ 334 (484)
T KOG0305|consen 257 GSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE 334 (484)
T ss_pred CCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc
Confidence 8 99999999997 66899999999999999987766555 78899999999999999999999999999999998888
Q ss_pred eeEEeccCCCcEEEEEEcC-CCCEEEEEE--CCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE-eCCCcE
Q 006497 232 ELCSFHGHKNMVLCVKWNQ-NGNWVLTAS--KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG-SLDGSI 307 (643)
Q Consensus 232 ~~~~~~~~~~~i~~l~~sp-~g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg-s~dg~I 307 (643)
.+..+..|...|..++|+| ...+||+|+ .|++|++||..+++.+..+. ....|+.|.|++...+++.+. ..++.|
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i 413 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQI 413 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcE
Confidence 9999999999999999999 667888865 79999999999999988876 667899999999554555543 356789
Q ss_pred EEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 308 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
.||++.+.+ ......+|...|..++++||+..|++|+.|.++++|++-..
T Consensus 414 ~lw~~ps~~-~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 414 TLWKYPSMK-LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEeccccc-eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 999997744 44555679999999999999999999999999999998553
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=277.60 Aligned_cols=299 Identities=17% Similarity=0.266 Sum_probs=226.5
Q ss_pred CCCceeecEEEEeec-CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEE------------
Q 006497 55 PSTSFAAKFVHTSLN-KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMV------------ 121 (643)
Q Consensus 55 ~~~~~~~~~~~~~l~-~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~------------ 121 (643)
..+-+...++...+. .|++.|.++.||+||+|||+|+.|+.|+||.+...+.... +...-.++.
T Consensus 249 ~~kelsal~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~~~s~~~p~ 325 (712)
T KOG0283|consen 249 SPKELSALTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYNANSQIEPS 325 (712)
T ss_pred CcccceeeEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcc---cccccchhhhhhhhccccCcc
Confidence 334455566667777 9999999999999999999999999999998765332111 111111111
Q ss_pred -EcC---CCC--EEEEEeCCCcEEEEECC----CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeee
Q 006497 122 -WSH---NDN--WMVSGDDGGAIKYWQNN----MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191 (643)
Q Consensus 122 -~s~---~~~--~L~sg~~dg~V~iwd~~----~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~ 191 (643)
-+. .++ ..-.+.....+ +.+.. ..+.+..+.+|.+.|.+|.|+.+ ++|++++.|.+|++|++...+++
T Consensus 326 ~s~~~~~~~~~s~~~~~~~s~~~-~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL 403 (712)
T KOG0283|consen 326 TSSEEKISSRTSSSRKGSQSPCV-LLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECL 403 (712)
T ss_pred ccccccccccccccccccCCccc-cCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCccee
Confidence 111 001 11112222222 22211 23455667899999999999966 47999999999999999999999
Q ss_pred eEeeccCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 192 RSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 270 (643)
..|. |.+.|+||+|+| |+++|++|+-|++|+||++...+.+. +.....-|++++|.|||++.++|+.+|.+++|+++
T Consensus 404 ~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~ 481 (712)
T KOG0283|consen 404 KVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTE 481 (712)
T ss_pred eEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEcc
Confidence 9887 999999999999 67899999999999999999766554 44455789999999999999999999999999999
Q ss_pred CCeEEEEeec--C------CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCc-ceEEEEEcCCCCEE
Q 006497 271 AMKELESFRG--H------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYLL 341 (643)
Q Consensus 271 ~~~~~~~~~~--~------~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~d~~~L 341 (643)
..+....+.. + ...|+.+.|.+.+.+.+++.+.|..|+|||.++...+..+...+.. .-....|+.||++|
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI 561 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence 8777655431 1 2379999999866677888889999999999877776666654433 23567889999999
Q ss_pred EEEECCCeEEEEecCCCCC
Q 006497 342 CSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~~~~~~ 360 (643)
+++++|..|+||+++....
T Consensus 562 Vs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 562 VSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred EEeecCceEEEEeCCCCcc
Confidence 9999999999999865443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=265.30 Aligned_cols=250 Identities=22% Similarity=0.390 Sum_probs=231.5
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 006497 107 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186 (643)
Q Consensus 107 ~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~ 186 (643)
.+.+..+...|.++.|+|...+++++-.+|.|.|||.++...++.+.....+|++..|....+.+++|++|..|+||+.+
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34556689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-CceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcE
Q 006497 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQII 264 (643)
Q Consensus 187 ~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~-~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I 264 (643)
+.+.+..+..|.+.|+||+.+|..-+++++++|-+|++||.+. ..+..++++|...|.+|+|+| |.+.+++++.|++|
T Consensus 86 t~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 86 TGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred cceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 9999999999999999999999999999999999999999985 467889999999999999999 77899999999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEecCC-CCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEE
Q 006497 265 KLYDIRAMKELESFRGHRKDVTALAWHPFH-EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 265 ~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~s 343 (643)
+||.+.+.....++++|...|+|+.+-+.+ ..+|++|++|.+|+|||..+..+ +..+.+|...|..++|++.-.+|++
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-HHHhhcccccceEEEecCCCcEEEE
Confidence 999999999999999999999999998732 34999999999999999976654 4556689999999999999999999
Q ss_pred EECCCeEEEEecCC
Q 006497 344 GSNDHTTKFWCRNR 357 (643)
Q Consensus 344 gs~Dg~V~iWd~~~ 357 (643)
|++||+|+||.-.+
T Consensus 245 gsEDGTvriWhs~T 258 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKT 258 (794)
T ss_pred ecCCccEEEecCcc
Confidence 99999999998754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=256.67 Aligned_cols=250 Identities=18% Similarity=0.364 Sum_probs=218.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEcc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
+.+++.+|...|.-|.||||.++|++++.|..+.+||+.+++....+.. +...+.+++|.||+..+++|+.|+.|..||
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 4578899999999999999999999999999999999999988777653 468899999999999999999999999999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 143 NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
++.+....-.......|.++++..||+++++.+.|..|++++.++......+. ....|++++++.|++++++--.+..|
T Consensus 341 lDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei 419 (519)
T KOG0293|consen 341 LDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEI 419 (519)
T ss_pred CCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCee
Confidence 98665433322334679999999999999999999999999998765554444 55689999999999999999999999
Q ss_pred EEEECCCCceeEEeccCCCc--EEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEE
Q 006497 223 KLWDAKSGRELCSFHGHKNM--VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~~~~~--i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~ 299 (643)
++||++..+.+.++.+|+.. |..-||-- +..++++|++|+.|+||+.++++.+.++.+|...|+|++|+|.+...+|
T Consensus 420 ~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~A 499 (519)
T KOG0293|consen 420 HLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFA 499 (519)
T ss_pred EEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhh
Confidence 99999998889998888654 44445544 5689999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEEECCC
Q 006497 300 SGSLDGSIFHWLVGH 314 (643)
Q Consensus 300 sgs~dg~I~iwd~~~ 314 (643)
++++||+|+||....
T Consensus 500 SasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 500 SASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCeEEEecCCc
Confidence 999999999998754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=245.99 Aligned_cols=247 Identities=19% Similarity=0.281 Sum_probs=216.1
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
..-.+.+|+++|+|+.|+.||.+||||+.+|.|+||+..++.....+...-+.|.-+.|+|.+.+|+.|+.||.|.+|.+
T Consensus 98 ~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 34578899999999999999999999999999999999999988888767788889999999999999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec---------------------------
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--------------------------- 196 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~--------------------------- 196 (643)
.+....+.+.+|...+++=.|.++|++++++..||+|++||+.+++.+..+..
T Consensus 178 p~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 178 PSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred CCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE
Confidence 99888888999999999999999999999999999999999988776654430
Q ss_pred ------------------------cCCC---eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEc
Q 006497 197 ------------------------HGWD---VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 249 (643)
Q Consensus 197 ------------------------~~~~---V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~s 249 (643)
++.. |.++.|+.+=.+.|+|+.||+|.|||+...+....+. |...|+.+.|.
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~ 336 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWL 336 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEc
Confidence 0111 1122222233577889999999999999776555554 88889999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 250 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
+ ..+|++++.+|.|++||.|+++++.++.+|...|.++++++ +.+++++++.|++.+||++.
T Consensus 337 ~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 337 N-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred C-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence 8 68999999999999999999999999999999999999999 89999999999999999863
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-28 Score=221.80 Aligned_cols=288 Identities=21% Similarity=0.365 Sum_probs=241.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC------C---------ceEEEEccCCCCEEEEEEcCCCCEEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS------F---------NFEMILQAHDHAIRSMVWSHNDNWMVS 131 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~------~---------~~~~~l~~h~~~V~~l~~s~~~~~L~s 131 (643)
.+......|++++|+|.|.+.++|+...+++|..... . ...+.-+.|.+.|+|.+|+++|++|++
T Consensus 27 ~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 27 NILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred EEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 3445567899999999999999999999998874221 1 123445678999999999999999999
Q ss_pred EeCCCcEEEEECCCCce-----EEeecCCCCCeEEEEEecC----CCEEEEEe-CCCcEEEEECCCCeeeeEeeccCCCe
Q 006497 132 GDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRT----DLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDV 201 (643)
Q Consensus 132 g~~dg~V~iwd~~~~~~-----~~~~~~~~~~I~~l~~s~d----~~~l~s~s-~dg~I~iwdl~~~~~~~~~~~~~~~V 201 (643)
|++|.+|++..++...+ ...+.-|.+.|.+++|..+ +..|++++ .|..|++-|..+++....+.+|.+-|
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi 186 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI 186 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE
Confidence 99999999987654332 2345679999999999764 34566654 47889999999999999999999998
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc-------CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 006497 202 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 274 (643)
Q Consensus 202 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 274 (643)
.++- +-++-.+++|+.|.+|++||++-..++.++.. ..+.|.+++..|.|++|++|..|....+||++.++.
T Consensus 187 laly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~ 265 (350)
T KOG0641|consen 187 LALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM 265 (350)
T ss_pred EEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence 8763 33578999999999999999998888877642 235699999999999999999999999999999999
Q ss_pred EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC---cceEEEecccCcceEEEEEcCCCCEEEEEECCCeEE
Q 006497 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE---TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTK 351 (643)
Q Consensus 275 ~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~ 351 (643)
+..|..|...|.|+.|+| +..++++++.|..|++-|+... .....+...|++.+..+.|++..-.+++.+.|.++.
T Consensus 266 iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~t 344 (350)
T KOG0641|consen 266 IQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTAT 344 (350)
T ss_pred eeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEE
Confidence 999999999999999999 8999999999999999998543 233445567899999999999999999999999999
Q ss_pred EEecC
Q 006497 352 FWCRN 356 (643)
Q Consensus 352 iWd~~ 356 (643)
+|.++
T Consensus 345 lwa~~ 349 (350)
T KOG0641|consen 345 LWALN 349 (350)
T ss_pred EeccC
Confidence 99864
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-30 Score=243.49 Aligned_cols=295 Identities=19% Similarity=0.278 Sum_probs=254.9
Q ss_pred cEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
..+.+.+.+|++.|..++.......+.+++.|.+.+||.+++++++..+.+|.+.|++|+|++.+.++++++.|++..||
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIW 217 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHH
Confidence 34567889999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred EC------CC------------------------------C----ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEE
Q 006497 142 QN------NM------------------------------N----NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 181 (643)
Q Consensus 142 d~------~~------------------------------~----~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~ 181 (643)
.. -. + -.+..+.+|...|.+..|...++.++++++|.+..
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN 297 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence 61 00 0 01234567888999999999999999999999999
Q ss_pred EEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEEC
Q 006497 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 182 iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 260 (643)
+||+++++.+..+.+|....+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+. .+++++.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCC
Confidence 9999999999999999999999999999999999999999999999843 4567889999999999998764 5899999
Q ss_pred CCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc---eEEEecccCcceEEEEEcC
Q 006497 261 DQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 261 dg~I~iwd~~~~~~-~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~ 336 (643)
|.+|+|||+++.+. +.+++ ....++.++++. +..+|+.--.+..|++||++.... ......+|...|+|++|..
T Consensus 377 DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred CceEEEeeeccccCcceeee-cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccc
Confidence 99999999998765 55555 677899999997 777888888889999999965432 2224467888999999987
Q ss_pred CC--CEEEEEECCCeEEEEecCCCC
Q 006497 337 IG--YLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 337 d~--~~L~sgs~Dg~V~iWd~~~~~ 359 (643)
+- .-|++++-|..+.-|+++.+.
T Consensus 455 ehp~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cCcccccccccccceeeeeEecccC
Confidence 63 558899999999999997643
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=261.59 Aligned_cols=279 Identities=20% Similarity=0.332 Sum_probs=245.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
+..|+|++-++|.-+||+|..||.|+||+..+......+.+|..+|+++.|...|.+|++|+.|+.|.+||+-...-...
T Consensus 65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 46899999999999999999999999999999989999999999999999999999999999999999999998888889
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC--
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-- 229 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~-- 229 (643)
+.+|++.|+...|..+.+.|++++.|+.|++||+++..+..+...|...|..++++. +.+++++.|+.+++|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~ 222 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFED 222 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeeccc
Confidence 999999999999999889999999999999999999999999999999999999985 7899999999999999810
Q ss_pred ----------------------Cce-------------------------------------------------------
Q 006497 230 ----------------------GRE------------------------------------------------------- 232 (643)
Q Consensus 230 ----------------------~~~------------------------------------------------------- 232 (643)
++.
T Consensus 223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~ 302 (888)
T KOG0306|consen 223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD 302 (888)
T ss_pred ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence 000
Q ss_pred --------------------------------e-------------------------------EEeccCCCcEEEEEEc
Q 006497 233 --------------------------------L-------------------------------CSFHGHKNMVLCVKWN 249 (643)
Q Consensus 233 --------------------------------~-------------------------------~~~~~~~~~i~~l~~s 249 (643)
. ..+.+|...|.+++++
T Consensus 303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS 382 (888)
T KOG0306|consen 303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVS 382 (888)
T ss_pred hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEee
Confidence 0 0111455668888998
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcce
Q 006497 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 329 (643)
Q Consensus 250 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 329 (643)
.+...+++++ .+.|+||+..+.++++++... .+.+..|.| +++++++|...|.+.+||+.....+. ...+|++.|
T Consensus 383 ~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~E-ti~AHdgaI 457 (888)
T KOG0306|consen 383 SDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVE-TIRAHDGAI 457 (888)
T ss_pred cCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhh-hhhccccce
Confidence 7766666654 668999999999999999754 889999999 89999999999999999997665544 444899999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 330 WDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 330 ~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
|+++.++|++.+++++.|.+|++||...
T Consensus 458 Wsi~~~pD~~g~vT~saDktVkfWdf~l 485 (888)
T KOG0306|consen 458 WSISLSPDNKGFVTGSADKTVKFWDFKL 485 (888)
T ss_pred eeeeecCCCCceEEecCCcEEEEEeEEE
Confidence 9999999999999999999999999754
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-28 Score=285.37 Aligned_cols=262 Identities=19% Similarity=0.300 Sum_probs=222.6
Q ss_pred CCcEEEEeCCCCceEEEE-----ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--------eEEeecCCCCCe
Q 006497 93 SGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESV 159 (643)
Q Consensus 93 dg~I~iwd~~~~~~~~~l-----~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~--------~~~~~~~~~~~I 159 (643)
+|.+++|+..+.+....+ ..|.+.|++++|++++++||+|+.|+.|+|||++... ....+ .+...|
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCce
Confidence 677888988776654443 3488999999999999999999999999999975421 11122 235678
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCceeEEec
Q 006497 160 RDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFH 237 (643)
Q Consensus 160 ~~l~~s~d-~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~ 237 (643)
.+++|++. +.+|++++.|++|+|||+.+.+.+..+..|...|++++|++ ++.+|++++.|++|++||+++++.+..+.
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 99999874 67899999999999999999999999999999999999996 78899999999999999999998888887
Q ss_pred cCCCcEEEEEEc-CCCCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 006497 238 GHKNMVLCVKWN-QNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 238 ~~~~~i~~l~~s-p~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
.+ ..|.++.|+ +++.+|++|+.|+.|++||+++.+ .+..+.+|...|+++.|. ++.+|++++.|++|++||++..
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCC
Confidence 44 679999995 578999999999999999998866 467788899999999997 5789999999999999999743
Q ss_pred -----cceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 316 -----TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 316 -----~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
......+.+|...+++++|++++.+|++|+.|+.|++|+....
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 2334556678999999999999999999999999999997644
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=247.84 Aligned_cols=283 Identities=21% Similarity=0.354 Sum_probs=250.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
.-.|+++...+....++||+.|..+.++|..+.+.+..+++|...|+.+.|+++...+++++.|..|+||..........
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~ 298 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS 298 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence 34688999988878899999999999999999999999999999999999999999999999999999999888887888
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc--CCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH--GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~--~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 229 (643)
...|...|+.+..++.+.||+++++|++..+.|++++..+...... .-.+++.+|+|||.+|.+|..|+.|+|||+++
T Consensus 299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks 378 (506)
T KOG0289|consen 299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS 378 (506)
T ss_pred cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence 8899999999999999999999999999999999999887776642 34589999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCC-CCeEEEEEecCCCCEEEEEeCCCcEE
Q 006497 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIF 308 (643)
Q Consensus 230 ~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~~l~sgs~dg~I~ 308 (643)
...+..|.+|.+.|..|+|+.+|.||+++++|+.|++||+|..+...++...+ ..|.++.|.. .+.+|+.++.|=+|+
T Consensus 379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy 457 (506)
T KOG0289|consen 379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQVY 457 (506)
T ss_pred ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeEEE
Confidence 99999999999999999999999999999999999999999998888887443 4799999998 788888887776666
Q ss_pred EEECCCC-cceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 309 HWLVGHE-TPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 309 iwd~~~~-~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
+++-.+. .........|.+..+++.|..+..+|++++.|..++++.+
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 6663222 2233344457778899999999999999999999998865
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-28 Score=263.04 Aligned_cols=280 Identities=16% Similarity=0.222 Sum_probs=215.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceE-------------EEEccCCCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE-------------MILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIK 139 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~-------------~~l~~h~~~V~~l~~s~-~~~~L~sg~~dg~V~ 139 (643)
.|+....+.|+..+++++.+.....|+...+..+ ..+.+|.+.|++++|++ ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 4555555566555666666666666654332211 24678999999999999 788999999999999
Q ss_pred EEECCCCc-------eEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCC
Q 006497 140 YWQNNMNN-------VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 211 (643)
Q Consensus 140 iwd~~~~~-------~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~ 211 (643)
|||+.+.. .+..+.+|...|.+++|++++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 99987642 456678999999999999975 6899999999999999999988889999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeccCCCc-EEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE-EEEeecCC-CC
Q 006497 212 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LESFRGHR-KD 284 (643)
Q Consensus 212 ~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~-i~~l~~sp~g~~l~s~s----~dg~I~iwd~~~~~~-~~~~~~~~-~~ 284 (643)
+|++++.|++|+|||+++++.+..+..|... +..+.|.+++..|++++ .|+.|+|||+++... +..+..+. ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999999999999999999999888888754 45678888888777654 478999999987653 33333333 34
Q ss_pred eEEEEEecCCCCEEEEEe-CCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 285 VTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 285 I~~l~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
+....|++ ++++|++++ .|+.|++||+.+..........+...+..++|.+... +-...--..++|++.
T Consensus 262 ~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 262 LFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYALT 331 (493)
T ss_pred eEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEec
Confidence 55667787 677777776 5999999999887765555444566788889887532 222223345777764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-29 Score=249.27 Aligned_cols=290 Identities=21% Similarity=0.341 Sum_probs=246.5
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceE----EE-------------E-ccCCCCEEEEEEcCCC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MI-------------L-QAHDHAIRSMVWSHND 126 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~----~~-------------l-~~h~~~V~~l~~s~~~ 126 (643)
...+..|.-+|.||++++|++++++++.+++|.-|++.+++.. .. - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3667889999999999999999999999999999998776632 11 1 2678889999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEE
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 206 (643)
Q Consensus 127 ~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~ 206 (643)
+|||+|+.|..|.||+.++.+.+..+.+|.+.|.+++|-.....|++++.|.+|++|+++....+.++.+|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec------
Q 006497 207 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG------ 280 (643)
Q Consensus 207 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~------ 280 (643)
...++.+.+|+.|+++++|++.. +....+.++.+.+.|++|-.+ ..+++|+.||.|.+|++.+.+.+.+...
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred hcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccC
Confidence 88888888888999999999954 444567788889999999854 6799999999999999999888776642
Q ss_pred ------CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEec--ccCcceEEEEEcCCCCEEEE-EECCCeEE
Q 006497 281 ------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCS-GSNDHTTK 351 (643)
Q Consensus 281 ------~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~d~~~L~s-gs~Dg~V~ 351 (643)
+...|++++..+ +.+++++|+.+|.|++|.+..+...+.++. .-.+.|++|+|+.+|+.|++ .+....+-
T Consensus 373 ~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred CccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccc
Confidence 112799999999 899999999999999999987743333221 14678999999999985554 56666666
Q ss_pred EEecCC
Q 006497 352 FWCRNR 357 (643)
Q Consensus 352 iWd~~~ 357 (643)
-|-...
T Consensus 452 RW~~~k 457 (479)
T KOG0299|consen 452 RWWCLK 457 (479)
T ss_pred eeeEee
Confidence 666543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=253.10 Aligned_cols=288 Identities=20% Similarity=0.367 Sum_probs=230.4
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc----eEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAI 138 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~----~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~dg~V 138 (643)
....+.+|+..|+++++.+.|.+|++|+.|..|++||+.... ..+.+. .....|+++.|++.++.|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 456788999999999999999999999999999999977533 222222 345679999999999999999988999
Q ss_pred EEEECCCCceEEe------------ecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeee-eEee-----ccCC
Q 006497 139 KYWQNNMNNVKAN------------KSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE-RSLT-----GHGW 199 (643)
Q Consensus 139 ~iwd~~~~~~~~~------------~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~-~~~~-----~~~~ 199 (643)
+|+|-+..+.... .++|...++|.+|+|+. ..|++++.||+++|||+++.+.. ..++ +..-
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 9999765544332 25788999999999976 56899999999999999765432 2222 2234
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCCCce---eEEeccCCC--cEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 006497 200 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 274 (643)
Q Consensus 200 ~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~---~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 274 (643)
.++.++|++|+++||+|+.||.|.+||..+... .+.-+.|.. .|+||+|+.||++|++-+.|+++++||++..+.
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 688999999999999999999999999865421 223345666 899999999999999999999999999998654
Q ss_pred -EEEeec--CCCCeEEEEEecCCCCEEEEEeC------CCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEE
Q 006497 275 -LESFRG--HRKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 345 (643)
Q Consensus 275 -~~~~~~--~~~~I~~l~~sp~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs 345 (643)
+....+ ....-+.++||| +.++|++|+. .|.+++||..+.....++... ...|..+.|++.-+.|++++
T Consensus 399 pL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gs 476 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGS 476 (641)
T ss_pred chhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeec
Confidence 444443 234568899999 8899998864 478999998777766666543 66789999999988899999
Q ss_pred CCCeEEEE
Q 006497 346 NDHTTKFW 353 (643)
Q Consensus 346 ~Dg~V~iW 353 (643)
.||+++||
T Consensus 477 gdG~~~vy 484 (641)
T KOG0772|consen 477 GDGTAHVY 484 (641)
T ss_pred CCCceEEE
Confidence 99999986
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=260.25 Aligned_cols=247 Identities=25% Similarity=0.443 Sum_probs=222.4
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
...+..|.++|+.|+|++++.++++|+.|-.|+||+.++.+++.++.+|.+.|+.+.|++.--+|+++++|-+|+||+..
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-----------------------------eeeEee
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-----------------------------EERSLT 195 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~-----------------------------~~~~~~ 195 (643)
+.+++..+.+|...|.|..|+|....+++++.|.+|+|||+...+ ....+.
T Consensus 124 sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 124 SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeec
Confidence 999999999999999999999999999999999999999984211 124567
Q ss_pred ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 006497 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273 (643)
Q Consensus 196 ~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 273 (643)
+|...|+-++|+|.-.+|++|++|..|++|.....+. +-+..+|.+.|.|+-|++..++|++.++|+.|+|||+...+
T Consensus 204 GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt 283 (1202)
T KOG0292|consen 204 GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT 283 (1202)
T ss_pred ccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc
Confidence 8999999999999999999999999999999876543 44567899999999999999999999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 274 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 274 ~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
.+.+|+......+.++.+| ..+++++|-+ +-+.+|.++
T Consensus 284 ~v~tfrrendRFW~laahP-~lNLfAAgHD-sGm~VFkle 321 (1202)
T KOG0292|consen 284 SVQTFRRENDRFWILAAHP-ELNLFAAGHD-SGMIVFKLE 321 (1202)
T ss_pred ceeeeeccCCeEEEEEecC-CcceeeeecC-CceEEEEEc
Confidence 9999998889999999999 7787777654 444455554
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=256.59 Aligned_cols=248 Identities=16% Similarity=0.346 Sum_probs=221.5
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEE
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYW 141 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iw 141 (643)
-+.+++.+|+..|.+++|+.+|..+++++.|+.|++||+++|+++..+. ....++|+.|.+++ +.+++|+.|+.|+.|
T Consensus 249 ~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 249 RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 3457889999999999999999999999999999999999999988886 46678999999998 899999999999999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec-cCCCeEEEEEcCCCCEEEEEECCC
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
|+++++++..+..|-+.|.++.|.+++++++++++|++++||+.+....+..+.. +....-||..+|+++++++-+.|+
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCc
Confidence 9999999999999999999999999999999999999999999987766554332 334567899999999999999999
Q ss_pred cEEEEECCCC---ceeEEeccCC--CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCC
Q 006497 221 LVKLWDAKSG---RELCSFHGHK--NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 295 (643)
Q Consensus 221 ~I~iwD~~~~---~~~~~~~~~~--~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 295 (643)
.|.||.+... .....+++|. +.-..+.|||||.+|++|+.||.+.+||.++.+.+..++.|...+..+.|+|...
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence 9999987643 2233455654 3467789999999999999999999999999999999999999999999999888
Q ss_pred CEEEEEeCCCcEEEEE
Q 006497 296 EYFVSGSLDGSIFHWL 311 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd 311 (643)
..+|+++.||.|++||
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 9999999999999996
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=256.66 Aligned_cols=283 Identities=22% Similarity=0.342 Sum_probs=241.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceE--EEEccCCCCEEE-EEEcC-CCCEEEEEeCCCcEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MILQAHDHAIRS-MVWSH-NDNWMVSGDDGGAIK 139 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~--~~l~~h~~~V~~-l~~s~-~~~~L~sg~~dg~V~ 139 (643)
+...+.+|+..|..+++..+. .+++++.||++++|+-...+.+ ..+.+|.+.|.+ +++.+ ++.+|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 557889999999999987654 7999999999999997655443 346678888877 88875 445699999999999
Q ss_pred EEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC
Q 006497 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d 219 (643)
+|.....+...++++|+..|.+++...++. ++++++|.+++||-+.. +...+.+|...|.+++.-+++ .+++|+.|
T Consensus 85 v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 85 VFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVTGSAD 160 (745)
T ss_pred EEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEeccCc
Confidence 999999999999999999999999887776 99999999999998754 556699999999999999887 89999999
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEE
Q 006497 220 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 220 g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~ 299 (643)
.+|++|.- ++.+++|.+|.+.|+.+++-+++ .|++|+.||.|++||+ +++++.++.+|..-|.+++... ++.+++
T Consensus 161 KtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~-~~~~Iv 235 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMAL-SDGLIV 235 (745)
T ss_pred ceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecC-CCCeEE
Confidence 99999975 67899999999999999998764 5889999999999999 7999999999999999999776 789999
Q ss_pred EEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 300 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 300 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
++++|++++||+.+ .+..........||++.+-.+|. |++|+.||.||||..+....
T Consensus 236 s~gEDrtlriW~~~---e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 236 STGEDRTLRIWKKD---ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EecCCceEEEeecC---ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 99999999999986 22233322344799998887776 67788899999999875444
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=265.26 Aligned_cols=263 Identities=25% Similarity=0.371 Sum_probs=234.7
Q ss_pred cEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
+++...+.+|.+.|.+++|...+.+|++|+.|.+++|||..++++..++.+|.+.|.++... ..++++|+.|.+|++|
T Consensus 239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW 316 (537)
T KOG0274|consen 239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVW 316 (537)
T ss_pred eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceEEEE
Confidence 45556699999999999999888899999999999999999999999999999999998864 5678889999999999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
+++++..+..+.+|.+.|.++.++ +.++++++.|++|+|||+.+.++++++.+|...|.++.+... +.+++|+.|++
T Consensus 317 ~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~ 393 (537)
T KOG0274|consen 317 DVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT 393 (537)
T ss_pred eccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc
Confidence 999999999998899999999996 779999999999999999999999999999999999988755 89999999999
Q ss_pred EEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec-CCCCeEEEEEecCCCCEEE
Q 006497 222 VKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 222 I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~I~~l~~sp~~~~~l~ 299 (643)
|++||+++. +++.++.+|..-+.++.+ .+++|++++.|++|++||..++++++.+.+ +...|+++++. ...++
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il 468 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEIL 468 (537)
T ss_pred eEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEE
Confidence 999999999 999999999998877665 478999999999999999999999999998 67889988874 57888
Q ss_pred EEeCCCcEEEEECCCCcceEEEecccCcceEEEEE
Q 006497 300 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 334 (643)
Q Consensus 300 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 334 (643)
+++.|+++++||+++......+..........+++
T Consensus 469 ~s~~~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 469 CSSDDGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred EEecCCeeEEEecccCchhhhhhhccccccccccc
Confidence 99999999999999887766654333334444444
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=261.24 Aligned_cols=284 Identities=24% Similarity=0.411 Sum_probs=243.7
Q ss_pred CCCCeE---EEEEc-CCCCEEEEEECCCcEEEEeCCCCc------eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006497 71 NRCSIN---RVLWT-PTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 140 (643)
Q Consensus 71 h~~~I~---~i~~s-pdg~~L~tgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~i 140 (643)
|...|. .+..+ +.+++|++|+.||.|++|+..... ....++.|.+.|+.++...+++.|++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 34444 356789999999999999865432 36678889999999999999999999999999999
Q ss_pred EECCCC--ceEEeecCCCCCeEEEEE-ecCCCEEEEEeCCCcEEEEECCCCee--ee--------Eee-ccCCCeEEEEE
Q 006497 141 WQNNMN--NVKANKSAHKESVRDLSF-CRTDLKFCSCSDDTTVKVWDFARCQE--ER--------SLT-GHGWDVKSVDW 206 (643)
Q Consensus 141 wd~~~~--~~~~~~~~~~~~I~~l~~-s~d~~~l~s~s~dg~I~iwdl~~~~~--~~--------~~~-~~~~~V~~l~~ 206 (643)
|+.... -+..++..|.+.|.||++ .++...+|+|+.|+.|.+||++++.. +. .+. ++...|.+++-
T Consensus 100 W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred eecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 998877 567778899999999999 77888999999999999999987622 21 222 67788999999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeE
Q 006497 207 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 286 (643)
Q Consensus 207 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~ 286 (643)
++.+..|++|+.++.|++||.++++.+..+.+|...|.++..+.||+.+++++.||+|++||+...+++.++..|...|+
T Consensus 180 N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VW 259 (735)
T KOG0308|consen 180 NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVW 259 (735)
T ss_pred CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 287 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 287 ~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
++..++ +-..+++|+.||.|+.-|+++......+.. .+.+|..+..+.+.+-+-+++.|+.|+-|...
T Consensus 260 aL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick-~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 260 ALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICK-EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeeCC-CcceEEecCCCCcEEecccCCchhheEeec-CCCchhhhhhccccCCceeeeccccceecCCc
Confidence 999998 789999999999999999988654444443 35678888888766666778889999999864
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-28 Score=230.65 Aligned_cols=294 Identities=16% Similarity=0.258 Sum_probs=229.4
Q ss_pred ceeecEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceE--EE--EccCCCCEEEEEEcCCCCEEEE-E
Q 006497 58 SFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MI--LQAHDHAIRSMVWSHNDNWMVS-G 132 (643)
Q Consensus 58 ~~~~~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~--~~--l~~h~~~V~~l~~s~~~~~L~s-g 132 (643)
.|.-.+....|++|++.|++++|+.||++|++++.|+.|+||++++.+.. +. ..-..+.-+.+.|++|.+-+++ +
T Consensus 72 ~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 72 TFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred CcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEE
Confidence 34445566789999999999999999999999999999999998874321 11 1112346688999999875554 4
Q ss_pred eCCCcEEEEECCCCc---e---------EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCC
Q 006497 133 DDGGAIKYWQNNMNN---V---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 200 (643)
Q Consensus 133 ~~dg~V~iwd~~~~~---~---------~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~ 200 (643)
-...++++|.+...+ . ...-+.|...|..+-...++.+|++++.|..|.+||++ ++.+..+......
T Consensus 152 ~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~ 230 (420)
T KOG2096|consen 152 KRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSS 230 (420)
T ss_pred ccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccccc
Confidence 455678999653221 1 11123466677778888888999999999999999998 7888888877777
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECC---CC-----ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAK---SG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272 (643)
Q Consensus 201 V~~l~~sp~~~~l~sgs~dg~I~iwD~~---~~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 272 (643)
-...+++|+|++|++++..-.|++|.+- .| +.+..+++|.+.|..++|+++...+++.+.||+++|||++-.
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 7889999999999999998999999863 22 345678999999999999999999999999999999998521
Q ss_pred -------eEEEEe----ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEE
Q 006497 273 -------KELESF----RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341 (643)
Q Consensus 273 -------~~~~~~----~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L 341 (643)
+.+++. ......-..++.+| +++.|+.+. ...|.+|..++++..-++...|...|.+|+|+++|+++
T Consensus 311 Y~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 311 YEAGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred EecCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 122222 12233445899999 677776654 45899999998888888888999999999999999999
Q ss_pred EEEECCCeEEEEec
Q 006497 342 CSGSNDHTTKFWCR 355 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~ 355 (643)
++++ |..++++.-
T Consensus 389 atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 389 ATCG-DRYVRVIRN 401 (420)
T ss_pred eeec-ceeeeeecC
Confidence 9987 778888863
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=228.29 Aligned_cols=268 Identities=19% Similarity=0.290 Sum_probs=223.6
Q ss_pred EEEEEECCCcEEEEeCCCC------------ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 006497 86 RLITGSQSGEFTLWNGQSF------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 86 ~L~tgs~dg~I~iwd~~~~------------~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~ 153 (643)
.|++|+....|.=+++.-. ..+..+..|.+.|++++.+ +.++|+|+.|-+|+|||+........+.
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll 80 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILL 80 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhccee
Confidence 3667777666655553321 1245567899999999985 8999999999999999999999888899
Q ss_pred CCCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 006497 154 AHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~--~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 231 (643)
.|.+.|+++.|.++.. .|++|++||.|.+|+....+++..++.|...|+.|+++|.+++-++.+.|+.+++||+-+++
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999999999998765 79999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q 006497 232 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311 (643)
Q Consensus 232 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd 311 (643)
.-..+. .....+.|.|++.|.+++....+ .|-||.+.+.+...++. ....+.|+.|. ++..|++|..|+.|.+||
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l--~~~~L~vG~d~~~i~~~D 235 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE-NPKRILCATFL--DGSELLVGGDNEWISLKD 235 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh-ccccceeeeec--CCceEEEecCCceEEEec
Confidence 665554 23344569999999999888765 59999998877666655 33667788876 688999999999999999
Q ss_pred CCCCcceEEEecccCcceEEEEE--cCCCCEEEEEECCCeEEEEecCCCCCc
Q 006497 312 VGHETPQVEIHNVHDNTVWDLAW--HPIGYLLCSGSNDHTTKFWCRNRPGDT 361 (643)
Q Consensus 312 ~~~~~~~~~~~~~h~~~V~~l~~--s~d~~~L~sgs~Dg~V~iWd~~~~~~~ 361 (643)
.++. .....+.+|...|.++.+ .+++.+|++++.||.|+|||++...+.
T Consensus 236 ~ds~-~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 236 TDSD-TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred cCCC-ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9874 445556689999999984 345789999999999999999875444
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=232.82 Aligned_cols=247 Identities=21% Similarity=0.360 Sum_probs=223.9
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
+.-++.+|++.|...+++.+..+.|+++.|-+-+|||.-++..+..+. |.--|.+++|+.|.++|++|+.+..++|||+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 456789999999999999999889999999999999999999888886 8889999999999999999999999999999
Q ss_pred CCCc-eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 144 NMNN-VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 144 ~~~~-~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
+..+ ....+.+|.+.|..+.|+..++.|+++++|++|++||.+++..+.++. ....|+++.++++|++|.++. .+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~-gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAY-GSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEec-Ccee
Confidence 8754 345668999999999999999999999999999999999999999887 566899999999998776654 5789
Q ss_pred EEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEe-ecCCCCeEEEEEecCCCCEEEEE
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
++||.++...++.++ -...|.+..++|+...+++|++|..++.||..+++.+..+ ++|.+.|.|+.|+| ++.+.++|
T Consensus 208 ~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsG 285 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASG 285 (334)
T ss_pred EEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeecc
Confidence 999999998888876 4456899999999999999999999999999999999986 89999999999999 89999999
Q ss_pred eCCCcEEEEECCCC
Q 006497 302 SLDGSIFHWLVGHE 315 (643)
Q Consensus 302 s~dg~I~iwd~~~~ 315 (643)
+.||+|+||...-.
T Consensus 286 SEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceEEEEEecCC
Confidence 99999999987543
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-29 Score=230.64 Aligned_cols=242 Identities=23% Similarity=0.420 Sum_probs=213.0
Q ss_pred CCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC-CceEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc
Q 006497 71 NRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN 147 (643)
Q Consensus 71 h~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~~~ 147 (643)
-.+.+..++|+++. +.+++++.||+++|||+.. .+.+..++.|...|.++.|+.. .+.+++++.|++|++|+.+..+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 46789999999875 6788999999999999543 4568889999999999999884 4577888999999999999999
Q ss_pred eEEeecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEEECCCcEEEE
Q 006497 148 VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGKDSLVKLW 225 (643)
Q Consensus 148 ~~~~~~~~~~~I~~l~~s~d-~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sgs~dg~I~iw 225 (643)
.+.++.+|...|...+|+|. .+.+++++.|+++++||++.......+..|..+|.|+.|+. +.+.|++|+.|+.|++|
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 99999999999999999984 57899999999999999987666666888999999999997 55689999999999999
Q ss_pred ECCCCc-eeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCEEEEEe
Q 006497 226 DAKSGR-ELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 226 D~~~~~-~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
|+++-+ .+..+.+|.-.|+.|+|+| ...+|++++.|-+++|||.... ..+.+++.|..-+..+.|+.....++|+++
T Consensus 219 Dir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~g 298 (311)
T KOG0277|consen 219 DIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTG 298 (311)
T ss_pred ehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecc
Confidence 999754 5778899999999999999 4568999999999999998744 456677788899999999998899999999
Q ss_pred CCCcEEEEEC
Q 006497 303 LDGSIFHWLV 312 (643)
Q Consensus 303 ~dg~I~iwd~ 312 (643)
.|+.++||+-
T Consensus 299 WDe~l~Vw~p 308 (311)
T KOG0277|consen 299 WDELLYVWNP 308 (311)
T ss_pred cccceeeecc
Confidence 9999999984
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=238.27 Aligned_cols=246 Identities=19% Similarity=0.302 Sum_probs=217.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee--------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~--------~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
....+.|..|+||+++|++|+.||.|.+||..++++.+.+ .-+.+.|.|+.|+.|...|++|+.||.|+||.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 4567889999999999999999999999999988766544 35678999999999999999999999999999
Q ss_pred CCCCeeeeEee-ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCc
Q 006497 185 FARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI 263 (643)
Q Consensus 185 l~~~~~~~~~~-~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~ 263 (643)
++++.+++.+. .|...|+|+.|+.|+..|++++.|.+++|.-+++|++++.+++|.+.|+...|.+||+++++++.||+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt 371 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT 371 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc
Confidence 99999999987 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc--cCcceEEEEEcCCCC
Q 006497 264 IKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGY 339 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~d~~ 339 (643)
|+||+.++.+++.+|+. .+..|+++...|.+...+++|...++|+|.++.. .....+..+ ..+...+.+.++.|.
T Consensus 372 vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGe 450 (508)
T KOG0275|consen 372 VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSGKREGGDFINAILSPKGE 450 (508)
T ss_pred EEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccCCccCCceEEEEecCCCc
Confidence 99999999999999874 4567889999998889999999999999998843 222222222 234566778899999
Q ss_pred EEEEEECCCeEEEEecCCCC
Q 006497 340 LLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 340 ~L~sgs~Dg~V~iWd~~~~~ 359 (643)
++++.++|+.++.|.+...+
T Consensus 451 wiYcigED~vlYCF~~~sG~ 470 (508)
T KOG0275|consen 451 WIYCIGEDGVLYCFSVLSGK 470 (508)
T ss_pred EEEEEccCcEEEEEEeecCc
Confidence 99999999999999986543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=255.11 Aligned_cols=248 Identities=16% Similarity=0.226 Sum_probs=197.6
Q ss_pred EECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------eEEeecCCCCCeE
Q 006497 90 GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNN--------VKANKSAHKESVR 160 (643)
Q Consensus 90 gs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~~~--------~~~~~~~~~~~I~ 160 (643)
|+.++.|+||+......+..+.+|.+.|.+++|+++ +++|++|+.|++|+|||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 556789999998887788889999999999999996 7899999999999999987542 2335678999999
Q ss_pred EEEEecCCCE-EEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccC
Q 006497 161 DLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 239 (643)
Q Consensus 161 ~l~~s~d~~~-l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~ 239 (643)
+++|++++.. |++++.|++|+|||+++.+.+..+. +...|.+++|++++++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5788999999999999988777665 5678999999999999999999999999999999999999888
Q ss_pred CCcEEE-----EEEcCCCCEEEEEECCC----cEEEEECCC-CeEEEEeecCCC-CeEEEEEecCCCCEEEEEeCCCcEE
Q 006497 240 KNMVLC-----VKWNQNGNWVLTASKDQ----IIKLYDIRA-MKELESFRGHRK-DVTALAWHPFHEEYFVSGSLDGSIF 308 (643)
Q Consensus 240 ~~~i~~-----l~~sp~g~~l~s~s~dg----~I~iwd~~~-~~~~~~~~~~~~-~I~~l~~sp~~~~~l~sgs~dg~I~ 308 (643)
.+.+.+ ..|++++++|++++.|+ .|+|||+++ .+.+..+..+.. .+....|.++++.++++|+.|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 876433 33457888999888764 799999995 455554432221 2222344454688999999999999
Q ss_pred EEECCCCcceEEEecccCcceEEEEEcCCC
Q 006497 309 HWLVGHETPQVEIHNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 309 iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~ 338 (643)
+|++..+.........+...+.+++|.|+.
T Consensus 289 ~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 289 YYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEccCCcEEeecccccCCCccceEEcccc
Confidence 999976532222222355678899999864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=228.78 Aligned_cols=243 Identities=22% Similarity=0.352 Sum_probs=213.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~--~L~sg~~dg~V~iwd~~ 144 (643)
.+..|.++|++++.+ +.++|+|+.|.+|+|||+.+.+....+..|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 457899999999996 89999999999999999999999999999999999999988754 89999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
..+++..++.|...|+.|+++|.+++.++.+.|+.++.||+.+++.-..+.. ...-+.|.|++.|.+++++..+ .|-|
T Consensus 116 ~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-~~~at~v~w~~~Gd~F~v~~~~-~i~i 193 (362)
T KOG0294|consen 116 SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-KNKATLVSWSPQGDHFVVSGRN-KIDI 193 (362)
T ss_pred CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-CCcceeeEEcCCCCEEEEEecc-EEEE
Confidence 9999999999999999999999999999999999999999988876655542 2334559999999999988875 4999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEec-CCCCEEEEEeC
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP-FHEEYFVSGSL 303 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp-~~~~~l~sgs~ 303 (643)
|.+++.+....+. ....+.|+.|. ++.+|++|..|+.|++||.++...+..+.+|..+|.++.+-. ....+|++++.
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 9999877666555 33567888886 567899999999999999999999999999999999998543 25679999999
Q ss_pred CCcEEEEECCCC
Q 006497 304 DGSIFHWLVGHE 315 (643)
Q Consensus 304 dg~I~iwd~~~~ 315 (643)
||.|++||++..
T Consensus 272 DG~I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGFIKVWDIDME 283 (362)
T ss_pred CceEEEEEcccc
Confidence 999999999766
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-28 Score=235.05 Aligned_cols=246 Identities=24% Similarity=0.417 Sum_probs=212.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEeCCCCce----EEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~---~L~tgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg 136 (643)
....+.+|.+.|.+++|.-... .|++++.|.++++|..+.++. ++...+|...|.++....++.++++|+.|.
T Consensus 136 ~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 136 SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccc
Confidence 4567889999999888865443 599999999999998776543 334459999999999999999999999999
Q ss_pred cEEEEECCC-------------------------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeee
Q 006497 137 AIKYWQNNM-------------------------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191 (643)
Q Consensus 137 ~V~iwd~~~-------------------------~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~ 191 (643)
+|.||+.++ ...+..+.+|.+.|.++.|+. ...+++++.|.+|+.||++++..+
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~ 294 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLK 294 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccce
Confidence 999998321 112345578999999999987 678999999999999999999988
Q ss_pred eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc---eeEEeccCCCcEEEEEEcCC-CCEEEEEECCCcEEEE
Q 006497 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLY 267 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~---~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~I~iw 267 (643)
..+.. ...++|+++++..++|++|+.|..|++||.+++. ...++.+|.+.|.++.|+|. ...|++++.|+++++|
T Consensus 295 ~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 295 STLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred eeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 88874 4579999999999999999999999999999763 45678899999999999994 5578899999999999
Q ss_pred ECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 268 DIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 268 d~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
|+|+.+ .+..+.+|...|.++.|+ ++.+|++|+.|.+|+|+...
T Consensus 374 DvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 374 DVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EeccCCCcceeeccCCceEEEEecc--CCceEEeccCcceEEEeccc
Confidence 999988 899999999999999998 58899999999999998753
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=254.32 Aligned_cols=242 Identities=18% Similarity=0.306 Sum_probs=192.2
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE-------------EeecCCCCCeEEEEEec-CCCEEEEEeCCCcEE
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------ANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVK 181 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~-------------~~~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~ 181 (643)
.|+....+.++..+++++.+.....|+...+..+ ..+.+|.+.|.+++|++ ++++|++++.|++|+
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIk 101 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIM 101 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEE
Confidence 3444444445555566666665566654332211 13568999999999999 788999999999999
Q ss_pred EEECCCC-------eeeeEeeccCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCC
Q 006497 182 VWDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 253 (643)
Q Consensus 182 iwdl~~~-------~~~~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~ 253 (643)
|||+.+. +.+..+.+|...|.+++|++++ ++|++++.|++|+|||+++++.+..+..|...|.+++|+++++
T Consensus 102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~ 181 (493)
T PTZ00421 102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS 181 (493)
T ss_pred EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC
Confidence 9999754 2456788899999999999975 6999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEeecCCCC-eEEEEEecCCCCEEEEEe----CCCcEEEEECCCCcceEEEeccc-Cc
Q 006497 254 WVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVSGS----LDGSIFHWLVGHETPQVEIHNVH-DN 327 (643)
Q Consensus 254 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~~l~sgs----~dg~I~iwd~~~~~~~~~~~~~h-~~ 327 (643)
+|++++.|+.|+|||+++++.+.++..|... +..+.|.+ +...|++++ .|+.|++||+++..........+ ..
T Consensus 182 lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~ 260 (493)
T PTZ00421 182 LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS 260 (493)
T ss_pred EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC
Confidence 9999999999999999999999999888764 45678888 455555543 47899999998766555444323 34
Q ss_pred ceEEEEEcCCCCEEEEEE-CCCeEEEEecCCC
Q 006497 328 TVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRP 358 (643)
Q Consensus 328 ~V~~l~~s~d~~~L~sgs-~Dg~V~iWd~~~~ 358 (643)
.+....|++++++|++++ .|+.|++||+...
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 566678999999999887 4999999999653
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=244.36 Aligned_cols=244 Identities=27% Similarity=0.412 Sum_probs=216.0
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEEC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~ 143 (643)
.+++...++.|.+++|-.||++||+|+..|.|+|||..+...++.+.+|...|..+.|++++ ..|++|++|+.+++||+
T Consensus 61 ~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~ 140 (487)
T KOG0310|consen 61 RKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDL 140 (487)
T ss_pred hhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEc
Confidence 34566678899999999999999999999999999988777888899999999999999965 57778899999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~-~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
.+..+...+.+|++.|.|.+|++-. ..+++|+.||+|++||++.. ..+.++. |+.+|..+.+-+.|.+|++++. ..
T Consensus 141 s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgG-n~ 218 (487)
T KOG0310|consen 141 STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGG-NS 218 (487)
T ss_pred CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCC-Ce
Confidence 9998877889999999999999865 47899999999999999887 5555555 8999999999999999999875 67
Q ss_pred EEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEE
Q 006497 222 VKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 222 I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
|++||+-+| +.+..+..|...|+|+++..++..|++++-|+.|++||+.+.+.+..+. ..+.|.++++++ ++..++.
T Consensus 219 vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~vi 296 (487)
T KOG0310|consen 219 VKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVI 296 (487)
T ss_pred EEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEE
Confidence 999999965 4555555699999999999999999999999999999999999998887 778999999999 8889999
Q ss_pred EeCCCcEEEEEC
Q 006497 301 GSLDGSIFHWLV 312 (643)
Q Consensus 301 gs~dg~I~iwd~ 312 (643)
|-.||.+.+-+.
T Consensus 297 GmsnGlv~~rr~ 308 (487)
T KOG0310|consen 297 GMSNGLVSIRRR 308 (487)
T ss_pred ecccceeeeehh
Confidence 999999877744
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=226.31 Aligned_cols=270 Identities=20% Similarity=0.271 Sum_probs=219.5
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCC-ce-EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 69 NKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSF-NF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 69 ~~h~~~I~~i~~sp-dg~~L~tgs~dg~I~iwd~~~~-~~-~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
..-++.|.+|+||| ...+|++++.|++||+|+++.. .. -+....|++.|.+++|+.||..+++|+.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34578899999999 4556668999999999998862 22 244567899999999999999999999999999999999
Q ss_pred CceEEeecCCCCCeEEEEEecCCC--EEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDL--KFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~--~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
++... +..|...|.++.|.+... .|++|++|.+|+.||.+....+.++.. -+.+.++++- ..+++++..+..|.
T Consensus 104 ~Q~~~-v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~--~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 104 GQVSQ-VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL--YPMAVVATAERHIA 179 (347)
T ss_pred CCeee-eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec-cceeeehhcc--CceeEEEecCCcEE
Confidence 96554 578999999999988765 799999999999999999888888774 4467776653 56888999999999
Q ss_pred EEECCCCceeEEe--ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC--eEEEEeecCCC---------CeEEEEE
Q 006497 224 LWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM--KELESFRGHRK---------DVTALAW 290 (643)
Q Consensus 224 iwD~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~--~~~~~~~~~~~---------~I~~l~~ 290 (643)
+|+++++....+. ...+..++||+...|....+.|+.+|.+.|..+... +.-.+|+.|+. .|++|+|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 9999876433221 123445899999998888899999999999999876 44556666652 4778999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEE
Q 006497 291 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 344 (643)
Q Consensus 291 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sg 344 (643)
+| ....|++.+.||++.+||-+...++... ..|..+|++.+|+.+|.+++-+
T Consensus 260 hP-~hgtlvTaGsDGtf~FWDkdar~kLk~s-~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 260 HP-VHGTLVTAGSDGTFSFWDKDARTKLKTS-ETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ec-ccceEEEecCCceEEEecchhhhhhhcc-CcCCCccceeEecCCCCEEEEE
Confidence 99 7788999999999999998766655443 3578899999999999888755
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=250.19 Aligned_cols=241 Identities=24% Similarity=0.453 Sum_probs=219.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEcc-CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 149 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~ 149 (643)
++..|+++.|+++|++|++|..+|.|.|||..+.+.+..+.. |...|-+++|+ +..+.+|+.|+.|.++|+...+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 488999999999999999999999999999999999999998 99999999998 678999999999999999887655
Q ss_pred Ee-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCC-CCEEEEE--ECCCcEEEE
Q 006497 150 AN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSG--GKDSLVKLW 225 (643)
Q Consensus 150 ~~-~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~-~~~l~sg--s~dg~I~iw 225 (643)
.. +.+|...|..++|++|+++||+++.|+.|.|||....+.+..+..|...|.+++|+|- ..+||+| +.|++|++|
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 54 7899999999999999999999999999999999888889999999999999999994 5678886 469999999
Q ss_pred ECCCCceeEEeccCCCcEEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeC
Q 006497 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 303 (643)
Q Consensus 226 D~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~--s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~ 303 (643)
|..+++.+..+. ..+.|.+|.|++..+-|+++ ..++.|.||+..+.+.+..+.+|...|..++++| ++..|++++.
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~ 451 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAA 451 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecc
Confidence 999999988876 56779999999988767654 4677899999999999999999999999999999 7999999999
Q ss_pred CCcEEEEECCCC
Q 006497 304 DGSIFHWLVGHE 315 (643)
Q Consensus 304 dg~I~iwd~~~~ 315 (643)
|.++++|++-..
T Consensus 452 DETlrfw~~f~~ 463 (484)
T KOG0305|consen 452 DETLRFWNLFDE 463 (484)
T ss_pred cCcEEeccccCC
Confidence 999999998654
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=249.91 Aligned_cols=332 Identities=18% Similarity=0.234 Sum_probs=255.8
Q ss_pred cccccchhhhHHhheeEEEeeccCcCccccccCchhhhcCccceEeecCCCCceeecEEEEeecCCCCCeEEEEEcCCCC
Q 006497 6 QRRAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGR 85 (643)
Q Consensus 6 ~rr~~~~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~spdg~ 85 (643)
++...+..+.+.++.-+++|++..-.+........++...++.+..... +-|+..--|+ |.+
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~--------------nv~~~~~acl---p~~- 393 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPC--------------NVHSPTAACL---PRG- 393 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccc--------------cccCcccccC---Ccc-
Confidence 3445566677888889999988866555444444444444443322210 1121111111 122
Q ss_pred EEEEEECCCcEEEEeCCCCceEEE-------------------------------------EccCCCCEEEEEEcCCCCE
Q 006497 86 RLITGSQSGEFTLWNGQSFNFEMI-------------------------------------LQAHDHAIRSMVWSHNDNW 128 (643)
Q Consensus 86 ~L~tgs~dg~I~iwd~~~~~~~~~-------------------------------------l~~h~~~V~~l~~s~~~~~ 128 (643)
.++|+++|++|+|||++....-.+ .-.....|.+++.++++++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 489999999999999775211000 0012346899999999999
Q ss_pred EEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCC-CeeeeEeeccCCCeEEE
Q 006497 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSV 204 (643)
Q Consensus 129 L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d---~~~l~s~s~dg~I~iwdl~~-~~~~~~~~~~~~~V~~l 204 (643)
||+|+.-|+++|||+...+....+..|+.+|.||.|+.. .++||+++.|..|+|||+.. ...+.++.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 999999999999999999988889999999999999863 46799999999999999954 45677888999999999
Q ss_pred EEcCCC--CEEEEEECCCcEEEEECCCCceeEEec-----cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 006497 205 DWHPTK--SLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 277 (643)
Q Consensus 205 ~~sp~~--~~l~sgs~dg~I~iwD~~~~~~~~~~~-----~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~ 277 (643)
.|...+ ..+++++.|..|.+--.+.......+. ..+..+..++..++.+++++++.|..|+|||+.+++..+.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~ 633 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKS 633 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeee
Confidence 998776 678899999887654433222222222 1245689999999999999999999999999999999999
Q ss_pred eec---CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 278 FRG---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 278 ~~~---~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
|++ |++....+...| .+.||++.+.|.++.++|+.+++...... +|...|+.+.|.+|.+.|++.+.||.|.||.
T Consensus 634 FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 634 FKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred ecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEE
Confidence 985 556788899999 89999999999999999998877665555 6999999999999999999999999999999
Q ss_pred cCC
Q 006497 355 RNR 357 (643)
Q Consensus 355 ~~~ 357 (643)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 854
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=242.85 Aligned_cols=282 Identities=18% Similarity=0.301 Sum_probs=242.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---ceEEEEc--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 68 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 68 l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~---~~~~~l~--~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
...|..-|.++++|...+.++||+ .|.|+|||+..- ..+..+. ..++.|+++.+.+|++.|++|++-.+|.|||
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWD 493 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWD 493 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeee
Confidence 346888899999999999999988 568999997642 2233332 2467899999999999999999999999999
Q ss_pred CCCCc--eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 143 NNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 143 ~~~~~--~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
+.... +...+....-...+|+.++|.+..++|+.||.|.|||+.+...++.+.+|.+.+.||.++.||..|.+|+-|+
T Consensus 494 LAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 494 LAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred ccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 87654 3344444456678899999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEE
Q 006497 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 221 ~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
+||.||+++++.+.... ..+.|.++.++|++.+|++|-+++.+.|.... +.....+..|++.|.++.|.+ .++++++
T Consensus 574 tvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKFa~-cGkwfvS 650 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKFAY-CGKWFVS 650 (705)
T ss_pred ceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecC-CccceeecccccEEEEEEecc-cCceeee
Confidence 99999999988776544 55779999999999999999999999998865 444556677999999999999 8999999
Q ss_pred EeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
.+.|+.+..|..-.+..++.... ...|.++.++.|+++|+||+.|....||.+
T Consensus 651 tGkDnlLnawrtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 651 TGKDNLLNAWRTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCchhhhhhccCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999988877776654 678999999999999999999999998876
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=222.22 Aligned_cols=268 Identities=21% Similarity=0.309 Sum_probs=223.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
-++.|++|.|++.+..|++++.||++++||+....+...++ |..++.+++|.. ...+++|+.||.|+.+|+++++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence 36789999999999999999999999999998876655554 899999999985 5689999999999999999887665
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 151 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 230 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 230 (643)
. ..|...|.||.++.....++++++|++|++||.+....+..+. ....|.++... ++.|++|+.|..|.+||+++.
T Consensus 90 i-gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 90 I-GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred e-ccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccc
Confidence 4 5799999999999988899999999999999998755555554 34489898875 778999999999999999987
Q ss_pred ceeEEec--cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEeecCCC---------CeEEEEEecCCC
Q 006497 231 RELCSFH--GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRGHRK---------DVTALAWHPFHE 295 (643)
Q Consensus 231 ~~~~~~~--~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~---------~I~~l~~sp~~~ 295 (643)
+...... ..+-.++||++.|++.=.++++.||.|.+=.++.. +....|+.|.. +|++++|+| -.
T Consensus 166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~ 244 (323)
T KOG1036|consen 166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IH 244 (323)
T ss_pred cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-cc
Confidence 6544222 23456899999998888999999999988777655 33445555543 589999999 58
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEEC
Q 006497 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 346 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~ 346 (643)
..|+||+.||.|.+||..+.+.+..+... ...|.+++|+.||..||+++.
T Consensus 245 ~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 245 GTFATGGSDGIVNIWDLFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEecCCCceEEEccCcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 88999999999999999888887777654 567999999999999999874
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=236.10 Aligned_cols=246 Identities=25% Similarity=0.467 Sum_probs=207.5
Q ss_pred ccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce----------EEeecCCCCCeEEEEEecCC-CEEEEEeCCC
Q 006497 111 QAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNV----------KANKSAHKESVRDLSFCRTD-LKFCSCSDDT 178 (643)
Q Consensus 111 ~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~~~~~~----------~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg 178 (643)
..|.+.|+.+.+.|.. +++++.+..+.|.|||.....- ...+.+|...-..|+|+... -.|++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 3589999999999865 5677788899999999754321 22567888888889999854 4689999999
Q ss_pred cEEEEECCCCe-------eeeEeeccCCCeEEEEEcCC-CCEEEEEECCCcEEEEECC--CCceeEEeccCCCcEEEEEE
Q 006497 179 TVKVWDFARCQ-------EERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKW 248 (643)
Q Consensus 179 ~I~iwdl~~~~-------~~~~~~~~~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~~--~~~~~~~~~~~~~~i~~l~~ 248 (643)
+|++||+.... ....+.+|+..|..++|++. ..+|+++++|+.+.|||+| +.+......+|.+.|+|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999995433 34567889999999999984 4688999999999999999 55666777899999999999
Q ss_pred cC-CCCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc---------
Q 006497 249 NQ-NGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP--------- 317 (643)
Q Consensus 249 sp-~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~--------- 317 (643)
+| ++.+||+|+.|++|++||+|+.+ .+.++.+|+..|.+|.|+|..+.+|++++.|+++.+||+.....
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~d 360 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAED 360 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhcc
Confidence 99 66788999999999999999854 58899999999999999999999999999999999999965332
Q ss_pred ----eEEEecccCcceEEEEEcCCC-CEEEEEECCCeEEEEecC
Q 006497 318 ----QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 318 ----~~~~~~~h~~~V~~l~~s~d~-~~L~sgs~Dg~V~iWd~~ 356 (643)
++.+..+|...|.++.|+|+. ..|+++++|+.+.||+..
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 235667899999999999986 567889999999999985
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=247.43 Aligned_cols=291 Identities=19% Similarity=0.296 Sum_probs=243.4
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC--ceEEEEccCCCCEEEEEE-cCCCCEEEEEeCCCcEEEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQAHDHAIRSMVW-SHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~-s~~~~~L~sg~~dg~V~iwd 142 (643)
.+++.|.+.|+.++...+++.|++++.|-+|++|+.... -+..++..|.+.|.|+++ ..+..++|+|+-|+.|.|||
T Consensus 67 asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWD 146 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWD 146 (735)
T ss_pred hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEE
Confidence 467889999999999999999999999999999998876 467788899999999999 77888999999999999999
Q ss_pred CCCCce--EE--------ee-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCC
Q 006497 143 NNMNNV--KA--------NK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 211 (643)
Q Consensus 143 ~~~~~~--~~--------~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~ 211 (643)
++++.. +. .+ .++...|.+++.++.+..|++|+.++.|++||.++++.+..+.+|...|+++..+.||.
T Consensus 147 in~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt 226 (735)
T KOG0308|consen 147 INTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT 226 (735)
T ss_pred ccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC
Confidence 997622 11 12 27888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 006497 212 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 212 ~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s 291 (643)
.+++++.||+|++||+...+++.++..|+..|+++..+++-.++++|+.|+.|..=|+++......+-..+..|..+..+
T Consensus 227 ~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~ 306 (735)
T KOG0308|consen 227 RLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLH 306 (735)
T ss_pred eEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999865544444566778888777
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcce-----------------EEEeccc------CcceEEEEEcCCCCEEEEEECCC
Q 006497 292 PFHEEYFVSGSLDGSIFHWLVGHETPQ-----------------VEIHNVH------DNTVWDLAWHPIGYLLCSGSNDH 348 (643)
Q Consensus 292 p~~~~~l~sgs~dg~I~iwd~~~~~~~-----------------~~~~~~h------~~~V~~l~~s~d~~~L~sgs~Dg 348 (643)
. .++-+.+++.|+.|+-|...-...+ ......+ ...|...++-.|.++++|=..+|
T Consensus 307 ~-~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~g 385 (735)
T KOG0308|consen 307 E-HDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKG 385 (735)
T ss_pred c-ccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCC
Confidence 5 3444577788999999965321100 0000000 11344455566889999999999
Q ss_pred eEEEEecCC
Q 006497 349 TTKFWCRNR 357 (643)
Q Consensus 349 ~V~iWd~~~ 357 (643)
.+.+||+-.
T Consensus 386 nv~lwDIl~ 394 (735)
T KOG0308|consen 386 NVALWDILA 394 (735)
T ss_pred CEEEEEeee
Confidence 999999843
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=242.50 Aligned_cols=224 Identities=20% Similarity=0.347 Sum_probs=181.5
Q ss_pred EeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECCCCe--------eeeEeeccCCCeE
Q 006497 132 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFARCQ--------EERSLTGHGWDVK 202 (643)
Q Consensus 132 g~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d-~~~l~s~s~dg~I~iwdl~~~~--------~~~~~~~~~~~V~ 202 (643)
|+.++.|++|+......+..+.+|...|.+++|+++ +++|++++.|++|+|||+.+.. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999998877778888999999999999996 7899999999999999997532 2345778999999
Q ss_pred EEEEcCCCCE-EEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC
Q 006497 203 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 281 (643)
Q Consensus 203 ~l~~sp~~~~-l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 281 (643)
+++|+|++.. |++++.|++|+|||+++++.+..+. +...|.+++|+++|++|++++.|+.|+|||+++++.+.++.+|
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 9999998875 5788999999999999998877776 5678999999999999999999999999999999999999999
Q ss_pred CCCeEEEE-----EecCCCCEEEEEeCCC----cEEEEECCCCcceEEEecc--cCcceEEEEEcCCCCEEEEEECCCeE
Q 006497 282 RKDVTALA-----WHPFHEEYFVSGSLDG----SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTT 350 (643)
Q Consensus 282 ~~~I~~l~-----~sp~~~~~l~sgs~dg----~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~L~sgs~Dg~V 350 (643)
.+.+.+.. |++ ++.+|++++.|+ +|+|||++.....+..... +.+.+.......++.++++|+.|++|
T Consensus 209 ~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tI 287 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNC 287 (568)
T ss_pred cCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence 87654333 345 677888877664 7999999864443333221 22233333334458889999999999
Q ss_pred EEEecCC
Q 006497 351 KFWCRNR 357 (643)
Q Consensus 351 ~iWd~~~ 357 (643)
++|++..
T Consensus 288 r~~e~~~ 294 (568)
T PTZ00420 288 RYYQHSL 294 (568)
T ss_pred EEEEccC
Confidence 9999964
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=213.22 Aligned_cols=246 Identities=20% Similarity=0.376 Sum_probs=214.1
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe--ecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEE
Q 006497 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--KSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 108 ~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~--~~~~~~~I~~l~~s~d-~~~l~s~s~dg~I~iwd 184 (643)
+.+++|...|.+|+|+.+|..|++++.|+++++|+++..+.... ..+|.+.|..++|++. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 55678999999999999999999999999999999987755443 3688999999999874 46799999999999999
Q ss_pred CCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcE
Q 006497 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 264 (643)
Q Consensus 185 l~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I 264 (643)
++..++...+......| -+.|+|+++++++++.|..|.+.|.++.+.+...+ ....+..++|+.++++++.....|+|
T Consensus 94 ~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v 171 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCV 171 (313)
T ss_pred eccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceE
Confidence 99999988887555544 68899999999999999999999999887766654 45568889999888888877778999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEE
Q 006497 265 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 344 (643)
Q Consensus 265 ~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sg 344 (643)
.|......+.+.+++.|.....||.|+| ++++||+|+.|-.+.+||++..-.+. ....++-+|..|+|+.||++||++
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R-~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICER-CISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhhe-eeccccCceEEEEeccCcceeecc
Confidence 9999999999999999999999999999 89999999999999999996554443 344578899999999999999999
Q ss_pred ECCCeEEEEecCC
Q 006497 345 SNDHTTKFWCRNR 357 (643)
Q Consensus 345 s~Dg~V~iWd~~~ 357 (643)
++|..|-|=++++
T Consensus 250 SEDh~IDIA~vet 262 (313)
T KOG1407|consen 250 SEDHFIDIAEVET 262 (313)
T ss_pred CccceEEeEeccc
Confidence 9999998877744
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-25 Score=202.15 Aligned_cols=250 Identities=24% Similarity=0.401 Sum_probs=210.9
Q ss_pred cEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--Cc---eEEEEccCCCCEEEEEEcCC----CCEEEEE
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FN---FEMILQAHDHAIRSMVWSHN----DNWMVSG 132 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~--~~---~~~~l~~h~~~V~~l~~s~~----~~~L~sg 132 (643)
..+.+..+.|++.|+|.+|+++|.+|++|+.|.+|++...+. .+ ...++.-|++.|..++|..+ +.+|+++
T Consensus 79 ~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ 158 (350)
T KOG0641|consen 79 SVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASA 158 (350)
T ss_pred eEEeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEec
Confidence 445677789999999999999999999999999999975432 22 24567789999999999754 4567765
Q ss_pred e-CCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec-------cCCCeEEE
Q 006497 133 D-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-------HGWDVKSV 204 (643)
Q Consensus 133 ~-~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~-------~~~~V~~l 204 (643)
+ .|..|++-|...+.-...+.+|.+.|.++ ++-++-.+++++.|.+|++||++-..++.++.. ..+.|.++
T Consensus 159 gagdc~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 159 GAGDCKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CCCcceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 4 46677777888888888999999999887 445788999999999999999988877776642 23579999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEeec
Q 006497 205 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KELESFRG 280 (643)
Q Consensus 205 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~----~~~~~~~~ 280 (643)
++.|.|++|++|-.|....+||++.++.+..+..|...|.|+.|+|...|+++++.|..|++-|+... -.+.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998631 12344557
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 281 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 281 ~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
|+..+..+.|++ .+-.+++.+.|.++.+|.+.
T Consensus 318 hkdk~i~~rwh~-~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHP-QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecC-ccceeeeccCcceEEEeccC
Confidence 889999999999 67778889999999999763
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=211.84 Aligned_cols=257 Identities=18% Similarity=0.260 Sum_probs=216.0
Q ss_pred CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC--CCcEE
Q 006497 104 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVK 181 (643)
Q Consensus 104 ~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~--dg~I~ 181 (643)
.+..+.+......|+++.|+.+|.+|++++.|.+|+|||..+++.+.++..++-.|..++|....+.++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3445566667889999999999999999999999999999999999999888889999999888877777776 89999
Q ss_pred EEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC
Q 006497 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 182 iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 261 (643)
..++.+.+.++.+.+|...|++|+.+|-++.+++++.|++|++||++..++...+..... ..++|+|+|-++|++...
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCC
Confidence 999999999999999999999999999999999999999999999998887776653333 458899999999999988
Q ss_pred CcEEEEECCCCe--EEEEee---cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCc---ceEEEE
Q 006497 262 QIIKLYDIRAMK--ELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN---TVWDLA 333 (643)
Q Consensus 262 g~I~iwd~~~~~--~~~~~~---~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~---~V~~l~ 333 (643)
..|++||+|+.. ...++. ....+.+.+.|++ ++++|+.++..+.+++.|.-++.....+.. +.. --.+.+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSG-YPNAGNLPLSAT 239 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEee-ccCCCCcceeEE
Confidence 899999999752 233443 3467899999999 889999999999999999877765444332 222 125778
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCCCCcccc
Q 006497 334 WHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 364 (643)
Q Consensus 334 ~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~ 364 (643)
|+||+++|++|+.||+|.+|+++...+...-
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~ 270 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVL 270 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCCcEeeEe
Confidence 9999999999999999999999765554443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-25 Score=240.58 Aligned_cols=277 Identities=19% Similarity=0.345 Sum_probs=235.4
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 69 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 147 (643)
Q Consensus 69 ~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~ 147 (643)
..|....+.|+|.++|++|++++.||.|++|+..+. +.-.++..+...|.+++.. +.+|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 468889999999999999999999999999986655 4444454477788887764 5699999999999999998888
Q ss_pred eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 148 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 148 ~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
....+....-.+++++|+.+|+++|.|++|-.|++.++.+...+..+++|...|.+|.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77677777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccC--------CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCE
Q 006497 228 KSGRELCSFHGH--------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 297 (643)
Q Consensus 228 ~~~~~~~~~~~~--------~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~~ 297 (643)
.++.+..++.+- ...+..++|+|++..|++...|+.|++|+...++....++. +...+.+++|+| ++.|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-nG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-NGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-CCcE
Confidence 998776665421 33467789999988888888999999999999998877763 344599999999 7999
Q ss_pred EEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEE
Q 006497 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 298 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iW 353 (643)
||+++.||.|.|||+++-.. ......|++++|.++.+.|-.....|...+|
T Consensus 247 iAAs~~~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EeeeccCCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999987221 2234579999999998777666666655555
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=236.86 Aligned_cols=354 Identities=20% Similarity=0.351 Sum_probs=260.7
Q ss_pred CccCcccccc---hhhhHHhheeEEEeeccCcCccccccCchhhhcCccc-eEeecCCCCceeecEEEEeecCCCCCeEE
Q 006497 2 RKLTQRRAVD---YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPT-VAYTDNPSTSFAAKFVHTSLNKNRCSINR 77 (643)
Q Consensus 2 rk~~~rr~~~---~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~I~~ 77 (643)
|.+..++... +..+..++..||+|++...+..-.... ......+.. ..+....... -..-++..+.||.+.|++
T Consensus 195 rsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~-e~~~t~~~~~~~f~~l~~i~-~~is~eall~GHeDWV~s 272 (764)
T KOG1063|consen 195 RSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNER-EDSLTTLSNLPVFMILEEIQ-YRISFEALLMGHEDWVYS 272 (764)
T ss_pred hhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcccccc-ccccccccCCceeeeeeeEE-EEEehhhhhcCcccceEE
Confidence 4444444443 456788999999998876542221110 000000000 0000000000 111233556799999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCC--ceEEE-----EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---c
Q 006497 78 VLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMI-----LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---N 147 (643)
Q Consensus 78 i~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~-----l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~---~ 147 (643)
+.|++++..|++++.|.++.||.-++. --+.. ..+.........|+++++.+++-+..|-.++|..... .
T Consensus 273 v~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~ 352 (764)
T KOG1063|consen 273 VWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWT 352 (764)
T ss_pred EEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcccee
Confidence 999999999999999999999975543 22211 2233456889999999999999999999999983332 2
Q ss_pred eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CC---eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 148 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RC---QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 148 ~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~-~~---~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
....+.+|.+.|++++|.+.|.+|++++.|.+-++|--- +. .++..-..|...++|+++-+....+++|.++..+|
T Consensus 353 ~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlR 432 (764)
T KOG1063|consen 353 QEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLR 432 (764)
T ss_pred eccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeee
Confidence 334457999999999999999999999999999998653 11 22333345888999999987666788888888899
Q ss_pred EEECCC-------------------------------------------Cce----------------------------
Q 006497 224 LWDAKS-------------------------------------------GRE---------------------------- 232 (643)
Q Consensus 224 iwD~~~-------------------------------------------~~~---------------------------- 232 (643)
+|+.-. +..
T Consensus 433 vF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~ 512 (764)
T KOG1063|consen 433 VFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQN 512 (764)
T ss_pred eecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHh
Confidence 997521 000
Q ss_pred -----eEEeccCCCcEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe
Q 006497 233 -----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 233 -----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
+.++.+|...|.+++.++++++|++++... .|++|+..+...+..+..|.-.|+.++||+ ++++|++.+
T Consensus 513 tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvs 591 (764)
T KOG1063|consen 513 TLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVS 591 (764)
T ss_pred ccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEee
Confidence 122236778899999999999999998543 699999999999999999999999999999 899999999
Q ss_pred CCCcEEEEECCCCcce---EEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 303 LDGSIFHWLVGHETPQ---VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 303 ~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
.|.++.+|........ ......|..-|+++.|+|++++++|+|.|.+|+||.....
T Consensus 592 RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 592 RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999988443322 2235679999999999999999999999999999998664
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.5e-26 Score=225.37 Aligned_cols=239 Identities=18% Similarity=0.289 Sum_probs=218.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe
Q 006497 115 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 194 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~ 194 (643)
..++++...+..+.+++|+.|..+.++|...++.+..+++|...|+.+.++++...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 46788888877789999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred eccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc--CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 195 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272 (643)
Q Consensus 195 ~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 272 (643)
..|+..|+.+..++.+.+|++++.|+++.+.|+++++.+..... ..-.+++.+|+|||.+|.+|..|+.|+|||+++.
T Consensus 300 ~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~ 379 (506)
T KOG0289|consen 300 RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQ 379 (506)
T ss_pred ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCc
Confidence 89999999999999999999999999999999999998877654 2345899999999999999999999999999999
Q ss_pred eEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 273 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 273 ~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
..+..|.+|.+.|..++|+. ++.+|+++++|+.|++||+++.+....+.......|.+++|...|.+|+.++.|=.|++
T Consensus 380 ~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~ 458 (506)
T KOG0289|consen 380 TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI 458 (506)
T ss_pred cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence 99999999999999999998 99999999999999999999888766666555567999999999999999987766666
Q ss_pred Ee
Q 006497 353 WC 354 (643)
Q Consensus 353 Wd 354 (643)
++
T Consensus 459 ~~ 460 (506)
T KOG0289|consen 459 CK 460 (506)
T ss_pred Ee
Confidence 65
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=228.82 Aligned_cols=251 Identities=22% Similarity=0.433 Sum_probs=209.4
Q ss_pred EEEEeecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCc----------eEEEEccCCCCEEEEEEcCCC-CEEE
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFN----------FEMILQAHDHAIRSMVWSHND-NWMV 130 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~-~L~tgs~dg~I~iwd~~~~~----------~~~~l~~h~~~V~~l~~s~~~-~~L~ 130 (643)
+.....-.|.+.|+.+.+-|... .||+.+..+.|+|||..+.. ....+.+|.+.-+.|+|+... -+|+
T Consensus 115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 33444556999999999999774 56677888999999965422 233788899888899999854 4899
Q ss_pred EEeCCCcEEEEECCCCc-------eEEeecCCCCCeEEEEEecC-CCEEEEEeCCCcEEEEECC--CCeeeeEeeccCCC
Q 006497 131 SGDDGGAIKYWQNNMNN-------VKANKSAHKESVRDLSFCRT-DLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWD 200 (643)
Q Consensus 131 sg~~dg~V~iwd~~~~~-------~~~~~~~~~~~I~~l~~s~d-~~~l~s~s~dg~I~iwdl~--~~~~~~~~~~~~~~ 200 (643)
+++.|+.|++||++... ....+.+|...|.+++|++. ...|+++++|+.+.|||++ +.+......+|...
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~ 274 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE 274 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc
Confidence 99999999999987543 34566899999999999984 4678899999999999999 56666778889999
Q ss_pred eEEEEEcCC-CCEEEEEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCe----
Q 006497 201 VKSVDWHPT-KSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMK---- 273 (643)
Q Consensus 201 V~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~---- 273 (643)
|+|++|+|- +.+||+|+.|++|++||+|+. +++.++.+|+..|.+|.|+|. ...|++++.|+.+.|||+....
T Consensus 275 vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~ 354 (422)
T KOG0264|consen 275 VNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS 354 (422)
T ss_pred eeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccC
Confidence 999999995 557899999999999999975 578889999999999999994 5688899999999999996422
Q ss_pred ----------EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 274 ----------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 274 ----------~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
.+....+|...|..+.|+|.....|++.++|+.+.||+..
T Consensus 355 ~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 355 PEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 2455668999999999999777889999999999999874
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=209.56 Aligned_cols=235 Identities=18% Similarity=0.280 Sum_probs=210.2
Q ss_pred EEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 006497 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188 (643)
Q Consensus 109 ~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~ 188 (643)
.+++|+.+++.|.++.+|++|++++.|.++.||-..+++.+.++.+|.+.|+|+++..+.+++++++.|.++++||++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 46789999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeeeEeeccCCCeEEEEEcCCCCEEEEEECC-----CcEEEEECC-------CCceeEEeccCCCcEEEEEEcCCCCEEE
Q 006497 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-----SLVKLWDAK-------SGRELCSFHGHKNMVLCVKWNQNGNWVL 256 (643)
Q Consensus 189 ~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d-----g~I~iwD~~-------~~~~~~~~~~~~~~i~~l~~sp~g~~l~ 256 (643)
+.+..++ ....|..+.|+.++++++.+.++ +.|.++|++ +.+++.++..+.+.++.+.|.+.+++|+
T Consensus 85 k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 85 KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 9999887 56689999999999988877643 579999998 4455777878889999999999999999
Q ss_pred EEECCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEc
Q 006497 257 TASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 335 (643)
Q Consensus 257 s~s~dg~I~iwd~~~~~~-~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 335 (643)
+|.+||.|.+||+++++. +...+.|...|+.+++++ +..++++++.|.+-++||+++...+..... +.+|++.+++
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~Kty~t--e~PvN~aais 240 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLKTYTT--ERPVNTAAIS 240 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEEEeee--cccccceecc
Confidence 999999999999999755 566678999999999999 899999999999999999988776666554 6799999999
Q ss_pred CCCCEEEEEECC
Q 006497 336 PIGYLLCSGSND 347 (643)
Q Consensus 336 ~d~~~L~sgs~D 347 (643)
|....++.|+..
T Consensus 241 P~~d~VilgGGq 252 (327)
T KOG0643|consen 241 PLLDHVILGGGQ 252 (327)
T ss_pred cccceEEecCCc
Confidence 987777766543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.4e-27 Score=229.66 Aligned_cols=243 Identities=19% Similarity=0.314 Sum_probs=213.8
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
.+.+|.+-.+.|++++|..+++.+++++.|+.+++|++...+...++.+|.+.|+++.|......+++|+.|.+|++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 45677888899999999999999999999999999999999999999999999999999887777999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
....+..++. ....+.+|..+ ...++++-.|++|++||++..........+. .|+++..+.++..|++++.|.++.
T Consensus 291 ~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 291 QKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred hhhheecccc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCcee
Confidence 9877766542 34556666654 5568899999999999999999888888665 899999999999999999999999
Q ss_pred EEECCCCceeEEeccC----CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCC--eEEEEEecCCCCE
Q 006497 224 LWDAKSGRELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD--VTALAWHPFHEEY 297 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--I~~l~~sp~~~~~ 297 (643)
+.|+++.+....+... ....+.++|||++.|+++|+.||.|+||++.++++...+...... |++++|++ .+..
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~ 445 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSG 445 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCch
Confidence 9999998877776432 234788999999999999999999999999999998888866555 99999999 8899
Q ss_pred EEEEeCCCcEEEEE
Q 006497 298 FVSGSLDGSIFHWL 311 (643)
Q Consensus 298 l~sgs~dg~I~iwd 311 (643)
+++++.++.+.+|.
T Consensus 446 Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 446 LLSADKQKAVTLWT 459 (459)
T ss_pred hhcccCCcceEecC
Confidence 99999999999993
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-26 Score=227.12 Aligned_cols=249 Identities=23% Similarity=0.348 Sum_probs=221.4
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE----e---e-----------cCCCCCeEEEEEecCC
Q 006497 107 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----N---K-----------SAHKESVRDLSFCRTD 168 (643)
Q Consensus 107 ~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~----~---~-----------~~~~~~I~~l~~s~d~ 168 (643)
...+..|.-.|+|++++++++++++++.|++|.-|++.+++... . + +.|...|.++++++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 45667799999999999999999999999999999987765331 1 0 2677889999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEE
Q 006497 169 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 248 (643)
Q Consensus 169 ~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~ 248 (643)
++|++++.|..|.|||.++.+.++.+++|.+.|.+++|-...+.|++++.|++|++|+++....+.++.+|.+.|..|..
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida 294 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA 294 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence 99999999999999999999999999999999999999988889999999999999999998889999999999999998
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccC--
Q 006497 249 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD-- 326 (643)
Q Consensus 249 sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-- 326 (643)
...++.+.+|+.|+++++|++. .+....|.++.+.+-|++|- ++..|++|+.||.|.+|++-+.+.+.....+|.
T Consensus 295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~I--n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~ 371 (479)
T KOG0299|consen 295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFI--NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI 371 (479)
T ss_pred hcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEe--cccceeeccCCceEEEeeecccCceeEeecccccc
Confidence 8888888888899999999994 44455677889999999998 689999999999999999988887777655542
Q ss_pred ---------cceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 327 ---------NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 327 ---------~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
..|++++..+..+++++|+.+|.|++|.++..
T Consensus 372 ~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 372 PELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred CCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 27999999999999999999999999999764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=248.37 Aligned_cols=251 Identities=22% Similarity=0.347 Sum_probs=220.0
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC------------------CCceEEEEccCCCCEEEEEEcCCC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ------------------SFNFEMILQAHDHAIRSMVWSHND 126 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~------------------~~~~~~~l~~h~~~V~~l~~s~~~ 126 (643)
..+...|.+.|+|+.|++||++||+|++|+.|.||+.. .++.+..+.+|+..|.+++|+|++
T Consensus 62 l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 62 LCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred heeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc
Confidence 35677899999999999999999999999999999865 234678899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccC------CC
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG------WD 200 (643)
Q Consensus 127 ~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~------~~ 200 (643)
.+||+++.|++|.|||..+.+.+..+.+|...|..+.|.|-|++||+-++|++|+||++.+....+.+.++. ..
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~ 221 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF 221 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence 999999999999999999999999999999999999999999999999999999999988877777766532 35
Q ss_pred eEEEEEcCCCCEEEEEEC----CCcEEEEECCCCceeEEeccCCCcEEEEEEcCC-----CC------------EEEEEE
Q 006497 201 VKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GN------------WVLTAS 259 (643)
Q Consensus 201 V~~l~~sp~~~~l~sgs~----dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~-----g~------------~l~s~s 259 (643)
+..+.|+|||.+|++... -.++.|.+-.+.+.-..+.+|...+.++.|+|. .+ .+|+|+
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgS 301 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGS 301 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEec
Confidence 788999999999998743 336889998888888999999999999999871 11 678999
Q ss_pred CCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 260 KDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 260 ~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
.|++|.||.....+.+.... .....|.+++|++ ++..|+++|.||+|.++.++...
T Consensus 302 qDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 302 QDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCccEEEEecCCCCchhhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 99999999997777765443 4667899999999 89999999999999999986543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-24 Score=220.28 Aligned_cols=268 Identities=10% Similarity=0.114 Sum_probs=206.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceEEeecCCCCCeEEEE
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 163 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L-~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 163 (643)
+.+++++.|+.|++||..+++.+..+..+. .+.+++|+++++.+ ++++.++.|++||..+++....+..+. .+..++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEE
Confidence 568889999999999999998888887654 47789999999876 566788999999999888776665443 356789
Q ss_pred EecCCCEEEEE-eCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC-cEEEEECCCCceeEEeccCCC
Q 006497 164 FCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LVKLWDAKSGRELCSFHGHKN 241 (643)
Q Consensus 164 ~s~d~~~l~s~-s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg-~I~iwD~~~~~~~~~~~~~~~ 241 (643)
|+++++.++++ ..|+.|++||+.+.+.+..+.. ...+.+++|++++++++++..++ .+.+||.++++.+..+. ...
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 99999877655 5689999999998777766652 34578899999999999988775 46778998887665543 234
Q ss_pred cEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEeecCC-------CCeEEEEEecCCCCE-EEEEeCCCcEEEEEC
Q 006497 242 MVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR-------KDVTALAWHPFHEEY-FVSGSLDGSIFHWLV 312 (643)
Q Consensus 242 ~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~-------~~I~~l~~sp~~~~~-l~sgs~dg~I~iwd~ 312 (643)
.+.+++|++++++|++++ .++.|++||+++++.+..+..+. .....++|++ ++++ +++...++.|.+||+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 567899999999886554 68999999999998877665321 1235688998 5555 455556778999999
Q ss_pred CCCcceEEEecccCcceEEEEEcCCCCEEEEE-ECCCeEEEEecCCCC
Q 006497 313 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG-SNDHTTKFWCRNRPG 359 (643)
Q Consensus 313 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sg-s~Dg~V~iWd~~~~~ 359 (643)
++.+....+. +...+++++|++++++|+++ +.++.|++||++...
T Consensus 237 ~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 237 KTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred CCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 7665443332 34579999999999999876 469999999997633
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=243.29 Aligned_cols=283 Identities=20% Similarity=0.356 Sum_probs=229.5
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc----eEEEEcc---CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEEC
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN----FEMILQA---HDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~----~~~~l~~---h~~~V~~l~~s~-~~~~L~sg~~dg~V~iwd~ 143 (643)
+..+++|..+++-..|++++.. .++||.+.... +...++. ....+..|.|.. +.++|||++..|.|.+||+
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred ccccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEec
Confidence 3456777888888888888754 67777654321 2222111 122455678864 4689999999999999999
Q ss_pred CC---CceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEEEC
Q 006497 144 NM---NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSGGK 218 (643)
Q Consensus 144 ~~---~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sgs~ 218 (643)
+. .+.+..+..|+..|.+++|+... ++|++|+.||+|++||++..+...++.+....|++|.|++ .++.++++.+
T Consensus 118 nk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 118 NKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred CccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecC
Confidence 87 56667788999999999999855 6789999999999999999988888988888999999998 5678999999
Q ss_pred CCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCC
Q 006497 219 DSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEE 296 (643)
Q Consensus 219 dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~ 296 (643)
.|.|.+||+|.. ++...+..|.+.|.|+.|+|++.+||+|+.|+.|+|||+.+.+.-.... .....|.+|.|-|....
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999999964 5677888999999999999999999999999999999998654322222 24568999999998788
Q ss_pred EEEEEe--CCCcEEEEECCCCcceEEEecccCcceEEEEEcC-CCCEEEEEECCCeEEEEec
Q 006497 297 YFVSGS--LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 297 ~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-d~~~L~sgs~Dg~V~iWd~ 355 (643)
.|++++ .|-.|+|||++........+..|...++.++|.. |...|.+++.||+|..=.+
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 888876 4778999999999988889999999999999976 4567888888888765443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-26 Score=210.03 Aligned_cols=252 Identities=21% Similarity=0.383 Sum_probs=208.9
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceEEeecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEE
Q 006497 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN---NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 110 l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~---~~~~~~~~~~~~I~~l~~s~--d~~~l~s~s~dg~I~iwd 184 (643)
-..|++.|.++...-.|++|||++.|++|+|+.++.+ +.+.++.+|.++|..++|.. .|.+||+++.||.|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3468889999888888999999999999999998754 46778899999999999986 789999999999999999
Q ss_pred CCCCe--eeeEeeccCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCC---ceeEEeccCCCcEEEEEEcCC---C--
Q 006497 185 FARCQ--EERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLCVKWNQN---G-- 252 (643)
Q Consensus 185 l~~~~--~~~~~~~~~~~V~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~---~~~~~~~~~~~~i~~l~~sp~---g-- 252 (643)
-++++ .......|...|++|+|.|. |-.|++++.||.|.|.++++. ...+....|.-.|++++|.|. |
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~ 166 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL 166 (299)
T ss_pred cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence 87763 33455678999999999885 458999999999999998864 223344678889999999984 4
Q ss_pred ---------CEEEEEECCCcEEEEECCCCe--EEEEeecCCCCeEEEEEecCC---CCEEEEEeCCCcEEEEECCCCcce
Q 006497 253 ---------NWVLTASKDQIIKLYDIRAMK--ELESFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIFHWLVGHETPQ 318 (643)
Q Consensus 253 ---------~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~~~~I~~l~~sp~~---~~~l~sgs~dg~I~iwd~~~~~~~ 318 (643)
+.|++|+.|..|+||+..+++ .-+++.+|...|+.++|.|.. ...|++++.||+|.||..+.+...
T Consensus 167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999999999988753 345588999999999999953 357999999999999988644332
Q ss_pred --EEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCc
Q 006497 319 --VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDT 361 (643)
Q Consensus 319 --~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~ 361 (643)
..++......++.+.|+..|++|+.++.|+.|.+|.-+..++.
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw 291 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKW 291 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcE
Confidence 2344445678999999999999999999999999987665443
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-26 Score=237.04 Aligned_cols=299 Identities=19% Similarity=0.351 Sum_probs=235.0
Q ss_pred hhhHHhheeEEEeeccCcCccccccCchhhhcCccceEeecCCC-------CceeecEEEEeecCCCCCeEEEEEcCCCC
Q 006497 13 TSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPS-------TSFAAKFVHTSLNKNRCSINRVLWTPTGR 85 (643)
Q Consensus 13 ~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~h~~~I~~i~~spdg~ 85 (643)
+.++..+.+||+|+++.....-.........+++. +.|.+... .....+.. ..+-+-+..|++|+.+|+|+
T Consensus 395 F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k-i~y~d~~~q~~~d~~~~~fdka~-~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 395 FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK-IPYEDSTQQIMHDASAGIFDKAL-VSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred eeEecCCCcEEEeecccccccceeecccchhhhhc-CccccCchhhhhhccCCcccccc-hhhcCcccceEEEEECCCcc
Confidence 34567888999999998432211111111112211 11222111 11122222 23334567899999999999
Q ss_pred EEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCC-ceEEeecCCCCCeEE
Q 006497 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN---DNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRD 161 (643)
Q Consensus 86 ~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~---~~~L~sg~~dg~V~iwd~~~~-~~~~~~~~~~~~I~~ 161 (643)
+||+|..-|+++||++.+.+....+..|+..|.|+.|+.. .++||+++.|..|+|||+..+ .++.++.+|...|++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITs 552 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITS 552 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeE
Confidence 9999999999999999999999999999999999999863 478999999999999998654 567788999999999
Q ss_pred EEEecCC--CEEEEEeCCCcEEEEECCCCeeeeEeec-----cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE
Q 006497 162 LSFCRTD--LKFCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC 234 (643)
Q Consensus 162 l~~s~d~--~~l~s~s~dg~I~iwdl~~~~~~~~~~~-----~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~ 234 (643)
+.|.-++ ..+++++.|..|.+--..+......+.. ....+.++++.|..+++++++.|..|+|||+.+++.++
T Consensus 553 vKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 9998877 6789999998876543322212222221 23468899999999999999999999999999999999
Q ss_pred Eecc---CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q 006497 235 SFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311 (643)
Q Consensus 235 ~~~~---~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd 311 (643)
.|++ |++....+...|.|.||++.+.|.++.++|..+++++....+|...|+.+.|.+ +-+.|++.+.||.|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLN-DCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecc-cchhheeecCCceEEEEE
Confidence 9975 556788899999999999999999999999999999999999999999999998 789999999999999999
Q ss_pred CCC
Q 006497 312 VGH 314 (643)
Q Consensus 312 ~~~ 314 (643)
+..
T Consensus 712 lp~ 714 (1080)
T KOG1408|consen 712 LPL 714 (1080)
T ss_pred Cch
Confidence 854
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=225.06 Aligned_cols=282 Identities=20% Similarity=0.321 Sum_probs=237.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC-ceEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF-NFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~-~~~~~l~~h-~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~ 148 (643)
--..|++++|+.+.+.||++-.||.|.||++... -....+.++ +..|.+++|+ ++.+|++.+.+|.|.-||+.+.+.
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 3567999999999999999999999999998763 334455554 5689999999 667899999999999999999999
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee--EeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 149 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 149 ~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~--~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD 226 (643)
+..+....+.|++++.++.+..++.+++||.++.+++..++... .+...++.|.+++|++++..|++|+.||.|++||
T Consensus 103 ~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd 182 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWD 182 (691)
T ss_pred eEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEE
Confidence 99999999999999999999999999999988888887665433 3444568999999999999999999999999999
Q ss_pred CCCCceeEEec-------c-CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEE
Q 006497 227 AKSGRELCSFH-------G-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 227 ~~~~~~~~~~~-------~-~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l 298 (643)
..++..+.... . ...-|+++.|-.+ ..|++|...|+|++||-..+..+..+..|...|.+++... +++.+
T Consensus 183 ~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~-~~d~v 260 (691)
T KOG2048|consen 183 VKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVAD-NEDRV 260 (691)
T ss_pred cCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcC-CCCeE
Confidence 99988776221 1 2334778888755 5699999999999999999999999999999999999998 78999
Q ss_pred EEEeCCCcEEEEECCCCcc---eEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 299 VSGSLDGSIFHWLVGHETP---QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
++++.|+.|..|.....+. .......|...|.+++...+ .|++|+.|..|.+-...+
T Consensus 261 fsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 261 FSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred EEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999999999998876654 33344568888999999865 899999999988866543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=207.38 Aligned_cols=250 Identities=22% Similarity=0.355 Sum_probs=208.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---ceEEEEccCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKY 140 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~s~--~~~~L~sg~~dg~V~i 140 (643)
+.-..|++.|.++...-.|++|||++.|++|+|+..++. +.+.+|.+|.++|..++|.. .|.+||+++.||.|.|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 345679999999999999999999999999999997653 57888999999999999987 7899999999999999
Q ss_pred EECCCCce--EEeecCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCCC---eeeeEeeccCCCeEEEEEcCC---C
Q 006497 141 WQNNMNNV--KANKSAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFARC---QEERSLTGHGWDVKSVDWHPT---K 210 (643)
Q Consensus 141 wd~~~~~~--~~~~~~~~~~I~~l~~s~d~--~~l~s~s~dg~I~iwdl~~~---~~~~~~~~~~~~V~~l~~sp~---~ 210 (643)
|..+.++- ......|...|++++|.|.+ -.|++++.||.|.|++++.. ...+....|.-.|++++|.|. |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99887743 33446899999999998864 66899999999999998654 234556679999999999985 3
Q ss_pred -----------CEEEEEECCCcEEEEECCCC--ceeEEeccCCCcEEEEEEcCCC----CEEEEEECCCcEEEEECCCCe
Q 006497 211 -----------SLLVSGGKDSLVKLWDAKSG--RELCSFHGHKNMVLCVKWNQNG----NWVLTASKDQIIKLYDIRAMK 273 (643)
Q Consensus 211 -----------~~l~sgs~dg~I~iwD~~~~--~~~~~~~~~~~~i~~l~~sp~g----~~l~s~s~dg~I~iwd~~~~~ 273 (643)
+.|++|+.|..|+||+..++ +..+++.+|.+.|+.++|.|.- .+|++++.||+|.||..+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 57999999999999999875 3345588999999999999953 579999999999999876321
Q ss_pred E---EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 274 E---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 274 ~---~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
. ...++.....+..+.|+. .+++|+.++.|+.|.+|.-+...
T Consensus 245 e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlwke~~~G 289 (299)
T KOG1332|consen 245 EPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLWKENVDG 289 (299)
T ss_pred CcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEEEeCCCC
Confidence 1 233344667899999999 89999999999999999765443
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-25 Score=220.85 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=217.8
Q ss_pred CcEEEEeCCCCceEEEEccCC-CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEE
Q 006497 94 GEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~~~~~L~sg~~-dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l 171 (643)
.++.+||+.++.....+++.. ..-.++... ++++++++.. ...|.+|.+.............+.|.+++-++++.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 569999999999998888652 222222222 3356666644 4578999987665555445567889999999999999
Q ss_pred EEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC---------CCceeEEeccCCCc
Q 006497 172 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK---------SGRELCSFHGHKNM 242 (643)
Q Consensus 172 ~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~---------~~~~~~~~~~~~~~ 242 (643)
+.++..+.|++|.+.++..+..+.+|...|+|+.|+.|+.+|++|+.||.|.+|++- +-+.++.|..|.-.
T Consensus 97 ~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls 176 (476)
T KOG0646|consen 97 LAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS 176 (476)
T ss_pred EeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce
Confidence 998899999999999999999999999999999999999999999999999999763 23567888999999
Q ss_pred EEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc----
Q 006497 243 VLCVKWNQN--GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET---- 316 (643)
Q Consensus 243 i~~l~~sp~--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~---- 316 (643)
|+++..... ..+|++++.|.++++||+..+..+.++. ....+.+++++| .+..+++|+.+|.|.+.++....
T Consensus 177 ITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~ 254 (476)
T KOG0646|consen 177 ITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSA 254 (476)
T ss_pred eEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccc
Confidence 999988764 4689999999999999999999988886 678899999999 89999999999999988874332
Q ss_pred -----------ceEEEecccCc--ceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 317 -----------PQVEIHNVHDN--TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 317 -----------~~~~~~~~h~~--~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
.......+|.+ .|+|++++-||.+|++|+.||+|+|||+...
T Consensus 255 ~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 255 GVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred cccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 22344556777 9999999999999999999999999998653
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=218.55 Aligned_cols=283 Identities=13% Similarity=0.168 Sum_probs=233.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--CceEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCce
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~s~~~~-~L~sg~~dg~V~iwd~~~~~~ 148 (643)
.+.|++|.|+|...+|++++.|+.++||.++. ...+..+.-...+|.+.+|.++|. .+++++....++.||+.+.++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 46899999999999999999999999997653 445666666788999999999998 899999999999999988776
Q ss_pred EEee--cCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 149 KANK--SAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225 (643)
Q Consensus 149 ~~~~--~~~-~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iw 225 (643)
.... .++ ...+....+++++++|+..+..|.|.+....+++.+..++ ..+.|..++|+.|++.|++++.+|.|++|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~ 371 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVW 371 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEE
Confidence 5432 222 3467788899999999999999999999999998888887 56689999999999999999999999999
Q ss_pred ECCCCceeEEeccCCC-cEEEEEEcCCCCEEEEEECCCcEEEEECCC------CeEEEEeecCCCCeEEEEEecCCCCEE
Q 006497 226 DAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTASKDQIIKLYDIRA------MKELESFRGHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 226 D~~~~~~~~~~~~~~~-~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~------~~~~~~~~~~~~~I~~l~~sp~~~~~l 298 (643)
|++...+++++....+ .-+++|.+.++.|||+|+..|.|.|||..+ -+.+..+..-...|+++.|++ +..+|
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~-d~qiL 450 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH-DAQIL 450 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-chhhh
Confidence 9999999998864322 246778889999999999999999999754 345667777778899999999 78888
Q ss_pred EEEeC--CCcEEEEECCCCcceEEEe--cccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 299 VSGSL--DGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 299 ~sgs~--dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
+.+|. +..+++-.+-.......+. ...-+.|+|++|+|.+.+||.|.++|.|.+|.+.
T Consensus 451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 87774 4678877764433222221 1223579999999999999999999999999984
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=225.95 Aligned_cols=287 Identities=20% Similarity=0.306 Sum_probs=234.5
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC--EEEEEeCCCcEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN--WMVSGDDGGAIKYW 141 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~--~L~sg~~dg~V~iw 141 (643)
+...+.+|++.|+||...+.|.+|++|+.||+|+||.+.++.+++.+. ..+.|.||+|++..+ .||++..+. +.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence 446678999999999999999999999999999999999999999887 467999999999765 344443333 4443
Q ss_pred ECCCC-------------------------------------ceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CcEE
Q 006497 142 QNNMN-------------------------------------NVKANKSAHKESVRDLSFCRTDLKFCSCSDD---TTVK 181 (643)
Q Consensus 142 d~~~~-------------------------------------~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d---g~I~ 181 (643)
+..-+ .-+.....|...|+.+.|+..|.||++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 31100 0112334577889999999999999987654 5799
Q ss_pred EEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC
Q 006497 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 182 iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 261 (643)
|.++.......-|....+.|.++.|+|...+|++++. ..|+|||+...+.++++.....+|.+++.++.|..|++++.|
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCC
Confidence 9999877666667667788999999999999998876 679999999888888888788899999999999999999999
Q ss_pred CcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC------CC--cceEEEecccCcc----
Q 006497 262 QIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG------HE--TPQVEIHNVHDNT---- 328 (643)
Q Consensus 262 g~I~iwd~~~-~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~------~~--~~~~~~~~~h~~~---- 328 (643)
+.++.||+.- .+..++++.|...+++++|++ .-.+|++|+.||++.|+.-. .. -..++.+.+|...
T Consensus 629 ~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~g 707 (733)
T KOG0650|consen 629 KKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLG 707 (733)
T ss_pred CeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccc
Confidence 9999999974 456788889999999999998 78899999999999988431 11 1224455667655
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 329 VWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 329 V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
|.++.|+|...+|++++.||+|++|.
T Consensus 708 VLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 708 VLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred eEeecccCCCceEEecCCCceEEeeC
Confidence 89999999999999999999999993
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-23 Score=223.58 Aligned_cols=289 Identities=19% Similarity=0.322 Sum_probs=241.3
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQ 142 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~-~L~sg~~dg~V~iwd 142 (643)
+..++.++.+.|+++.=+|--..+|+|..+|+|.|+|++..+.+.+++...+.|+++.|..||+ +|++++..|.+.+||
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 4567888999999999999999999999999999999999999999985569999999999987 566677779999999
Q ss_pred CCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-------------------------------
Q 006497 143 NNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE------------------------------- 190 (643)
Q Consensus 143 ~~~~~~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~------------------------------- 190 (643)
++..++...+. .|.+.|..+.|.+....+++++.|+.+++|=.+++.-
T Consensus 274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 99888776654 7778888888888888888888888777663221000
Q ss_pred -------------------------------e------------------------------------------------
Q 006497 191 -------------------------------E------------------------------------------------ 191 (643)
Q Consensus 191 -------------------------------~------------------------------------------------ 191 (643)
+
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence 0
Q ss_pred ---eEee-----ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe---ccCCCcEEEEEEcCCCCEEEEEEC
Q 006497 192 ---RSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 192 ---~~~~-----~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~---~~~~~~i~~l~~sp~g~~l~s~s~ 260 (643)
..+. .....+++++.+..|++.+.|+..|.|-+|++.+|....++ ..|+..|+.++....++.+++++.
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence 0000 01245788899999999999999999999999999888888 479999999999988899999999
Q ss_pred CCcEEEEECCCCeE-----------------------------------------EEEeecCCCCeEEEEEecCCCCEEE
Q 006497 261 DQIIKLYDIRAMKE-----------------------------------------LESFRGHRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 261 dg~I~iwd~~~~~~-----------------------------------------~~~~~~~~~~I~~l~~sp~~~~~l~ 299 (643)
+|.+++||..+... ++.|.+|...|++++||+ ++++|+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWli 592 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLI 592 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEE
Confidence 99999999875432 223467899999999999 899999
Q ss_pred EEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC-CeEEEEec
Q 006497 300 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCR 355 (643)
Q Consensus 300 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D-g~V~iWd~ 355 (643)
+++.|++|++||+-+...+-.+.. +..++++.|+|+|.+|||...| .-|++|.-
T Consensus 593 sasmD~tIr~wDlpt~~lID~~~v--d~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLIDGLLV--DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred EeecCCcEEEEeccCcceeeeEec--CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 999999999999988887766654 6789999999999999999998 67999964
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=208.23 Aligned_cols=251 Identities=20% Similarity=0.340 Sum_probs=222.0
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
.+++.+.+|.+.|+.++......++.+++.|.+.+||.++++.++..+.+|.+.|++|+|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 35677889999999999887778999999999999999999999999999999999999999999999999999999996
Q ss_pred CC------C----------------------------------CeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 185 FA------R----------------------------------CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 185 l~------~----------------------------------~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
.. . ...+..+++|...|.+..|...++.+++++-|.+-.+
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnl 298 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANL 298 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccccee
Confidence 20 0 0123456788889999999999999999999999999
Q ss_pred EECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCEEEEEeC
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSL 303 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~ 303 (643)
||+++++.+..+.+|+...+.++-+|..+++++.+.|-+.++||++. ...+..|.+|...|+++.|.- ++.+++|+.
T Consensus 299 wDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~--dd~vVSgSD 376 (481)
T KOG0300|consen 299 WDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNT--DDRVVSGSD 376 (481)
T ss_pred eeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEec--CCceeecCC
Confidence 99999999999999999999999999999999999999999999984 345788999999999999985 678999999
Q ss_pred CCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 304 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 304 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
|.+|++||+++-...+.... .+..++.++.+..+.+|+.--++..|++||++..
T Consensus 377 DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred CceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 99999999987765555443 3678999999988889999888999999999753
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=221.13 Aligned_cols=240 Identities=20% Similarity=0.313 Sum_probs=206.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-------
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN------- 144 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~------- 144 (643)
-+.|.|++-+++|.+|+.|+..|.|++|.+.+|+++..+.+|-..|+|+.|+.|+.+|++|+.||.|.+|++.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~ 160 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN 160 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred --CCceEEeecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 145 --MNNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 145 --~~~~~~~~~~~~~~I~~l~~s~d--~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
+-+....+..|.-.|+++..... ..+|++++.|.++++||+..+..+.++. ....+.+++++|.+..+++|+++|
T Consensus 161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAERVVYIGTEEG 239 (476)
T ss_pred CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccccEEEecCCcc
Confidence 23456777899999999988765 3679999999999999999998888776 567899999999999999999999
Q ss_pred cEEEEECCCC----------------ceeEEeccCCC--cEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCC
Q 006497 221 LVKLWDAKSG----------------RELCSFHGHKN--MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 282 (643)
Q Consensus 221 ~I~iwD~~~~----------------~~~~~~~~~~~--~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 282 (643)
.|.+.++... ..+..+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....
T Consensus 240 ~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~k 319 (476)
T KOG0646|consen 240 KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSK 319 (476)
T ss_pred eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhc
Confidence 9999887532 23456677877 89999999999999999999999999999999999988888
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 283 KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 283 ~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
+.|+.+.+.+.....+..-...-.+-+|++
T Consensus 320 gpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 320 GPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred cccceeEeeccccceecccccCccCCchHh
Confidence 999999997753344443344445555555
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-23 Score=221.59 Aligned_cols=281 Identities=22% Similarity=0.331 Sum_probs=231.3
Q ss_pred eEEEEEcCCC--CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee
Q 006497 75 INRVLWTPTG--RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 152 (643)
Q Consensus 75 I~~i~~spdg--~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~ 152 (643)
|++|. +|.. +.|+.|+.+|.+.|||+++++.+.+++++...|+++.=+|-=+.++.|..+|+|.|++++.++.+..+
T Consensus 162 Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 162 ITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred eeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEE
Confidence 77774 4443 67999999999999999999999999999999999999988889999999999999999999999998
Q ss_pred cCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeeeeEee-ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 153 SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 230 (643)
Q Consensus 153 ~~~~~~I~~l~~s~d~~~-l~s~s~dg~I~iwdl~~~~~~~~~~-~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~ 230 (643)
+...+.|++++|.-||+. +++++..|.+.+||++..+....+. .|.+.|..+.|.+....+++++.|+.+++|=.+++
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred EccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 876799999999999976 5666677999999999887776665 57677888888777777777777777666632210
Q ss_pred ce---------------------------------------------------------------------------e--
Q 006497 231 RE---------------------------------------------------------------------------L-- 233 (643)
Q Consensus 231 ~~---------------------------------------------------------------------------~-- 233 (643)
.- +
T Consensus 321 dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~ 400 (910)
T KOG1539|consen 321 DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVE 400 (910)
T ss_pred CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCccee
Confidence 00 0
Q ss_pred ------------------------EE------------ec-----cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 234 ------------------------CS------------FH-----GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272 (643)
Q Consensus 234 ------------------------~~------------~~-----~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 272 (643)
.+ +. .....+++++.+.+|++.+.|...|.|.+|++.++
T Consensus 401 fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG 480 (910)
T KOG1539|consen 401 FAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG 480 (910)
T ss_pred eecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC
Confidence 00 00 01134788999999999999999999999999999
Q ss_pred eEEEEe---ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcce-------------------------------
Q 006497 273 KELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ------------------------------- 318 (643)
Q Consensus 273 ~~~~~~---~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~------------------------------- 318 (643)
-...+| ..|...|+.++... -++.+++++.+|.+++||+.+...+
T Consensus 481 i~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~ 559 (910)
T KOG1539|consen 481 IHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIR 559 (910)
T ss_pred eeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEE
Confidence 998888 48999999999986 6788999999999999998654311
Q ss_pred ---------EEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 319 ---------VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 319 ---------~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.+.+.+|.+.|++++||+||++|++++.|++|++||+-.
T Consensus 560 vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 560 VVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred EEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 112234889999999999999999999999999999854
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-26 Score=242.68 Aligned_cols=256 Identities=24% Similarity=0.481 Sum_probs=228.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEE
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 164 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 164 (643)
.+++....+-.++|||.+. +-.|...|.|+..-..++.+++|+.|..+-+|.+..-..+..+.+|...|.+|.|
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f 78 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTF 78 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeec
Confidence 3455555666788888553 3468888889888777889999999999999998877777778999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEE
Q 006497 165 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 165 s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~ 244 (643)
+.+..+|++++.+|+|++||+++.+.++++.+|...+.++.|+|-+.+++.++.|+.+++||++...+.+.+.+|...+.
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~ 158 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD 158 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc
Q 006497 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 324 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 324 (643)
++.|+|+|++++.+++|..++|||+..++.+.+|..|...+..+.|++ .+.++++|+.|++|++||+++...+.....
T Consensus 159 ~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~- 236 (825)
T KOG0267|consen 159 VLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKP- 236 (825)
T ss_pred EEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCC-
Confidence 999999999999999999999999999999999999999999999999 889999999999999999976554444433
Q ss_pred cCcceEEEEEcCCCCEEEEEECCC
Q 006497 325 HDNTVWDLAWHPIGYLLCSGSNDH 348 (643)
Q Consensus 325 h~~~V~~l~~s~d~~~L~sgs~Dg 348 (643)
....|.+++|+++++.+++|..+.
T Consensus 237 ~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 237 ETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred ccCCceeeeecCCceeeecCchhh
Confidence 366899999999999888887654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.1e-25 Score=221.50 Aligned_cols=258 Identities=17% Similarity=0.306 Sum_probs=203.3
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-----EEeecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRTDLKFCSCSDDTT 179 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~-----~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~ 179 (643)
.....++.|...|.++++.+.|.+|++|+.|-+|++||+..... ..........|+++.|++.+..|++.+....
T Consensus 158 shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcc
Confidence 34566788999999999999999999999999999999875421 1222345568999999999999999999999
Q ss_pred EEEEECCCCeeeeE------------eeccCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCce-eEEec-----cCC
Q 006497 180 VKVWDFARCQEERS------------LTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRE-LCSFH-----GHK 240 (643)
Q Consensus 180 I~iwdl~~~~~~~~------------~~~~~~~V~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~~-~~~~~-----~~~ 240 (643)
.+|+|-...+.... .++|...++|.+|+|+.+ .+++++.||+++|||+++.+. +..++ +..
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R 317 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR 317 (641)
T ss_pred eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence 99999655444332 347888999999999764 789999999999999986543 33332 234
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE---EEEeecCCC--CeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 006497 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 241 ~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~--~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
-.+++++|++|+++||+|+.||.|.+||.++... ...-+.|.. .|+||+||. ++++|++-+.|+++++||++..
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc-ccchhhhccCCCceeeeecccc
Confidence 5689999999999999999999999999865432 233346666 899999999 8999999999999999999987
Q ss_pred cceEEEecc--cCcceEEEEEcCCCCEEEEEEC------CCeEEEEecCCCCCccc
Q 006497 316 TPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRNRPGDTAR 363 (643)
Q Consensus 316 ~~~~~~~~~--h~~~V~~l~~s~d~~~L~sgs~------Dg~V~iWd~~~~~~~~~ 363 (643)
+..+....+ ....-+.++|||+.++|++|.. .|++.+||........+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 765554332 2335678999999999999864 57899998765444433
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-24 Score=202.39 Aligned_cols=286 Identities=19% Similarity=0.324 Sum_probs=221.7
Q ss_pred ecCCCCCeEEEEEcC-CCCEEEEEECCCcEEEEeCCCCc------e----EE-----EEccCCCCEEEEEEcC-CCCEEE
Q 006497 68 LNKNRCSINRVLWTP-TGRRLITGSQSGEFTLWNGQSFN------F----EM-----ILQAHDHAIRSMVWSH-NDNWMV 130 (643)
Q Consensus 68 l~~h~~~I~~i~~sp-dg~~L~tgs~dg~I~iwd~~~~~------~----~~-----~l~~h~~~V~~l~~s~-~~~~L~ 130 (643)
...|.+.|+++.+.+ .|+++++|+.||.|.|||+++.. + +. .-.+|...|.++.|-| |...+.
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFt 118 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFT 118 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceee
Confidence 456899999999987 47899999999999999987533 0 11 1235778899999988 556888
Q ss_pred EEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEc
Q 006497 131 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD---LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 207 (643)
Q Consensus 131 sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~---~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~s 207 (643)
+++.|.+++|||.++.+....++ .++.|.+-++++-. .+||++..|-.|++.|+.++....++.+|.+.|.++.|+
T Consensus 119 ssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 119 SSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred cccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999999988777664 46778888887743 467888889999999999999999999999999999999
Q ss_pred CCCC-EEEEEECCCcEEEEECCCC-ceeEEec--------------cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 208 PTKS-LLVSGGKDSLVKLWDAKSG-RELCSFH--------------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 208 p~~~-~l~sgs~dg~I~iwD~~~~-~~~~~~~--------------~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
|... .|++|+.||.|++||++.. .+...+. .|.+.|..++|..++.++++++.|..+++|+..+
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 9877 5788999999999999854 3333332 4667899999999999999999999999999988
Q ss_pred CeEE-EEee--cCCCCe-EEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC
Q 006497 272 MKEL-ESFR--GHRKDV-TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 272 ~~~~-~~~~--~~~~~I-~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
++.. +.+- .|...+ ..+.....+...++---.++.+.++++-... .+..+..|-..|.+.++-++=..+.++..|
T Consensus 278 G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs-~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 278 GRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS-FVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred CcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCce-EEEeeecccceeeEEeecCchhhhhccccC
Confidence 7642 2221 111110 1111111134455555566889999885554 445555688889999999998889999999
Q ss_pred CeEEEEec
Q 006497 348 HTTKFWCR 355 (643)
Q Consensus 348 g~V~iWd~ 355 (643)
+.|..|..
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99999976
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-25 Score=209.00 Aligned_cols=249 Identities=21% Similarity=0.370 Sum_probs=211.6
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc--cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ--AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
+.++|-.|.+.|+++.|+|....|++++.|++|++||...-...+.++ .....|.++.|+|.|++|++|...-++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 557888999999999999999999999999999999987643322222 245689999999999999999999999999
Q ss_pred ECCCCceEEee---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec-c-CCCeEEEEEcCCCCEEEEE
Q 006497 142 QNNMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-H-GWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 142 d~~~~~~~~~~---~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~-~-~~~V~~l~~sp~~~~l~sg 216 (643)
|+++.++...- ..|.+.|+++.+++.+++.++++.||.|+|||-.+.+++.++.. | ...|.+..|..++++|++.
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSS 323 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeec
Confidence 99998765543 47899999999999999999999999999999988888887753 4 3579999999999999999
Q ss_pred ECCCcEEEEECCCCceeEEeccCC-----CcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEee-cCCCCeEEEE
Q 006497 217 GKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR-GHRKDVTALA 289 (643)
Q Consensus 217 s~dg~I~iwD~~~~~~~~~~~~~~-----~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~ 289 (643)
+.|..+++|.+.+++.+..+.+.. .--+...|+....|++.-. ..+.++-||.|+...+..+. +|.+.+..+.
T Consensus 324 G~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~ 403 (430)
T KOG0640|consen 324 GKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIV 403 (430)
T ss_pred CCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEE
Confidence 999999999999999999886532 1234556777778877655 35689999999987766554 7999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECC
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
-+| .+..|++|+.|-++++|--+
T Consensus 404 HSP-~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 404 HSP-VEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred eCC-CCCceeeecccceeeeeeec
Confidence 999 88999999999999999653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-23 Score=206.23 Aligned_cols=278 Identities=19% Similarity=0.357 Sum_probs=227.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEE---EccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI---LQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~---l~~h-~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
.-+..|..++|+|.+..|++....+.+..|+.+.+.+.+. ++.+ ...|.|++|.++++ +++|+.+|.|.||+..+
T Consensus 198 ~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~ 276 (626)
T KOG2106|consen 198 TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGT 276 (626)
T ss_pred eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC
Confidence 3456788999999887777777789999999988766554 3332 36799999998876 78999999999999988
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeee----------------------------------
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE---------------------------------- 191 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~---------------------------------- 191 (643)
.+..+....|.+.|.+|+...+|.+| +++.|..|..||-+- +.+
T Consensus 277 ~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y-~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 277 NRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNY-RKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred ceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccc-cccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 88777777999999999999998755 599999999998311 110
Q ss_pred -------eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcE
Q 006497 192 -------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 264 (643)
Q Consensus 192 -------~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I 264 (643)
....+|.+....++.+++.+.+++++.|+.+++|+ ..+.+.+.. ....+.|+.|+|.| .|++|+..|..
T Consensus 355 t~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w 430 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRW 430 (626)
T ss_pred eecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceE
Confidence 11235777888999999999999999999999999 444444433 45678999999999 99999999999
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEe-cccCcceEEEEEcCCCCEEEE
Q 006497 265 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 265 ~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~d~~~L~s 343 (643)
.+.|.++...+..-. ....+++++|++ ++.+||.|+.|+.|+||.++......... ..+...|+.+.|+.|+++|.+
T Consensus 431 ~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~ 508 (626)
T KOG2106|consen 431 FVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVS 508 (626)
T ss_pred EEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEe
Confidence 999999855554444 489999999999 89999999999999999997766555433 345578999999999999999
Q ss_pred EECCCeEEEEecC
Q 006497 344 GSNDHTTKFWCRN 356 (643)
Q Consensus 344 gs~Dg~V~iWd~~ 356 (643)
-+.|-.|.+|+-.
T Consensus 509 ~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 509 NSGDYEILYWKPS 521 (626)
T ss_pred ccCceEEEEEccc
Confidence 9999999999543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=223.96 Aligned_cols=276 Identities=21% Similarity=0.375 Sum_probs=214.8
Q ss_pred CCEEEEEECCCcEEEEeCCCCceE------EEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe--ecCC
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFE------MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--KSAH 155 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~------~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~--~~~~ 155 (643)
...|+.+.+||.|.++|.+..... +....|...|..+.|.+....|++++.|.++++||+++.++... +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 357899999999999997765433 55668999999999999778999999999999999999988776 7899
Q ss_pred CCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCee---------------------------eeEeeccCCCeEE---E
Q 006497 156 KESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE---------------------------ERSLTGHGWDVKS---V 204 (643)
Q Consensus 156 ~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~---------------------------~~~~~~~~~~V~~---l 204 (643)
...|.+++|.+++ ..|++|+.||.|.|||++-... +...+.+...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 9999999999976 5689999999999999853220 0111223334444 5
Q ss_pred EEcCCCCEEEEEEC-CCcEEEEECCCCceeEEe--------ccC---CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 205 DWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSF--------HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272 (643)
Q Consensus 205 ~~sp~~~~l~sgs~-dg~I~iwD~~~~~~~~~~--------~~~---~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 272 (643)
.+..|+..||+++. |+.|+|||++........ ..+ .-.+.++.....|.+|++.+.|+.|++||+.+.
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEecccc
Confidence 55568889999888 999999999976543322 112 235788888888999999999999999999864
Q ss_pred eE--EEEeecCCCC--eEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC-CCEEEEEECC
Q 006497 273 KE--LESFRGHRKD--VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSND 347 (643)
Q Consensus 273 ~~--~~~~~~~~~~--I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~D 347 (643)
.. +..+.++... -..-..++ ++.+|++|+.|...++|.+.+......++.+|.-.|++++|.+. -.-++++++|
T Consensus 304 s~sP~~~~sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD 382 (720)
T KOG0321|consen 304 SISPVAEFSGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDD 382 (720)
T ss_pred CcCchhhccCcccceeeeeeecCC-CCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccC
Confidence 33 4444433322 12224566 78999999999999999999988888888899999999999885 3457778999
Q ss_pred CeEEEEecCCCCC
Q 006497 348 HTTKFWCRNRPGD 360 (643)
Q Consensus 348 g~V~iWd~~~~~~ 360 (643)
..++||++.....
T Consensus 383 ~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 383 FRVKIWRLSNGLE 395 (720)
T ss_pred cceEEEeccCchh
Confidence 9999999955433
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=204.94 Aligned_cols=283 Identities=15% Similarity=0.285 Sum_probs=217.8
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecC
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 154 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~ 154 (643)
-.|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|++||+.|++++.|..|.+||+..+..+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999777764
Q ss_pred CCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeec----cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 155 HKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTG----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229 (643)
Q Consensus 155 ~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~----~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 229 (643)
....|..+.|++.. +.++++-.+..-.+.++........-.. ....-.+..|++.|++|++|...|.+.+||..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 67889999999854 3344333444455555543211111111 111223446888999999999999999999999
Q ss_pred CceeEEeccCC-CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE---------EEee--cCCCCeEEEEEecCCCCE
Q 006497 230 GRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---------ESFR--GHRKDVTALAWHPFHEEY 297 (643)
Q Consensus 230 ~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---------~~~~--~~~~~I~~l~~sp~~~~~ 297 (643)
.+++..++... ..|..|.++..|++|++-+.|..||.|+++..... ..+. ..+..-.+++|+. ++.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-CccE
Confidence 99998887655 77999999999999999999999999998632111 1111 1223345788887 6666
Q ss_pred EEEEe-CCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 298 FVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 298 l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
+++++ ....++||....+.....+.........++.|++-...|++. ..|.|++|.......
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 66665 446799999876665544444333678899999998888887 789999999876544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=234.84 Aligned_cols=247 Identities=19% Similarity=0.299 Sum_probs=183.7
Q ss_pred eEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecC----------CCCCeEEEEEec-----CCC
Q 006497 106 FEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA----------HKESVRDLSFCR-----TDL 169 (643)
Q Consensus 106 ~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~----------~~~~I~~l~~s~-----d~~ 169 (643)
..+.+. .|.+.|+++.|++||+|||+|+.|+.|+||.+...+....-.. ....+..+..+. ...
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 344556 8999999999999999999999999999998765333111100 001111111111 000
Q ss_pred EEEEEeCCCcEEEEECC----CCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEE
Q 006497 170 KFCSCSDDTTVKVWDFA----RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 245 (643)
Q Consensus 170 ~l~s~s~dg~I~iwdl~----~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~ 245 (643)
..-.+..... .+.+.. ..+.+..+.+|.+.|.+|.|+ .+++|++++.|.+|+||++...++++.|. |.+.|+|
T Consensus 338 ~~~~~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 338 SSRKGSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred ccccccCCcc-ccCCCccccccccchhhhhccchhheecccc-cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 0111111222 222221 235677889999999999999 45789999999999999999999999997 9999999
Q ss_pred EEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEec-
Q 006497 246 VKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN- 323 (643)
Q Consensus 246 l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 323 (643)
|+|+| |.+||++|+.|+.|+||++...+.+.-.. -..-|++++|.| ++++.++|+.+|.+++|+....+.......
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~P-dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSP-DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEecc-CCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 99999 88999999999999999998777665555 448899999999 799999999999999999977655433221
Q ss_pred -------ccCcceEEEEEcCC-CCEEEEEECCCeEEEEecCCC
Q 006497 324 -------VHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 324 -------~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
.|. .|+.+.|.+. -..|++.++|..|+|+|....
T Consensus 493 ~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~ 534 (712)
T KOG0283|consen 493 LHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK 534 (712)
T ss_pred eccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch
Confidence 133 7999999974 345777789999999998543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-24 Score=201.89 Aligned_cols=264 Identities=19% Similarity=0.336 Sum_probs=208.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
...|.+|.|++.++.|++++.||++++||+...++...+ .|..++.+++|.. ...+++++.||.|+.+|++++... .
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-Q 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-e
Confidence 678999999998899999999999999999988666554 5889999999985 567999999999999999887554 4
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 273 (643)
+..|...|+||.++.....+++|+-|++|++||.+....+..+.. ...|.|+... ++.|++|+.|..|.+||+++.+
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEccccc
Confidence 555999999999999889999999999999999998656655553 3478888775 7789999999999999999877
Q ss_pred EEEEee--cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc---eEEEecccC---------cceEEEEEcCCCC
Q 006497 274 ELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP---QVEIHNVHD---------NTVWDLAWHPIGY 339 (643)
Q Consensus 274 ~~~~~~--~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~---------~~V~~l~~s~d~~ 339 (643)
.....+ ..+-.+.|+++.| ++.-+++++.||+|.+=.++.... ....+..|. .+|++|+|++-..
T Consensus 167 ~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~ 245 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG 245 (323)
T ss_pred chhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence 654332 3445689999999 777788889999998877765511 111222332 2699999999989
Q ss_pred EEEEEECCCeEEEEecCCCCCccccccccCCCccccceeeEeeecCCCCCCC
Q 006497 340 LLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPL 391 (643)
Q Consensus 340 ~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (643)
.|+||+.||.|.+||+...+ ...+.+.|.......+++.+|..++
T Consensus 246 tfaTgGsDG~V~~Wd~~~rK-------rl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 246 TFATGGSDGIVNIWDLFNRK-------RLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred eEEecCCCceEEEccCcchh-------hhhhccCCCCceEEEEeccCCCeEE
Confidence 99999999999999985422 2233445555566777777665544
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-25 Score=220.76 Aligned_cols=237 Identities=19% Similarity=0.316 Sum_probs=208.8
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc--eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 149 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~ 149 (643)
...|+++.+.+||+.|++|++-.+|.|||+..-. ....+....-.+++++.++|.+..++++.||.|.|||+.+..++
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~V 544 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLV 544 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceee
Confidence 4468999999999999999999999999987543 33334444456788999999999999999999999999999999
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 150 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229 (643)
Q Consensus 150 ~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 229 (643)
..+.+|.+.+.||.++.||..|-+|+-|++|+.||++++..+.... ..+.|.++.++|++.+|++|-+++.+.|.....
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk 623 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK 623 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC
Confidence 9999999999999999999999999999999999999887665544 567899999999999999999999999988764
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 006497 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 230 ~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~i 309 (643)
...+.+..|++.|.++.|.+.|+++++.+.|+.+..|..--+..+...+ ..+.|.++.++. ++++|++|+.|....+
T Consensus 624 -p~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 624 -PEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATV 700 (705)
T ss_pred -ccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEE
Confidence 4456677799999999999999999999999999999998888887766 567899999998 8999999999998888
Q ss_pred EEC
Q 006497 310 WLV 312 (643)
Q Consensus 310 wd~ 312 (643)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 875
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=216.82 Aligned_cols=244 Identities=22% Similarity=0.400 Sum_probs=214.3
Q ss_pred eEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 106 FEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 106 ~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
.+..+.+|.+.|.|++=+++. ..+++|+.||.|+|||+...++...+..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 455678999999999999876 7899999999999999999999999999999999999976 6789999999999999
Q ss_pred CCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCC-CEEEEEECCCc
Q 006497 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQI 263 (643)
Q Consensus 185 l~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~ 263 (643)
++.. .+.++.+ ...+..|+-+..++.++++++ .|.|||.+....+.++.-....|.++.|+|.. .+|++|..|+.
T Consensus 136 ~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrs 211 (433)
T KOG0268|consen 136 IDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRS 211 (433)
T ss_pred ccCC-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCc
Confidence 8763 5555553 446777877777788888875 49999999888999988778889999999955 56777779999
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEE
Q 006497 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~s 343 (643)
|.|||++....++.+. ....-+.|+|+| +...|+++++|..++.||++...........|.+.|.++.|+|.|+-+++
T Consensus 212 IvLyD~R~~~Pl~KVi-~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs 289 (433)
T KOG0268|consen 212 IVLYDLRQASPLKKVI-LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS 289 (433)
T ss_pred eEEEecccCCccceee-eeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc
Confidence 9999999998887765 445568899999 88999999999999999999988888899999999999999999999999
Q ss_pred EECCCeEEEEecCC
Q 006497 344 GSNDHTTKFWCRNR 357 (643)
Q Consensus 344 gs~Dg~V~iWd~~~ 357 (643)
|+.|.+|+||.++.
T Consensus 290 gsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 290 GSYDKSIRIFPVNH 303 (433)
T ss_pred ccccceEEEeecCC
Confidence 99999999999865
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=223.47 Aligned_cols=237 Identities=17% Similarity=0.315 Sum_probs=208.6
Q ss_pred EeecCCCCCeEE-EEEcC-CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 66 TSLNKNRCSINR-VLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 66 ~~l~~h~~~I~~-i~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
+.+.+|.+-|.+ ++|-+ ++-+|++|+.|..|.+|.....+...++++|...|.|+....++. |++|+.|.++++|..
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~ 129 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI 129 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc
Confidence 567788888888 88885 445699999999999999999999999999999999999877766 999999999999964
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
+++...+.+|...|++++..+++ .+++|+.|.+|++|.- ++.++++.+|.+.|+.+++-++ ..|++++.||.|+
T Consensus 130 --~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir 203 (745)
T KOG0301|consen 130 --GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIR 203 (745)
T ss_pred --hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEE
Confidence 45666689999999999999887 8999999999999985 6788999999999999999865 4588999999999
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeC
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 303 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~ 303 (643)
+||+ +++++.+..+|.+.|.+++...++..|+++++|++++||+.. ++...+......|+++.+-. +++ |++|+.
T Consensus 204 ~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-NgD-Ivvg~S 278 (745)
T KOG0301|consen 204 LWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NGD-IVVGGS 278 (745)
T ss_pred EEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CCC-EEEecc
Confidence 9999 689999999999999999988888899999999999999976 77777876777899998886 444 667777
Q ss_pred CCcEEEEECCC
Q 006497 304 DGSIFHWLVGH 314 (643)
Q Consensus 304 dg~I~iwd~~~ 314 (643)
||.|+||..+.
T Consensus 279 DG~VrVfT~~k 289 (745)
T KOG0301|consen 279 DGRVRVFTVDK 289 (745)
T ss_pred CceEEEEEecc
Confidence 99999998764
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=225.71 Aligned_cols=244 Identities=18% Similarity=0.347 Sum_probs=209.2
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 006497 111 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189 (643)
Q Consensus 111 ~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~-~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~ 189 (643)
..|....+.|+|.++|++|++++.||.|++|+.... +.-..+..+...|.+++. +.++|++++.+++|.+|.+.+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 368888999999999999999999999999987665 333344447778888776 45589999999999999998888
Q ss_pred eeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 190 ~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
.-..+....-.+++++|+-+|+++|.|++|-.|++.++.+......+++|+..|.+|.|+|++++||+.+.||.|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 77777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeecC--------CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCc-ceEEEEEcCCCCE
Q 006497 270 RAMKELESFRGH--------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN-TVWDLAWHPIGYL 340 (643)
Q Consensus 270 ~~~~~~~~~~~~--------~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~d~~~ 340 (643)
.++.+..++.+- ...+..++|+|+ +..|+....|+.|++|+.........+...+.. .+.++.|+|.|++
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998876665421 345678999994 455555566889999999888877776655443 4999999999999
Q ss_pred EEEEECCCeEEEEecCC
Q 006497 341 LCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 341 L~sgs~Dg~V~iWd~~~ 357 (643)
||+++.||.|.|||++.
T Consensus 247 iAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDT 263 (933)
T ss_pred EeeeccCCcEEEEeccc
Confidence 99999999999999985
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-26 Score=237.48 Aligned_cols=237 Identities=22% Similarity=0.405 Sum_probs=222.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN 146 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~ 146 (643)
.+..|...|.|+..-..++.+++|+.|..+-||.+..-..+..+.+|+..|.+|.|+.+..+|++|..+|+|++||++..
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 44568888999988778899999999999999998888888889999999999999999999999999999999999999
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 147 ~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD 226 (643)
+.+..+.+|...+..+.|+|-+.+++.++.|+.+++||++...+...+.+|...|.++.|+|+|++++.+++|.+++|||
T Consensus 103 k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d 182 (825)
T KOG0267|consen 103 KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWD 182 (825)
T ss_pred hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeec
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 227 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
+..++.+..|+.|...+.++.|++..-+++.|+.|++|++||+++.+.+...+.....|.+++|++ ++..+++|..+
T Consensus 183 ~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q~ 259 (825)
T KOG0267|consen 183 LTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP-DGKIVLSGEQI 259 (825)
T ss_pred ccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC-CceeeecCchh
Confidence 999999999999999999999999999999999999999999999999999988899999999999 77777777654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=199.01 Aligned_cols=241 Identities=20% Similarity=0.391 Sum_probs=192.6
Q ss_pred cCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-ceE-EeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 006497 112 AHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN-NVK-ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188 (643)
Q Consensus 112 ~h~~~V~~l~~s~-~~~~L~sg~~dg~V~iwd~~~~-~~~-~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~ 188 (643)
.-++.|.+|+|+| ...+|++++.|++||+|+++.. ..+ +....|.+.|.+++|+.|+..+++++.|+.+++|||.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 4578899999999 4566779999999999998873 222 334678999999999999999999999999999999998
Q ss_pred eeeeEeeccCCCeEEEEEcCCCC--EEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEE
Q 006497 189 QEERSLTGHGWDVKSVDWHPTKS--LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 266 (643)
Q Consensus 189 ~~~~~~~~~~~~V~~l~~sp~~~--~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 266 (643)
.+..+..|...|.++.|-+... .|++|+-|.+|++||.|+...+.++. ..+.+.++..- ..+++++..++.|.+
T Consensus 105 -Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~v 180 (347)
T KOG0647|consen 105 -QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAV 180 (347)
T ss_pred -CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEE
Confidence 5566777999999999987665 89999999999999999998888876 45567776653 457888999999999
Q ss_pred EECCCCeEE-EEee-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC--cceEEEecccC---------cceEEEE
Q 006497 267 YDIRAMKEL-ESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--TPQVEIHNVHD---------NTVWDLA 333 (643)
Q Consensus 267 wd~~~~~~~-~~~~-~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~h~---------~~V~~l~ 333 (643)
|++++.... +... ..+-.+.||++.. +.+..+.|+.+|++.|..++.. +.-.. +..|. ..|++|+
T Consensus 181 ynL~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFt-FkCHR~~~~~~~~VYaVNsi~ 258 (347)
T KOG0647|consen 181 YNLENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFT-FKCHRSTNSVNDDVYAVNSIA 258 (347)
T ss_pred EEcCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCcee-EEEeccCCCCCCceEEecceE
Confidence 999765432 2221 2334688999888 5666699999999999988765 22222 22333 2588999
Q ss_pred EcCCCCEEEEEECCCeEEEEecCCC
Q 006497 334 WHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 334 ~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
|+|.-..|+|++.||++.+||-+..
T Consensus 259 FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 259 FHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eecccceEEEecCCceEEEecchhh
Confidence 9999899999999999999997653
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-23 Score=196.98 Aligned_cols=245 Identities=18% Similarity=0.399 Sum_probs=195.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC----CCceEEEEccCCCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ----SFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKY 140 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~----~~~~~~~l~~h~~~V~~l~~s~--~~~~L~sg~~dg~V~i 140 (643)
...+|++-|.|+.|...|+++|+|+.|++|+|||.+ +..+....+.|++.|..|.|.+ -|+.+|+++.|++|.|
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 346899999999999999999999999999999953 3456777889999999999975 4899999999999999
Q ss_pred EECCC---------CceEEeecCCCCCeEEEEEecC--CCEEEEEeCCCcEEEEECCCCee------eeEee-------c
Q 006497 141 WQNNM---------NNVKANKSAHKESVRDLSFCRT--DLKFCSCSDDTTVKVWDFARCQE------ERSLT-------G 196 (643)
Q Consensus 141 wd~~~---------~~~~~~~~~~~~~I~~l~~s~d--~~~l~s~s~dg~I~iwdl~~~~~------~~~~~-------~ 196 (643)
|.-.. .....++......|+++.|.+. |-.||+++.||+|+||+.-+--. ...+. .
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~ 167 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK 167 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc
Confidence 97521 1234456677889999999984 67799999999999998743222 22222 3
Q ss_pred cCCCeEEEEEcCC---CCEEEEEECC-----CcEEEEECCCC----ceeEEeccCCCcEEEEEEcCC----CCEEEEEEC
Q 006497 197 HGWDVKSVDWHPT---KSLLVSGGKD-----SLVKLWDAKSG----RELCSFHGHKNMVLCVKWNQN----GNWVLTASK 260 (643)
Q Consensus 197 ~~~~V~~l~~sp~---~~~l~sgs~d-----g~I~iwD~~~~----~~~~~~~~~~~~i~~l~~sp~----g~~l~s~s~ 260 (643)
+.....|+.|++. ..+|++|+.+ +.++||....+ ..+.++.+|...|+.|+|.|+ -.+|++++.
T Consensus 168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k 247 (361)
T KOG2445|consen 168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK 247 (361)
T ss_pred ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence 5566789999863 3478888766 47888876543 345567789999999999994 357999999
Q ss_pred CCcEEEEECCC--------------------CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 261 DQIIKLYDIRA--------------------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 261 dg~I~iwd~~~--------------------~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
|| |+||.++. -+.+..+..|++.|..+.|+- .+..|++.+.||.|++|...
T Consensus 248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNm-tGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNM-TGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEee-eeeEEeecCCCceeeehhhh
Confidence 99 99999873 123566788999999999998 79999999999999999753
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-22 Score=201.01 Aligned_cols=233 Identities=19% Similarity=0.375 Sum_probs=189.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV--- 148 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~--- 148 (643)
+.-|.|++|.++|. ++||.++|.|.||+..+.+..+....|++.|.+++...+|.+ ++|+.|..|..||-+-.+.
T Consensus 246 kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~~y~k~r~~ 323 (626)
T KOG2106|consen 246 KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWDDNYRKLRET 323 (626)
T ss_pred ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccE-eecCccceEEeccccccccccc
Confidence 46799999999997 899999999999999888888877799999999999988865 5599999999998321110
Q ss_pred -------------------------------------EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeee
Q 006497 149 -------------------------------------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191 (643)
Q Consensus 149 -------------------------------------~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~ 191 (643)
.....+|.+....++.+++.+.+++++.|+.+++|+ ..+.+
T Consensus 324 elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~ 401 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE 401 (626)
T ss_pred cCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence 011135777888899999999999999999999999 33343
Q ss_pred eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
.+.. ..+.+.|++|+|.+ .|++|+..|...+.|.++...+..-. ....+++++|+++|.+||+|+.|+.|+||.+..
T Consensus 402 wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~ 478 (626)
T KOG2106|consen 402 WTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA 478 (626)
T ss_pred EEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence 3333 45688999999999 99999999999999999855554444 488999999999999999999999999999864
Q ss_pred Ce-EEEEe-ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 272 MK-ELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 272 ~~-~~~~~-~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
.. ..... +.+...|+.+.|+. ++++|.+-+.|-.|..|.-
T Consensus 479 ~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 479 NGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred CCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEcc
Confidence 33 32222 23448899999999 8899999999999999943
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=196.39 Aligned_cols=246 Identities=19% Similarity=0.423 Sum_probs=195.7
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----ceEEeecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEE
Q 006497 111 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 111 ~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~----~~~~~~~~~~~~I~~l~~s~--d~~~l~s~s~dg~I~iwd 184 (643)
.+|.+-|+|+.|...|+++|+|+.|++|+|||.+.. .+....+.|.+.|..+.|.+ -|+.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 468889999999999999999999999999996433 45666789999999999975 578899999999999997
Q ss_pred CC---------CCeeeeEeeccCCCeEEEEEcCC--CCEEEEEECCCcEEEEECCCCce------eEEec-------cCC
Q 006497 185 FA---------RCQEERSLTGHGWDVKSVDWHPT--KSLLVSGGKDSLVKLWDAKSGRE------LCSFH-------GHK 240 (643)
Q Consensus 185 l~---------~~~~~~~~~~~~~~V~~l~~sp~--~~~l~sgs~dg~I~iwD~~~~~~------~~~~~-------~~~ 240 (643)
-. +.....++......|++|.|.|. |-.|++++.||.||||+.-.--. ...+. .+.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~ 169 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNK 169 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccccc
Confidence 51 12234456667789999999985 56899999999999998754322 22222 355
Q ss_pred CcEEEEEEcCC---CCEEEEEECC-----CcEEEEECCC----CeEEEEeecCCCCeEEEEEecCCC---CEEEEEeCCC
Q 006497 241 NMVLCVKWNQN---GNWVLTASKD-----QIIKLYDIRA----MKELESFRGHRKDVTALAWHPFHE---EYFVSGSLDG 305 (643)
Q Consensus 241 ~~i~~l~~sp~---g~~l~s~s~d-----g~I~iwd~~~----~~~~~~~~~~~~~I~~l~~sp~~~---~~l~sgs~dg 305 (643)
....|+.|++. ..+|++|+.+ +.++||.... ...+.++..|...|++|+|.|.-+ .+||+++.||
T Consensus 170 ~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg 249 (361)
T KOG2445|consen 170 QPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG 249 (361)
T ss_pred CcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc
Confidence 67889999973 4678888866 4788887643 345677789999999999999544 4789999999
Q ss_pred cEEEEECCCCc-------------------ceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 306 SIFHWLVGHET-------------------PQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 306 ~I~iwd~~~~~-------------------~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
|+||.++... ..+..+..|...|+.+.|+-.|..|++.+.||+||+|+.+.
T Consensus 250 -v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 250 -VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred -EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 9999986311 12334567999999999999999999999999999998754
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=229.12 Aligned_cols=244 Identities=26% Similarity=0.495 Sum_probs=205.1
Q ss_pred CeEEEEEcC-CCCEEEEEECCCcEEEEeCCC---CceEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce
Q 006497 74 SINRVLWTP-TGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 74 ~I~~i~~sp-dg~~L~tgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~~~~ 148 (643)
.+..|+|+. +.++|||++.+|.|.+||+.. .+.+..+..|+..|++++|+.. -++|++|+.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 466778874 457899999999999999987 5667788999999999999875 47899999999999999999998
Q ss_pred EEeecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC-eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 149 KANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 149 ~~~~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~iwdl~~~-~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD 226 (643)
...+....+.|++++|++ .+.+|+++.+.|.|.+||++.. +....+.+|.+.|.|+.|+|+..+||+|+.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 888888999999999998 4578999999999999999764 45677889999999999999999999999999999999
Q ss_pred CCCCce--eEEeccCCCcEEEEEEcCCCC-EEEEEE--CCCcEEEEECCCC-eEEEEeecCCCCeEEEEEecCCCCEEEE
Q 006497 227 AKSGRE--LCSFHGHKNMVLCVKWNQNGN-WVLTAS--KDQIIKLYDIRAM-KELESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 227 ~~~~~~--~~~~~~~~~~i~~l~~sp~g~-~l~s~s--~dg~I~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
..+.+. +.++. ....|.+|+|-|+.. .|++++ .|-.|+|||++.- -...++..|...++.++|...+...|.+
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986543 33333 456799999999665 466655 5778999999754 3467888999999999998766788999
Q ss_pred EeCCCcEEEEECCCCcce
Q 006497 301 GSLDGSIFHWLVGHETPQ 318 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~ 318 (643)
++.||+|..-.+++....
T Consensus 328 ~sKD~tv~qh~~knat~p 345 (839)
T KOG0269|consen 328 CSKDGTVLQHLFKNATTP 345 (839)
T ss_pred ecCccHHHHhhhhcccCh
Confidence 999999877666555443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=205.64 Aligned_cols=290 Identities=19% Similarity=0.261 Sum_probs=225.6
Q ss_pred EEEeecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCC----CceEEEEccCCCCEEEEEEcCCC-CEEEEEeCCC
Q 006497 64 VHTSLNKNRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGG 136 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg--~~L~tgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg 136 (643)
....++-|...|++++|+|.. ++||+|+..|.|-+||+.+ ...+..+..|...|.+|.|+|.+ ..+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345567789999999999976 4788889999999999852 23456677899999999999954 6899999999
Q ss_pred cEEEEECCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-eeEeeccCCCeEEEEEcCCC-CE
Q 006497 137 AIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTK-SL 212 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~--~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~-~~~~~~~~~~V~~l~~sp~~-~~ 212 (643)
+|++-|++.......+.. ....+.++.|+.+...++.+..-|...+||+++... ...+..|...|++|+++|.. .+
T Consensus 258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~ 337 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWF 337 (498)
T ss_pred eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchh
Confidence 999999988754444433 556778888988888888888888999999987654 55667788899999999965 47
Q ss_pred EEEEECCCcEEEEECCCCce----eEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC----CCeEEEEeecCCC-
Q 006497 213 LVSGGKDSLVKLWDAKSGRE----LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR----AMKELESFRGHRK- 283 (643)
Q Consensus 213 l~sgs~dg~I~iwD~~~~~~----~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~----~~~~~~~~~~~~~- 283 (643)
|++++.|++++|||++.-.. +.....|...|.+..|+|++-.|++.+.|..|+|||.. ....+.++. |..
T Consensus 338 laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~ 416 (498)
T KOG4328|consen 338 LATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNR 416 (498)
T ss_pred eeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCc
Confidence 89999999999999985322 23345689999999999988779999999999999984 333333333 222
Q ss_pred -----CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEE-EEcCCCC-EEEEEECCCeEEEEec
Q 006497 284 -----DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGY-LLCSGSNDHTTKFWCR 355 (643)
Q Consensus 284 -----~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~s~d~~-~L~sgs~Dg~V~iWd~ 355 (643)
......|.| +.++|++|..-..|-|+|-..+....++.......|.++ .|+|-+. +++.++..|.|+||.-
T Consensus 417 t~RwlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 417 TGRWLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 234568999 899999999999999999877665555544434455554 7999887 5555567889999864
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=206.69 Aligned_cols=261 Identities=17% Similarity=0.300 Sum_probs=215.5
Q ss_pred eEEEEEcCCCCEEEEE--ECCCcEEEEeCCC--CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 75 INRVLWTPTGRRLITG--SQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 75 I~~i~~spdg~~L~tg--s~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
|.+++|+.... |+++ +.|..|++|.-.. ++....-+.....-.|++......|+++|+..++|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 88999998764 4444 4577899996332 22222222223345566655566899999999999999999888888
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-CCCeEEEEEcCCCC-EEEEEECCCcEEEEECC
Q 006497 151 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~V~~l~~sp~~~-~l~sgs~dg~I~iwD~~ 228 (643)
.++.|...|+++.++..+.+||+++..|.|.|..+.++.....+... ...|+-+.|++..+ +|.+++++|.|.+||+.
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 89999999999999999999999999999999999988877777654 44567899998766 56788999999999999
Q ss_pred CCceeEEe-ccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCc
Q 006497 229 SGRELCSF-HGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS 306 (643)
Q Consensus 229 ~~~~~~~~-~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~ 306 (643)
....+..+ +.|......|+|+| +..+|++.+.|..|.+||++..+....+. ...+.+.++|.+ ++.+|++|+..|.
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~ 273 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGE 273 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecC-CceEEEeecCCce
Confidence 87776655 56889999999999 55678899999999999999776666654 567899999999 8999999999999
Q ss_pred EEEEECCCCcceEEEecccCcceEEEEEcCCC
Q 006497 307 IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 307 I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~ 338 (643)
|+.||++..+..+.....|+..|++++|-+..
T Consensus 274 ~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 274 LIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999999999999999999999997654
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=197.80 Aligned_cols=256 Identities=12% Similarity=0.113 Sum_probs=194.9
Q ss_pred CeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEe
Q 006497 74 SINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 74 ~I~~i~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg-~~dg~V~iwd~~~~~~~~~ 151 (643)
.+.+++|+++++.| ++++.++.|++||..+++....+..+. .+..++|+++++.|+++ ..|+.|++||+.+.+.+..
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~ 110 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAE 110 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeE
Confidence 36789999999877 466778999999999988877776543 35778999999877655 5689999999998777666
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEE-ECCCcEEEEECCC
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKS 229 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg-~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sg-s~dg~I~iwD~~~ 229 (643)
+.. ...+.+++|++++++++++..++ .+.+||.++.+.+..+. ....+.+++|++++++|+++ ..++.|++||+++
T Consensus 111 ~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 111 IPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 542 34578899999999999888765 56778998876655543 23456789999999988655 4689999999999
Q ss_pred CceeEEeccCC-------CcEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE
Q 006497 230 GRELCSFHGHK-------NMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 230 ~~~~~~~~~~~-------~~i~~l~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
++.+..+..+. .....++|++++++++++ ..++.|.+||+++++.+..+. +...+.+++|++ ++.+|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEE
Confidence 88776654221 123568899999986554 456789999999888776554 445789999999 66666665
Q ss_pred -eCCCcEEEEECCCCcceEEEecccCcceEEEEEcC
Q 006497 302 -SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 302 -s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 336 (643)
..++.|++||+++.+.+..+.. ....+.+++++
T Consensus 267 ~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 267 NGVSNDVSVIDVAALKVIKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred cCCCCeEEEEECCCCcEEEEEEc--ccccceeEeCC
Confidence 5689999999988776666643 35668888764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=194.38 Aligned_cols=291 Identities=21% Similarity=0.309 Sum_probs=226.2
Q ss_pred cEEEEeecCCCCCeEEEEEcC----CC-CEEEEEECCCcEEEEeCCCCceEEEEc-----cCCCCEEEEEEcCCC----C
Q 006497 62 KFVHTSLNKNRCSINRVLWTP----TG-RRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHND----N 127 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~sp----dg-~~L~tgs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~s~~~----~ 127 (643)
++..+..+.|+..|..++|+. +. ..+++++ ...+.||+....-.++.++ .|+.....++|+-|. -
T Consensus 28 k~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 28 KYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred EeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCe
Confidence 566677889999999999984 22 3455555 4578888755432222222 367788889997653 4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEee---ccCCCeEE
Q 006497 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKS 203 (643)
Q Consensus 128 ~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~---~~~~~V~~ 203 (643)
+||+++.-|.|+|.|+.++++...+.+|...|+.|.++|+. +++++++.|.+|++||+.+..++..+- +|.+.|.+
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLS 186 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLS 186 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEE
Confidence 78999999999999999999999999999999999999976 788999999999999999999988774 68899999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCcee----------------------------EEeccCCCcEEEEEEcCCCCEE
Q 006497 204 VDWHPTKSLLVSGGKDSLVKLWDAKSGREL----------------------------CSFHGHKNMVLCVKWNQNGNWV 255 (643)
Q Consensus 204 l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~----------------------------~~~~~~~~~i~~l~~sp~g~~l 255 (643)
++|+.++.+|++++.|.+|++|++...+.. .+-..|.+.|.|+.|. |+++
T Consensus 187 vD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~i 264 (385)
T KOG1034|consen 187 VDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFI 264 (385)
T ss_pred EEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhhe
Confidence 999999999999999999999999832110 0123466777788776 6889
Q ss_pred EEEECCCcEEEEECC-CC-------------eEEEEeecCCCCeEEEEEecC-CCCEEEEEeCCCcEEEEECCCCcceEE
Q 006497 256 LTASKDQIIKLYDIR-AM-------------KELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVE 320 (643)
Q Consensus 256 ~s~s~dg~I~iwd~~-~~-------------~~~~~~~~~~~~I~~l~~sp~-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 320 (643)
++-+-++.|..|.-. -. ..+.++.-....|+.+.|.-+ -.+.||.|...|.|++||++.......
T Consensus 265 lSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ 344 (385)
T KOG1034|consen 265 LSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKC 344 (385)
T ss_pred eecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccC
Confidence 999999999999862 11 123445555566766655431 578899999999999999987665311
Q ss_pred ---EecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 321 ---IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 321 ---~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
........|...+|+.|+.+|+..++|++|.-||.
T Consensus 345 ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 12223457999999999999999999999999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=201.69 Aligned_cols=279 Identities=22% Similarity=0.369 Sum_probs=207.7
Q ss_pred EEEEEcCCCCEEEEEECCC-----cEEEEeCCCCceEEEEccCC----CCEEEEEEcC-------CCCEEEEEeCCCcEE
Q 006497 76 NRVLWTPTGRRLITGSQSG-----EFTLWNGQSFNFEMILQAHD----HAIRSMVWSH-------NDNWMVSGDDGGAIK 139 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~dg-----~I~iwd~~~~~~~~~l~~h~----~~V~~l~~s~-------~~~~L~sg~~dg~V~ 139 (643)
-.+..-|+.++|+++-.+. .|+||+-.... .+-.|. ..-.|++|.. .|+++|.|+.|-.|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~n---lYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEEN---LYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCcc---eeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 3455666667777765432 36666644321 111222 2335777754 257999999999999
Q ss_pred EEECCCCceE---------------------EeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeecc
Q 006497 140 YWQNNMNNVK---------------------ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH 197 (643)
Q Consensus 140 iwd~~~~~~~---------------------~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~ 197 (643)
|||+.-...+ ....+|.+.|.+|+|+.+- +.||+++.|.+|++||+.++++..++..|
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~ 285 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHH 285 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhc
Confidence 9997522100 0113688888899998764 56899999999999999999999999999
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCC-eE
Q 006497 198 GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAM-KE 274 (643)
Q Consensus 198 ~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~-~~ 274 (643)
...|.+++|++. ..+|++|+.|++|.+.|.|........-...+.|..++|.+. ...+++++.||+|+-+|+|+. +.
T Consensus 286 ~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 286 GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP 365 (463)
T ss_pred CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc
Confidence 999999999985 468999999999999999953322222224577999999984 456778889999999999975 88
Q ss_pred EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEE-ecccCcceEEEEEcCCC-CEEEEEECCCeEEE
Q 006497 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKF 352 (643)
Q Consensus 275 ~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~d~-~~L~sgs~Dg~V~i 352 (643)
+.+++.|...|.+|+++.....++++++.|+.|++|++......... ....-+...|+++.++- -+|+.|+..+.++|
T Consensus 366 vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~v 445 (463)
T KOG0270|consen 366 VWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRV 445 (463)
T ss_pred eeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEE
Confidence 99999999999999999988899999999999999999654432111 11112245667777764 56788888889999
Q ss_pred EecCC
Q 006497 353 WCRNR 357 (643)
Q Consensus 353 Wd~~~ 357 (643)
||+-.
T Consensus 446 wd~~~ 450 (463)
T KOG0270|consen 446 WDIFT 450 (463)
T ss_pred eeccc
Confidence 99854
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=195.63 Aligned_cols=287 Identities=19% Similarity=0.321 Sum_probs=222.7
Q ss_pred CCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCC---------ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 006497 71 NRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSF---------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKY 140 (643)
Q Consensus 71 h~~~I~~i~~spdg~-~L~tgs~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~i 140 (643)
...+|..+.|..+.. +|++|+.|..|+||.++.. +....+..|..+|+++.|+++|++|++|+++|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 456899999998876 9999999999999975432 245567789999999999999999999999999999
Q ss_pred EECC--------C--------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEE
Q 006497 141 WQNN--------M--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSV 204 (643)
Q Consensus 141 wd~~--------~--------~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l 204 (643)
|... + ......+.+|...|.+++|++|++.+++++.|+.+++||+..+..+..+..|...|..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9755 2 23445567899999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCceeEEec--------c-----------C----CCcEEEEEEcCCCCEEEEEE--
Q 006497 205 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--------G-----------H----KNMVLCVKWNQNGNWVLTAS-- 259 (643)
Q Consensus 205 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~--------~-----------~----~~~i~~l~~sp~g~~l~s~s-- 259 (643)
+|+|.++++++-+.|...+++++...+.+.... . | ..-...++|+|||.+|++..
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccce
Confidence 999999999999999887777766443322211 0 1 12245688999999988753
Q ss_pred --CC-----CcEEEEECCCC-eEEEEeecCCCCeEEEEEecC-----------------CCCEEEEEeCCCcEEEEECCC
Q 006497 260 --KD-----QIIKLYDIRAM-KELESFRGHRKDVTALAWHPF-----------------HEEYFVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 260 --~d-----g~I~iwd~~~~-~~~~~~~~~~~~I~~l~~sp~-----------------~~~~l~sgs~dg~I~iwd~~~ 314 (643)
.+ +..++|+-+.. +.+..+......+..+.++|- .+..++.++ ...|+|||.++
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEecccc
Confidence 12 23455554322 223444444455555554441 122344444 56999999999
Q ss_pred CcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 315 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 315 ~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
...+......|-..|++++|+.||..|+..+.||...+-.++..
T Consensus 331 ~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 331 LEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred ccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 88988888899999999999999999999999999888776543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-22 Score=197.48 Aligned_cols=245 Identities=25% Similarity=0.462 Sum_probs=193.9
Q ss_pred EEeecCCCCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCC----------------CceEEEEccCCCCEEEEEEcCC-
Q 006497 65 HTSLNKNRCSINRVLWTPTG--RRLITGSQSGEFTLWNGQS----------------FNFEMILQAHDHAIRSMVWSHN- 125 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg--~~L~tgs~dg~I~iwd~~~----------------~~~~~~l~~h~~~V~~l~~s~~- 125 (643)
....-.|.+.|+.+..++-+ .+.++-+..|.|.|||+.. .+.+.++.+|...=+.|+|++-
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~ 223 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIK 223 (440)
T ss_pred cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccc
Confidence 34445678888888887765 3455567789999998542 3456778889999999999983
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEE---eecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCee--eeEeeccCC
Q 006497 126 DNWMVSGDDGGAIKYWQNNMNNVKA---NKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE--ERSLTGHGW 199 (643)
Q Consensus 126 ~~~L~sg~~dg~V~iwd~~~~~~~~---~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~--~~~~~~~~~ 199 (643)
...|++|..-+.|++|...++.-.. -+.+|...|.+|+|+|.. ..|++|+.|++|+|||++.+.. ....+.|..
T Consensus 224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s 303 (440)
T KOG0302|consen 224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS 303 (440)
T ss_pred ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence 3468999999999999887765332 345799999999999965 6789999999999999987722 223478999
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEECCC---CceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeE-
Q 006497 200 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE- 274 (643)
Q Consensus 200 ~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~---~~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~- 274 (643)
.|+.|.|+.+..+|++|+.||+++|||+|+ ++.+..|+-|+..|++|.|+| +...|++++.|..|.|||+.....
T Consensus 304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ 383 (440)
T KOG0302|consen 304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADE 383 (440)
T ss_pred ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCCh
Confidence 999999999888999999999999999985 467889999999999999999 456788899999999999853211
Q ss_pred -----------------EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 006497 275 -----------------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 275 -----------------~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~i 309 (643)
+.-+..-...|..+.|++....+|++.+.||.-.+
T Consensus 384 ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVf 435 (440)
T KOG0302|consen 384 EEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVF 435 (440)
T ss_pred hhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEE
Confidence 11112235678899999988899999999985443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=202.33 Aligned_cols=247 Identities=18% Similarity=0.279 Sum_probs=207.7
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE-eec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 006497 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA-NKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 187 (643)
Q Consensus 110 l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~-~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~ 187 (643)
+......|++++|+.+.+.||++-.||.|.||++..+-... .+. .....|.+|+|+ ++..|++.+.+|.|.-||+.+
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred EeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc
Confidence 33456889999999999999999999999999998764333 233 445689999999 566788999999999999999
Q ss_pred CeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCEEEEEECCCcEE
Q 006497 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIK 265 (643)
Q Consensus 188 ~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~ 265 (643)
.+.+..+....+.|++++.++.+..+++|++||.+++++...++.... +...++.|.+++|++++..|+.|+.||.|+
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 999999999999999999999999999999999888888887765543 344568899999999999999999999999
Q ss_pred EEECCCCeEEEEee-------c-CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC
Q 006497 266 LYDIRAMKELESFR-------G-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 266 iwd~~~~~~~~~~~-------~-~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 337 (643)
+||..++..+.... . ...-|+++.+. ....|++|+..|+|.+||...+...... ..|...|.+++.+.+
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~ 256 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADN 256 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCC
Confidence 99999988876322 1 22347778777 4788999999999999999777655444 458999999999999
Q ss_pred CCEEEEEECCCeEEEEecCCCCC
Q 006497 338 GYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
++++++++.|+.|.-|.....+.
T Consensus 257 ~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 257 EDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CCeEEEccCCCceEEEEecCCcc
Confidence 99999999999999998866544
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=205.08 Aligned_cols=317 Identities=20% Similarity=0.339 Sum_probs=233.3
Q ss_pred EEEEeecCCCCCeEEEEEcCCCC---EEEEEECCCcEEEEeCCCCce--EEEEccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGR---RLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 137 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~---~L~tgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~ 137 (643)
.+.+++.+|..+|+|+.|-++.+ ++++|+.|+.|++|.++.... +..+.+|... ++++...-....+.+.|+.
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~--~~cv~a~~~~~~~~~ad~~ 122 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKE--CVCVVARSSVMTCKAADGT 122 (764)
T ss_pred eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCccee--EEEEEeeeeEEEeeccCce
Confidence 57789999999999999999887 899999999999999884333 4445554444 4455433333333478999
Q ss_pred EEEEECCCCc--eEEeecCCCCC--eEEEEEecCCCE--EEEEeCCCcEEEEECC--CCeeeeEeeccCCCeEEEEEcCC
Q 006497 138 IKYWQNNMNN--VKANKSAHKES--VRDLSFCRTDLK--FCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPT 209 (643)
Q Consensus 138 V~iwd~~~~~--~~~~~~~~~~~--I~~l~~s~d~~~--l~s~s~dg~I~iwdl~--~~~~~~~~~~~~~~V~~l~~sp~ 209 (643)
+.+||.+..+ +...+...... -.|+++.++.+. ++.++.+..|.++.-. +.+.+..+.+|.+.|.+|+|...
T Consensus 123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~ 202 (764)
T KOG1063|consen 123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL 202 (764)
T ss_pred EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence 9999996555 22222222222 245555564333 4556667777777644 34567788999999999999875
Q ss_pred CC---EEEEEECCCcEEEEECCCCc---------------------eeE----------EeccCCCcEEEEEEcCCCCEE
Q 006497 210 KS---LLVSGGKDSLVKLWDAKSGR---------------------ELC----------SFHGHKNMVLCVKWNQNGNWV 255 (643)
Q Consensus 210 ~~---~l~sgs~dg~I~iwD~~~~~---------------------~~~----------~~~~~~~~i~~l~~sp~g~~l 255 (643)
+. +|++++.|..||||.+.-+. ... .+.+|+++|.++.|++.+..|
T Consensus 203 ~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~L 282 (764)
T KOG1063|consen 203 GGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDL 282 (764)
T ss_pred CCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhh
Confidence 44 88999999999999764221 010 123899999999999999999
Q ss_pred EEEECCCcEEEEECCCC--eEEE-----EeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc--ceEEEecccC
Q 006497 256 LTASKDQIIKLYDIRAM--KELE-----SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQVEIHNVHD 326 (643)
Q Consensus 256 ~s~s~dg~I~iwd~~~~--~~~~-----~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~ 326 (643)
++++.|.++.+|.-.+. --+. +..+.........|++ +++.+++-+..|-.++|...+.. .......+|-
T Consensus 283 LSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~ 361 (764)
T KOG1063|consen 283 LSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV 361 (764)
T ss_pred eecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-CCCEEEEecccCcEEEEeccCccceeecccccccc
Confidence 99999999999986543 2222 2223345688899999 88999999999999999832222 2334567899
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccccccccCCCccccceeeEeee
Q 006497 327 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAG 383 (643)
Q Consensus 327 ~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (643)
+.|++++|++.|.+|++.+.|-+-|+|-.. ..+..|.++.+..++||+.....+..
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehcc
Confidence 999999999999999999999999998776 33444899999999999877765544
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=203.41 Aligned_cols=271 Identities=15% Similarity=0.203 Sum_probs=215.0
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEccCC--CCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCC--ceEEeecCCCCCeE
Q 006497 87 LITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSG--DDGGAIKYWQNNMN--NVKANKSAHKESVR 160 (643)
Q Consensus 87 L~tgs~dg~I~iwd~~~~~~~~~l~~h~--~~V~~l~~s~~~~~L~sg--~~dg~V~iwd~~~~--~~~~~~~~~~~~I~ 160 (643)
|.+++....++|||....+....+..|+ -.+.+++|+.... |+++ +.|..|++|.-+.. ++-..-+...+.-.
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHH
Confidence 3344444579999988766555554443 3489999987654 4444 56788999964432 23333233334556
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccC-
Q 006497 161 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH- 239 (643)
Q Consensus 161 ~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~- 239 (643)
|++......++++++..+.|+|||++...+.+.+++|.+.|+++.++..+.+||+++..|.|.|..+.++.....|...
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 6666666789999999999999999988888899999999999999999999999999999999999998877777644
Q ss_pred CCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEEEEe-ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc
Q 006497 240 KNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317 (643)
Q Consensus 240 ~~~i~~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~~~~-~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 317 (643)
...|.-+.|++..+ +|.+++.+|.|.+||+.....+..+ +.|..+...|+|+|.++.+|++.+.|..|.+||++....
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence 34567899999665 5668899999999999877666554 478899999999999999999999999999999987766
Q ss_pred eEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 318 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 318 ~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
...+.. +.+...++|.++|.+|++|...|.|..||+.....
T Consensus 244 ~~~l~y--~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 244 TDRLTY--SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred cceeee--cCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 656555 44889999999999999999999999999965443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-22 Score=188.47 Aligned_cols=283 Identities=15% Similarity=0.190 Sum_probs=205.9
Q ss_pred EEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe----ecCCCCCeEEEEEecCCCEEEE-EeCCCcEEE
Q 006497 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN----KSAHKESVRDLSFCRTDLKFCS-CSDDTTVKV 182 (643)
Q Consensus 108 ~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~----~~~~~~~I~~l~~s~d~~~l~s-~s~dg~I~i 182 (643)
..+++|.+.|++++|+.||++|++++.|+.|+||+++..+.... .....+.-+.+.|.+|.+.++. +-...+|++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 34779999999999999999999999999999999876432111 1122345778999999876554 455678999
Q ss_pred EECCCCee---e---------eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 006497 183 WDFARCQE---E---------RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250 (643)
Q Consensus 183 wdl~~~~~---~---------~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp 250 (643)
|.+...+. . ..-+.|.-.|.++-....+++|++++.|..|.|||++ |+.+..+......-+..+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 98743221 0 0112345566677777788899999999999999999 899999887777788899999
Q ss_pred CCCEEEEEECCCcEEEEECC---C-----CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc-----
Q 006497 251 NGNWVLTASKDQIIKLYDIR---A-----MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----- 317 (643)
Q Consensus 251 ~g~~l~s~s~dg~I~iwd~~---~-----~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~----- 317 (643)
+|++|++++..-.|++|.+- . -+.+.++++|...|..++|++ +...+++.+.||+++|||.+-...
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn-~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSN-SSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCC-CcceeEEEecCCcEEEeeccceEecCCCc
Confidence 99999999999999999862 2 234678899999999999999 899999999999999999853211
Q ss_pred --eEE---EecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccccccccCCCccccceeeEeeecCCCCCCCC
Q 006497 318 --QVE---IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFPLP 392 (643)
Q Consensus 318 --~~~---~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 392 (643)
+.. .+....+.-..|+++|+++.|+.+. ...|++|..++..+....+ . ..+....+....++|.+.+-
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e----~--~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE----D--IHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH----H--hhcCceeeEEecCCCcEEee
Confidence 111 1111223344899999999888764 5679999876533222211 1 12234555667777777776
Q ss_pred CCCCCCC
Q 006497 393 EGPTTPG 399 (643)
Q Consensus 393 ~~~~~~g 399 (643)
++.+-..
T Consensus 391 cGdr~vr 397 (420)
T KOG2096|consen 391 CGDRYVR 397 (420)
T ss_pred ecceeee
Confidence 6665444
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=190.96 Aligned_cols=214 Identities=23% Similarity=0.381 Sum_probs=178.5
Q ss_pred eecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCee----------ee-----EeeccCCCeEEEEEcC-CCCEE
Q 006497 151 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQE----------ER-----SLTGHGWDVKSVDWHP-TKSLL 213 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~iwdl~~~~~----------~~-----~~~~~~~~V~~l~~sp-~~~~l 213 (643)
....|.+.|+++.+.+ .++++++|+.||.|.+||+++... +. .-.+|...|.++.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3456889999999876 578999999999999999965431 01 1125778899999988 55688
Q ss_pred EEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC---CCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEE
Q 006497 214 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN---GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~---g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~ 290 (643)
.+++.|.++++||.++.+....|+ ..+.|.+-+++|- --+|++|..|-.|++.|+.++..-.++.+|...|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEe
Confidence 889999999999999998888877 5667888888883 346788889999999999999999999999999999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCcceE--------------EEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 291 HPFHEEYFVSGSLDGSIFHWLVGHETPQV--------------EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 291 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~--------------~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
+|..+.+|++|+.||.|++||++...-.. +....|.+.|+.++|+.|+.++++++.|..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 99888899999999999999997652222 2234577889999999999999999999999999998
Q ss_pred CCCCccccc
Q 006497 357 RPGDTARDK 365 (643)
Q Consensus 357 ~~~~~~~~~ 365 (643)
.....+++.
T Consensus 277 ~G~ntl~~~ 285 (397)
T KOG4283|consen 277 SGRNTLREF 285 (397)
T ss_pred cCccccccc
Confidence 776666553
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=193.15 Aligned_cols=241 Identities=21% Similarity=0.393 Sum_probs=189.5
Q ss_pred cCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCC----------------CceEEeecCCCCCeEEEEEecCC-CEEE
Q 006497 112 AHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM----------------NNVKANKSAHKESVRDLSFCRTD-LKFC 172 (643)
Q Consensus 112 ~h~~~V~~l~~s~~~--~~L~sg~~dg~V~iwd~~~----------------~~~~~~~~~~~~~I~~l~~s~d~-~~l~ 172 (643)
.|.+.|+.+.-.+-+ .+.++=+..|.|+|||+.. .+.+.++.+|+..=..|+|++-. ..|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 466777777666543 4566667889999999632 23456667899999999999833 3488
Q ss_pred EEeCCCcEEEEECCCCeee---eEeeccCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC---ceeEEeccCCCcEEE
Q 006497 173 SCSDDTTVKVWDFARCQEE---RSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG---RELCSFHGHKNMVLC 245 (643)
Q Consensus 173 s~s~dg~I~iwdl~~~~~~---~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~---~~~~~~~~~~~~i~~ 245 (643)
+|..-+.|++|...++.-. .-+.+|...|..|+|+|.. ..|++|+.||+|+|||+|++ .++. .+.|.+.|+.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNV 307 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNV 307 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceee
Confidence 8888889999998775432 3456799999999999965 58899999999999999987 2333 3789999999
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCC---CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc-----
Q 006497 246 VKWNQNGNWVLTASKDQIIKLYDIRA---MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP----- 317 (643)
Q Consensus 246 l~~sp~g~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~----- 317 (643)
|.|+.+..+|++|+.||+++|||+|. ++.+.+|+-|+..|++|.|+|.+...|++++.|..|.|||+.-...
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~ 387 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID 387 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence 99999888999999999999999986 4568899999999999999998889999999999999999853322
Q ss_pred ----------eEEEeccc--CcceEEEEEcCC-CCEEEEEECCCeEEEEe
Q 006497 318 ----------QVEIHNVH--DNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 318 ----------~~~~~~~h--~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd 354 (643)
.-.++..| ...|..+.|++. -.+|++.+.|| +.||.
T Consensus 388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 01122224 456889999986 46788888888 44553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=226.39 Aligned_cols=282 Identities=20% Similarity=0.400 Sum_probs=219.6
Q ss_pred EEEEEcCCCC-EEEEEE----------CCCcEEEEeCCC--Cc----eEEEEccCCCCEEEEEEcCCCCE----EEEEeC
Q 006497 76 NRVLWTPTGR-RLITGS----------QSGEFTLWNGQS--FN----FEMILQAHDHAIRSMVWSHNDNW----MVSGDD 134 (643)
Q Consensus 76 ~~i~~spdg~-~L~tgs----------~dg~I~iwd~~~--~~----~~~~l~~h~~~V~~l~~s~~~~~----L~sg~~ 134 (643)
..++|++++. +|++|+ .+.++.||.+.. .+ .+..+. .....+.++|.+.+.. ||.|.+
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~e 88 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLE 88 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeecccc
Confidence 3578999886 555542 244566664332 22 222222 3567889999987765 889999
Q ss_pred CCcEEEEECCC------CceEEeecCCCCCeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeeeEee--ccCCCeEEEE
Q 006497 135 GGAIKYWQNNM------NNVKANKSAHKESVRDLSFCRTDL-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVD 205 (643)
Q Consensus 135 dg~V~iwd~~~------~~~~~~~~~~~~~I~~l~~s~d~~-~l~s~s~dg~I~iwdl~~~~~~~~~~--~~~~~V~~l~ 205 (643)
||.|.+||... ..++..+..|.+.|..|.|++... .||+|+.||.|.|||+++.+.-.+.. ...+.|.+|+
T Consensus 89 dG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~ls 168 (1049)
T KOG0307|consen 89 DGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLS 168 (1049)
T ss_pred CCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEec
Confidence 99999999654 234556678999999999999765 89999999999999998755544442 2456899999
Q ss_pred EcCCC-CEEEEEECCCcEEEEECCCCceeEEeccCCC--cEEEEEEcCCC-CEEEEEECCC---cEEEEECCCC-eEEEE
Q 006497 206 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKN--MVLCVKWNQNG-NWVLTASKDQ---IIKLYDIRAM-KELES 277 (643)
Q Consensus 206 ~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~--~i~~l~~sp~g-~~l~s~s~dg---~I~iwd~~~~-~~~~~ 277 (643)
|+..- ..|++++.+|++.|||+|..+.+..+..+.. .+..|+|+|+. ..|++++.|. .|.+||+|.- ..+++
T Consensus 169 WNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 169 WNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred cchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 98754 4788889999999999999888877765544 47889999965 4566666554 7999999864 45788
Q ss_pred eecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCC-EEEEEECCCeEEEEecC
Q 006497 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 278 ~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~-~L~sgs~Dg~V~iWd~~ 356 (643)
+++|...|.++.|++.|..+|++++.|++|.+|+.++++.+..+.. ..+.+..+.|++... ++++++-||.|.|+.+.
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 8999999999999998889999999999999999998777666665 577899999999764 88889999999999986
Q ss_pred CCC
Q 006497 357 RPG 359 (643)
Q Consensus 357 ~~~ 359 (643)
...
T Consensus 328 ~~~ 330 (1049)
T KOG0307|consen 328 GTD 330 (1049)
T ss_pred cCC
Confidence 544
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-19 Score=193.58 Aligned_cols=291 Identities=27% Similarity=0.521 Sum_probs=239.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc-eEEEEccCCC-CEEEEEE-cCCCC-EEEEEeC-CCcEEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHDH-AIRSMVW-SHNDN-WMVSGDD-GGAIKYW 141 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~-~~~~l~~h~~-~V~~l~~-s~~~~-~L~sg~~-dg~V~iw 141 (643)
.+..|...|.++.|..++..++.++.|+.+.+|+..... ....+..+.. .+..+.+ +.++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999988876 6666666443 7777777 77776 5555444 9999999
Q ss_pred ECCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCC-EEEEEEC
Q 006497 142 QNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGK 218 (643)
Q Consensus 142 d~~~-~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~-~l~sgs~ 218 (643)
|... ......+..|...|.+++|++++..+++++. |+.+++|++.....+..+..|...|.+++|++++. .+++++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 219 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecC
Confidence 9998 7778888899999999999999998888885 99999999998888888888999999999999887 5555589
Q ss_pred CCcEEEEECCCCceeE-EeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCC
Q 006497 219 DSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEE 296 (643)
Q Consensus 219 dg~I~iwD~~~~~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~I~~l~~sp~~~~ 296 (643)
|+.|++||...+..+. .+..|...+ ...|++++.++++++.|+.+++||++.... +..+..|...|.++.|++ ++.
T Consensus 220 d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 297 (466)
T COG2319 220 DGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-DGK 297 (466)
T ss_pred CCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-CCC
Confidence 9999999999887777 677777765 448999998899999999999999987665 555567789999999999 677
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEe-cccCcceEEEEEcCCCCEEEEE-ECCCeEEEEecCCCC
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIGYLLCSG-SNDHTTKFWCRNRPG 359 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~d~~~L~sg-s~Dg~V~iWd~~~~~ 359 (643)
.+++++.|+.+.+||........... ..|...|..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 298 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 298 LLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 77778888899999887766555544 4577779999994232455555 688999999997655
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-22 Score=223.38 Aligned_cols=245 Identities=20% Similarity=0.377 Sum_probs=204.2
Q ss_pred CCCeEEEEEcCCCCE----EEEEECCCcEEEEeCCCC------ceEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCcEEE
Q 006497 72 RCSINRVLWTPTGRR----LITGSQSGEFTLWNGQSF------NFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKY 140 (643)
Q Consensus 72 ~~~I~~i~~spdg~~----L~tgs~dg~I~iwd~~~~------~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~i 140 (643)
..+.++++|.+.+.. ||.|.+||.|.+||.... ..+..+..|++.|..+.|++.. ++||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 446789999988765 888899999999996542 3456677899999999999975 59999999999999
Q ss_pred EECCCCceEEee--cCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCC--CeEEEEEcCCCC-EEE
Q 006497 141 WQNNMNNVKANK--SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGW--DVKSVDWHPTKS-LLV 214 (643)
Q Consensus 141 wd~~~~~~~~~~--~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~--~V~~l~~sp~~~-~l~ 214 (643)
||++.-+.-... ....+.|.+|+|+..- ..|++++.+|++.|||++..+.+..+..+.. .+..|+|+|+.. .|+
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875543333 2356789999998754 5588889999999999999888877776554 477999999874 566
Q ss_pred EEECCC---cEEEEECCCC-ceeEEeccCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEE
Q 006497 215 SGGKDS---LVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 289 (643)
Q Consensus 215 sgs~dg---~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~ 289 (643)
++++|. .|.+||+|.- ..++++++|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+.++-.....+..+.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQ 303 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeee
Confidence 666554 5999999854 4667778999999999999954 8999999999999999999999999998889999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
|++.+..+|++.+.||.|.||.+....
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999888899999999999999986543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=201.27 Aligned_cols=271 Identities=15% Similarity=0.337 Sum_probs=218.4
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~ 153 (643)
.|..++|-|||..|+.+.. ..+.|||..++.....+++|.+.|+|++|+.||+++++|+.|..|.+|+..-...++ .
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk--Y 90 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK--Y 90 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceee--e
Confidence 8999999999998888774 479999999999999999999999999999999999999999999999765444433 3
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee
Q 006497 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 233 (643)
.|.+.|.|+.|+|-...|++|+. ...-+|..+.... ...+ ....|.+++|..||.+|+.|-.||+|.|-+.. ++..
T Consensus 91 SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 69999999999999988998875 3467887655322 2222 34578899999999999999999999998754 3333
Q ss_pred EEec---cCCCcEEEEEEcCCC-----CEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCC
Q 006497 234 CSFH---GHKNMVLCVKWNQNG-----NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 305 (643)
Q Consensus 234 ~~~~---~~~~~i~~l~~sp~g-----~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg 305 (643)
..+. +.++.|++|+|++.. ..+++.....++.+|.+. ++.+..-+.-.-.-.|+.+.+ ++.+++.|+.|+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~-NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFT-NGEYILLGGSDK 244 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheecc-CCcEEEEccCCC
Confidence 3333 467789999999843 578888888888888875 555554444455667888888 899999999999
Q ss_pred cEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 306 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 306 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
.+.+|.-+ +- ........+..||.++..|++..++.|+.||+|..|++
T Consensus 245 ~L~~fTR~-Gv-rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 245 QLSLFTRD-GV-RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ceEEEeec-Ce-EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 99999642 22 22333336779999999999999999999999999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-21 Score=195.50 Aligned_cols=242 Identities=18% Similarity=0.294 Sum_probs=193.3
Q ss_pred EEEEEcCC-------CCEEEEEECCCcEEEEeCCCCce---E------------------EEEccCCCCEEEEEEcCC-C
Q 006497 76 NRVLWTPT-------GRRLITGSQSGEFTLWNGQSFNF---E------------------MILQAHDHAIRSMVWSHN-D 126 (643)
Q Consensus 76 ~~i~~spd-------g~~L~tgs~dg~I~iwd~~~~~~---~------------------~~l~~h~~~V~~l~~s~~-~ 126 (643)
.|++|... |+++|+|+.|-.|.|||+.-... . ..-.+|+..|.+++|+.+ .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 56677543 58999999999999999652110 0 112368888999999875 4
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEE
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 205 (643)
Q Consensus 127 ~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~ 205 (643)
+.||+|+.|.+|++||+.+++...++..|...|.++.|++.. ..|++|+.|++|.+.|++........-...+.|..++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 689999999999999999999999999999999999999865 6799999999999999985443333333567899999
Q ss_pred EcCCC-CEEEEEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCe--EEEEeec
Q 006497 206 WHPTK-SLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK--ELESFRG 280 (643)
Q Consensus 206 ~sp~~-~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~--~~~~~~~ 280 (643)
|++.. ..+++++.||+|+-+|+|+. +++.+++.|...|.+|+++. .-.+|++++.|+.|++|++.... .+..-.-
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~ 416 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF 416 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc
Confidence 99865 46788889999999999975 89999999999999999998 45678899999999999986433 2332222
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc
Q 006497 281 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317 (643)
Q Consensus 281 ~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 317 (643)
.-+...|.++.+....+++.|+..+.++|||+.+...
T Consensus 417 ~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 417 KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 2344778888886777889999999999999866543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=202.48 Aligned_cols=251 Identities=16% Similarity=0.282 Sum_probs=195.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEE--EccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~--l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd 142 (643)
.....|...|..++|.+....|++++.|.++++||+++.+++.. +.+|.+.|.++||.+.+ ..|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 34567999999999999778899999999999999999888776 88999999999999965 5788999999999999
Q ss_pred CCCCce---------------------------EEeecCCCCCeEE---EEEecCCCEEEEEeC-CCcEEEEECCCCeee
Q 006497 143 NNMNNV---------------------------KANKSAHKESVRD---LSFCRTDLKFCSCSD-DTTVKVWDFARCQEE 191 (643)
Q Consensus 143 ~~~~~~---------------------------~~~~~~~~~~I~~---l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~ 191 (643)
+..... +.....+...|.. +.+..|+..||+++. |+.|+||||++....
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 643220 0111234445555 556678889999888 999999999775443
Q ss_pred eEe--------ecc---CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc--eeEEeccCCCc--EEEEEEcCCCCEEE
Q 006497 192 RSL--------TGH---GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR--ELCSFHGHKNM--VLCVKWNQNGNWVL 256 (643)
Q Consensus 192 ~~~--------~~~---~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~--~~~~~~~~~~~--i~~l~~sp~g~~l~ 256 (643)
... ..+ ...+.++..+..|.+|++.+.|+.|++||+.+.. .+..+.++... -..-..++|+.+|+
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~ 333 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLL 333 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEe
Confidence 221 112 3357788888888999988899999999998643 23333333221 22334678999999
Q ss_pred EEECCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 257 TASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 257 s~s~dg~I~iwd~~~~~~-~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
+|+.|...++|.+.+.+. ...+.+|.-.|++++|.+..-.-++++++|.+++||++....
T Consensus 334 SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 999999999999987654 566778999999999999777788999999999999995543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=199.92 Aligned_cols=117 Identities=20% Similarity=0.391 Sum_probs=101.4
Q ss_pred EEEEEEcC-CCCEEEEEECCCcEEEEECCCC-------eEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 006497 243 VLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 243 i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~-------~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~ 314 (643)
|+.+.|+| |...|+++++||.|+||.+..+ .....+..|...|+++.|+|.-.++|++++.|.+|++||+.+
T Consensus 630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 67788888 7778999999999999998643 335677889999999999998899999999999999999988
Q ss_pred CcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 315 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 315 ~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
.+....+. +|.+.|.+++|++||+.+++.+.||+|++|+-....+
T Consensus 710 ~~~~~~l~-gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 710 AKLYSRLV-GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred hhhhheec-cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 77655554 6999999999999999999999999999998754433
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-19 Score=186.46 Aligned_cols=290 Identities=29% Similarity=0.536 Sum_probs=236.7
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEEC-CCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCcEEE
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKY 140 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~~L~tgs~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~-~L~sg~~dg~V~i 140 (643)
.....+..|...|.+++|+++++++++++. |+.+++|+....+.+..+..|...|.+++|++++. ++++++.|+.|++
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~ 225 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRL 225 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEE
Confidence 455678899999999999999998888885 99999999998888999999999999999999887 5555599999999
Q ss_pred EECCCCceEE-eecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-eeEeeccCCCeEEEEEcCCCCEEEEEEC
Q 006497 141 WQNNMNNVKA-NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 141 wd~~~~~~~~-~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~-~~~~~~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
||...+.... .+..|...+ ...|++++..+++++.|+.+++||+..... ...+..|...|.++.|++++..+++++.
T Consensus 226 wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 304 (466)
T COG2319 226 WDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSS 304 (466)
T ss_pred EECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeC
Confidence 9988777777 577777775 448999998889999999999999986654 4444567889999999998888888999
Q ss_pred CCcEEEEECCCCceeEEec--cCCCcEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCC
Q 006497 219 DSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 295 (643)
Q Consensus 219 dg~I~iwD~~~~~~~~~~~--~~~~~i~~l~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 295 (643)
|+.+.+||+++........ .|...+..+.|.+++..++.+ ..|+.+.+|++............ ..+..+.+.. +
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~- 381 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D- 381 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-
Confidence 9889999999887766665 677779999994232556655 67889999999887733333322 2288999988 6
Q ss_pred CEEEE-EeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 296 EYFVS-GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 296 ~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
..++. +..++.+.+|+.............+ ..+..+.++.++..+++++.++.+++|++..
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 382 GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT-SRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCEEEEecCCCceEEEecccCeeeeeccCCC-CcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 55555 7889999999997776655554322 6899999999999999999999999999966
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-21 Score=186.99 Aligned_cols=272 Identities=16% Similarity=0.260 Sum_probs=202.7
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceEEee--cCCC-CCe
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH--NDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHK-ESV 159 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~--~~~~L~sg~~dg~V~iwd~~~~~~~~~~--~~~~-~~I 159 (643)
..+|++.++|.|+|||..+++.+..++++...++.+.|.. ....+.+|+.||+|++||++.......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5789999999999999999999999999999999999987 3578999999999999999876554433 3333 456
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEECCCCee-eeEe-eccCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCce
Q 006497 160 RDLSFCRTDLKFCSCSD----DTTVKVWDFARCQE-ERSL-TGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGRE 232 (643)
Q Consensus 160 ~~l~~s~d~~~l~s~s~----dg~I~iwdl~~~~~-~~~~-~~~~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~ 232 (643)
.+++..-+++.++++.. +-.|.+||++..+. +..+ ..|.+.|++|.|+|. -++|++|+.||.|.|||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 77777666777777653 67899999988766 4444 468999999999995 46999999999999999985432
Q ss_pred ---eEEeccCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEeecCCCC----------eEEE-EEecCCCCE
Q 006497 233 ---LCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRGHRKD----------VTAL-AWHPFHEEY 297 (643)
Q Consensus 233 ---~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----------I~~l-~~sp~~~~~ 297 (643)
+...-.+...|.++.|..++ +.|.+-+...+..+|+++.+.+...+....-. -+-| +.++.+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 22333477789999999876 45888889999999999988765444322100 0011 122334455
Q ss_pred EEEEeC-CCcEEEEECC------CCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 298 FVSGSL-DGSIFHWLVG------HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 298 l~sgs~-dg~I~iwd~~------~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
++.++. -+...++-+. ..+.+..+..+|..-|.++.|...+.+++||++||.|.+|..+
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 554444 5555555442 1233344555688889999999889999999999999999963
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=191.80 Aligned_cols=246 Identities=15% Similarity=0.306 Sum_probs=205.6
Q ss_pred EeecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCceEEE--EccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMI--LQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~--l~~h-~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
+++.--+.+|.+++|.++|. .+++++....+++||+.+.+..+. ..++ ...+.....++++++|+..+..|.|.|.
T Consensus 251 qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL 330 (514)
T KOG2055|consen 251 QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL 330 (514)
T ss_pred eeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee
Confidence 34444577999999999998 888999999999999998765443 2333 3467778889999999999999999999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCC-CeEEEEEcCCCCEEEEEECCC
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-DVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~-~V~~l~~sp~~~~l~sgs~dg 220 (643)
...+++.+..++ ..+.|.+++|+.|++.|++++.+|.|++||++...+++.+....+ .-++++.+.++.+||+|+..|
T Consensus 331 hakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G 409 (514)
T KOG2055|consen 331 HAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSG 409 (514)
T ss_pred hhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcc
Confidence 999998888765 467899999999999999999999999999999988888875332 235778889999999999999
Q ss_pred cEEEEECCC------CceeEEeccCCCcEEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEeec---CCCCeEEEE
Q 006497 221 LVKLWDAKS------GRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAMKELESFRG---HRKDVTALA 289 (643)
Q Consensus 221 ~I~iwD~~~------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--~dg~I~iwd~~~~~~~~~~~~---~~~~I~~l~ 289 (643)
.|.|||.++ .+.+..+......|+++.|++|..+|+.++ .+..+++..+.+......|.. .-+.|+|++
T Consensus 410 iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~a 489 (514)
T KOG2055|consen 410 IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMA 489 (514)
T ss_pred eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEE
Confidence 999999764 356667777778899999999999998887 466899999888776666643 335689999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECC
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
|+| ++.+++.|..+|+|.+|.+.
T Consensus 490 FSP-~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 490 FSP-NSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ecC-CCceEEeecCCCceeeEeec
Confidence 999 89999999999999999874
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=177.99 Aligned_cols=273 Identities=19% Similarity=0.350 Sum_probs=211.3
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC------------ceEEEEc-cCCCCEEEEEEc-------CCCCEEEEE
Q 006497 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------------NFEMILQ-AHDHAIRSMVWS-------HNDNWMVSG 132 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~------------~~~~~l~-~h~~~V~~l~~s-------~~~~~L~sg 132 (643)
.-...+.|+|||..|++-+.|..+.+|++-.. +...+++ .....|...+|- |+.+++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 34567899999999999999999999985321 1111121 134568888885 467899999
Q ss_pred eCCCcEEEEECCCCceEEeecC--CCC---CeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeee--eEee-----ccCC
Q 006497 133 DDGGAIKYWQNNMNNVKANKSA--HKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEE--RSLT-----GHGW 199 (643)
Q Consensus 133 ~~dg~V~iwd~~~~~~~~~~~~--~~~---~I~~l~~s~d~~~l~s~s~dg~I~iwdl~-~~~~~--~~~~-----~~~~ 199 (643)
+.|.-|++||.-++++...+.. |.+ ...+|+|++||..|++| ....|+|||+. .+... .... +..+
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 9999999999999998877643 333 34689999999998876 46899999993 33221 1111 2356
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCe-EEE
Q 006497 200 DVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMK-ELE 276 (643)
Q Consensus 200 ~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~~~~-~~~ 276 (643)
.|.|++|+|.. +.+++++....+-||.-...+.+..+.+|.+.|+.++|.++|+.|++|.. |..|..||+|..+ .+.
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence 78999999965 48999999999999988888999999999999999999999999999884 6789999998754 455
Q ss_pred EeecCCC-CeEEEEE--ecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC
Q 006497 277 SFRGHRK-DVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 277 ~~~~~~~-~I~~l~~--sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
.+..|.. .-..|.| .+ .+++|++|+.||.|++||+++..........++..|+.++++|--.++++++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 5655554 2233434 45 689999999999999999988666666667789999999999998888877644
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=188.07 Aligned_cols=257 Identities=20% Similarity=0.298 Sum_probs=198.6
Q ss_pred eCCCCceEEEEccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCCC----ceEEeecCCCCCeEEEEEecCC-CEEE
Q 006497 100 NGQSFNFEMILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTD-LKFC 172 (643)
Q Consensus 100 d~~~~~~~~~l~~h~~~V~~l~~s~~~--~~L~sg~~dg~V~iwd~~~~----~~~~~~~~~~~~I~~l~~s~d~-~~l~ 172 (643)
|+.+......++.+.+.|++++|+|.. +++|+|+..|.|-+||+.+. .-+..+..|...|.+|.|+|.+ ..++
T Consensus 172 ~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ 251 (498)
T KOG4328|consen 172 DLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIY 251 (498)
T ss_pred ccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhee
Confidence 344444555667789999999999964 58889999999999999522 2345567899999999999955 6799
Q ss_pred EEeCCCcEEEEECCCCeeeeEee--ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCce-eEEeccCCCcEEEEEEc
Q 006497 173 SCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWN 249 (643)
Q Consensus 173 s~s~dg~I~iwdl~~~~~~~~~~--~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~-~~~~~~~~~~i~~l~~s 249 (643)
+.+.||+|++-|+++......+. .....+.++.|+.+...++.+..=|.+.+||+++.+. ...+..|+..|++|+++
T Consensus 252 ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 252 SSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 99999999999998764433333 2445677888988888888888888999999998765 66667788899999999
Q ss_pred C-CCCEEEEEECCCcEEEEECCCCeE----EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC----CCcceEE
Q 006497 250 Q-NGNWVLTASKDQIIKLYDIRAMKE----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQVE 320 (643)
Q Consensus 250 p-~g~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~----~~~~~~~ 320 (643)
| ...+|++++.|++++|||+|.... +.....|...|.+..|||.++. |++.+.|.+|+|||.. .......
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccce
Confidence 9 456789999999999999986432 2333469999999999997666 8999999999999984 2222333
Q ss_pred EecccCc----ceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 321 IHNVHDN----TVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 321 ~~~~h~~----~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+...+.. ......|.|+..+|++|-.-..|-|+|-+.
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCC
Confidence 3322211 234568999999999999999999998643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=192.34 Aligned_cols=246 Identities=17% Similarity=0.325 Sum_probs=205.4
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE--EEEEeCCCcEEEE
Q 006497 106 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK--FCSCSDDTTVKVW 183 (643)
Q Consensus 106 ~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~--l~s~s~dg~I~iw 183 (643)
+-..+.+|++.|.||...+.|.+|++|+.||+|+||.+.++.++..+. ..+.|.|++|++.... ||++- +..+.|.
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 445678999999999999999999999999999999999999998864 4668999999997643 44333 3334444
Q ss_pred ECCCC-------------------------------------eeeeEeeccCCCeEEEEEcCCCCEEEEEECC---CcEE
Q 006497 184 DFARC-------------------------------------QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVK 223 (643)
Q Consensus 184 dl~~~-------------------------------------~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d---g~I~ 223 (643)
+-.-+ .-+...-.|...|+.|.|+.+|.+|++..-+ ..|.
T Consensus 470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl 549 (733)
T KOG0650|consen 470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL 549 (733)
T ss_pred CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence 32100 0012333477889999999999999998764 4699
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeC
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL 303 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~ 303 (643)
|+++...+...-|....+.|.++.|+|...+|++++. ..|+|||+...+.++.+......|..+++++ ++.-|+.++.
T Consensus 550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~ 627 (733)
T KOG0650|consen 550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY 627 (733)
T ss_pred EEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence 9999887777777777888999999999999998875 5799999998888888888889999999999 7888889999
Q ss_pred CCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 304 DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 304 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
|+.+..+|++-..........|...|++++|+..-.++++|+.||++.||--
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 9999999999888888888889999999999999999999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-20 Score=174.75 Aligned_cols=239 Identities=15% Similarity=0.271 Sum_probs=186.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec
Q 006497 117 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 196 (643)
Q Consensus 117 V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~ 196 (643)
..|+.|+..|.+||+|+.||.|.|||+.+...-..+.+|...|++++|++||++|++++.|..|.+||+..+..++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir- 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR- 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-
Confidence 7899999999999999999999999999999888999999999999999999999999999999999999999888877
Q ss_pred cCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceeEEecc----CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 197 HGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 197 ~~~~V~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~~~~~~~~----~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
..+.|..+.|+|... ..++.-.+..-.+.++...+....-.. .+....+..|...|++|++|...|.+.++|..+
T Consensus 105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t 184 (405)
T KOG1273|consen 105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAET 184 (405)
T ss_pred ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecch
Confidence 677999999998554 333333344455555554322111111 111234456888999999999999999999999
Q ss_pred CeEEEEeecCC-CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcce---EEEecc-------cCcceEEEEEcCCCCE
Q 006497 272 MKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---VEIHNV-------HDNTVWDLAWHPIGYL 340 (643)
Q Consensus 272 ~~~~~~~~~~~-~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~-------h~~~V~~l~~s~d~~~ 340 (643)
.+++..++... ..|..+.++- .++.|+.-+.|..|+.|+++.-... ...... .+..-.+++|+.||.+
T Consensus 185 ~e~vas~rits~~~IK~I~~s~-~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 185 LECVASFRITSVQAIKQIIVSR-KGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred heeeeeeeechheeeeEEEEec-cCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 99999998766 7899999998 8999999999999999998532111 011101 1223457889999999
Q ss_pred EEEEEC-CCeEEEEecCC
Q 006497 341 LCSGSN-DHTTKFWCRNR 357 (643)
Q Consensus 341 L~sgs~-Dg~V~iWd~~~ 357 (643)
+++++. -..++||....
T Consensus 264 v~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEeccccceeEEEEecCC
Confidence 887764 56799998643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-21 Score=207.25 Aligned_cols=291 Identities=18% Similarity=0.280 Sum_probs=238.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
.++.|.+|...|+|+.|...|.++++|+.|..|+||..++..++..+.+|.+.|+.++.+.++.++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 34678899999999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe----e-ccCCCeEEEEEcCCCCEEEEEEC
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL----T-GHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~----~-~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
.++..+..+.+|.+.|++|+|+|-. +.+.||++++||.+- ...... + .....+.++.|..++..+++++.
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccC
Confidence 9999999999999999999999854 678899999999871 111111 1 12345777888888889999999
Q ss_pred CCcEEEEECCCCceeEEeccCCCcEEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCE
Q 006497 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 297 (643)
Q Consensus 219 dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~ 297 (643)
|+.-..|.+..... +...+.-+.++.+ ..+.+++-.+-.+++|++.++..++.+.+|...+..+.++|.+..+
T Consensus 337 d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred CcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHh
Confidence 99988887653211 1111222222222 2466677778899999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccccc
Q 006497 298 FVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKF 366 (643)
Q Consensus 298 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~ 366 (643)
..+++.||.+.|||+..+..+.....+ ...+.+-+|+.||..++....-|.+.|..........+.+.
T Consensus 411 ~msag~dgst~iwdi~eg~pik~y~~g-h~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ak~ 478 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGIPIKHYFIG-HGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKKAKY 478 (1113)
T ss_pred hhhccCCCceEeeecccCCcceeeecc-cceeeccccCCCCceEecCCCCCceEEeccCCCcccccccc
Confidence 999999999999999888777666655 45678889999999999999999999998765444444333
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=176.74 Aligned_cols=292 Identities=14% Similarity=0.237 Sum_probs=223.7
Q ss_pred EEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC------ceEEEEc-cCCCCEEEEEEcCCCCEEEEEeCC
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF------NFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDG 135 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~------~~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~d 135 (643)
+..+.+.+|.+.|++|.|+.++++|++|+.|-.++||+++.. +.+.... .|...|.|++|...+.+|++|..+
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 345667899999999999999999999999999999996542 3333332 356899999999999999999999
Q ss_pred CcEEEEECCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee---eeEeeccCCCeEEEEEcCCC
Q 006497 136 GAIKYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTK 210 (643)
Q Consensus 136 g~V~iwd~~~~~~~~~~~--~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~---~~~~~~~~~~V~~l~~sp~~ 210 (643)
++|.+.|+++.+.+..+. ...+.|..+..+|.++.|++.+.++.|.+||++.... ...+.........+.|+|..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 999999999988777653 2335899999999999999999999999999976542 12223345567889999965
Q ss_pred -CEEEEEECCCcEEEEECCCCc-eeEEe---ccC---CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEeecC
Q 006497 211 -SLLVSGGKDSLVKLWDAKSGR-ELCSF---HGH---KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGH 281 (643)
Q Consensus 211 -~~l~sgs~dg~I~iwD~~~~~-~~~~~---~~~---~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~ 281 (643)
.+|++.+..+-+.+||++... .+... ++. ...-.++.|+++|+.|++.-....-.+||+-+.++ +..+...
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 578888888999999998542 22211 111 11235688999999998887777778899877554 3333311
Q ss_pred ------CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC----------------------cceEEEecccCcceEEEE
Q 006497 282 ------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE----------------------TPQVEIHNVHDNTVWDLA 333 (643)
Q Consensus 282 ------~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~----------------------~~~~~~~~~h~~~V~~l~ 333 (643)
...+.+++|. +...+++|+.+-.|++|.+-.. .....++.+|...++.+.
T Consensus 287 ~~GY~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCcceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 2346677776 4666999999999999987321 112345678999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEecC
Q 006497 334 WHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 334 ~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
|++...+|++.+..+.++||.-.
T Consensus 365 F~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 365 FSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ecCCcceEeccchhhheeccccc
Confidence 99999999999999999999753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=174.75 Aligned_cols=282 Identities=18% Similarity=0.235 Sum_probs=205.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
.|+.|.+.|+++.|..+++ |.+|...|.|++|++.+.+....++ .+...|+.+.-.++ +.|.+-+.|+.+.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4569999999999998876 9999999999999999988888787 67788999988877 6789999999999999987
Q ss_pred CceEEeecCCCCCeEEEEEecCC-----C----EEEEEeCCC-cEEEEECCCCeeeeEee----ccCCCeEEEEEcCC-C
Q 006497 146 NNVKANKSAHKESVRDLSFCRTD-----L----KFCSCSDDT-TVKVWDFARCQEERSLT----GHGWDVKSVDWHPT-K 210 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~-----~----~l~s~s~dg-~I~iwdl~~~~~~~~~~----~~~~~V~~l~~sp~-~ 210 (643)
...+.. |.-.++++.|++.. + .++.-++.. .+.+-|......+.... ...+.+.|..|.-+ +
T Consensus 87 s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~ 163 (323)
T KOG0322|consen 87 SAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACG 163 (323)
T ss_pred cceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccccc
Confidence 655443 33444555555421 1 111111100 12222222222222211 23456777775433 2
Q ss_pred C--EEEEEECCCcEEEEECCCCcee----------EEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC----eE
Q 006497 211 S--LLVSGGKDSLVKLWDAKSGREL----------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM----KE 274 (643)
Q Consensus 211 ~--~l~sgs~dg~I~iwD~~~~~~~----------~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~----~~ 274 (643)
+ ++++|.++|.|.+||+.++..+ .....|...|.++.|.+..+.=++++.+..+..|++... ..
T Consensus 164 s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~ 243 (323)
T KOG0322|consen 164 STFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI 243 (323)
T ss_pred ceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc
Confidence 2 5778889999999999987433 334468889999999876555667777888999988542 22
Q ss_pred EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 275 ~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
-.++....-.|..+.+-+ +++++|+++.|++|+||..++...+.. +..|...|++++|++|..++|+++.|+.|.+|+
T Consensus 244 ~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAV-LkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAV-LKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhh-hhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 334444556788888888 899999999999999999988776544 456899999999999999999999999999998
Q ss_pred c
Q 006497 355 R 355 (643)
Q Consensus 355 ~ 355 (643)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=170.35 Aligned_cols=270 Identities=19% Similarity=0.312 Sum_probs=201.8
Q ss_pred EEEEEEC----CCcEEEEeCCCCc---eEEEEccCCCCEEEEEEcCCC-CEEEEEeCC-------CcEEEEECCCC----
Q 006497 86 RLITGSQ----SGEFTLWNGQSFN---FEMILQAHDHAIRSMVWSHND-NWMVSGDDG-------GAIKYWQNNMN---- 146 (643)
Q Consensus 86 ~L~tgs~----dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~d-------g~V~iwd~~~~---- 146 (643)
.+++|+. |+.|.+.+++... ..+.+..|.+.|+.++-+|-+ ++|+++..+ -.+.||.+...
T Consensus 28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 3455543 5667776655432 234466678999999999855 556666542 23689976532
Q ss_pred -----ceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-eeEee-----ccCCCeEEEEEcC--CCCE
Q 006497 147 -----NVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLT-----GHGWDVKSVDWHP--TKSL 212 (643)
Q Consensus 147 -----~~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~-~~~~~-----~~~~~V~~l~~sp--~~~~ 212 (643)
+++..+. .+-+.|.|+.|.|++..+++.. |..|.+|++.+... +..+. .+....++-+|+| +++.
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccce
Confidence 2223332 4456899999999999998876 88999999987665 33332 2345677888988 6677
Q ss_pred EEEEECCCcEEEEECCCCceeEEec-cCCCcEEEEEEcCCCC-EEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEE
Q 006497 213 LVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQNGN-WVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALA 289 (643)
Q Consensus 213 l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~~i~~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~ 289 (643)
+++. .|+++..||+|+.++...++ .|...|..+.|+|+.. +|++|+.||.|+|||.|+-+ .+.++..|...|.++.
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 7665 57999999999988777764 5778899999999765 67889999999999998654 5889999999999999
Q ss_pred EecCCCCEEEEEeCCCcEEEEECCCCc----------------------------ceEEEecccCcceEEEEEcCC-CCE
Q 006497 290 WHPFHEEYFVSGSLDGSIFHWLVGHET----------------------------PQVEIHNVHDNTVWDLAWHPI-GYL 340 (643)
Q Consensus 290 ~sp~~~~~l~sgs~dg~I~iwd~~~~~----------------------------~~~~~~~~h~~~V~~l~~s~d-~~~ 340 (643)
|++..+.+|++++.|..|.+|....-. ..+..+..|++.|.+++|+.- --+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 999999999999999999999652110 112345568999999999874 466
Q ss_pred EEEEECCCeEEEEecCC
Q 006497 341 LCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 341 L~sgs~Dg~V~iWd~~~ 357 (643)
+|+-+.||.|.|=++.+
T Consensus 346 FASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVPR 362 (370)
T ss_pred EEEeccCceEEeecCCh
Confidence 78889999999877743
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=161.66 Aligned_cols=269 Identities=16% Similarity=0.261 Sum_probs=202.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCC----------CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQS----------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~----------~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
.|.+-+|++.+++|++|..+|.|.+..+++ ...+...++|++.|+.++|. .++|++|+. |.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeee
Confidence 466778999999999999999999998653 22345568999999999998 456777664 99999976
Q ss_pred CCCce----E---Ee-ec-----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCC
Q 006497 144 NMNNV----K---AN-KS-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 210 (643)
Q Consensus 144 ~~~~~----~---~~-~~-----~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~ 210 (643)
+.... + .. .. ..--.|+++...|..+.|+.++.|+.++-||+++++..+++++|.+.|.++.--...
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~ 168 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNAN 168 (325)
T ss_pred hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccC
Confidence 54322 0 00 01 122468899999888888888899999999999999999999999999999986666
Q ss_pred CEEEEEECCCcEEEEECCCCceeEEeccC----------CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec
Q 006497 211 SLLVSGGKDSLVKLWDAKSGRELCSFHGH----------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 280 (643)
Q Consensus 211 ~~l~sgs~dg~I~iwD~~~~~~~~~~~~~----------~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 280 (643)
..|++|++||+++|||+++++++..+... ..+|-+++.+ ..+|++|+ ...+.+|++++.+....|.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEe-
Confidence 78999999999999999999998877532 2346666654 56777765 5679999999988887776
Q ss_pred CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC-CCEEEEEECCCeEEEEe
Q 006497 281 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 281 ~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd 354 (643)
....+..+.|. ++.+++++..+.|.-|.+.... ...+.. .....++..|+-. -++|..++....+.|+.
T Consensus 245 ipa~v~~v~F~---~d~vl~~G~g~~v~~~~l~Gvl-~a~ip~-~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 245 IPARVHLVDFV---DDCVLIGGEGNHVQSYTLNGVL-QANIPV-ESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccceeEeeee---cceEEEeccccceeeeeeccEE-EEeccC-CccceeeecccCCceEEEEecccceeeeeee
Confidence 45667777774 5778888888899999874322 222222 2334666667654 35566677777887764
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=170.87 Aligned_cols=249 Identities=22% Similarity=0.390 Sum_probs=193.8
Q ss_pred EEEEeecCCCCCeEEEEEcCCCC-EEEEEECC-------CcEEEEeCCC---------CceEEEEc-cCCCCEEEEEEcC
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGR-RLITGSQS-------GEFTLWNGQS---------FNFEMILQ-AHDHAIRSMVWSH 124 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~-~L~tgs~d-------g~I~iwd~~~---------~~~~~~l~-~h~~~V~~l~~s~ 124 (643)
+..+.+..|-+.|..|+-+|... .|+++..+ ..+.||.+.. .+.+..+. .+-+.|.|+.|.|
T Consensus 54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 34566778899999999999664 45555432 2478997653 23334444 4556899999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-EEee-----cCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeeeEee-
Q 006497 125 NDNWMVSGDDGGAIKYWQNNMNNV-KANK-----SAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLT- 195 (643)
Q Consensus 125 ~~~~L~sg~~dg~V~iwd~~~~~~-~~~~-----~~~~~~I~~l~~s~--d~~~l~s~s~dg~I~iwdl~~~~~~~~~~- 195 (643)
+++.|++-. |..|.+|+++.... ...+ ..+....++-+|++ |++.+++. .|+++..||+++.++...+.
T Consensus 134 ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 134 NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh
Confidence 999988766 78899999887654 3222 23456778888988 56666654 58999999999887766664
Q ss_pred ccCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCC
Q 006497 196 GHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAM 272 (643)
Q Consensus 196 ~~~~~V~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~ 272 (643)
.|...|++++|+|+.. +|++|++||.|+|||.|.- ..+..+.+|..+|+++.|++ ...+|++++.|..|.+|...+.
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~sv 291 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSV 291 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccc
Confidence 5888899999999876 6889999999999999854 57888999999999999999 4578889999999999965321
Q ss_pred -----------------------------eEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 273 -----------------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 273 -----------------------------~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
..+.++..|+..|++++|+..+.-+||+-+.||++.|-.+.
T Consensus 292 SSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 292 SSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 12446778999999999999788899999999999887764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=169.84 Aligned_cols=242 Identities=21% Similarity=0.399 Sum_probs=186.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------------ceEEeecCCCCCeEEEEEe-------cCCCEEEEEeC
Q 006497 117 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-------------NVKANKSAHKESVRDLSFC-------RTDLKFCSCSD 176 (643)
Q Consensus 117 V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~-------------~~~~~~~~~~~~I~~l~~s-------~d~~~l~s~s~ 176 (643)
...+.|+|||..|++-+.|..+.+|++-.. +...........|.+.+|. |+.+++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 456899999999999999999999985321 1111112334567777775 56788999999
Q ss_pred CCcEEEEECCCCeeeeEeec--cCC---CeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCceeEE---e----ccCCCcE
Q 006497 177 DTTVKVWDFARCQEERSLTG--HGW---DVKSVDWHPTKSLLVSGGKDSLVKLWDA-KSGRELCS---F----HGHKNMV 243 (643)
Q Consensus 177 dg~I~iwdl~~~~~~~~~~~--~~~---~V~~l~~sp~~~~l~sgs~dg~I~iwD~-~~~~~~~~---~----~~~~~~i 243 (643)
|.-|++||.-+++....+.. |.+ ...+++|++||..|++|. ..+|++||+ |.|+.... + .+..+.|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999888777654 222 346899999999998875 478999999 55543221 1 1236678
Q ss_pred EEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCCcceEEE
Q 006497 244 LCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 244 ~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~ 321 (643)
.|++|+| +...+++++....+-||.-...+.+..+-+|.+.|+.++|.+ +++.|++|+ .|-.|..||++.....+..
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhh
Confidence 9999999 556899999999999999888999999999999999999999 566666665 4779999999887766555
Q ss_pred ecccCc-ceEEE--EEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 322 HNVHDN-TVWDL--AWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 322 ~~~h~~-~V~~l--~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
+..|.. .-..| ...+++++|++|+.||.|++||++..++
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 555544 22334 4467799999999999999999987666
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=189.94 Aligned_cols=251 Identities=25% Similarity=0.350 Sum_probs=196.6
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC--------CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 137 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~--------~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~ 137 (643)
.++..|.+.|+.++|.+....|++++.||.|.+|+++. .+.+.++.+|.+.|.|+++..+++.+++|+.||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 37888999999999999999999999999999999832 3457789999999999999999999999999999
Q ss_pred EEEEECCC----------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc--CCCeEEEE
Q 006497 138 IKYWQNNM----------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH--GWDVKSVD 205 (643)
Q Consensus 138 V~iwd~~~----------~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~--~~~V~~l~ 205 (643)
|+.|++.. ..+...+.+|.+.|+.++++.....|++|+.||+|++|+...... .++... ...-.+++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEe
Confidence 99995431 124456789999999999999998999999999999999866555 333321 22334555
Q ss_pred EcCCC-CEEEEEECCCcEEEEECCCCceeEEecc-------CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE
Q 006497 206 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHG-------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 277 (643)
Q Consensus 206 ~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~ 277 (643)
+-... ...++...-+.-.++|.+....+..+.. ....+..+.+++...+.+++..|+.|+++|..+++.+..
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 54322 1222222223333444444444443321 123577889999999999999999999999999999999
Q ss_pred eecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcce
Q 006497 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 318 (643)
Q Consensus 278 ~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 318 (643)
...|...++++++.+ ++-+|++++.|+.|++|.++.....
T Consensus 527 ~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred eeeccceecceeecC-CCceEEeecCCceeehhhccchhee
Confidence 999999999999999 8999999999999999998655443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-18 Score=185.11 Aligned_cols=288 Identities=17% Similarity=0.273 Sum_probs=219.2
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC----CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 69 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 69 ~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~----~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
..|.-.++|.++|++++++|++..||.|.||.--. ......+.-|...|++++|+.+|.+|++|+.+|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 34666799999999999999999999999996332 23456678899999999999999999999999999999999
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-----------CCCeEEEEEcCCCCEE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----------GWDVKSVDWHPTKSLL 213 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-----------~~~V~~l~~sp~~~~l 213 (643)
+++ .+.+..-.+.|..+.+++|+.+.+....|+.|.+....+.+...++.+. .+-.+.++++|.-+.+
T Consensus 282 T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~ 360 (792)
T KOG1963|consen 282 TGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSL 360 (792)
T ss_pred CCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCce
Confidence 988 6666778899999999999999999999999999987665554444321 3346788899977888
Q ss_pred EEEECCCcEEEEECCCCceeEEecc-----------CCCcEEEEEEcCCCCEEEEEE--------CC--CcEEEEECCCC
Q 006497 214 VSGGKDSLVKLWDAKSGRELCSFHG-----------HKNMVLCVKWNQNGNWVLTAS--------KD--QIIKLYDIRAM 272 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~~~~~~~~~-----------~~~~i~~l~~sp~g~~l~s~s--------~d--g~I~iwd~~~~ 272 (643)
+..+..+.|.+||+-+.+.+..+.. +...++.++.+-.|++++|.. .| -.+++|-....
T Consensus 361 vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~ 440 (792)
T KOG1963|consen 361 VLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPN 440 (792)
T ss_pred eecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCC
Confidence 8889999999999998877765531 122467777777899998864 22 35788865433
Q ss_pred e----EEEEe-ecCCCCeEEEEEecC-CCCEEEEEeCCCcEEEEECCCCcc---------eEEEecccCcceEEEEEcCC
Q 006497 273 K----ELESF-RGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETP---------QVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 273 ~----~~~~~-~~~~~~I~~l~~sp~-~~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~~h~~~V~~l~~s~d 337 (643)
. ....+ ..|...+...++... ....+++++.||.++||-+...+. +..+-..|...+++++|+.|
T Consensus 441 ~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~d 520 (792)
T KOG1963|consen 441 SKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQD 520 (792)
T ss_pred cceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCC
Confidence 2 22222 246665555555432 333899999999999998833221 22233347889999999999
Q ss_pred CCEEEEEECCCeEEEEecCCC
Q 006497 338 GYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
|.+ ++.+.|++|.+||..+.
T Consensus 521 Gsl-la~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 521 GSL-LAVSFDDTITIWDYDTK 540 (792)
T ss_pred CcE-EEEecCCEEEEecCCCh
Confidence 965 55667999999998763
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.4e-20 Score=175.68 Aligned_cols=248 Identities=14% Similarity=0.265 Sum_probs=194.5
Q ss_pred cEEEEeecC-CCCCeEEEEEcCCC----CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC-CEEEEEeCC
Q 006497 62 KFVHTSLNK-NRCSINRVLWTPTG----RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDG 135 (643)
Q Consensus 62 ~~~~~~l~~-h~~~I~~i~~spdg----~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~d 135 (643)
+.+...... |......++|+-|- -+||+++.-|.|+|.|+.++++...+.+|...|+.+.+.|+. ++|++++.|
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 344444444 78889999998653 478899999999999999999999999999999999999975 689999999
Q ss_pred CcEEEEECCCCceEEee---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee--------------------
Q 006497 136 GAIKYWQNNMNNVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-------------------- 192 (643)
Q Consensus 136 g~V~iwd~~~~~~~~~~---~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~-------------------- 192 (643)
..|++|++++..++..+ .+|.+.|.++.|+.++.+|++++.|.+|++|++...+...
T Consensus 158 ~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 158 HSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred ceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 99999999999988877 6799999999999999999999999999999997322111
Q ss_pred --------EeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-CCCce-------------eEEeccCCCcEEEEEE--
Q 006497 193 --------SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA-KSGRE-------------LCSFHGHKNMVLCVKW-- 248 (643)
Q Consensus 193 --------~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~-~~~~~-------------~~~~~~~~~~i~~l~~-- 248 (643)
+...|...|.|+.|- ++++++-+.++.|..|.. +-.+. +..+.-....|+-|.|
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 112355556666665 688999899999999987 21111 2223323334555544
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEE--EEee--cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 249 NQNGNWVLTASKDQIIKLYDIRAMKEL--ESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 249 sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~--~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
++-.+.||.|...|.|.+||++..+.. .++. .....|...+|+. ++.+|+..++|++|.-||.
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 556789999999999999999876652 2222 2345788999998 8999999999999999985
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=189.40 Aligned_cols=289 Identities=17% Similarity=0.298 Sum_probs=215.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccC---CCCEEEEEEcC--CCCEEEEEeCCCcEEEEE
Q 006497 68 LNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSH--NDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 68 l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~s~--~~~~L~sg~~dg~V~iwd 142 (643)
..++...-..+.|++-...++++.....|+|||.+.++....+..+ ...|+.+++.. |..+|++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3445556778899999999999998889999999998887777654 35789999866 346899999999999996
Q ss_pred CCC-----CceEEeecC-------CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec-cCCCeEEEEEcC-
Q 006497 143 NNM-----NNVKANKSA-------HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHP- 208 (643)
Q Consensus 143 ~~~-----~~~~~~~~~-------~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~V~~l~~sp- 208 (643)
-.. .+++..... ..+.-.-++|.....+|+++++-..|+|||......+..+.. .+..|+++.-+-
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 322 223322211 111123456777777788877789999999988777666543 344567666543
Q ss_pred CCCEEEEEECCCcEEEEECCCCc---eeEEeccCCCc--EEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEE--EEeec
Q 006497 209 TKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHKNM--VLCVKWNQNGN-WVLTASKDQIIKLYDIRAMKEL--ESFRG 280 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~~~---~~~~~~~~~~~--i~~l~~sp~g~-~l~s~s~dg~I~iwd~~~~~~~--~~~~~ 280 (643)
.|+.|++|..||.|++||.+... .+..++.|... |..+.+.+.|- .|++|+.||.|++||+|..... .++..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence 36899999999999999998543 46667778877 99999988664 4999999999999999974222 22222
Q ss_pred CC---CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEE-----EecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 281 HR---KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE-----IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 281 ~~---~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~-----~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
|. +.++++.++. ...++|+|+. +.|+||++........ +.......+.|++|+|..-+||+|+.|.+|.|
T Consensus 1300 ~~~yGs~lTal~VH~-hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHE-HAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred ccccCccceeeeecc-CCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence 22 3599999998 8899999998 9999999865432211 12223456899999999999999999999999
Q ss_pred EecCCC
Q 006497 353 WCRNRP 358 (643)
Q Consensus 353 Wd~~~~ 358 (643)
|.....
T Consensus 1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred eecCCc
Confidence 987653
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-19 Score=179.88 Aligned_cols=263 Identities=13% Similarity=0.271 Sum_probs=200.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEc--------CCCCEEEEEeCCCcEEEE
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--------HNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~~~~~L~sg~~dg~V~iw 141 (643)
.|...|.|+.|+.+...+.+++ |..+.+|+..+......+.--+..|....+. ...+.|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5666778999998877665555 5555555433332233332222222222211 123578889999999998
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
+ ..+++...+..|.+.|.+-.|++||.-|+++++||.|++|.- ++-...++......|.|++|.|+.+.++.+- .+.
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h 167 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GGH 167 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec-CCe
Confidence 6 346677778899999999999999999999999999999984 3333344445677899999999988776654 467
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
+.|=.+.-...+..++.|++-|.++.|++..++|++|++|-..+|||.. +..+..-..|+..|++++|.| + ..++.+
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~np-d-~~~~v~ 244 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNP-E-KDYLLW 244 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccceeeeeecc-c-cceeee
Confidence 8888888777888899999999999999999999999999999999965 777888888999999999999 4 666666
Q ss_pred eCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 302 SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 302 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
+.+ +++ +.....+.|..++||+||..++.|+..|.|.+
T Consensus 245 S~n-t~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SYN-TAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 543 443 33334678999999999999999999998765
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=162.38 Aligned_cols=276 Identities=16% Similarity=0.287 Sum_probs=200.6
Q ss_pred CeEEEEEcC--C-CCEEEEEEC----CCcEEEEeC--CCCceEEEE-ccCCCCEEEEEEcCCCC-----EEEEEeCCCcE
Q 006497 74 SINRVLWTP--T-GRRLITGSQ----SGEFTLWNG--QSFNFEMIL-QAHDHAIRSMVWSHNDN-----WMVSGDDGGAI 138 (643)
Q Consensus 74 ~I~~i~~sp--d-g~~L~tgs~----dg~I~iwd~--~~~~~~~~l-~~h~~~V~~l~~s~~~~-----~L~sg~~dg~V 138 (643)
.+.++.|+. + ..+||.|+. .+.|.|..+ ++++.+..- ..|...++.+.|.|+.+ +||+++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 577888883 2 346888764 356666543 334433222 25888999999999763 555544 469
Q ss_pred EEEECCCCceEE----e-----ecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCe---eeeEeeccCCCeEEEE
Q 006497 139 KYWQNNMNNVKA----N-----KSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQ---EERSLTGHGWDVKSVD 205 (643)
Q Consensus 139 ~iwd~~~~~~~~----~-----~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~iwdl~~~~---~~~~~~~~~~~V~~l~ 205 (643)
++|.+...+... . ...+...++++.|+. |-++|.+++-|.++.|||++++. ....+-.|..+|.+|+
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 999876422111 1 134567899999987 44788899999999999998863 3556778999999999
Q ss_pred EcCCC-CEEEEEECCCcEEEEECCCCceeEEec---cCCCcEEEEEEcC-CCCEEEEEECC-CcEEEEECCC-CeEEEEe
Q 006497 206 WHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFH---GHKNMVLCVKWNQ-NGNWVLTASKD-QIIKLYDIRA-MKELESF 278 (643)
Q Consensus 206 ~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~---~~~~~i~~l~~sp-~g~~l~s~s~d-g~I~iwd~~~-~~~~~~~ 278 (643)
|...+ +.+++++.||.||+||+|..+.-..+. ........++|++ |-+++++-..| ..|.|.|+|. ...+.++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99855 478999999999999999765433332 2245688899998 55777765544 5799999986 4568899
Q ss_pred ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc-----eEEEecccCcceEEEEEcCC-CCEEEEEECCCeEEE
Q 006497 279 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-----QVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKF 352 (643)
Q Consensus 279 ~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~i 352 (643)
+.|...|+.++|.|.....|++++.|..+.+||+..-.. .+.... ....|+.|.|++. ..+|+.+. ++++.+
T Consensus 284 ~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 284 RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 999999999999998899999999999999999964322 111122 3568999999964 56777665 445544
Q ss_pred E
Q 006497 353 W 353 (643)
Q Consensus 353 W 353 (643)
-
T Consensus 362 L 362 (364)
T KOG0290|consen 362 L 362 (364)
T ss_pred E
Confidence 3
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-17 Score=159.54 Aligned_cols=280 Identities=13% Similarity=0.201 Sum_probs=209.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCce
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNV 148 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d--g~V~iwd~~~~~~ 148 (643)
....|+.+.|+.|...|.+|+.|| .++|+.+..............|..+.|+ ..++|..+.+ ..+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCce
Confidence 455688888999999999999988 6788877655533333334456666665 4567666655 3489999887776
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc---CCCeEEEEEcCCCCEEEEEE--CCCcEE
Q 006497 149 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDVKSVDWHPTKSLLVSGG--KDSLVK 223 (643)
Q Consensus 149 ~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~---~~~V~~l~~sp~~~~l~sgs--~dg~I~ 223 (643)
+..+. ....|.++.++.+ .|+++-.+. |+|||+++.+.+.++... ...+.++.++.++.+|+.-+ ..|.|.
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 66653 4567888888644 566665544 999999999988887643 44566777777777887643 468899
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEEEEeecCC--CCeEEEEEecCCCCEEEE
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~~~--~~I~~l~~sp~~~~~l~s 300 (643)
|||+.+-+.+..+..|++.+-+++|+++|.+||++++.|+ ||||++.+++.+.+|+-.. ..|.+++|++ +..+|++
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~-ds~~L~~ 235 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSP-DSQFLAA 235 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECC-CCCeEEE
Confidence 9999999999999999999999999999999999999885 7999999999999998433 4688999999 8899999
Q ss_pred EeCCCcEEEEECCCCcce---------------------------------------EEEecccCcceEEEEEcCCCCEE
Q 006497 301 GSLDGSIFHWLVGHETPQ---------------------------------------VEIHNVHDNTVWDLAWHPIGYLL 341 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~---------------------------------------~~~~~~h~~~V~~l~~s~d~~~L 341 (643)
.+..++|.+|.+++.... ..+.......+..+.-..+...+
T Consensus 236 sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v 315 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRV 315 (391)
T ss_pred ecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEE
Confidence 999999999988642100 00000000122233323466889
Q ss_pred EEEECCCeEEEEecCCC
Q 006497 342 CSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~~~~ 358 (643)
..++.||.+..|.++..
T Consensus 316 ~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 316 LVASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEEcCCeEEEEEcCCC
Confidence 99999999999999764
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-18 Score=164.92 Aligned_cols=232 Identities=16% Similarity=0.269 Sum_probs=182.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCC
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN-NMN 146 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~-~~~ 146 (643)
-..+|+|.+|+.|...+|++..+..|.||.... .+...+++.|+..|++|+|++..+.|++++.|..-+||.. ..+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 346899999999999999999999999997554 4577889999999999999999999999999999999987 333
Q ss_pred c--eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee----EeeccCCCeEEEEEcCCCCEEEEEECCC
Q 006497 147 N--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER----SLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 147 ~--~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~----~~~~~~~~V~~l~~sp~~~~l~sgs~dg 220 (643)
+ ....+..++..++++.|++.+++||+++....|.||-++..+.-. .-+.+.+.|++++|++++-+|++|+.|+
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCc
Confidence 3 334456788999999999999999999999999999887654331 2234567899999999999999999999
Q ss_pred cEEEEEC-----CC-------------CceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEEEeecC
Q 006497 221 LVKLWDA-----KS-------------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGH 281 (643)
Q Consensus 221 ~I~iwD~-----~~-------------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~ 281 (643)
..++|.. ++ |..+.++....+.|..+.|+++|+.|+-.+.|..+.+-|..... .+......
T Consensus 169 k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~ 248 (361)
T KOG1523|consen 169 KCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATA 248 (361)
T ss_pred ceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhc
Confidence 9999864 21 12233343456789999999999999999999999999987654 34444444
Q ss_pred CCCeEEEEEecCCCCEEEEEeCC
Q 006497 282 RKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 282 ~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
.-+..++.|-. ++.+++++.|
T Consensus 249 ~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 249 QLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred cCCceeeEeec--CCceeecCCC
Confidence 45666666653 3333333333
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-17 Score=170.82 Aligned_cols=268 Identities=10% Similarity=0.105 Sum_probs=182.3
Q ss_pred EEEECCCcEEEEeCCC-Cc--eEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-CceEEe-ecCCCCCeEE
Q 006497 88 ITGSQSGEFTLWNGQS-FN--FEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNM-NNVKAN-KSAHKESVRD 161 (643)
Q Consensus 88 ~tgs~dg~I~iwd~~~-~~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~-~dg~V~iwd~~~-~~~~~~-~~~~~~~I~~ 161 (643)
++...++.|.+||+.+ ++ .+..+. +.+....+++++++++|++++ .++.|.+|+++. +++... ..........
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446689999999864 33 344443 346677899999999887764 578899999873 332211 1123345678
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEECCCCe----eeeEeeccCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCCceeEE
Q 006497 162 LSFCRTDLKFCSCSD-DTTVKVWDFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCS 235 (643)
Q Consensus 162 l~~s~d~~~l~s~s~-dg~I~iwdl~~~~----~~~~~~~~~~~V~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~~~~~~ 235 (643)
+++++++++|++++. ++.|.+||+++.. .+..+. +.....+++++++++++++++ .++.|.+||+++...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 999999998887764 8899999996432 122222 223467789999999886655 568999999986433211
Q ss_pred -----ec-cCCCcEEEEEEcCCCCEEEEEEC-CCcEEEEECCC--C--eEEEEeecCC------CCeEEEEEecCCCCEE
Q 006497 236 -----FH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA--M--KELESFRGHR------KDVTALAWHPFHEEYF 298 (643)
Q Consensus 236 -----~~-~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~~--~--~~~~~~~~~~------~~I~~l~~sp~~~~~l 298 (643)
.. ........++|++++++|++++. ++.|.+||++. + +.+.++.... .....+.++| ++++|
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 11 12344678999999999988876 89999999973 2 3344433211 1234688999 67777
Q ss_pred EEEe-CCCcEEEEECCCCcceEEEecc--cCcceEEEEEcCCCCEEEEEEC-CCeEEEEecCCC
Q 006497 299 VSGS-LDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSN-DHTTKFWCRNRP 358 (643)
Q Consensus 299 ~sgs-~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~L~sgs~-Dg~V~iWd~~~~ 358 (643)
+++. .++.|.+|+++.......+... -....+.+.|++|+++|+++.. +++|.+|+++..
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCC
Confidence 7765 4789999999655432222111 1124568999999999998775 899999998654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-18 Score=182.69 Aligned_cols=264 Identities=19% Similarity=0.265 Sum_probs=198.5
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCce--EE----eecCCCCCeEEEEEec
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNV--KA----NKSAHKESVRDLSFCR 166 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~~~~--~~----~~~~~~~~I~~l~~s~ 166 (643)
+.+.||+++....-.........|+|++|++. .++||.|..+|.|.+||+..+.. .. ....|...++.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999998876333333345789999999995 57888899999999999987654 22 2256889999999987
Q ss_pred CCCE--EEEEeCCCcEEEEECCCCeeee------Eee------ccCCCeEEEEEcCC-CCEEEEEECCCcEEEEEC---C
Q 006497 167 TDLK--FCSCSDDTTVKVWDFARCQEER------SLT------GHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA---K 228 (643)
Q Consensus 167 d~~~--l~s~s~dg~I~iwdl~~~~~~~------~~~------~~~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~---~ 228 (643)
+..- |++++.||.|..|+++...... ... .....+++++|.+. -+.+++|+++|.|.--+. +
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5544 9999999999999885433211 011 12236789999874 457999999999877332 2
Q ss_pred CCc-----eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEeecCCCCeEEEEEecCCCCEEEEEe
Q 006497 229 SGR-----ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR-AMKELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 229 ~~~-----~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
... ....+..|.+.|+++.++|-...++..+.|.+|+||... ....+..+..+...|++++|||....+|+++.
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d 461 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD 461 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc
Confidence 222 123455688999999999976655555559999999988 67778888878888999999998888999999
Q ss_pred CCCcEEEEECCCCcc-eEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 303 LDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 303 ~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.||.|.+||+..... .......+....+.+.|+++++.|++|...|++++|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999999999954432 2222222356677888999999999999999999999953
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-19 Score=178.60 Aligned_cols=208 Identities=20% Similarity=0.369 Sum_probs=159.4
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEE-ccCCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 140 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~~--~~~L~sg~~dg~V~i 140 (643)
....|.||.+.|+|++|+.||.+|++|+.|-.+.|||....+.+..+ .+|...|.++.|.|. ++++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45778999999999999999999999999999999998877776665 579999999999884 578999999999999
Q ss_pred EECCCC----------ceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeee----------eEeeccCC
Q 006497 141 WQNNMN----------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEE----------RSLTGHGW 199 (643)
Q Consensus 141 wd~~~~----------~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~----------~~~~~~~~ 199 (643)
+|++.. +....+..|...|..|+..+++ +.+.++++||+|+-+|++....- ..+...--
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 998742 2334456788999999999998 78999999999999999762211 11111223
Q ss_pred CeEEEEEcCCC-CEEEEEECCCcEEEEECCCC--------c----------eeEEec-cC--------CC---cEEEEEE
Q 006497 200 DVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG--------R----------ELCSFH-GH--------KN---MVLCVKW 248 (643)
Q Consensus 200 ~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~--------~----------~~~~~~-~~--------~~---~i~~l~~ 248 (643)
...|+.++|.. .+|++|+.|-..++||.+.. . ++..+. +| .. .++-+.|
T Consensus 202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf 281 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF 281 (758)
T ss_pred eeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEE
Confidence 56789999855 58999999999999995421 1 122221 11 11 2566789
Q ss_pred cCCCCEEEEEECCCcEEEEECCC
Q 006497 249 NQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 249 sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
+|+|.-|++.-....|+++|+..
T Consensus 282 npNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 282 NPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred CCCCcEEEEeeCCeEEEEEeecC
Confidence 99998777766666788988754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-18 Score=167.98 Aligned_cols=281 Identities=20% Similarity=0.289 Sum_probs=203.7
Q ss_pred hhhhHHhheeEEEeeccCcCccccccCchhhhcCccceEeecCCCCceeecEEEEeecCCCCCeEEEEEcCCCCEEEEEE
Q 006497 12 YTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGS 91 (643)
Q Consensus 12 ~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~spdg~~L~tgs 91 (643)
.+.+.-.+.+||+|.+...+...-. ..-..+..|..|...|++|.|+++|++||+|+
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~-----------------------~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD-----------------------MKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc-----------------------eeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 3445566778889987754311100 11123467899999999999999999999999
Q ss_pred CCCcEEEEeCC--------C--------CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCC
Q 006497 92 QSGEFTLWNGQ--------S--------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 155 (643)
Q Consensus 92 ~dg~I~iwd~~--------~--------~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~ 155 (643)
.+|.|.+|... + +...+.+.+|...|+.++|++++.++++++.|..+++||+..+.+...+..|
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 99999999654 2 3456678889999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee-------------------ccC----CCeEEEEEcCCCCE
Q 006497 156 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-------------------GHG----WDVKSVDWHPTKSL 212 (643)
Q Consensus 156 ~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~-------------------~~~----~~V~~l~~sp~~~~ 212 (643)
...+..++|.+.++++++-+.|...+++++.....+.... -|. .....++|+|||.+
T Consensus 165 ~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~l 244 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSL 244 (434)
T ss_pred ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcE
Confidence 9999999999999999999888877777764433222111 011 12456789999998
Q ss_pred EEEEEC----CC-----cEEEEECCC-CceeEEeccCCCcEEEEEEcC------------------CCCEEEEEECCCcE
Q 006497 213 LVSGGK----DS-----LVKLWDAKS-GRELCSFHGHKNMVLCVKWNQ------------------NGNWVLTASKDQII 264 (643)
Q Consensus 213 l~sgs~----dg-----~I~iwD~~~-~~~~~~~~~~~~~i~~l~~sp------------------~g~~l~s~s~dg~I 264 (643)
|++... ++ +.++|+-+. .+.+..+......+..+.|++ -+-.+++++ .+.|
T Consensus 245 lvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~sv 323 (434)
T KOG1009|consen 245 LVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSV 323 (434)
T ss_pred EEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceE
Confidence 887642 22 234554332 123333333333444444432 223345555 4579
Q ss_pred EEEECCCCeEEEEee-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc
Q 006497 265 KLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317 (643)
Q Consensus 265 ~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 317 (643)
.|||..+.+.+.... .|-..|+.++|+. ++..|+..+.||...+..++..+.
T Consensus 324 yvydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 324 YVYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceEEEEEcchhc
Confidence 999999877766554 5788999999998 899999999999988877755443
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=166.24 Aligned_cols=245 Identities=20% Similarity=0.281 Sum_probs=185.0
Q ss_pred EEccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-------ceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCc
Q 006497 109 ILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTT 179 (643)
Q Consensus 109 ~l~~h~~~V~~l~~s~-~~~~L~sg~~dg~V~iwd~~~~-------~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~ 179 (643)
.+.+|.+.|..++|+| ++..||+|++|.+|.||++-.+ +.+..+.+|...|-.++|++.. +.|++++.|++
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3568999999999999 4578999999999999986543 3466778999999999999965 67899999999
Q ss_pred EEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCC-cEEEEEEcCCCCEEEEE
Q 006497 180 VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKN-MVLCVKWNQNGNWVLTA 258 (643)
Q Consensus 180 I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~-~i~~l~~sp~g~~l~s~ 258 (643)
|.|||+.+++.+.++. |.+.|.+++|+.||.+|++.+.|.+|+|||.++++.+..-..|.+ .-..+.|-.++.++.+|
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999998888 999999999999999999999999999999999999988766654 34556677788855444
Q ss_pred E---CCCcEEEEECCCCeE---EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc--cCcceE
Q 006497 259 S---KDQIIKLYDIRAMKE---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVW 330 (643)
Q Consensus 259 s---~dg~I~iwd~~~~~~---~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~ 330 (643)
. .+..+-|||-.+.+. +.++. ..+.|.---|.++..-+.++|-.|+.|+.|.+......+..+.. ...+-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 3 577899999876554 33333 34456666677744445566778999999999877754444332 233455
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 331 DLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 331 ~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.+.|-|... +-.+..-..++|++..
T Consensus 314 G~g~mPKRG--l~Vs~cEI~rfyKl~~ 338 (472)
T KOG0303|consen 314 GMGFMPKRG--LDVSKCEIARFYKLHE 338 (472)
T ss_pred ccccccccc--ccchHHHHHHHHHhhc
Confidence 666665432 2223334455665543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=164.15 Aligned_cols=207 Identities=23% Similarity=0.409 Sum_probs=167.0
Q ss_pred eecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCC-------eeeeEeeccCCCeEEEEEcCCC-CEEEEEECCCc
Q 006497 151 NKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARC-------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSL 221 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~iwdl~~~-------~~~~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~ 221 (643)
...+|.+.|.+++|+| +++.||+|++|.+|.||++-.. +.+..+.+|...|.-++|+|.- +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3478999999999999 4577999999999999998443 3467788999999999999964 68899999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCC-eEEEEEecCCCCEEEE
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD-VTALAWHPFHEEYFVS 300 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-I~~l~~sp~~~~~l~s 300 (643)
|.|||+.+++.+.++. |.+.|.+++|+.||.+|++.+.|..|+|||.++++.+.+-..|.+. -..+.|.. ++.++.+
T Consensus 156 v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~-~g~i~tT 233 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLA-SGKIFTT 233 (472)
T ss_pred EEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEec-cCceeee
Confidence 9999999999999988 9999999999999999999999999999999999999988777753 34445554 5665554
Q ss_pred Ee---CCCcEEEEECCCCcceEEEec-ccCcceEEEEEcCCCCEEEEEE-CCCeEEEEecCCCC
Q 006497 301 GS---LDGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 359 (643)
Q Consensus 301 gs---~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~L~sgs-~Dg~V~iWd~~~~~ 359 (643)
|- .+..+.+||-++-.....+.. ...+.|.---|.+|.++|+.++ .|+.|+.|.+..+.
T Consensus 234 Gfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 234 GFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 43 467899999866554433222 2345566667888888887665 59999999986544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=177.12 Aligned_cols=240 Identities=16% Similarity=0.309 Sum_probs=196.2
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
...++++|++.|+|++|+.||+++|+|+.|..|.||+-+-.. +..+ .|++.|.|+.|+|-...|++++-+ ..-+|..
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~ 121 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWSP 121 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccCh
Confidence 347899999999999999999999999999999999854322 2222 499999999999999999988764 4778987
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee---ccCCCeEEEEEcCCC-----CEEEE
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTK-----SLLVS 215 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~---~~~~~V~~l~~sp~~-----~~l~s 215 (643)
+...+.+. .....|.+++|..||.+|+.|-.||+|.|-+-.. ++...+. +..+.|.+++|++.. ..+++
T Consensus 122 ~qK~V~K~--kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV 198 (1081)
T KOG1538|consen 122 EQKSVSKH--KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV 198 (1081)
T ss_pred hhhhHHhh--hhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence 66554432 2346788999999999999999999999987543 3333343 356789999999853 47888
Q ss_pred EECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCC
Q 006497 216 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHE 295 (643)
Q Consensus 216 gs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~ 295 (643)
..-..++.+|.+. |+.+.+-+...-.-.|+.+.++|.+++.|+.|+.+.+|. +.+-.+.++...+..|+.++..| ++
T Consensus 199 ~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-Ns 275 (1081)
T KOG1538|consen 199 ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NS 275 (1081)
T ss_pred EeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CC
Confidence 8888899999876 555554444555678999999999999999999999997 56888888888889999999999 89
Q ss_pred CEEEEEeCCCcEEEEEC
Q 006497 296 EYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~ 312 (643)
..++.|+.||+|..|++
T Consensus 276 Q~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 276 QYVVVGCQDGTIACYNL 292 (1081)
T ss_pred ceEEEEEccCeeehhhh
Confidence 99999999999999976
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-17 Score=151.49 Aligned_cols=231 Identities=17% Similarity=0.246 Sum_probs=178.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 115 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN----------NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~----------~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
..|.+-+|++.+++|++|..+|.|.+..+++- ..+.....|+..|..++|. +..|++++ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 34666788999999999999999999986531 2334447899999999998 33566655 59999998
Q ss_pred CCCCeeeeE------ee-------ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC
Q 006497 185 FARCQEERS------LT-------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 251 (643)
Q Consensus 185 l~~~~~~~~------~~-------~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~ 251 (643)
.++..+... +. ..--.|+++.+.|..+-|+.++.|+.++.||+++++..+++++|.+.|.+++--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 755333111 10 11236899999998888888889999999999999999999999999999998665
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEeecCC----------CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEE
Q 006497 252 GNWVLTASKDQIIKLYDIRAMKELESFRGHR----------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 252 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 321 (643)
...|++|++||+++|||+++.+++..+...+ ..|-+++. +++++++|+ ...+.+|.++.......+
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEeccCCCceEEE
Confidence 6679999999999999999999988775322 24566665 567888776 458899999887766555
Q ss_pred ecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 322 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 322 ~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
.. ...|..+.|. .+.+++++..+.|.-|.++
T Consensus 244 pi--pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 244 PI--PARVHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred ec--ccceeEeeee--cceEEEeccccceeeeeec
Confidence 43 4578888886 4568888888899999875
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=177.51 Aligned_cols=250 Identities=21% Similarity=0.321 Sum_probs=191.5
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 006497 107 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM--------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178 (643)
Q Consensus 107 ~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~--------~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg 178 (643)
..++..|.+.|+.++|.+....|++++.||+|++|++.. -+.+.++.+|.++|.|+++..++..+++++-||
T Consensus 287 k~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 287 KFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 345677889999999999999999999999999999832 134667789999999999999999999999999
Q ss_pred cEEEEECCC----------CeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccC--CCcEEEE
Q 006497 179 TVKVWDFAR----------CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH--KNMVLCV 246 (643)
Q Consensus 179 ~I~iwdl~~----------~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~--~~~i~~l 246 (643)
+|+.|++-. ......+.+|.+.|+.++++.....|++++.||++++|+...... .++... .+.-.++
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSV 445 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceE
Confidence 999996531 123346778999999999999999999999999999999876555 334322 2233455
Q ss_pred EEcCCC-CEEEEEECCCcEEEEECCCCeEEEEeec-------CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcce
Q 006497 247 KWNQNG-NWVLTASKDQIIKLYDIRAMKELESFRG-------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 318 (643)
Q Consensus 247 ~~sp~g-~~l~s~s~dg~I~iwd~~~~~~~~~~~~-------~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 318 (643)
.+-... .+.++...-+.-.++|+.....+..+.. ....+..+.+++ +..+.+++..|+.|+++|..++..+
T Consensus 446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~-~~~~~~~~hed~~Ir~~dn~~~~~l 524 (577)
T KOG0642|consen 446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP-TADITFTAHEDRSIRFFDNKTGKIL 524 (577)
T ss_pred eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-CCCeeEecccCCceecccccccccc
Confidence 554332 2233333333344444444444444432 124577888888 7799999999999999999887766
Q ss_pred EEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 006497 319 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 319 ~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~ 359 (643)
.... .|...++++++.++|-+|++++.|+.|++|+++...
T Consensus 525 ~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 525 HSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred hhee-eccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 6554 588899999999999999999999999999986533
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=163.85 Aligned_cols=196 Identities=20% Similarity=0.288 Sum_probs=163.1
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEec--
Q 006497 160 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-- 237 (643)
Q Consensus 160 ~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-- 237 (643)
.+++|+.++..|++++.||++|||+..+...+.....|...|.+++|++|+++|++.+.| ..+|||++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 678999999999999999999999988888888888899999999999999999999999 89999999997766554
Q ss_pred cCCCcEEEEEEcCCC---CEEE--EEECCCcEEEEECCCCeE-----EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcE
Q 006497 238 GHKNMVLCVKWNQNG---NWVL--TASKDQIIKLYDIRAMKE-----LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307 (643)
Q Consensus 238 ~~~~~i~~l~~sp~g---~~l~--s~s~dg~I~iwd~~~~~~-----~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I 307 (643)
..+..+..+.|+.|+ .+++ .....+.|+.||+..++. .++.....+.|++++++. ++++++.|+.||.|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLALGTMDGSV 305 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEEeccCCcE
Confidence 233446778888776 3333 333456677777654332 222233456899999998 89999999999999
Q ss_pred EEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 308 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.|++..+-.....+...|...|+.+.|+||.+++++.+.|..+.|..+..
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999888888888899999999999999999999999999999998854
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=155.19 Aligned_cols=238 Identities=16% Similarity=0.226 Sum_probs=187.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeee
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEE 191 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d--g~I~iwdl~~~~~~ 191 (643)
...++.+.|+.+...|.+|+.|| .++|+.+..............|..+-|+.. ++|..+.+ ..++++++++...+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 44677788998988899999988 678877665543333444455666677644 55554443 56999999888877
Q ss_pred eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc---CCCcEEEEEEcCCCCEEEEEE--CCCcEEE
Q 006497 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTAS--KDQIIKL 266 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~---~~~~i~~l~~sp~g~~l~s~s--~dg~I~i 266 (643)
..+. ....|.+|.++ .+.|+++-++. |+|||+++.+.+.++.. +...+.+++++..+.+|+.-+ ..|.|.|
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l 157 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL 157 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence 7776 45679999986 34566665544 99999999999888764 344466667776777888543 5689999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCc-EEEEECCCCcceEEEeccc-CcceEEEEEcCCCCEEEEE
Q 006497 267 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSG 344 (643)
Q Consensus 267 wd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~d~~~L~sg 344 (643)
||+.+.+.+..+..|++.+.+++|++ ++.+||++++.|+ |||+.+.++.++.++..+- -..|.+|+|++|+.+|++.
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 99999999999999999999999999 8999999999997 6899999988888876543 2468899999999999999
Q ss_pred ECCCeEEEEecCCCC
Q 006497 345 SNDHTTKFWCRNRPG 359 (643)
Q Consensus 345 s~Dg~V~iWd~~~~~ 359 (643)
++.++|+||+++...
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 999999999997644
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-18 Score=172.98 Aligned_cols=291 Identities=21% Similarity=0.319 Sum_probs=223.2
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEE-ccCCCCEEEEEEcCC--CCEEEEEeCCCcEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-QAHDHAIRSMVWSHN--DNWMVSGDDGGAIKY 140 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~s~~--~~~L~sg~~dg~V~i 140 (643)
+...|.+|.+.|+.|.|+..|..|++++.|..|.+||....+....+ .+|...|....|.|. ...|++++.||.|++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45778999999999999999999999999999999998887765554 468888888888774 568999999999998
Q ss_pred EECCCCc-e--EEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEee---ccCC---CeEEEEEcCCC
Q 006497 141 WQNNMNN-V--KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLT---GHGW---DVKSVDWHPTK 210 (643)
Q Consensus 141 wd~~~~~-~--~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~---~~~~---~V~~l~~sp~~ 210 (643)
=.+.... + ...+..|.+.|..++.-|+. ..|.+++.|+.+.-+|++.......+. .+.. ...+|+.+|..
T Consensus 214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8754332 2 23456799999999999877 458999999999999997654433332 2222 45688888865
Q ss_pred C-EEEEEECCCcEEEEECCCCce------eEEec------cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC--C---
Q 006497 211 S-LLVSGGKDSLVKLWDAKSGRE------LCSFH------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA--M--- 272 (643)
Q Consensus 211 ~-~l~sgs~dg~I~iwD~~~~~~------~~~~~------~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~--~--- 272 (643)
. .+++++.|..+++||.+.-.. +.++. .....|+|++|+.++.-|++.-.|-.|+++.-.. +
T Consensus 294 t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 294 TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCC
Confidence 4 899999999999999875321 22221 2334699999998877777777888899995321 2
Q ss_pred -------eEEEE-eecCCC--CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEE
Q 006497 273 -------KELES-FRGHRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 342 (643)
Q Consensus 273 -------~~~~~-~~~~~~--~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~ 342 (643)
..+.. +++|.. .|..+.|---...++++|+.-|.|.||+-.+...+..+.. ....|+||.=+|.-.+||
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg-Dr~VVNCLEpHP~~PvLA 452 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG-DRHVVNCLEPHPHLPVLA 452 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc-ccceEeccCCCCCCchhh
Confidence 12333 777764 4777776532588999999999999999876655444443 344899999999999999
Q ss_pred EEECCCeEEEEec
Q 006497 343 SGSNDHTTKFWCR 355 (643)
Q Consensus 343 sgs~Dg~V~iWd~ 355 (643)
+++-|..|+||.-
T Consensus 453 sSGid~DVKIWTP 465 (559)
T KOG1334|consen 453 SSGIDHDVKIWTP 465 (559)
T ss_pred ccCCccceeeecC
Confidence 9999999999976
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=177.23 Aligned_cols=292 Identities=15% Similarity=0.201 Sum_probs=208.9
Q ss_pred cEEEEeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCC-------ceEEEEccCCCCEEEEEEcCCCCEEEEEe
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSF-------NFEMILQAHDHAIRSMVWSHNDNWMVSGD 133 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~~~~~L~sg~ 133 (643)
..+...|..|+..|..++.+.+. .++++|+.||+|+|||.... +...++......+.++.....++.+|+++
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t 1117 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST 1117 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc
Confidence 34667788899999999998876 99999999999999996542 22333444577899999999999999999
Q ss_pred CCCcEEEEECCCCce-------EEeec--CCCCCeEEEEEecCC-C-EEEEEeCCCcEEEEECCCCeeeeEee--ccCCC
Q 006497 134 DGGAIKYWQNNMNNV-------KANKS--AHKESVRDLSFCRTD-L-KFCSCSDDTTVKVWDFARCQEERSLT--GHGWD 200 (643)
Q Consensus 134 ~dg~V~iwd~~~~~~-------~~~~~--~~~~~I~~l~~s~d~-~-~l~s~s~dg~I~iwdl~~~~~~~~~~--~~~~~ 200 (643)
.||.|++.+++..+. ..... .....|...+|.... . .|+.+...+.|..||++.......++ ...+.
T Consensus 1118 ~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1118 KDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred CCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccc
Confidence 999999998876321 11111 122223333444322 3 57778888999999998766655444 24568
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEec-cCCCcEEEEEEcC---CCCEEEEEE--CCCcEEEEECCCCeE
Q 006497 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ---NGNWVLTAS--KDQIIKLYDIRAMKE 274 (643)
Q Consensus 201 V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~~i~~l~~sp---~g~~l~s~s--~dg~I~iwd~~~~~~ 274 (643)
|++++.++.++++++|+..|.+.+||+|-+..+.++. .+...|+.++.++ ...++++++ ..+.|.+|++.++.+
T Consensus 1198 vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1198 VTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred eeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 9999999999999999999999999999888888775 3456677777766 234555544 477899999998876
Q ss_pred EEEeecCCC-------------------CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcce-----------------
Q 006497 275 LESFRGHRK-------------------DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ----------------- 318 (643)
Q Consensus 275 ~~~~~~~~~-------------------~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~----------------- 318 (643)
-..+....+ ....+.+.. .+.++++|+.|..|+.||.......
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s 1356 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSES 1356 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeeccCCCcccccccccCccccccccchh
Confidence 555543210 111222332 5778999999999999997432111
Q ss_pred -----------E-------------------E--------EecccCcceEEEEEcCC-CCEEEEEECCCeEEEEe
Q 006497 319 -----------V-------------------E--------IHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 319 -----------~-------------------~--------~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd 354 (643)
. . ....|...|+++++... ..+|++++.||.|+||.
T Consensus 1357 ~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1357 YDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 0 01126677899888765 36889999999999994
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-18 Score=173.68 Aligned_cols=272 Identities=17% Similarity=0.265 Sum_probs=221.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
...-..+.|+.+|+.|+.|+..|.|-.+|..++++...+. -...|.++.|..+..+||++- ...++|||-. +..+..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEee
Confidence 4456789999999999999999999999999999888876 467899999998888877654 5789999965 444444
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 231 (643)
++.+ ..|..+.|.|..-+|++++..|.++.-|+.+++.+..+....+.+..++-+|-+..+-+|..+|+|.+|...+.+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 4433 568899999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q 006497 232 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311 (643)
Q Consensus 232 ~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd 311 (643)
.+..+..|.+.|.+|++.++|+|++|.+.|..|+|||+|+...+.++.. ......+++|. ..+||.+ ....|.||.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq--kglLA~~-~G~~v~iw~ 360 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ--KGLLALS-YGDHVQIWK 360 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc--ccceeee-cCCeeeeeh
Confidence 9999999999999999999999999999999999999999998888875 56677888874 4455544 455899995
Q ss_pred CCCC-c-ceEEEec--ccCcceEEEEEcCCCCEEEEEECCCeEE
Q 006497 312 VGHE-T-PQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTK 351 (643)
Q Consensus 312 ~~~~-~-~~~~~~~--~h~~~V~~l~~s~d~~~L~sgs~Dg~V~ 351 (643)
-... . ....... .....|.++.|+|-..+|-.|...|.-.
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ts 404 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITS 404 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCcee
Confidence 3211 1 1111111 1245899999999777776666655433
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.2e-17 Score=154.37 Aligned_cols=242 Identities=16% Similarity=0.321 Sum_probs=183.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCC-----EEEEEECCCcEEEEeCCCCce----EEEE-----ccCCCCEEEEEEcC-CCCE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGR-----RLITGSQSGEFTLWNGQSFNF----EMIL-----QAHDHAIRSMVWSH-NDNW 128 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~-----~L~tgs~dg~I~iwd~~~~~~----~~~l-----~~h~~~V~~l~~s~-~~~~ 128 (643)
+.+.-..|.-+++.+-|.|+.+ +||+.+ ..++||.+...+. ...+ ..+...++++.|+. |-++
T Consensus 88 ~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 88 VEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred eccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 3334457888999999999873 455443 4799998764221 1111 23456899999987 5578
Q ss_pred EEEEeCCCcEEEEECCCCc---eEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeecc---CCCe
Q 006497 129 MVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGH---GWDV 201 (643)
Q Consensus 129 L~sg~~dg~V~iwd~~~~~---~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~---~~~V 201 (643)
|.+++-|-++.|||++++. ++..+..|..+|.+++|...+ +.||+++.||.|++||++..+....+... ....
T Consensus 166 igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pL 245 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPL 245 (364)
T ss_pred eEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcc
Confidence 9999999999999999863 567778999999999999865 56899999999999999886655444322 3467
Q ss_pred EEEEEcCCC-CEEEEEECC-CcEEEEECCCC-ceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeE---
Q 006497 202 KSVDWHPTK-SLLVSGGKD-SLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKE--- 274 (643)
Q Consensus 202 ~~l~~sp~~-~~l~sgs~d-g~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~--- 274 (643)
..++|++.+ +++|+-..| ..|.|.|+|.- ..+..+.+|.+.|+.|+|.| ....|++++.|..+.|||+...-.
T Consensus 246 lRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~ 325 (364)
T KOG0290|consen 246 LRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENG 325 (364)
T ss_pred eeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCC
Confidence 889998754 567765544 57999999964 56788999999999999999 567899999999999999975322
Q ss_pred ---EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 006497 275 ---LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 275 ---~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~i 309 (643)
+..+. ....|+.+.|++...++|+.+... ++.+
T Consensus 326 ~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k-klei 361 (364)
T KOG0290|consen 326 EDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK-KLEI 361 (364)
T ss_pred CCchhhhh-ccceeeeeeecccCCCEEEEEecC-eeeE
Confidence 23333 567899999998788888887643 4433
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-16 Score=166.68 Aligned_cols=246 Identities=17% Similarity=0.254 Sum_probs=186.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM----NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~----~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~ 188 (643)
|...++|.+++++++++|++..||.|.+|.-.. ......+.-|.+.|.+++|+.+|.+|++|+.++.+.+|.++++
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG 283 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC
Confidence 334568899999999999999999999996332 2234455778999999999999999999999999999999998
Q ss_pred eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc-----------CCCcEEEEEEcCCCCEEEE
Q 006497 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-----------HKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 189 ~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-----------~~~~i~~l~~sp~g~~l~s 257 (643)
+ ..-+..-.+.|..+.+++|+++.++...|+.|.+....+.....++.+ ..+-.+.++++|.-+.++.
T Consensus 284 ~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vl 362 (792)
T KOG1963|consen 284 K-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVL 362 (792)
T ss_pred C-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceee
Confidence 7 555666788999999999999999999999999998765443333321 2344678899997778888
Q ss_pred EECCCcEEEEECCCCeEEEEeec-----C------CCCeEEEEEecCCCCEEEEEeC--------C--CcEEEEECCCCc
Q 006497 258 ASKDQIIKLYDIRAMKELESFRG-----H------RKDVTALAWHPFHEEYFVSGSL--------D--GSIFHWLVGHET 316 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~~~~~~~~-----~------~~~I~~l~~sp~~~~~l~sgs~--------d--g~I~iwd~~~~~ 316 (643)
.+..+.|.+||+-+.+.+..+.. + ...+++++.+- .+.+++|.-. | -.+++|-.....
T Consensus 363 n~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 363 NGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred cCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 88999999999988777665531 1 12366777776 4788877642 2 357889775443
Q ss_pred c----eEEEecccCcceEEEEEcCC--CCEEEEEECCCeEEEEecCCCCC
Q 006497 317 P----QVEIHNVHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 317 ~----~~~~~~~h~~~V~~l~~s~d--~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
. ..++...|+..+...++... ...+++++.||.++||.+....+
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n 491 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSN 491 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccc
Confidence 3 33455668877777766553 23799999999999999954333
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-16 Score=169.71 Aligned_cols=235 Identities=11% Similarity=0.108 Sum_probs=165.7
Q ss_pred CCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCC
Q 006497 93 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169 (643)
Q Consensus 93 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~ 169 (643)
+..|+|||.+..+ ...+..+...+.+.+|++|+++|+.++.+ ..|++||+.+++.... .........++|++|++
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCC
Confidence 4689999987655 55667788889999999999999887654 3699999988764332 22233445789999999
Q ss_pred EEEEEe-CCCcEEEE--ECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE-CCCcEEEEECCCC-ceeEEeccCCCcEE
Q 006497 170 KFCSCS-DDTTVKVW--DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNMVL 244 (643)
Q Consensus 170 ~l~s~s-~dg~I~iw--dl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs-~dg~I~iwD~~~~-~~~~~~~~~~~~i~ 244 (643)
.|+.+. .++.+.|| |+.+++ ...+..+...+.+.+|++|++.|+.++ .++...||+++.. .....+ .+.. .
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~ 336 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y 336 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C
Confidence 888764 57765554 665554 445555666788999999999777655 5788888876532 222333 3333 4
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC-CcceEEEec
Q 006497 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH-ETPQVEIHN 323 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~ 323 (643)
++.|++|+++|++.+.++ +.+||+.+++....... .....+.|+| ++++|+.++.++.+.+|++.. .......+.
T Consensus 337 ~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 678999999998887765 66699988765433222 2345688999 788999988899888887632 222334445
Q ss_pred ccCcceEEEEEcCC
Q 006497 324 VHDNTVWDLAWHPI 337 (643)
Q Consensus 324 ~h~~~V~~l~~s~d 337 (643)
.|.+.+...+|++-
T Consensus 413 ~~~g~~~~p~wsp~ 426 (429)
T PRK01742 413 GSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCCCcccCCC
Confidence 67778899999874
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-15 Score=142.39 Aligned_cols=235 Identities=18% Similarity=0.290 Sum_probs=170.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEE-EeCC------CcEEEEECCCC
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDG------GAIKYWQNNMN 146 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~s-g~~d------g~V~iwd~~~~ 146 (643)
...+++|+.|...+++|.++| ++||+.+-.+.....+.+.+.+.-+...-..++|+. |+.+ ..|.|||-...
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 345599999999999999777 899998875543333333333222222223456654 3332 46999996666
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeeeEeeccC--CCeEEEEEcCCCCEEEE-EECCCcE
Q 006497 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLTGHG--WDVKSVDWHPTKSLLVS-GGKDSLV 222 (643)
Q Consensus 147 ~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~-~~~~~~~~~~~~--~~V~~l~~sp~~~~l~s-gs~dg~I 222 (643)
+.+.++ ....+|.++.+.++ .|++. .++.|+||... +.+.++.+.... ..+.+++-..+..+||. |-.-|.|
T Consensus 86 ~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 86 RCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred cEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 666665 45678999999766 45554 36889999986 445555554322 23444433333344444 3456899
Q ss_pred EEEECCCCce--eEEeccCCCcEEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCE
Q 006497 223 KLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQI-IKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEY 297 (643)
Q Consensus 223 ~iwD~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~-I~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~~ 297 (643)
.|-|+...+. ...+.+|.+.|.|++++-+|.+||+++..|+ |||||..+++.+.+++- ....|.+++||+ +..+
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp-~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSP-NSSW 240 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCC-CccE
Confidence 9999987655 4678899999999999999999999999996 79999999999999973 446799999999 8999
Q ss_pred EEEEeCCCcEEEEECCC
Q 006497 298 FVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 298 l~sgs~dg~I~iwd~~~ 314 (643)
|+++|+.|+|.|+.++.
T Consensus 241 LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EEEEcCCCeEEEEEeec
Confidence 99999999999998865
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.7e-17 Score=157.00 Aligned_cols=197 Identities=18% Similarity=0.305 Sum_probs=159.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC--CCCEEEEEECCCcEEEEECCCCceeEEe--ccCC-CcE
Q 006497 169 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHK-NMV 243 (643)
Q Consensus 169 ~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp--~~~~l~sgs~dg~I~iwD~~~~~~~~~~--~~~~-~~i 243 (643)
..+|++..+|.|++||..+++.+..++++...++.+.|.. ....+.+++.||+|++||+|+......+ ..+. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888899999999999999999999999999999976 4568999999999999999987655443 3344 456
Q ss_pred EEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE-EEEe-ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc
Q 006497 244 LCVKWNQNGNWVLTAS----KDQIIKLYDIRAMKE-LESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317 (643)
Q Consensus 244 ~~l~~sp~g~~l~s~s----~dg~I~iwd~~~~~~-~~~~-~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 317 (643)
.|++.+-.++.+++|+ .+-.|.+||+|..+. +..+ +.|...|+++.|+|.+.++|++||.||.|.+||++....
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7777776778888776 466899999998877 5444 579999999999999999999999999999999976533
Q ss_pred eEEE--ecccCcceEEEEEcCCC-CEEEEEECCCeEEEEecCCCCCccccc
Q 006497 318 QVEI--HNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 318 ~~~~--~~~h~~~V~~l~~s~d~-~~L~sgs~Dg~V~iWd~~~~~~~~~~~ 365 (643)
.-.+ ...|...|.++.|..++ +.|.+-+.+.+..+|+++....+.+.+
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 2211 12356779999999876 568888999999999998877665544
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-15 Score=155.13 Aligned_cols=240 Identities=9% Similarity=0.128 Sum_probs=164.0
Q ss_pred CCCeEEEEEcCCCCEEEEEE-CCCcEEEEeCCC-Cce--EEEEccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 006497 72 RCSINRVLWTPTGRRLITGS-QSGEFTLWNGQS-FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNMN 146 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs-~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~s~~~~~L~sg~~-dg~V~iwd~~~~ 146 (643)
.+....+++++|+++|++++ .++.|.+|+++. ++. ..... ..+....++|++++++|++++. ++.|.+|++++.
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 34577889999999988765 478899999863 332 22222 3345678999999998888764 789999998743
Q ss_pred c----eEEeecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeeeE-----ee-ccCCCeEEEEEcCCCCEEEE
Q 006497 147 N----VKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERS-----LT-GHGWDVKSVDWHPTKSLLVS 215 (643)
Q Consensus 147 ~----~~~~~~~~~~~I~~l~~s~d~~~l~s~s-~dg~I~iwdl~~~~~~~~-----~~-~~~~~V~~l~~sp~~~~l~s 215 (643)
. ....+ .+.....+++++++++++++++ .++.|.+||+++...+.. .. ........++|+++++++++
T Consensus 113 g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 113 GIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred CCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEE
Confidence 2 22222 2234567788999998886555 569999999976332211 11 12345678999999999988
Q ss_pred EEC-CCcEEEEECCC--Cc--eeEEeccC------CCcEEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeE----EEEee
Q 006497 216 GGK-DSLVKLWDAKS--GR--ELCSFHGH------KNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKE----LESFR 279 (643)
Q Consensus 216 gs~-dg~I~iwD~~~--~~--~~~~~~~~------~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~~~~~----~~~~~ 279 (643)
++. +++|.+||++. ++ .+..+... ......+.+++++++|+++.. ++.|.+||+..... +..+.
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~ 271 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP 271 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe
Confidence 876 89999999973 22 23333211 122346889999999999864 68999999864332 22222
Q ss_pred cCCCCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCC
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHE 315 (643)
Q Consensus 280 ~~~~~I~~l~~sp~~~~~l~sgs-~dg~I~iwd~~~~ 315 (643)
. ......+++++ ++++|++++ .+++|.+|+++..
T Consensus 272 ~-~~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~ 306 (330)
T PRK11028 272 T-ETQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGE 306 (330)
T ss_pred c-cccCCceEECC-CCCEEEEEEccCCcEEEEEEcCC
Confidence 2 23456889999 566666555 5899999988643
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.8e-17 Score=167.22 Aligned_cols=257 Identities=18% Similarity=0.287 Sum_probs=182.4
Q ss_pred EcCCCCEEEE--EECCCcEEEEeCCC-Cce----EEEEccCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc----
Q 006497 80 WTPTGRRLIT--GSQSGEFTLWNGQS-FNF----EMILQAHDHAIRSMVWSH-NDNWMVSGDDGGAIKYWQNNMNN---- 147 (643)
Q Consensus 80 ~spdg~~L~t--gs~dg~I~iwd~~~-~~~----~~~l~~h~~~V~~l~~s~-~~~~L~sg~~dg~V~iwd~~~~~---- 147 (643)
|+.+.+++|+ .+..|.|-||+++. +++ +-.+ .....|+++.|.| |...|+++++||.|++|.+..+.
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~ 665 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN 665 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence 3444555554 45578999999764 221 1112 1356799999998 66899999999999999876543
Q ss_pred ---eEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 148 ---VKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 148 ---~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
....+..|.+.|++|.|++-. +.|++++.|.+|++||+.+.+....+.+|.+.|..++|++||+.+++.+.||+|+
T Consensus 666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r 745 (1012)
T KOG1445|consen 666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR 745 (1012)
T ss_pred cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence 345668899999999999843 6789999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCce-eEEeccC-CCcEEEEEEcCCCCEEEEEECC----CcEEEEECCCCe--EEEEeecCCC-CeEEEEEecCC
Q 006497 224 LWDAKSGRE-LCSFHGH-KNMVLCVKWNQNGNWVLTASKD----QIIKLYDIRAMK--ELESFRGHRK-DVTALAWHPFH 294 (643)
Q Consensus 224 iwD~~~~~~-~~~~~~~-~~~i~~l~~sp~g~~l~s~s~d----g~I~iwd~~~~~--~~~~~~~~~~-~I~~l~~sp~~ 294 (643)
+|+-++++. ++.-++- ...--.|.|.-||++|++.+.| ..|.+||..+.. .+.+...... .+.--.+..+.
T Consensus 746 Vy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds 825 (1012)
T KOG1445|consen 746 VYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDS 825 (1012)
T ss_pred EeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCC
Confidence 999987643 2222211 1233457787899998887755 468889876533 2322221111 11222344445
Q ss_pred CCEEEEEeCCCcEEEEECCCCcceEEEecccCcce--EEEEEcCC
Q 006497 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV--WDLAWHPI 337 (643)
Q Consensus 295 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~s~d 337 (643)
+-+|++|-.|..|++|.+-.....+.-...|...+ ..++|...
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~hqGl~fl~K 870 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGHQGLAFLQK 870 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCceeeecccccCCCcccceeeecc
Confidence 67888999999999999866655444433333322 34555543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.6e-17 Score=162.00 Aligned_cols=194 Identities=19% Similarity=0.257 Sum_probs=158.1
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec--
Q 006497 76 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-- 153 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~-- 153 (643)
.+++|+.||..|++++.||++|||+..+...+.....|.+.|.++.|++|+++|++.+.| ..+||+++++..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888999999999999999999999999 89999999996665543
Q ss_pred CCCCCeEEEEEecCC---CE--EEEEeCCCcEEEEECCCCee-----eeEeeccCCCeEEEEEcCCCCEEEEEECCCcEE
Q 006497 154 AHKESVRDLSFCRTD---LK--FCSCSDDTTVKVWDFARCQE-----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~---~~--l~s~s~dg~I~iwdl~~~~~-----~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~ 223 (643)
.....+..+.|+.|+ .+ ++.....+.|+.||+...+. .++.......|++++++.||++++.|+.||.|.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa 306 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA 306 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence 334456777888776 33 33334456777777643322 111222334799999999999999999999999
Q ss_pred EEECCCCceeEEe-ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 224 LWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270 (643)
Q Consensus 224 iwD~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 270 (643)
|++..+.+.++.+ +.|...|+.+.|+||.+++++.+.|..+.|..+.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999988877665 5688899999999999999999888888887764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.3e-16 Score=160.06 Aligned_cols=218 Identities=13% Similarity=0.194 Sum_probs=158.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceE----EEEccCCCCEEEEEEc-----CCCCEEEEEeCCCcEEEEECC
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE----MILQAHDHAIRSMVWS-----HNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~----~~l~~h~~~V~~l~~s-----~~~~~L~sg~~dg~V~iwd~~ 144 (643)
.++...++-.|++|+..-. ..+++|+...+..+ ..........+|-+|+ +++--|+++-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 3445555666777766543 36888886632211 1111112223344442 345567788888999998865
Q ss_pred CCceEEee----cCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCC--------------Cee--------------e
Q 006497 145 MNNVKANK----SAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFAR--------------CQE--------------E 191 (643)
Q Consensus 145 ~~~~~~~~----~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~--------------~~~--------------~ 191 (643)
..+..+.+ ...+..|+|+.|.+.+ ..++++-.+|.+++||.+. ... +
T Consensus 204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv 283 (636)
T KOG2394|consen 204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPV 283 (636)
T ss_pred hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCcc
Confidence 53322211 2345789999999855 5567777899999997631 111 1
Q ss_pred eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
..+...+..|+.++|++|+++||+.+.||.+||||..+.+.+..++..-+...|++|+|||+||++|++|..|.||.+..
T Consensus 284 ~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 284 ARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred ceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 11122345788999999999999999999999999999888877777778899999999999999999999999999999
Q ss_pred CeEEEEeecCCCCeEEEEEec
Q 006497 272 MKELESFRGHRKDVTALAWHP 292 (643)
Q Consensus 272 ~~~~~~~~~~~~~I~~l~~sp 292 (643)
.+.+..-.+|+..|+.|+|+|
T Consensus 364 rRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 364 RRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEeccccccceeeEeecc
Confidence 999999999999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-16 Score=153.38 Aligned_cols=249 Identities=18% Similarity=0.194 Sum_probs=186.6
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC------ceEEee-cCCCCCeEEEEEecCCCEEEEEeCCCc
Q 006497 107 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN------NVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTT 179 (643)
Q Consensus 107 ~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~------~~~~~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~ 179 (643)
.+.+.+|.+.|++|.|+.++++|++|+.|..++||+++.. +.+... ..|...|.||+|...+++|++|..+++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 3446689999999999999999999999999999987532 233333 346689999999999999999999999
Q ss_pred EEEEECCCCeeeeEeec--cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-e--eEEeccCCCcEEEEEEcC-CCC
Q 006497 180 VKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-E--LCSFHGHKNMVLCVKWNQ-NGN 253 (643)
Q Consensus 180 I~iwdl~~~~~~~~~~~--~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-~--~~~~~~~~~~i~~l~~sp-~g~ 253 (643)
|.+.|+++.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||++... . +..+.........+.|+| .-.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 99999999888777653 23489999999999999999999999999998654 2 222334556678899999 456
Q ss_pred EEEEEECCCcEEEEECCCCeE-EEEe------ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccC
Q 006497 254 WVLTASKDQIIKLYDIRAMKE-LESF------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 326 (643)
Q Consensus 254 ~l~s~s~dg~I~iwd~~~~~~-~~~~------~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 326 (643)
+|++.+..+-+.|||++.... +..+ ......-..+.|++ +++.|++--....-.+||+-...+.+... .|.
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N 286 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKS-DHN 286 (609)
T ss_pred eEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEec-cCC
Confidence 788899999999999986433 2211 11122335678999 67777766655566677875543322222 222
Q ss_pred -------cceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 327 -------NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 327 -------~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
..+.+++|.-|. .+++|+.+-.|++|++-..
T Consensus 287 ~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 287 PNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred CCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCC
Confidence 246778887554 4999999999999998543
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-15 Score=155.20 Aligned_cols=285 Identities=15% Similarity=0.249 Sum_probs=211.2
Q ss_pred CCCCCeEEEEEcCCCCEEE-EEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 006497 70 KNRCSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~ 148 (643)
+|...-+.|..++||+||+ +|...-.|++||+.+..+...-......|.-..++.|-..++.-..|.+|.+........
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 4667788999999999865 677788999999987654433222233455455555555666667777777653221111
Q ss_pred EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 149 KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 149 ~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~ 228 (643)
... ....-.+++++.-..-|++++....|+-++++.+..+.-+......+++|..++...+|++|+.||.|.+||.+
T Consensus 129 ~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 129 RTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eee---cCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 111 12233456666544456666667789999999999999888888899999999999999999999999999999
Q ss_pred CCceeEEecc------CC-----CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCC-
Q 006497 229 SGRELCSFHG------HK-----NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE- 295 (643)
Q Consensus 229 ~~~~~~~~~~------~~-----~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~- 295 (643)
+...+.++.. +. ..|+++.|+.+|-.+++|+.+|.|.|||+++.+.+..-. .....|..+.|.+.+.
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 8776665542 22 249999999999999999999999999999988765543 3455789999976433
Q ss_pred CEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 296 EYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
+.|++. ....++|||-.+++....+... ..++.+|+-+++.+++++-++..+..|=+...+.
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt--~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASIEPT--SDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeecccc--CCcCceeeecCCceEEEecCCCcceeEEccccCC
Confidence 445544 4568999999888877776653 3599999999999999999999888887765554
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=161.39 Aligned_cols=208 Identities=22% Similarity=0.358 Sum_probs=172.5
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEE
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSF 164 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~ 164 (643)
..|+.++.||.+.|.+ +.++..+.+..|.++|.|-.|++||.-|+++++||.|++|.- ++-+..++......|.|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 5688889999999997 557788889999999999999999999999999999999974 45555555667789999999
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEE
Q 006497 165 CRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 165 s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~ 244 (643)
.++.+.++.|. .+.+.|=-+.-...+...+.|.+-|.+++|++..++|++|++|-..+|||.. |..+..-..|+..|+
T Consensus 154 ~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~IT 231 (737)
T KOG1524|consen 154 APNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAIT 231 (737)
T ss_pred CCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcccee
Confidence 99988776654 4677887887777888899999999999999999999999999999999976 667777778999999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 006497 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iw 310 (643)
+++|+|+ +.+++++. +++++ -+...+.|..++|++ ++..+++|+..|.+.+-
T Consensus 232 Sva~npd-~~~~v~S~-nt~R~-----------~~p~~GSifnlsWS~-DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 232 SVAFNPE-KDYLLWSY-NTARF-----------SSPRVGSIFNLSWSA-DGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeeccc-cceeeeee-eeeee-----------cCCCccceEEEEEcC-CCceeeccccCceEEEe
Confidence 9999999 55555553 23331 123457799999999 89999999988877543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=166.84 Aligned_cols=220 Identities=14% Similarity=0.154 Sum_probs=160.6
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEE
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYW 141 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~-~dg~V~iw 141 (643)
..+..|+..|.+.+|+|||++|++++.+ ..|++||+.+++.... ....+...+++|++|+++|+++. .+|.+.||
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 275 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIY 275 (429)
T ss_pred eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEE
Confidence 3456778889999999999999987654 3699999988754322 22233445789999999888764 67876655
Q ss_pred --ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe-eeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 142 --QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 142 --d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s-~dg~I~iwdl~~~~-~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
|+++++.. .+..+...+.+.+|++|++.|+.++ .++...||+++... ....+ .+.. .++.|++|+++|++.+
T Consensus 276 ~~d~~~~~~~-~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 276 VMGANGGTPS-QLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred EEECCCCCeE-eeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEc
Confidence 66655543 4455667788999999999877655 57888888764322 22222 2332 4678999999998887
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC--CCCeEEEEeecCCCCeEEEEEecC
Q 006497 218 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI--RAMKELESFRGHRKDVTALAWHPF 293 (643)
Q Consensus 218 ~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~--~~~~~~~~~~~~~~~I~~l~~sp~ 293 (643)
.++ |.+||+.+++........ ...++.|+||+++|++++.++.+.+|++ .+++.+..+..+...+..++|+|.
T Consensus 352 ~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 352 GDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 765 666999988754332222 3467889999999999999998888876 357788888888888999999983
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-15 Score=163.94 Aligned_cols=242 Identities=18% Similarity=0.275 Sum_probs=182.9
Q ss_pred CCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCCCce--EE----EEccCCCCEEEEEEcCCC--CEEEEEeCCCcEEEEE
Q 006497 72 RCSINRVLWTPTG-RRLITGSQSGEFTLWNGQSFNF--EM----ILQAHDHAIRSMVWSHND--NWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 72 ~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~~~~--~~----~l~~h~~~V~~l~~s~~~--~~L~sg~~dg~V~iwd 142 (643)
...|+|++|++.. .+||.|+.+|.|.+||+..+.. .. ....|...|+.+.|..+. .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 5689999999965 6778888999999999887654 22 233588999999997754 4499999999999998
Q ss_pred CCCCceEE------eec------CCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECC---CCe-----eeeEeeccCCCe
Q 006497 143 NNMNNVKA------NKS------AHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFA---RCQ-----EERSLTGHGWDV 201 (643)
Q Consensus 143 ~~~~~~~~------~~~------~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~---~~~-----~~~~~~~~~~~V 201 (643)
++.-.... ... .....+++++|.+.. ..+++|+++|.|..-+-. ... ....+..|.+.|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 76432210 001 223457889998744 668999999998873332 211 122445678899
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECC-CCceeEEeccCCCcEEEEEEcCCC-CEEEEEECCCcEEEEECCCC--eEEEE
Q 006497 202 KSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHKNMVLCVKWNQNG-NWVLTASKDQIIKLYDIRAM--KELES 277 (643)
Q Consensus 202 ~~l~~sp~~~~l~sgs~dg~I~iwD~~-~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~dg~I~iwd~~~~--~~~~~ 277 (643)
+++.++|-...++..+.|-+|+||... ....+..+..+...|++++||+.. ..|+++..||.|.|||+... +.+.+
T Consensus 402 ~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s 481 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS 481 (555)
T ss_pred EeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc
Confidence 999999977766666669999999988 667777888788889999999954 56778888999999999643 34555
Q ss_pred eecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 006497 278 FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 278 ~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~ 314 (643)
........+.+.|++ .+.+|++|+..|++.+|++..
T Consensus 482 ~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 482 QKVCSPALTRVRWSP-NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccccccccceeecCC-CCcEEEEecCCCcEEEEEcCc
Confidence 554556677788887 899999999999999999953
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-15 Score=166.62 Aligned_cols=256 Identities=18% Similarity=0.255 Sum_probs=187.9
Q ss_pred CCceEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC-------ceEEeecCCCCCeEEEEEecCCCEEEEE
Q 006497 103 SFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN-------NVKANKSAHKESVRDLSFCRTDLKFCSC 174 (643)
Q Consensus 103 ~~~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~~~~-------~~~~~~~~~~~~I~~l~~s~d~~~l~s~ 174 (643)
.|..+..+..|...|..++.+.+. .++++|+.||+|++||...- +...++......+.++..+..+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 366788888899999999988765 89999999999999996532 2333444567889999999999999999
Q ss_pred eCCCcEEEEECCCCee-------eeEeec--cCCCeEEEEEcC-CCC-EEEEEECCCcEEEEECCCCceeEEec--cCCC
Q 006497 175 SDDTTVKVWDFARCQE-------ERSLTG--HGWDVKSVDWHP-TKS-LLVSGGKDSLVKLWDAKSGRELCSFH--GHKN 241 (643)
Q Consensus 175 s~dg~I~iwdl~~~~~-------~~~~~~--~~~~V~~l~~sp-~~~-~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~ 241 (643)
+.||.|++.+++..+. .+.... ...-|..-++.. +.. .|+.+...+.|..||+++.....+++ ...+
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence 9999999999976211 111111 122233333433 233 78888889999999999877666554 3457
Q ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCC--CEEEEE-e-CCCcEEEEECCCCc
Q 006497 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHE--EYFVSG-S-LDGSIFHWLVGHET 316 (643)
Q Consensus 242 ~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~--~~l~sg-s-~dg~I~iwd~~~~~ 316 (643)
.|++++.++.++++++|+..|.+.+||+|-...+..+. .+...|..+..++... ...+++ + ..+.|.+|++.++.
T Consensus 1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 89999999999999999999999999999888887776 3456788887776443 444444 4 57899999998876
Q ss_pred ceEEEecc------------------cCcceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 317 PQVEIHNV------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 317 ~~~~~~~~------------------h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
....+... +.......++...+..+.+|+.|..|+.||....
T Consensus 1277 ~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1277 RQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 55444332 1112233344545678999999999999998654
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=146.02 Aligned_cols=236 Identities=11% Similarity=0.199 Sum_probs=184.5
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC-
Q 006497 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN---VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF- 185 (643)
Q Consensus 110 l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~---~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl- 185 (643)
+......|+|.+|+.|...+|++..+..|.||...... ...+++.|...|+.++|++..+.|++|+.|..-+||..
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33346789999999999999999999999999876544 66778899999999999999999999999999999998
Q ss_pred CCC--eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE----EeccCCCcEEEEEEcCCCCEEEEEE
Q 006497 186 ARC--QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC----SFHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 186 ~~~--~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~----~~~~~~~~i~~l~~sp~g~~l~s~s 259 (643)
..+ +....+..+...++++.|+|.++.|++|+....|.||-++..+.-. .-+.+++.|++++|++++-+|++|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 333 3445566688899999999999999999999999999887544321 2234667899999999999999999
Q ss_pred CCCcEEEEECC-----C-------------CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEE
Q 006497 260 KDQIIKLYDIR-----A-------------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 260 ~dg~I~iwd~~-----~-------------~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 321 (643)
.|+..+||..- . ++.+.++....+.|..+.|++ .++.|+-.+.|..|.+-|..........
T Consensus 166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCchhccc
Confidence 99999999642 1 223444555667899999999 7899999999999999998666533332
Q ss_pred ecccCcceEEEEEcCCCCEEEEEECC
Q 006497 322 HNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 322 ~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
.....-+..++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 222235777777765443 4444444
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=145.67 Aligned_cols=273 Identities=12% Similarity=0.260 Sum_probs=196.3
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEeecCC
Q 006497 77 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 155 (643)
Q Consensus 77 ~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~-sg~~dg~V~iwd~~~~~~~~~~~~~ 155 (643)
-++||++|++||+++.- .+.|-|.++.+..+.+.. -+.|.-+.|..|..+++ ....|+.|.+|++...+-...+...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccC
Confidence 36899999999999865 788999888776555443 45677789988876655 4567889999999998888888888
Q ss_pred CCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC---------------
Q 006497 156 KESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------- 219 (643)
Q Consensus 156 ~~~I~~l~~s~d~~~l-~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d--------------- 219 (643)
...+..++|+||++.| .+...|-.|.||.+.+.+.... .-.+..+..++|++|+++.+.++.-
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 8999999999999665 5566689999999988655432 2234456888888888877766532
Q ss_pred ---------------------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 006497 220 ---------------------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 278 (643)
Q Consensus 220 ---------------------g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 278 (643)
..+.+||.--...+..++ ..-.+..++|+|.+++|++|+.|+.+||.+--+.+...+|
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123334322111222221 2245889999999999999999999998765443322111
Q ss_pred ------------------------------------------------------------e------cCCCCeEEEEEec
Q 006497 279 ------------------------------------------------------------R------GHRKDVTALAWHP 292 (643)
Q Consensus 279 ------------------------------------------------------------~------~~~~~I~~l~~sp 292 (643)
+ .....+.-++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 0112355688998
Q ss_pred CCCCEEEEEeCC--CcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 293 FHEEYFVSGSLD--GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 293 ~~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
++.++++-.+. +.+-+||+++.+....+.. ...|....|+|....|+.+.....+++|...
T Consensus 329 -Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 329 -DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 77777776543 5789999977665444444 5589999999999888888888889999764
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-14 Score=142.79 Aligned_cols=280 Identities=15% Similarity=0.245 Sum_probs=191.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc-cCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCC---
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNMN--- 146 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~~~~--- 146 (643)
+..+..++|++.-..+|++..|..|+|||-+. +....++ .....|+|++|-|.+ +.|++|+..| |.||..+..
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 45688999999877889999999999999776 4444444 345689999999964 5777777755 999975421
Q ss_pred -ce----------EEeecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEE
Q 006497 147 -NV----------KANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 147 -~~----------~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~ 214 (643)
.. +....+| ..|+++.|.+|+..+++++. |..|.|||..++..+.......+.++-+.|+||+.+|+
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 11 1111233 68999999999999998875 67899999999877766655566789999999999999
Q ss_pred EEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC------------eE---EEEe-
Q 006497 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------------KE---LESF- 278 (643)
Q Consensus 215 sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~------------~~---~~~~- 278 (643)
+++-|+..++|+..............+.|...+|+|+|++|+..+. +.-+||.+.-. +. +..+
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred EecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 9999999999965433322233334458999999999998776553 23344443210 01 1111
Q ss_pred ----ec----CCCCeEEEEEecCCCCEEEEEeCCC--------cEEEEECCCCcceEEEecc--cCcceEEEEEcC---C
Q 006497 279 ----RG----HRKDVTALAWHPFHEEYFVSGSLDG--------SIFHWLVGHETPQVEIHNV--HDNTVWDLAWHP---I 337 (643)
Q Consensus 279 ----~~----~~~~I~~l~~sp~~~~~l~sgs~dg--------~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~---d 337 (643)
.. -.+.+.+++|+| .+++|++.-..+ .|.+||.+..-.......+ ....-..|+|++ +
T Consensus 334 e~ti~ag~~l~cgeaq~lawDp-sGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~ 412 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDP-SGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNE 412 (445)
T ss_pred hhhhhcCcccccCccceeeECC-CCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccC
Confidence 01 145688999999 788887765543 3667776554333222111 111233445544 5
Q ss_pred CCEEEEEECCCeEEEEecC
Q 006497 338 GYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~ 356 (643)
+.+|..+=+.|.+.-|++.
T Consensus 413 g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 413 GRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CcEEEEEeccCceEeeeeE
Confidence 6777777788888888763
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-14 Score=150.03 Aligned_cols=285 Identities=11% Similarity=0.119 Sum_probs=187.0
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEeec
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~-~dg~V~iwd~~~~~~~~~~~ 153 (643)
-..++|++|++++++++.||.|.++|+.+.+.+.+++... ...++++++||+++++++ .++.|.|+|.++.+.+..+.
T Consensus 39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~ 117 (369)
T PF02239_consen 39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP 117 (369)
T ss_dssp EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence 4457899999999999999999999999999999987644 567899999999998775 68999999999998887764
Q ss_pred C-------CCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeee-EeeccCCCeEEEEEcCCCCEEEEE-ECCCcEE
Q 006497 154 A-------HKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVK 223 (643)
Q Consensus 154 ~-------~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~-~~~~~~~~V~~l~~sp~~~~l~sg-s~dg~I~ 223 (643)
. ....+..+..++....++..-. .+.|.+.|....+.+. .............|++++++++++ ..+..|.
T Consensus 118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~ 197 (369)
T PF02239_consen 118 TGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIA 197 (369)
T ss_dssp --EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEE
T ss_pred cccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeE
Confidence 3 2346778888888876665555 4888888986654332 222345567889999999987665 5567899
Q ss_pred EEECCCCceeEEecc----CCCcEEEE-------EEc--CCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEE
Q 006497 224 LWDAKSGRELCSFHG----HKNMVLCV-------KWN--QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290 (643)
Q Consensus 224 iwD~~~~~~~~~~~~----~~~~i~~l-------~~s--p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~ 290 (643)
++|.++++.+..+.. |...+..+ .|. ..+...++.-....+.+||..+++.++++...... ..+..
T Consensus 198 viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~t 276 (369)
T PF02239_consen 198 VIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKT 276 (369)
T ss_dssp EEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE-
T ss_pred EEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeec
Confidence 999999887766532 22222222 122 12233323233346778999999999999977666 88888
Q ss_pred ecCCCCEEEEE----eCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEEC--CCeEEEEecCCCCCcc
Q 006497 291 HPFHEEYFVSG----SLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN--DHTTKFWCRNRPGDTA 362 (643)
Q Consensus 291 sp~~~~~l~sg----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~--Dg~V~iWd~~~~~~~~ 362 (643)
+| +++++++. ..+++|.++|.++.+....+.......+..+.|++||+.+..+.. ++.|.+||..+.+...
T Consensus 277 hP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 277 HP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp -T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 99 77787777 455899999998875555544333445999999999987665544 3379999986644433
|
... |
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.1e-15 Score=162.39 Aligned_cols=242 Identities=18% Similarity=0.267 Sum_probs=180.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCC---CCCeEEEEEec--CCCEEEEEeCCCcEEEEECCC----
Q 006497 117 IRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH---KESVRDLSFCR--TDLKFCSCSDDTTVKVWDFAR---- 187 (643)
Q Consensus 117 V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~---~~~I~~l~~s~--d~~~l~s~s~dg~I~iwdl~~---- 187 (643)
-..+.|++-...+++++..-.|+|||.+.++....+..+ ...|+.+.+.. |...+++++.||.|+||+--.
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~ 1146 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWK 1146 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccC
Confidence 455778887888999998889999999999888777543 45788888875 446789999999999997522
Q ss_pred -CeeeeEeec-------cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEec-cCCCcEEEEEEcC-CCCEEEE
Q 006497 188 -CQEERSLTG-------HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-GHKNMVLCVKWNQ-NGNWVLT 257 (643)
Q Consensus 188 -~~~~~~~~~-------~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~-~~~~~i~~l~~sp-~g~~l~s 257 (643)
.+.+..... ..+.-.-++|.....+|+++++-..|+|||+....++..+. +....|+++.-+- .|+.|++
T Consensus 1147 ~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1147 KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE
Confidence 222222221 11111456787777777777778899999999877777664 3444567765544 5699999
Q ss_pred EECCCcEEEEECCCCe---EEEEeecCCCC--eEEEEEecCCCCEEEEEeCCCcEEEEECCCC-cceEEEecccC--c-c
Q 006497 258 ASKDQIIKLYDIRAMK---ELESFRGHRKD--VTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-TPQVEIHNVHD--N-T 328 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~---~~~~~~~~~~~--I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~h~--~-~ 328 (643)
|..||.|++||.|.-. .+..++.|... |..+.+.+.+-..|++|+.||.|++||++.. .........|. + .
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 9999999999998643 46777888877 9999998855557999999999999999874 22222222222 2 5
Q ss_pred eEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 006497 329 VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 329 V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~ 359 (643)
++++..+.+..+||+|+. +.|+||++....
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecChhh
Confidence 999999999999999998 999999986533
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-17 Score=176.31 Aligned_cols=242 Identities=19% Similarity=0.326 Sum_probs=192.0
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
+.++.+.+|..+|+|+.|...|.++++|++|..|+||..++..+.....+|.+.|++++.+.++..+++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 34556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE---e-ccCCCcEEEEEEcCCCCEEEEEEC
Q 006497 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS---F-HGHKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 185 l~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~---~-~~~~~~i~~l~~sp~g~~l~s~s~ 260 (643)
+..+..+..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+.. + ...+..+.++.|..++..+++++.
T Consensus 261 l~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~ 336 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSR 336 (1113)
T ss_pred cCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccC
Confidence 99999999999999999999999854 778899999999982111111 0 113355778888888889999999
Q ss_pred CCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCC-
Q 006497 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY- 339 (643)
Q Consensus 261 dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~- 339 (643)
|+.-..|.+..... +...+.-+..+.+-..+.++.-.+-.+++|++.++.. .....+|...+..+.+++-+.
T Consensus 337 d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 337 DGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred CcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcH
Confidence 99988887653211 1122222222222335666677788899999866644 344557889999999999664
Q ss_pred EEEEEECCCeEEEEecCC
Q 006497 340 LLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 340 ~L~sgs~Dg~V~iWd~~~ 357 (643)
...+++.||...|||+-.
T Consensus 410 i~msag~dgst~iwdi~e 427 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWE 427 (1113)
T ss_pred hhhhccCCCceEeeeccc
Confidence 456789999999999954
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=161.56 Aligned_cols=242 Identities=16% Similarity=0.250 Sum_probs=167.1
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee-cCCCCCeEEEEEec--CCCEEEEEeCCCcEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCR--TDLKFCSCSDDTTVK 181 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~-~~~~~~I~~l~~s~--d~~~l~s~s~dg~I~ 181 (643)
...+++.+|.+.|+|++|+.+|.+|++|++|-.+.|||.-..+.+..+ .+|...|.++.|.| +++.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 356778899999999999999999999999999999998777666555 68999999999998 457789999999999
Q ss_pred EEECCCC----------eeeeEeeccCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCcee----------EEeccCC
Q 006497 182 VWDFARC----------QEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGREL----------CSFHGHK 240 (643)
Q Consensus 182 iwdl~~~----------~~~~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~----------~~~~~~~ 240 (643)
++|+... +....+..|...|..|+..+++ +.+.++++||+|+-||++..... ..+....
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 9999742 2334456788899999999988 78999999999999999863211 1111222
Q ss_pred CcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceE
Q 006497 241 NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 319 (643)
Q Consensus 241 ~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~ 319 (643)
-...|+.++| +..+|++|+.|-..++||.+.. +..+...... .++| - -.++.|+.|.-...+...
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~--lks~~s~~~~----~~~p-p-------~~~~cv~yf~p~hlkn~~ 266 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRV--LKSFRSDGTM----NTCP-P-------KDCRCVRYFSPGHLKNSQ 266 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhh--ccCCCCCccc----cCCC-C-------cccchhheecCccccCcc
Confidence 3568899999 5578999999999999996532 1122111000 0000 0 011222222211110000
Q ss_pred EEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 320 EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 320 ~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
.....-...++-+.|+|+|.-|++.-..-.|+++|++....
T Consensus 267 gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 267 GNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred cccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 00000012467789999987666655566799999976544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.5e-17 Score=161.74 Aligned_cols=233 Identities=18% Similarity=0.255 Sum_probs=200.4
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
+..-+.+.++.+|++|+.++..|.|..+|+.++++...+. ....|.++.|..+..+||++ ....++|||- .+.++..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHC 205 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEee
Confidence 3445678999999999999999999999999999888764 45779999999888877765 5678999994 5667777
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~ 273 (643)
++.+ ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-+|-+..+-+|..+|+|.+|.-.+.+
T Consensus 206 lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 7754 479999999998999999999999999999999999998888899999999988899999999999999999999
Q ss_pred EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEE
Q 006497 274 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 274 ~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iW 353 (643)
.+..+..|.+.|.+|++.+ ++.+++|.+.|..|+|||++....+..+.. ......+++|..| +++++....|.||
T Consensus 285 PLvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw 359 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIW 359 (545)
T ss_pred hHHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeee
Confidence 9999999999999999999 899999999999999999998876666554 3467788888555 4445566789999
Q ss_pred ec
Q 006497 354 CR 355 (643)
Q Consensus 354 d~ 355 (643)
.-
T Consensus 360 ~d 361 (545)
T KOG1272|consen 360 KD 361 (545)
T ss_pred hh
Confidence 64
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=136.51 Aligned_cols=237 Identities=13% Similarity=0.163 Sum_probs=172.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCC--CeEEEEEecCCCEEEEE-eC------CCcEEEEEC
Q 006497 115 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE--SVRDLSFCRTDLKFCSC-SD------DTTVKVWDF 185 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~--~I~~l~~s~d~~~l~s~-s~------dg~I~iwdl 185 (643)
....+++|+.|...++++.++| .+||+.+--+.......+.+ .+..+-| ..++|+.. +. -++|.|||-
T Consensus 6 ~~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 3455699999999999998887 89998775433222222222 2333333 33454433 32 258999997
Q ss_pred CCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCceeEEeccCC--CcEEEEEEcCCCCEEEE-EECC
Q 006497 186 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGRELCSFHGHK--NMVLCVKWNQNGNWVLT-ASKD 261 (643)
Q Consensus 186 ~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~-~~~~~~~~~~~~--~~i~~l~~sp~g~~l~s-~s~d 261 (643)
...+++.++. ....|.+|.+..+ .|++.- ++.|+||... +-+.++.++... ..+.+++-..+..+||. |..-
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 7777777776 5678999999754 455554 5789999987 456666664322 33444444434455554 3466
Q ss_pred CcEEEEECCCCeE--EEEeecCCCCeEEEEEecCCCCEEEEEeCCCc-EEEEECCCCcceEEEeccc-CcceEEEEEcCC
Q 006497 262 QIIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-IFHWLVGHETPQVEIHNVH-DNTVWDLAWHPI 337 (643)
Q Consensus 262 g~I~iwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~d 337 (643)
|.|+|.|+...+. ...+..|...|.|++.+- .+.++|++|..|+ |+|||..++..+.++..+- ...|.+++||++
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 8999999987665 477889999999999998 8999999999997 6999999999888876653 457999999999
Q ss_pred CCEEEEEECCCeEEEEecCCCC
Q 006497 338 GYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~~~~ 359 (643)
..+|+++|+.|+|+||.+....
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCC
Confidence 9999999999999999996543
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.5e-14 Score=137.29 Aligned_cols=273 Identities=14% Similarity=0.265 Sum_probs=193.7
Q ss_pred CeEEEEEcCCCCEEEEE-ECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEe
Q 006497 74 SINRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~-~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
.|.-|.|..|..+++++ ..++.|.+|++..-+....+......+..++|+|||+ +|.+...|-.|.||.+.+.+....
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 56778888888776655 6688999999998888888888889999999999996 455667789999999988765543
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeC------------------------------------CCcEEEEECCCCeeeeEee
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSD------------------------------------DTTVKVWDFARCQEERSLT 195 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~------------------------------------dg~I~iwdl~~~~~~~~~~ 195 (643)
...+..+..++|++|+++.+.++. ++.+.|||.--.-.+..+.
T Consensus 130 -~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe 208 (447)
T KOG4497|consen 130 -PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE 208 (447)
T ss_pred -cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee
Confidence 334555688889999887666543 2234445432111112222
Q ss_pred ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE-----------------------------------------
Q 006497 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC----------------------------------------- 234 (643)
Q Consensus 196 ~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~----------------------------------------- 234 (643)
..-.+..++|+|.+++|++|+.|+.+||.+--+.+...
T Consensus 209 -~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~ 287 (447)
T KOG4497|consen 209 -RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH 287 (447)
T ss_pred -eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence 23468899999999999999999998876532211100
Q ss_pred -------------------Eec------cCCCcEEEEEEcCCCCEEEEEECC--CcEEEEECCCCeEEEEeecCCCCeEE
Q 006497 235 -------------------SFH------GHKNMVLCVKWNQNGNWVLTASKD--QIIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 235 -------------------~~~------~~~~~i~~l~~sp~g~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
.++ ...-.+.-++|++|..++++-.+. +.+.+||+++.+....+ .....|..
T Consensus 288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-iQk~pira 366 (447)
T KOG4497|consen 288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-IQKHPIRA 366 (447)
T ss_pred ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-hhccceeE
Confidence 000 011235679999999988876533 57999999976654443 36788999
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 288 l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
..|+| +...|+.+....++++|....... +... .....|.+++|.-+|..++..++|.....
T Consensus 367 f~WdP-~~prL~vctg~srLY~W~psg~~~-V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 367 FEWDP-GRPRLVVCTGKSRLYFWAPSGPRV-VGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred EEeCC-CCceEEEEcCCceEEEEcCCCceE-EecC-CCCceeeeEEecCCCcEEEEEcCCceEEE
Confidence 99999 666667666677899998755322 2222 23467999999999999999999975544
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-14 Score=143.52 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=196.0
Q ss_pred CCCCCeEEEEEcCCCC--EEEEEECCCcEEEEeCCCCceEEEE------ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 70 KNRCSINRVLWTPTGR--RLITGSQSGEFTLWNGQSFNFEMIL------QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~--~L~tgs~dg~I~iwd~~~~~~~~~l------~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
.-...|+.++|.-|++ .|+..+.|..+..+......+...+ ......|..++.. +..|++|..+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3456788888887764 3444446667777776665544332 3345667776654 4578888999999999
Q ss_pred ECCCCc----eEEeecCCCCCeEEEEEecCCCE-EEEEeCC--CcEEEEECCCCeeeeEeeccC---------CCeEEEE
Q 006497 142 QNNMNN----VKANKSAHKESVRDLSFCRTDLK-FCSCSDD--TTVKVWDFARCQEERSLTGHG---------WDVKSVD 205 (643)
Q Consensus 142 d~~~~~----~~~~~~~~~~~I~~l~~s~d~~~-l~s~s~d--g~I~iwdl~~~~~~~~~~~~~---------~~V~~l~ 205 (643)
..+.+. .+..+ .....+..+.-++...+ +++|+.. ..++|||++..+.+..-+.-. -.++++.
T Consensus 131 ~~k~~d~hss~l~~l-a~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKL-ATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceee-ecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 887433 11222 22345556655554444 5568888 899999999875554433211 1356788
Q ss_pred EcCC--CCEEEEEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEE-eecC
Q 006497 206 WHPT--KSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES-FRGH 281 (643)
Q Consensus 206 ~sp~--~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~ 281 (643)
|.+. ...|++++.-+.|++||.+.+ +.+..+.-....|+++...+++++|+++..-+.+..||++.++.+.. +++.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence 8877 789999999999999999965 56778877788999999999999999999999999999999999877 8889
Q ss_pred CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC
Q 006497 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 282 ~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 337 (643)
.+.|++|..++ ...+|++++.|..|+|+|+.+.+.+...+. ...+++|.+..+
T Consensus 290 tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvYv--Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 290 TGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVYV--KSRLTFILLRDD 342 (412)
T ss_pred cCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhhh--hccccEEEecCC
Confidence 99999999999 789999999999999999988766655543 456777777654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-14 Score=140.68 Aligned_cols=241 Identities=20% Similarity=0.370 Sum_probs=171.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc-----eEEEEccCC------------CCEEEEEEcCCC--CEEEEE
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVSG 132 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~s~~~--~~L~sg 132 (643)
.+-|.+|.|..+|.+||||..+|.|.+|.-+... ....++.|+ ..|+.+.|..++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4569999999999999999999999999644322 333344443 468889998875 467778
Q ss_pred eCCCcEEEEECCCCceEE-----------------------------------e-ecCCCCCeEEEEEecCCCEEEEEeC
Q 006497 133 DDGGAIKYWQNNMNNVKA-----------------------------------N-KSAHKESVRDLSFCRTDLKFCSCSD 176 (643)
Q Consensus 133 ~~dg~V~iwd~~~~~~~~-----------------------------------~-~~~~~~~I~~l~~s~d~~~l~s~s~ 176 (643)
+.|.+|++|.+....... . -..|.--|.+|.++.|...++++ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 899999999764322111 0 12577779999999999888876 4
Q ss_pred CCcEEEEECCCCee---eeEeec-----cCCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCcee----EEe-------
Q 006497 177 DTTVKVWDFARCQE---ERSLTG-----HGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGREL----CSF------- 236 (643)
Q Consensus 177 dg~I~iwdl~~~~~---~~~~~~-----~~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~~~----~~~------- 236 (643)
|-.|.+|+++-... +..++. ...-|++..|+|. .+.++..+..|+|++.|+|..... ..+
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 78899999864332 222222 2245788899985 468888899999999999843211 111
Q ss_pred -----ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC-CCCeEEEEeecCCC------------C---eEEEEEecCCC
Q 006497 237 -----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI-RAMKELESFRGHRK------------D---VTALAWHPFHE 295 (643)
Q Consensus 237 -----~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~-~~~~~~~~~~~~~~------------~---I~~l~~sp~~~ 295 (643)
..--..|..+.|+.+|+|+++-+. -+|+|||+ ...+.+.++..|.. . -..++|+- ++
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~ 341 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-ND 341 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-Cc
Confidence 112245889999999999987643 58999999 45566666654432 1 24578886 77
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 006497 296 EYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 296 ~~l~sgs~dg~I~iwd~~~~ 315 (643)
.++++|+....++++++..+
T Consensus 342 ~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ceEecccccceEEEecCCCC
Confidence 89999999999999996443
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-15 Score=154.16 Aligned_cols=169 Identities=19% Similarity=0.406 Sum_probs=135.2
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceEEEEc----cCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-----------
Q 006497 82 PTGRRLITGSQSGEFTLWNGQSFNFEMILQ----AHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNNM----------- 145 (643)
Q Consensus 82 pdg~~L~tgs~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~~~----------- 145 (643)
+++--|++|-..|.|.+.|....+..+.+. .....|+|+.|.+.+ ..++++-.+|.+++||.+.
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 445568888888999999866533222221 134789999998854 5667778899999997421
Q ss_pred ---Cc--------------eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC
Q 006497 146 ---NN--------------VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP 208 (643)
Q Consensus 146 ---~~--------------~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp 208 (643)
+. .+..+...++.|..++|++|+++||+.+.||.++|||..+.+.+...+..-+...|++|+|
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP 342 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP 342 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence 11 0111122345788999999999999999999999999999888877777778899999999
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 006497 209 TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp 250 (643)
|+++|++|++|..|.||.+..++.+..-.+|+++|..|+|.+
T Consensus 343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999999999999999999986
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-13 Score=149.82 Aligned_cols=220 Identities=11% Similarity=0.133 Sum_probs=157.2
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEE-eCCC--cEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDGG--AIKY 140 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg-~~dg--~V~i 140 (643)
.+..+...+.+.+|+|||+.|+..+. +..|++||+.+++... +....+.+..++|++||+.|+.. +.+| .|++
T Consensus 193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 34455668999999999999987643 3579999998876433 22334445678999999988865 4455 4888
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d-g--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
||+++++..... .+...+....|++|++.|+.++.+ + .|+++|+.+++. ..+........+.+|++|+++|+..+
T Consensus 272 ~d~~tg~~~~lt-~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~ 349 (429)
T PRK03629 272 MDLASGQIRQVT-DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVS 349 (429)
T ss_pred EECCCCCEEEcc-CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEE
Confidence 999887765543 344567889999999988777654 3 455557766543 33443444566889999999988776
Q ss_pred CC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCc---EEEEECCCCeEEEEeecCCCCeEEEEEe
Q 006497 218 KD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQI---IKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 218 ~d---g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~---I~iwd~~~~~~~~~~~~~~~~I~~l~~s 291 (643)
.+ ..|++||+++++.. .+... .......|++||++|+.++.++. +.++++ +++....+..+...+...+|+
T Consensus 350 ~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Ws 426 (429)
T PRK03629 350 SNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWS 426 (429)
T ss_pred ccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccC
Confidence 54 35889999887643 33322 23457889999999999887764 677777 466667777778888899998
Q ss_pred c
Q 006497 292 P 292 (643)
Q Consensus 292 p 292 (643)
|
T Consensus 427 p 427 (429)
T PRK03629 427 P 427 (429)
T ss_pred C
Confidence 7
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-14 Score=137.83 Aligned_cols=234 Identities=16% Similarity=0.281 Sum_probs=166.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCee--
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQE-- 190 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~~-- 190 (643)
+..+..++|++.-..++++..|-.|++||-+..............|+|++|-|.+ ..|++++. +-|.||.......
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 4567789999877788999999999999987744444444566789999999976 45666665 5589998643111
Q ss_pred ------------eeEeeccCCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEE
Q 006497 191 ------------ERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 191 ------------~~~~~~~~~~V~~l~~sp~~~~l~sgs~-dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s 257 (643)
+....+| ..|+++.|.+|+..+++++. |..|.|||.+++..+.......+.++-+.|+||+.+|++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence 1112233 57999999999999998874 568999999998877655445667899999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcce---------EEEe------
Q 006497 258 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ---------VEIH------ 322 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~---------~~~~------ 322 (643)
++-|+..++|+..............+.|...+|+|.+..+|++++.+-.|+-..+...... ..+.
T Consensus 256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 9999999999654433333333345599999999966666777766555543333221111 0000
Q ss_pred ---c---ccCcceEEEEEcCCCCEEEEEECCCe
Q 006497 323 ---N---VHDNTVWDLAWHPIGYLLCSGSNDHT 349 (643)
Q Consensus 323 ---~---~h~~~V~~l~~s~d~~~L~sgs~Dg~ 349 (643)
. .-.+.+.+++|++.|.+|++.-+.+.
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 01356889999999999998766543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.9e-14 Score=150.84 Aligned_cols=235 Identities=10% Similarity=0.090 Sum_probs=152.7
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~ 170 (643)
..|.+||.+. ...+.+..+...+.+.+|++|++.|+..+.+ ..|.+||+.+++.... ......+.+.+|++|++.
T Consensus 176 ~~L~~~D~dG-~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADG-QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCC-CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 3677788744 4444555677889999999999998877643 3599999988876543 334456678999999998
Q ss_pred EE-EEeCCCcEEEEE--CCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC-CCcEEEE--ECCCCceeEEeccCCCcEE
Q 006497 171 FC-SCSDDTTVKVWD--FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLW--DAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 171 l~-s~s~dg~I~iwd--l~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~-dg~I~iw--D~~~~~~~~~~~~~~~~i~ 244 (643)
|+ +.+.++...||. +..+ ....+..+...+....|++|++.|+..+. ++...|| |+.+++. ..+........
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~-~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGS-GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCC-CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 86 456677766654 4443 34455545555677899999998876654 4555555 4444443 22222233345
Q ss_pred EEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe-CCCc--EEEEECCCCcce
Q 006497 245 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWLVGHETPQ 318 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs-~dg~--I~iwd~~~~~~~ 318 (643)
..+|++||++|+..+.++ .|.+||+.+++... +.. ........|++ +++.|+..+ .+|. +++.+++ ...
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~~--g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAP-NGRYILYATQQGGRSVLAAVSSD--GRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECC-CCCEEEEEEecCCCEEEEEEECC--CCc
Confidence 688999999998877654 69999998876543 322 23346789999 555555544 4444 4444442 222
Q ss_pred EEEecccCcceEEEEEcCC
Q 006497 319 VEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 319 ~~~~~~h~~~V~~l~~s~d 337 (643)
......+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 3333345566777788763
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=148.67 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=158.6
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~ 170 (643)
..|.+||....+ .+.+..+...+.+.+|++|++.|+..+.+ ..|++||+.+++.... ........+++|++|++.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccCCCCccCceECCCCCE
Confidence 368999986543 44555677889999999999999887643 4699999988765443 334455668899999987
Q ss_pred EE-EEeCCC--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC-CCc--EEEEECCCCceeEEeccCCCcEE
Q 006497 171 FC-SCSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DSL--VKLWDAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 171 l~-s~s~dg--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~-dg~--I~iwD~~~~~~~~~~~~~~~~i~ 244 (643)
|+ +.+.++ .|++||+.+++. ..+..+.......+|++|++.|+.++. ++. |+++|+.+++... +........
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~ 339 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNA 339 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence 75 445555 599999987654 445545555678899999998887764 444 7777877665433 322334455
Q ss_pred EEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeC-C--CcEEEEECCCCcce
Q 006497 245 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-D--GSIFHWLVGHETPQ 318 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~-d--g~I~iwd~~~~~~~ 318 (643)
.++|++||++|+..+.++ .|.+||+.+++.. .+. +........|++ ++++|+..+. . +.|++++++.. .
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~g~--~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTDGR--V 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCC--c
Confidence 789999999998776443 6999999877654 333 222455679999 6666555544 2 35666776432 2
Q ss_pred EEEecccCcceEEEEEcC
Q 006497 319 VEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 319 ~~~~~~h~~~V~~l~~s~ 336 (643)
......+.+.+...+|++
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 233333455677778875
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=136.50 Aligned_cols=238 Identities=19% Similarity=0.215 Sum_probs=166.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCC-----CC----EEEEEeCCCc-EE
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-----DN----WMVSGDDGGA-IK 139 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~-----~~----~L~sg~~dg~-V~ 139 (643)
.|+..|+.+...++ +.|.+-+.|+.+.+|++.....+.+ |.-.++++-|.+. .+ .++.-++... +.
T Consensus 54 ~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 54 FGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 56778888888887 4688889999999999887554433 3344445555431 11 1111111100 11
Q ss_pred EEECCCCceEEee----cCCCCCeEEEEEecC-CC--EEEEEeCCCcEEEEECCCCeee----------eEeeccCCCeE
Q 006497 140 YWQNNMNNVKANK----SAHKESVRDLSFCRT-DL--KFCSCSDDTTVKVWDFARCQEE----------RSLTGHGWDVK 202 (643)
Q Consensus 140 iwd~~~~~~~~~~----~~~~~~I~~l~~s~d-~~--~l~s~s~dg~I~iwdl~~~~~~----------~~~~~~~~~V~ 202 (643)
+-|......+... ....+.+.|..+..+ +. .|++|.++|.|.+||+.++..+ ..+..|...|.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 1221111111111 233456777664332 22 3677888999999999887433 33446888999
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC--ce--eEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 006497 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSG--RE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 278 (643)
Q Consensus 203 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~--~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 278 (643)
++.+.+..+.=++++.+..+..|+++.. .. ...++..+-.|..+.+-+|++.+++++.|+.||||+.++...+..+
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL 289 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh
Confidence 9999877677788888888999988632 11 1122223445888999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 279 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 279 ~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
+-|...|++++|++ +.+++|+++.|++|.+|++
T Consensus 290 kyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 290 KYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 99999999999999 7899999999999999986
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-13 Score=144.31 Aligned_cols=233 Identities=14% Similarity=0.112 Sum_probs=160.4
Q ss_pred cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEE
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~---dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l 171 (643)
.|.+||.+..+.. .+..+...+.+.+|++||+.|+..+. +..|.+||+.+++.... ......+..++|++|++.|
T Consensus 180 ~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEE
Confidence 6999998765543 34456778999999999998886542 35699999988765433 2333445678999999988
Q ss_pred EEE-eCCC--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCceeEEeccCCCcEEE
Q 006497 172 CSC-SDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVLC 245 (643)
Q Consensus 172 ~s~-s~dg--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d-g--~I~iwD~~~~~~~~~~~~~~~~i~~ 245 (643)
+.. +.++ .|++||+++++... +..+...+...+|+||++.|+..+.+ + .|+++|+.+++. ..+........+
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~ 335 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 335 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCccC
Confidence 765 3344 59999998775543 44444567899999999988877654 3 455567776644 334334445677
Q ss_pred EEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCc---EEEEECCCCcceE
Q 006497 246 VKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS---IFHWLVGHETPQV 319 (643)
Q Consensus 246 l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~---I~iwd~~~~~~~~ 319 (643)
.+|++||++|+..+.+ ..|.+||+.+++.. .+.. ........|++ ++++|+..+.++. +.+++++. ....
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~-~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~~G-~~~~ 411 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTD-TFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVSTDG-RFKA 411 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCC-CCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCC-CCeE
Confidence 8999999999876643 35888999877643 3332 22345678999 7887877777654 56667633 2233
Q ss_pred EEecccCcceEEEEEcC
Q 006497 320 EIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 320 ~~~~~h~~~V~~l~~s~ 336 (643)
. +..|.+.+...+|++
T Consensus 412 ~-l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 R-LPATDGQVKFPAWSP 427 (429)
T ss_pred E-CccCCCCcCCcccCC
Confidence 3 335677888889986
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-13 Score=144.62 Aligned_cols=233 Identities=12% Similarity=0.071 Sum_probs=159.9
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD---GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~---dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~ 170 (643)
..|.+||.+.. ..+.+..+...+.+.+|++|++.|+..+. +..|.+||+.+++... +..+.+.+.+.+|++|++.
T Consensus 182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCCcccCcEECCCCCE
Confidence 37889997654 44556678889999999999998887753 4679999998876543 3455667788999999988
Q ss_pred EE-EEeCCCc--EEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCceeEEeccCCCcEE
Q 006497 171 FC-SCSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 171 l~-s~s~dg~--I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~-dg--~I~iwD~~~~~~~~~~~~~~~~i~ 244 (643)
|+ +.+.++. |++||+++++. ..+..+.......+|++|++.|+..+. ++ .|++||+.+++. ..+......+.
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~ 337 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYS 337 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCccc
Confidence 75 4455554 77889887654 445555556778999999998887764 33 688889876554 33433445567
Q ss_pred EEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeC-C-----CcEEEEECCCC
Q 006497 245 CVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL-D-----GSIFHWLVGHE 315 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~-d-----g~I~iwd~~~~ 315 (643)
...|++||++|+....+ ..|.+||+..+.. ..+. ....+..+.|++ +++.|+..+. . ..|+++|++..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 78999999999887643 3688889865443 3333 233577889999 5666554443 3 24677777544
Q ss_pred cceEEEecccCcceEEEEEcC
Q 006497 316 TPQVEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 316 ~~~~~~~~~h~~~V~~l~~s~ 336 (643)
.. ..+. ....+...+|++
T Consensus 415 ~~-~~l~--~~~~~~~p~Wsp 432 (435)
T PRK05137 415 NE-REVP--TPGDASDPAWSP 432 (435)
T ss_pred ce-EEcc--CCCCccCcccCC
Confidence 33 2222 233466677765
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-13 Score=148.03 Aligned_cols=220 Identities=13% Similarity=0.146 Sum_probs=152.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQ 142 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~-sg~~dg~V~iwd 142 (643)
.+..+...|.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+.+|++|++.|+ +.+.++...||.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999999887643 359999999887543 333456677899999998887 467788766665
Q ss_pred --CCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEEC--CCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 143 --NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDF--ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 143 --~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl--~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
+..+.. ..+..+...+....|++|++.|+..+. ++...||.+ .+++. ..+..........+|++|+++|+..+
T Consensus 269 ~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 269 VNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred EECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEE
Confidence 444443 344445555677899999998876654 455566654 44433 22222233345688999999998877
Q ss_pred CCC---cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 006497 218 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 218 ~dg---~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~I~~l~~s 291 (643)
.++ .|++||+.+++... +... .......|++|+++|+.++.++ .+.+.|+ +++....+..+.+.+...+|+
T Consensus 347 ~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~ws 423 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWG 423 (427)
T ss_pred ccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccC
Confidence 654 59999998876443 3322 3346789999999988877544 3556666 455566666666778888887
Q ss_pred c
Q 006497 292 P 292 (643)
Q Consensus 292 p 292 (643)
|
T Consensus 424 p 424 (427)
T PRK02889 424 P 424 (427)
T ss_pred C
Confidence 6
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-13 Score=147.25 Aligned_cols=220 Identities=14% Similarity=0.145 Sum_probs=155.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEE-EEeCCC--cEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGG--AIKY 140 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~-sg~~dg--~V~i 140 (643)
.+..+...|.+.+|++|++.|+..+.+ ..|++||+.+++... +....+...++.|++|++.|+ +.+.+| .|++
T Consensus 198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 455677789999999999999987643 469999998876543 334455566889999998776 445555 5999
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCc--EEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~--I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
||+.+++... +..+.......+|++|++.|+.++. ++. |+++|+.+++... +.........++|++|+++|+..+
T Consensus 277 ~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~ 354 (433)
T PRK04922 277 MDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVH 354 (433)
T ss_pred EECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEE
Confidence 9998887554 4445555678899999998887764 444 7777876655433 322334455789999999998876
Q ss_pred CCC---cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 006497 218 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 218 ~dg---~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~I~~l~~s 291 (643)
.++ .|.+||+.+++.. .+. +........|++||++|+..+.+ ..|.++|+. +.....+..+...+...+|+
T Consensus 355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~~g~~~~p~ws 431 (433)
T PRK04922 355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSADGEVREPAWS 431 (433)
T ss_pred CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccCCCCCCCCccC
Confidence 543 5999999887654 343 22245677999999988877653 367888875 44555565556677777887
Q ss_pred c
Q 006497 292 P 292 (643)
Q Consensus 292 p 292 (643)
|
T Consensus 432 p 432 (433)
T PRK04922 432 P 432 (433)
T ss_pred C
Confidence 5
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-13 Score=128.53 Aligned_cols=261 Identities=15% Similarity=0.255 Sum_probs=181.8
Q ss_pred CCcEEEEeCCCCceEE---EEccCCCCEEEEEEcC---CCC-EEEEEeCCCcEEEEECCCCceEEeecCC---C---CCe
Q 006497 93 SGEFTLWNGQSFNFEM---ILQAHDHAIRSMVWSH---NDN-WMVSGDDGGAIKYWQNNMNNVKANKSAH---K---ESV 159 (643)
Q Consensus 93 dg~I~iwd~~~~~~~~---~l~~h~~~V~~l~~s~---~~~-~L~sg~~dg~V~iwd~~~~~~~~~~~~~---~---~~I 159 (643)
.|++.+|++++.+... ........+..+.|.. ++. .|+-+..+|.|.++.....+....+... + ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4778999887765433 2223456677788864 444 5677788899999976655443333221 1 124
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeee--EeeccCCCeEEEEEcCC-CCEEEEEECCCcEEEEECC-CCceeEE
Q 006497 160 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAK-SGRELCS 235 (643)
Q Consensus 160 ~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~--~~~~~~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~~-~~~~~~~ 235 (643)
.++.|+..+..+++...+|.+.+-+........ .++.|+.++....|+.. .+++.+|++|+.+..||+| .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 567888888889999999999977765554444 77889999999999764 4688999999999999999 3344433
Q ss_pred -eccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCC-CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 236 -FHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA-MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 236 -~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
.+.|...|.+|.-++ ++.+|++|+.|..|++||.|+ ++.+..-. ..+.|+.+.++|.....|++++.-+-.+|.+.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~ 283 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDS 283 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEe
Confidence 456888899998887 678999999999999999995 44444333 45889999999965545555554555667776
Q ss_pred CCCcce----EEEecccCcceEEEEEcCCCCEEEEEE-CCCeEE-EEe
Q 006497 313 GHETPQ----VEIHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTK-FWC 354 (643)
Q Consensus 313 ~~~~~~----~~~~~~h~~~V~~l~~s~d~~~L~sgs-~Dg~V~-iWd 354 (643)
.+.... ......|.+-+..-.|.....+|+|++ .|..++ +|-
T Consensus 284 ~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 284 SDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred cccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 554332 344556777677777755556788865 466544 663
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-13 Score=144.17 Aligned_cols=220 Identities=14% Similarity=0.134 Sum_probs=156.8
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEEC---CCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCc--EE
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQ---SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGA--IK 139 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~---dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~-sg~~dg~--V~ 139 (643)
+.+..|...|.+.+|++||+.|+..+. +..|++||+.+++.. .+..+.+.+.+.+|++||+.|+ +.+.++. |.
T Consensus 195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 273 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIY 273 (435)
T ss_pred EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEE
Confidence 446678889999999999999988764 467999999887653 4455667788999999998776 4555555 77
Q ss_pred EEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEE
Q 006497 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D--TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-d--g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sg 216 (643)
+||+++++... +..+........|++|++.|+..+. + ..|++||+..++. ..+......+....|++|++.|+..
T Consensus 274 ~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 274 TMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcccCeEECCCCCEEEEE
Confidence 77888776544 4455566778999999998887764 3 3688889876544 3343345567778999999999887
Q ss_pred ECC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC------CcEEEEECCCCeEEEEeecCCCCeEE
Q 006497 217 GKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 217 s~d---g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
..+ ..|.+||+.++. ...+. ....+..+.|++||+.|+..+.+ ..|.++|+..++. ..+. ....+..
T Consensus 352 ~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~-~~~~~~~ 427 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP-TPGDASD 427 (435)
T ss_pred EcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc-CCCCccC
Confidence 654 358889986554 33333 22356789999999988876543 2578888865443 3443 3445667
Q ss_pred EEEec
Q 006497 288 LAWHP 292 (643)
Q Consensus 288 l~~sp 292 (643)
.+|++
T Consensus 428 p~Wsp 432 (435)
T PRK05137 428 PAWSP 432 (435)
T ss_pred cccCC
Confidence 77776
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=133.87 Aligned_cols=246 Identities=17% Similarity=0.290 Sum_probs=185.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe-CCCCceEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN-GQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd-~~~~~~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~dg~V~iw 141 (643)
+...++||.+.|++...-+...-+++.+.|.+++||- .+.++.-..+. .-...++++.+..+...|+++-.+|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4466889999999999998888899999999999995 34444333332 235789999999999999999999999988
Q ss_pred EC----CCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 142 QN----NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 142 d~----~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
.+ +.....+....|...|..+.|+.....+++.+.|..+.---.+.+..+..+.- ...-+++.+.-. +..+|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 54 34445556678999999999998888999999888775544455444433221 111122222211 555666
Q ss_pred CCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCC
Q 006497 218 KDSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFH 294 (643)
Q Consensus 218 ~dg~I~iwD~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~ 294 (643)
..|.|.+..+. .-..+.++.+|.+.+.+++|.+...+|+++..|..|.+||+--.+ ...++.+|.+.|..+.... .
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~-~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQ-H 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhh-h
Confidence 66766655443 456788899999999999999999999999999999999996443 3456678889998888776 6
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 006497 295 EEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 295 ~~~l~sgs~dg~I~iwd~~ 313 (643)
-..+++++.||.|.+|+.+
T Consensus 252 t~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMN 270 (404)
T ss_pred heeeeeccCCCeEEEEecc
Confidence 7889999999999999985
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.3e-13 Score=133.79 Aligned_cols=241 Identities=14% Similarity=0.216 Sum_probs=185.2
Q ss_pred CCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceEEee------cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE
Q 006497 113 HDHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNNVKANK------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 113 h~~~V~~l~~s~~~~--~L~sg~~dg~V~iwd~~~~~~~~~~------~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
....|..++|..+++ .|+..+.|..+..+++....+...+ ......|..++.. +..|++|..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence 345778888876653 4555546777777777665544432 3345566666653 34688889999999999
Q ss_pred CCCCe----eeeEeeccCCCeEEEEEcCCCC-EEEEEECC--CcEEEEECCCCceeEEeccCC---------CcEEEEEE
Q 006497 185 FARCQ----EERSLTGHGWDVKSVDWHPTKS-LLVSGGKD--SLVKLWDAKSGRELCSFHGHK---------NMVLCVKW 248 (643)
Q Consensus 185 l~~~~----~~~~~~~~~~~V~~l~~sp~~~-~l~sgs~d--g~I~iwD~~~~~~~~~~~~~~---------~~i~~l~~ 248 (643)
++.+. .+..+.. ...+..+.-++... .+++|+.. ..++|||++..+.+.+-+.-. -+++++.|
T Consensus 132 ~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred ccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 87432 2333332 24556666665444 55668888 789999999886665544222 35788899
Q ss_pred cCC--CCEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEeccc
Q 006497 249 NQN--GNWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 325 (643)
Q Consensus 249 sp~--g~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 325 (643)
-+. ...|++++.-+.|++||.+.++ .+..|...+..|+++...+ ++++|+++..-+.+..||++..+.....+.+-
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~ 289 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI 289 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCc
Confidence 886 7899999999999999998765 4788888899999999999 89999999999999999999998888878888
Q ss_pred CcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 326 DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 326 ~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.+.|++|..++...+|++++-|..|||+|+++
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 89999999999999999999999999999976
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=151.89 Aligned_cols=270 Identities=16% Similarity=0.212 Sum_probs=191.5
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc------cC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------AH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~------~h--~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
.+++..+-. ++|++|. .-.|.+||+.++..+..+. .| ++.+.+ .+.+++++..-+.+..-+.+.
T Consensus 9 ~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l-----~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 9 PLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKL-----LSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhccccccccccccee-----ccceEEEEEeecceeecchhh
Confidence 444555544 5666655 3469999988876554432 23 111111 234555555544444333221
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCC----eEEEEEcCCCCEEEEEECCCc
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD----VKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~----V~~l~~sp~~~~l~sgs~dg~ 221 (643)
. .+....+.|....+..+++.++.++.++.+.+||.........+...+.. ..-+.++.+.-++++|+.-+.
T Consensus 81 ~----~~~~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~ 156 (967)
T KOG0974|consen 81 Q----IIERFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGE 156 (967)
T ss_pred h----hhhhccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccccc
Confidence 1 11223344555566667788999999999999999877666555432221 112233555668999999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE-EeecCCCCeEEEEEecCCCCEEEE
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
|.+|+....+.-..+.+|++.|.++.|+.||.++++.++|.++++|++++.+.+. ..-+|...|..+++++ + .+++
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~-n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP-N--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEecc-c--eeEE
Confidence 9999998444444688999999999999999999999999999999999988876 5567999999999997 3 9999
Q ss_pred EeCCCcEEEEECCCCcceEEEeccc-CcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 301 GSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
++.|-+.++|+.+..... .+..| ...|+.++...+...++|++.|+.+++|++.....
T Consensus 234 ~gedctcrvW~~~~~~l~--~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQLE--VYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred eccceEEEEEecccceeh--hhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcccc
Confidence 999999999976443332 33344 45799999999999999999999999999865433
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-12 Score=133.25 Aligned_cols=272 Identities=12% Similarity=0.199 Sum_probs=173.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEE-----eCC-----CcEEEE
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-----DDG-----GAIKYW 141 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg-----~~d-----g~V~iw 141 (643)
...++..+++++|+++|.+. +..++|++..+.+.+.... ...++++.|++.+++|.+= ..+ -.+++|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEec--cceeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 44577889999998777765 5689999988876444433 2389999999999988752 122 347799
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEE------------------
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS------------------ 203 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~------------------ 203 (643)
+++++.....+......-+++.|+.|+.+.+ --..+.|.+||+.+.+.+.. +.|...|+.
T Consensus 111 ~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 111 NVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEEEEccC
Confidence 9988544333322222224667776654322 22245566666654221111 112223333
Q ss_pred ----------------------------------EEEcCCCC-EEEEE--ECC---------CcEEEEECCCCceeEEec
Q 006497 204 ----------------------------------VDWHPTKS-LLVSG--GKD---------SLVKLWDAKSGRELCSFH 237 (643)
Q Consensus 204 ----------------------------------l~~sp~~~-~l~sg--s~d---------g~I~iwD~~~~~~~~~~~ 237 (643)
+.|+..+. +|+.+ .-| .++++++++...+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 44444333 22221 112 245566655323332332
Q ss_pred cCCCcEEEEEEcCCCCEEEE--EECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCC---CcEEEEEC
Q 006497 238 GHKNMVLCVKWNQNGNWVLT--ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLV 312 (643)
Q Consensus 238 ~~~~~i~~l~~sp~g~~l~s--~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d---g~I~iwd~ 312 (643)
..+.|.+++|+++++-+++ |-.-.++.|||++ ++.+..+ ..+.-+++-|+| .+++|+.++.+ |.|-|||+
T Consensus 269 -k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv 343 (566)
T KOG2315|consen 269 -KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDV 343 (566)
T ss_pred -CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEec
Confidence 4678999999999976665 4456789999987 4555544 566778899999 78887777654 78999999
Q ss_pred CCCcceEEEecccCcceEEEEEcCCCCEEEEEEC------CCeEEEEecC
Q 006497 313 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DHTTKFWCRN 356 (643)
Q Consensus 313 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~------Dg~V~iWd~~ 356 (643)
.+.+.+..+.. ..-+-+.|+|||.+|+|++. |+.++||++.
T Consensus 344 ~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 344 PNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 88665555442 34566899999999998875 7889999984
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-12 Score=133.76 Aligned_cols=271 Identities=11% Similarity=0.075 Sum_probs=176.7
Q ss_pred CEEE-EEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEE
Q 006497 85 RRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 163 (643)
Q Consensus 85 ~~L~-tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 163 (643)
++++ +-..++.|.|.|..+.+.+..+......-..+.|++|++++++++.||.|.++|+.+.+.+..+.. ......++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~ 84 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIA 84 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEE
Confidence 3444 455689999999999999999986554445578999999999999999999999999999888765 44577899
Q ss_pred EecCCCEEEEEe-CCCcEEEEECCCCeeeeEeecc-------CCCeEEEEEcCCCCEEEEEEC-CCcEEEEECCCCceeE
Q 006497 164 FCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGH-------GWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELC 234 (643)
Q Consensus 164 ~s~d~~~l~s~s-~dg~I~iwdl~~~~~~~~~~~~-------~~~V~~l~~sp~~~~l~sgs~-dg~I~iwD~~~~~~~~ 234 (643)
+++|++++++++ .++.|.|+|.++.+.++.+... +..+..|..++....+++.-. .+.|.+.|....+.+.
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~ 164 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK 164 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred EcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence 999999988765 5899999999999888877532 346778888888886665555 4888888987654432
Q ss_pred -EeccCCCcEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEeec----CCCCeEEE-------EEecC-CCCEEEE
Q 006497 235 -SFHGHKNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFRG----HRKDVTAL-------AWHPF-HEEYFVS 300 (643)
Q Consensus 235 -~~~~~~~~i~~l~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~~----~~~~I~~l-------~~sp~-~~~~l~s 300 (643)
+............|+++++|++++ ..++.|.++|.++++.+..+.. |...+..+ .|... .+...++
T Consensus 165 ~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~ 244 (369)
T PF02239_consen 165 VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIP 244 (369)
T ss_dssp EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEE
T ss_pred eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecc
Confidence 222244567889999999987765 4677999999999988776653 22233322 12111 1222222
Q ss_pred EeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEE----ECCCeEEEEecCCC
Q 006497 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG----SNDHTTKFWCRNRP 358 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sg----s~Dg~V~iWd~~~~ 358 (643)
.-....+.+||....+.+..+... ... ..+..+|++++|.+. ..++.|.++|.+..
T Consensus 245 ~ig~~~v~v~d~~~wkvv~~I~~~-G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 245 LIGTDPVSVHDDYAWKVVKTIPTQ-GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEE--TTT-STTTBTSEEEEEE-S-SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT
T ss_pred cccCCccccchhhcCeEEEEEECC-CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc
Confidence 222335556777776666666542 334 778889999999988 45689999999765
|
... |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=143.99 Aligned_cols=198 Identities=16% Similarity=0.237 Sum_probs=161.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCE----EEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAI----RSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V----~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
...+.|....+..+.+.++.++.++.+.|||.........+...+... .-+-++.+.-++++|+.-+.|.+|+...
T Consensus 85 ~~s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 85 RFSDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred hccccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 345566667777788899999999999999988877666655333221 1123345556899999999999999875
Q ss_pred CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee-EeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~-~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
.+.-..+.+|++.|.++.++.|+.+++++++|.++++|++++.+... ...+|...|..++|+++ .|+++++|.+.++
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrv 242 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRV 242 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEE
Confidence 55544678999999999999999999999999999999999988776 66789999999999977 8999999999999
Q ss_pred EECCCCceeEEeccCC-CcEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 225 WDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 270 (643)
|+.+ ++.+..++.|. ..|..++...+...+++++.|+.+++||+.
T Consensus 243 W~~~-~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 243 WGVN-GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred Eecc-cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 9765 45555666664 458999999888899999999999999864
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=130.65 Aligned_cols=242 Identities=16% Similarity=0.349 Sum_probs=173.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eEEeecCC------------CCCeEEEEEecCCC--EEEE
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTDL--KFCS 173 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~-----~~~~~~~~------------~~~I~~l~~s~d~~--~l~s 173 (643)
..+-|.+|.|..+|++|++|+.+|.|.++.-+... ....+..| ...|..+.|..+++ .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678899999999999999999999999643221 22222222 35688899998764 4777
Q ss_pred EeCCCcEEEEECCCCeeee-----------------------------------Ee-eccCCCeEEEEEcCCCCEEEEEE
Q 006497 174 CSDDTTVKVWDFARCQEER-----------------------------------SL-TGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 174 ~s~dg~I~iwdl~~~~~~~-----------------------------------~~-~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
.+.|.+|++|.+....... .+ ..|..-|++|.++.|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 8899999999884321111 00 2577789999999999888876
Q ss_pred CCCcEEEEECCCCc-e--eEEeccC-----CCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEE----EEe------
Q 006497 218 KDSLVKLWDAKSGR-E--LCSFHGH-----KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL----ESF------ 278 (643)
Q Consensus 218 ~dg~I~iwD~~~~~-~--~~~~~~~-----~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~----~~~------ 278 (643)
+|=.|.+|+++--. . +..++.+ ..-|++..|+| ..++++..+..|+|++.|+|..... +.+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 46789999987322 2 2222322 23488999999 5678888889999999999843221 111
Q ss_pred ------ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCc------------c---eEEEEEcCC
Q 006497 279 ------RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDN------------T---VWDLAWHPI 337 (643)
Q Consensus 279 ------~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~------------~---V~~l~~s~d 337 (643)
..--..|..+.|+. +++++++-+. -+|++||+......+.....|.. . -..++|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11223578899998 8899998764 49999999776666665554432 2 346789999
Q ss_pred CCEEEEEECCCeEEEEecCC
Q 006497 338 GYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+.+++||+..+.+++|++.+
T Consensus 341 ~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cceEecccccceEEEecCCC
Confidence 99999999999999999654
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-11 Score=123.60 Aligned_cols=273 Identities=10% Similarity=0.122 Sum_probs=178.7
Q ss_pred EEEEECC----CcEEEEeC--CCCceEEEE-ccCCCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--c--eEEe
Q 006497 87 LITGSQS----GEFTLWNG--QSFNFEMIL-QAHDHAIRSMVWSHNDNWMVSGDD----GGAIKYWQNNMN--N--VKAN 151 (643)
Q Consensus 87 L~tgs~d----g~I~iwd~--~~~~~~~~l-~~h~~~V~~l~~s~~~~~L~sg~~----dg~V~iwd~~~~--~--~~~~ 151 (643)
+++|+.+ +.|++|++ +++++...- .........+++++++++|+++.. ++.|..|++... + .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556555 67888876 444433221 123455677899999999999877 468999987764 3 2333
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC-eeeeE---ee----------ccCCCeEEEEEcCCCCEEEEE
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARC-QEERS---LT----------GHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~-~~~~~---~~----------~~~~~V~~l~~sp~~~~l~sg 216 (643)
..........+++++++++|+++.. +|.|.++++... ..... +. .......++.|+|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3334556678999999999888874 899999999763 32222 11 122456799999999988877
Q ss_pred EC-CCcEEEEECCCCc--ee--EEe-ccCCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECC--CCe--EEEEeecC----
Q 006497 217 GK-DSLVKLWDAKSGR--EL--CSF-HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIR--AMK--ELESFRGH---- 281 (643)
Q Consensus 217 s~-dg~I~iwD~~~~~--~~--~~~-~~~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~--~~~--~~~~~~~~---- 281 (643)
.. ...|++|+++... .. ..+ ......-+.++|+++++++++.+ .++.|.+|++. +++ .+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 54 3479999997654 21 122 23445688999999999887766 56789999988 443 23333221
Q ss_pred --CCCeEEEEEecCCCCEEEEE-eCCCcEEEEECCCC-cceE--EEecccCcceEEEEEcCCCCEEEEEE-CCCeEEEEe
Q 006497 282 --RKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHE-TPQV--EIHNVHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWC 354 (643)
Q Consensus 282 --~~~I~~l~~sp~~~~~l~sg-s~dg~I~iwd~~~~-~~~~--~~~~~h~~~V~~l~~s~d~~~L~sgs-~Dg~V~iWd 354 (643)
......|++++ ++++|+++ -.++.|.+|+++.. ..+. .........-+.+++++++++|+++. .++.|.+|+
T Consensus 242 ~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 12578899999 56665554 46678999999543 2222 22222234579999999999998877 567999999
Q ss_pred cCCCCC
Q 006497 355 RNRPGD 360 (643)
Q Consensus 355 ~~~~~~ 360 (643)
++...-
T Consensus 321 ~d~~tG 326 (345)
T PF10282_consen 321 IDPDTG 326 (345)
T ss_dssp EETTTT
T ss_pred EeCCCC
Confidence 975433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-13 Score=140.34 Aligned_cols=255 Identities=19% Similarity=0.254 Sum_probs=188.3
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee-cCCCCCeEEEEEecC--CCEEEEEeCCCcEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRT--DLKFCSCSDDTTVK 181 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~-~~~~~~I~~l~~s~d--~~~l~s~s~dg~I~ 181 (643)
.+...|..|.+.|+.|.|+..|..|++++.|..|.+||+...+.+..+ .+|...|....|.|. ...|++++.||.|+
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR 212 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence 345667889999999999999999999999999999999887765544 678888888888774 46799999999999
Q ss_pred EEECCCCee---eeEeeccCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeEEe---ccCCC---cEEEEEEcCC
Q 006497 182 VWDFARCQE---ERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSF---HGHKN---MVLCVKWNQN 251 (643)
Q Consensus 182 iwdl~~~~~---~~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~---~~~~~---~i~~l~~sp~ 251 (643)
+=.+..... ...+..|.+.|..++..|+. ..|.+++.|+.+.-+|++.+....++ +.+.. ....|+..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 987743322 34455688999999998865 46889999999999999977544333 22333 5678888884
Q ss_pred C-CEEEEEECCCcEEEEECCCCeE------EEEee------cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc--
Q 006497 252 G-NWVLTASKDQIIKLYDIRAMKE------LESFR------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET-- 316 (643)
Q Consensus 252 g-~~l~s~s~dg~I~iwd~~~~~~------~~~~~------~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~-- 316 (643)
. +.+++++.|..+++||.+.... +..+. .....|++++++.+.+.+|++- .|-.|+++.-..+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-nDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-NDEDIYLFNKSMGDGS 371 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-cccceEEeccccccCC
Confidence 4 5899999999999999876332 22222 2335699999997455555554 56688888543211
Q ss_pred ----------ceEEEecccCc--ceEEEEE-cCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 317 ----------PQVEIHNVHDN--TVWDLAW-HPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 317 ----------~~~~~~~~h~~--~V~~l~~-s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
.....+++|.+ .|..+-| -|...++++|+.-|.|.||+.+....
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH
Confidence 11223556654 4666654 46678999999999999999765433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=124.63 Aligned_cols=156 Identities=17% Similarity=0.360 Sum_probs=113.3
Q ss_pred EEEEEcCCCCEEEEEeC----------CCcEEEEECC--CCceEEeecCCCCCeEEEEEecCCCEEEEEe--CCCcEEEE
Q 006497 118 RSMVWSHNDNWMVSGDD----------GGAIKYWQNN--MNNVKANKSAHKESVRDLSFCRTDLKFCSCS--DDTTVKVW 183 (643)
Q Consensus 118 ~~l~~s~~~~~L~sg~~----------dg~V~iwd~~--~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s--~dg~I~iw 183 (643)
..+.|+++|++|++-.. -+...||.++ ............+.|.+++|+|+++.||++. .+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45788888887765433 1335555543 2222222223345699999999999876653 56799999
Q ss_pred ECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC
Q 006497 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 184 dl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d---g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 260 (643)
|++ .+.+..+. ...++.|.|+|+|++|++++.+ |.|.+||+++.+.+.+.+ | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 996 55555553 4578899999999999998754 669999999888887765 3 34789999999999998874
Q ss_pred ------CCcEEEEECCCCeEEEEee
Q 006497 261 ------DQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 261 ------dg~I~iwd~~~~~~~~~~~ 279 (643)
|+.++||+.. |+.+.+..
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred ccceeccccEEEEEec-CeEeEecc
Confidence 7889999984 66665543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-12 Score=135.47 Aligned_cols=268 Identities=13% Similarity=0.208 Sum_probs=191.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCC---------------ceEEEEccCCCCEEEEEEcCCCCEEEEEeCC
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSF---------------NFEMILQAHDHAIRSMVWSHNDNWMVSGDDG 135 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~---------------~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d 135 (643)
+.....|++|+.+..++|+|+.||.++|..+.+. ..-+++.+|++.|.-+.|+.+...|-+.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4567899999999999999999999999976542 1234578999999999999999999999999
Q ss_pred CcEEEEECCCCceEEee--cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEE
Q 006497 136 GAIKYWQNNMNNVKANK--SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 136 g~V~iwd~~~~~~~~~~--~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l 213 (643)
|.|.||-+-.+.-.... ...++.|.+++|+.||..|+.+..||.|.|=.++..+... -.........+.|++|.+.+
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwg-KeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWG-KELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecc-hhcchheccceeecccHHHH
Confidence 99999988766533322 3456779999999999999999999999987775543221 11112234578999999999
Q ss_pred EEEECCCcEEEEECCCCc-------eeEE----eccCCCcEEEEEEc--------CCCCEEEEEECCCcEEEEECCCCeE
Q 006497 214 VSGGKDSLVKLWDAKSGR-------ELCS----FHGHKNMVLCVKWN--------QNGNWVLTASKDQIIKLYDIRAMKE 274 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~~-------~~~~----~~~~~~~i~~l~~s--------p~g~~l~s~s~dg~I~iwd~~~~~~ 274 (643)
+.+-.+|.+.+||....- +... +......|-.+.|. ||...|+++..+|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 999999999999976321 1111 11222336667774 3667899999999998876554444
Q ss_pred EEEeecCCCCeEEEEEecCCCCEEEEEeCCC---------cEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEE
Q 006497 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDG---------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 275 ~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg---------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~s 343 (643)
-..+. ..-.|....|++ ++.+|+.++.|. .|.+|.- -..+...+......|++++|-..|-.++.
T Consensus 252 Pvv~d-tgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp--~G~i~gtlkvpg~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 252 PVVVD-TGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP--YGHIVGTLKVPGSCITGLSWEGTGLRIAI 325 (1189)
T ss_pred CeEEe-cccEeecceecC-CCcEEEEccCcccccCccccceEEEecc--chhheEEEecCCceeeeeEEcCCceEEEE
Confidence 33333 236788899999 888998887653 3444432 22233344445667888888766654443
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-12 Score=135.79 Aligned_cols=204 Identities=13% Similarity=0.121 Sum_probs=141.9
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~ 170 (643)
..|.++|....+ .+.+..+...+.+.+|++|+++|+.+..+ ..|++||+.+++.... ..+...+.+++|++|++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCE
Confidence 358888876444 44455567788999999999999887654 4799999988765443 344556778999999987
Q ss_pred EEEE-eCC--CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCceeEEeccCCCcEE
Q 006497 171 FCSC-SDD--TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 171 l~s~-s~d--g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d-g--~I~iwD~~~~~~~~~~~~~~~~i~ 244 (643)
|+.. +.+ ..|++||+.++.. ..+..+........|++|++.|+..+.. + .|++||+++++.. .+..+...+.
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~ 325 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA 325 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence 7644 434 3689999987644 3344444445678999999988776543 3 5888898876543 3443455677
Q ss_pred EEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 245 CVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
.+.|++++++|+.++.++ .|.+||+.++... .+.. ........|++ +++.|+..+.+
T Consensus 326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~-~~~~~~p~~sp-dg~~l~~~~~~ 385 (417)
T TIGR02800 326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD-TGLDESPSFAP-NGRMILYATTR 385 (417)
T ss_pred CeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC-CCCCCCceECC-CCCEEEEEEeC
Confidence 889999999999888776 7999999875432 2222 22345568999 55555555444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-11 Score=134.28 Aligned_cols=233 Identities=12% Similarity=0.058 Sum_probs=151.6
Q ss_pred cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEE
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l 171 (643)
.|.++|.+..+. +.+..+...+....|++|++.|+..+.+ ..|.+||+++++.... ....+.+...+|++|++.|
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCCCCcCCeEECCCCCEE
Confidence 477888776543 4455567789999999999998876543 3588999988765543 3334456678999999988
Q ss_pred EE-EeCCC--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCceeEEeccCCCcEEE
Q 006497 172 CS-CSDDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 245 (643)
Q Consensus 172 ~s-~s~dg--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~-dg--~I~iwD~~~~~~~~~~~~~~~~i~~ 245 (643)
+. .+.++ .|++||+++++. ..+..+........|++|++.|+..+. ++ .|+++|+.+++... +.........
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~ 335 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNAR 335 (430)
T ss_pred EEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccc
Confidence 74 44444 688889987654 344445555677899999998877654 33 58888888776433 2222233456
Q ss_pred EEEcCCCCEEEEEECC-C--cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe-CCCc--EEEEECCCCcceE
Q 006497 246 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWLVGHETPQV 319 (643)
Q Consensus 246 l~~sp~g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs-~dg~--I~iwd~~~~~~~~ 319 (643)
..|++|+++|+..+.+ + .|.+||+.+++.. .+.. ........|++ +++.|+..+ .++. |++++++... .
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~g~~--~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSINGRV--R 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECC-CCCEEEEEEecCCceEEEEEECCCCc--e
Confidence 7899999999877653 2 5888999877543 2322 22233568999 556555444 4443 5555653322 2
Q ss_pred EEecccCcceEEEEEcC
Q 006497 320 EIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 320 ~~~~~h~~~V~~l~~s~ 336 (643)
.....+.+.+...+|++
T Consensus 411 ~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 411 LPLPTAQGEVREPSWSP 427 (430)
T ss_pred EECcCCCCCcCCCccCC
Confidence 22223445667777775
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-12 Score=132.72 Aligned_cols=247 Identities=16% Similarity=0.161 Sum_probs=181.1
Q ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeee
Q 006497 113 HDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~-sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~ 191 (643)
+....+.|..++||+||+ +|...-.|++||+..-.+..........|.-.-++.|-..++.-..|.+|.+-.--.....
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 667788999999999764 6777889999999877766554434444554455555566677777877766543211111
Q ss_pred eEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
..+ ...-.+++++.-.--|++++....|+-++++.|+.+..+......+++|..++...+|++|+.+|.|.+||.++
T Consensus 130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 111 12234566665444455555667799999999999999988888999999999989999999999999999998
Q ss_pred CeEEEEeecCC-----------CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC--C
Q 006497 272 MKELESFRGHR-----------KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--G 338 (643)
Q Consensus 272 ~~~~~~~~~~~-----------~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d--~ 338 (643)
...+.++.... ..|+++.|+. ++-.+++|+.+|.|.|||++....+..-...-..+|..+.|... .
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 77766665322 2499999996 68899999999999999999988877666555678999999765 3
Q ss_pred CEEEEEECCCeEEEEecCCCCCcccc
Q 006497 339 YLLCSGSNDHTTKFWCRNRPGDTARD 364 (643)
Q Consensus 339 ~~L~sgs~Dg~V~iWd~~~~~~~~~~ 364 (643)
+.|++. +...++|||-......+..
T Consensus 286 ~~v~S~-Dk~~~kiWd~~~Gk~~asi 310 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWDECTGKPMASI 310 (703)
T ss_pred ceEEec-chHHhhhcccccCCceeec
Confidence 555554 4678999998665544433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-12 Score=122.64 Aligned_cols=155 Identities=19% Similarity=0.332 Sum_probs=112.4
Q ss_pred EEEEEcCCCCEEEEEEC----------CCcEEEEeCCC-CceEEEEcc-CCCCEEEEEEcCCCCEEEEE--eCCCcEEEE
Q 006497 76 NRVLWTPTGRRLITGSQ----------SGEFTLWNGQS-FNFEMILQA-HDHAIRSMVWSHNDNWMVSG--DDGGAIKYW 141 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~----------dg~I~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~~~~~L~sg--~~dg~V~iw 141 (643)
..+.|+++|++|++-.. -+...||.++. ......+.. ..+.|.+++|+|+++.||+. ..+..|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 35789999988775433 13345554422 222333332 34579999999999987654 456799999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d---g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
|++ .+.+..+ ....+..+.|+|+|++|++++.+ |.|.+||+++.+.+.... | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATT 163 (194)
T ss_pred cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEe
Confidence 997 4444443 45678899999999999998754 679999999887776665 3 35789999999999999874
Q ss_pred ------CCcEEEEECCCCceeEEe
Q 006497 219 ------DSLVKLWDAKSGRELCSF 236 (643)
Q Consensus 219 ------dg~I~iwD~~~~~~~~~~ 236 (643)
|+.++||+.. |+.+...
T Consensus 164 ~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ccceeccccEEEEEec-CeEeEec
Confidence 6789999985 6665543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-10 Score=119.34 Aligned_cols=261 Identities=11% Similarity=0.155 Sum_probs=171.2
Q ss_pred CCeEEEEEcCCCCEEEEEEC----CCcEEEEeCCCC--c--eEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 006497 73 CSINRVLWTPTGRRLITGSQ----SGEFTLWNGQSF--N--FEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQN 143 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~----dg~I~iwd~~~~--~--~~~~l~~h~~~V~~l~~s~~~~~L~sg~~-dg~V~iwd~ 143 (643)
.....+++++++++|++..+ ++.|..|++... + .+............+++++++++|+++.. +|.|.++++
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 34566889999999999877 468888886653 3 23333334456678999999999998874 899999999
Q ss_pred CCC-ceEEe---e----------cCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCe--e--eeEee-ccCCCeEE
Q 006497 144 NMN-NVKAN---K----------SAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQ--E--ERSLT-GHGWDVKS 203 (643)
Q Consensus 144 ~~~-~~~~~---~----------~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~--~--~~~~~-~~~~~V~~ 203 (643)
+.. .+... + ........++.+++|++++++++. ...|++|+++... . ...+. .....-+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 873 33222 1 123456789999999998887654 4589999997654 2 12222 34556889
Q ss_pred EEEcCCCCEEEEEEC-CCcEEEEECC--CCc--eeEEecc------CCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 006497 204 VDWHPTKSLLVSGGK-DSLVKLWDAK--SGR--ELCSFHG------HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 271 (643)
Q Consensus 204 l~~sp~~~~l~sgs~-dg~I~iwD~~--~~~--~~~~~~~------~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~ 271 (643)
++|+++++++++..+ +++|.+|++. +++ .+..+.. .......|++++|+++|+++. .++.|.+|+++.
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 999999998876654 6779999988 332 2222221 122578999999999988876 456899999942
Q ss_pred --C--eEEEEeecCCCCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCCcceEEEe--cccCcceEEEEE
Q 006497 272 --M--KELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAW 334 (643)
Q Consensus 272 --~--~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~ 334 (643)
+ +.+..+.......+.+++++ ++++|+++. .++.|.+|+++...-.+... ...-....||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 34555555556689999999 566666555 66799999885333222221 123345566665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=126.76 Aligned_cols=251 Identities=15% Similarity=0.274 Sum_probs=194.7
Q ss_pred eEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceEEee-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEE
Q 006497 106 FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183 (643)
Q Consensus 106 ~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd-~~~~~~~~~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iw 183 (643)
++..+++|.+.|++....+...-+++.+.|.+++||- .+.++.-..+ ......++++.+..+...|+++-.+|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 4566788999999988888888899999999999994 3334333222 2345678999999999999999999999988
Q ss_pred EC----CCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEE
Q 006497 184 DF----ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 184 dl----~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 259 (643)
.+ ++....+....|...|..+.|+-...++++.+.|..+.---.+++..+..+.- ....+++.+.-. +.++|.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~fvGd 172 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAFVGD 172 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEEecc
Confidence 66 34445566678999999999998889999999998776555555554432210 111122222211 566677
Q ss_pred CCCcEEEEEC--CCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC
Q 006497 260 KDQIIKLYDI--RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 260 ~dg~I~iwd~--~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 337 (643)
..|.|.+..+ .....+.++.+|...+++++|.+ ...+|.+|..|..|.+||+...+.......+|.+.|..++....
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~ 251 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQH 251 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhh
Confidence 7777766554 34566888999999999999999 88999999999999999998888888888889999999999888
Q ss_pred CCEEEEEECCCeEEEEecCCCCC
Q 006497 338 GYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 338 ~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
-+.|++++.||.|.+|+++-...
T Consensus 252 t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 252 TRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred heeeeeccCCCeEEEEeccceee
Confidence 89999999999999999976444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-11 Score=131.56 Aligned_cols=234 Identities=14% Similarity=0.083 Sum_probs=148.5
Q ss_pred cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceEEeecCCCCCeEEEEEecCCCEE
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~-dg--~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l 171 (643)
.|.++|.+..+. +.+..+...+.+..|++||++|+..+. ++ .|.+||+.+++.... ..........+|++|++.|
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCEE
Confidence 577778665443 445556778899999999998887654 33 588889888765433 2223344578999999987
Q ss_pred EE-EeCCCc--EEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCceeEEeccCCCcEEE
Q 006497 172 CS-CSDDTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK-DS--LVKLWDAKSGRELCSFHGHKNMVLC 245 (643)
Q Consensus 172 ~s-~s~dg~--I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~-dg--~I~iwD~~~~~~~~~~~~~~~~i~~ 245 (643)
+. .+.++. |++||+++++. ..+..+.......+|++|++.|+..+. ++ .|+++|+++++... +.........
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~ 354 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLG 354 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcC
Confidence 65 455664 88889877654 444445556678899999998877654 33 47777888776433 2222223456
Q ss_pred EEEcCCCCEEEEEECC-C--cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCc--EEEEECCCCcceEE
Q 006497 246 VKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGS--IFHWLVGHETPQVE 320 (643)
Q Consensus 246 l~~sp~g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~--I~iwd~~~~~~~~~ 320 (643)
.+|++||++|+..+.+ + .|.++|+.+++.. .+... .......|++++..++++...++. +++++.+ +.. ..
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~-~~ 430 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRF-KA 430 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCc-eE
Confidence 7899999998876653 3 4666788776543 22222 122345899944444445555554 5556653 222 23
Q ss_pred EecccCcceEEEEEcC
Q 006497 321 IHNVHDNTVWDLAWHP 336 (643)
Q Consensus 321 ~~~~h~~~V~~l~~s~ 336 (643)
....+.+.+...+|++
T Consensus 431 ~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 431 RLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECcCCCCCcCCCccCC
Confidence 3333455677778876
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-11 Score=127.87 Aligned_cols=188 Identities=18% Similarity=0.227 Sum_probs=155.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEeecC---CCCCeEEEEEe--------------------cCCCEEEEEeCCCcEE
Q 006497 125 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA---HKESVRDLSFC--------------------RTDLKFCSCSDDTTVK 181 (643)
Q Consensus 125 ~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~---~~~~I~~l~~s--------------------~d~~~l~s~s~dg~I~ 181 (643)
...++|....||.++|||...++....+.. ..+..++..|. .|...|+-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 356899999999999999998887766632 23344454442 1334577788899999
Q ss_pred EEECCCCeeeeEee--ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEE
Q 006497 182 VWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 182 iwdl~~~~~~~~~~--~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 259 (643)
+|++..++....+. .|.+.|+++.++.+-..|.+++.|+.+..|+..+.+.++.++.....+.++++++|+..|++++
T Consensus 84 ~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 84 LYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred EEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc
Confidence 99999988877776 5888999999998889999999999999999999999999999899999999999999999986
Q ss_pred CCCcEEEEECCCCeEEEEeecCCCCeEEEEEecC-----CCCEEEEEeCCCcEEEEECCC
Q 006497 260 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF-----HEEYFVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 260 ~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-----~~~~l~sgs~dg~I~iwd~~~ 314 (643)
+.|++||+++++.+..|.+|.+.|.++.|.-. +..+|.+...+..+.+|-++.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 57999999999999999999999999999873 234455555667788887754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.6e-11 Score=128.09 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=156.9
Q ss_pred CCCCEEEEEECCCcEEEEeCCCCceEEEEcc---CCCCEEEEEEc--------------------CCCCEEEEEeCCCcE
Q 006497 82 PTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWS--------------------HNDNWMVSGDDGGAI 138 (643)
Q Consensus 82 pdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~s--------------------~~~~~L~sg~~dg~V 138 (643)
+-..++|....||.++|||..+++....+.. -.+..++..|. .|...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3457899999999999999998887666542 23445555552 133578889999999
Q ss_pred EEEECCCCceEEeec--CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEE
Q 006497 139 KYWQNNMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 139 ~iwd~~~~~~~~~~~--~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sg 216 (643)
.+|++..+++...+. .|.+.|.++.++.+-..|.+++.|+.+..|+...+..++..+.....+.++++++|++.++++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999999999887774 788999999999998999999999999999999999999999888899999999999999988
Q ss_pred ECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC-----CCEEEEE-ECCCcEEEEECCC
Q 006497 217 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN-----GNWVLTA-SKDQIIKLYDIRA 271 (643)
Q Consensus 217 s~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~-----g~~l~s~-s~dg~I~iwd~~~ 271 (643)
+ +.|++||+++++.+..|.+|.+.|+++.|-.+ |.++++. ..+..|.+|-++.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 7 68999999999999999999999999999876 5666544 4556677776643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-11 Score=132.56 Aligned_cols=220 Identities=15% Similarity=0.146 Sum_probs=149.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEE-EeCCC--cEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGG--AIKY 140 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~s-g~~dg--~V~i 140 (643)
.+..+...+...+|++||+.|+..+.+ ..|.+||+.+++... +....+.+...+|++||+.|+. ...++ .|++
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~ 271 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYV 271 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEE
Confidence 345567788999999999999876643 369999998876544 3334455667899999998874 44455 5888
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-C--CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D--TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-d--g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
||+++++... +..+........|++|++.|+..+. + ..|+++|+.+++.... ...........|++|++.|+...
T Consensus 272 ~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 272 MDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred EECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEE
Confidence 8998876554 4445556677899999998776654 3 3588888877654332 22223344678999999988876
Q ss_pred CCC---cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 006497 218 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 218 ~dg---~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~I~~l~~s 291 (643)
.++ .|.+||+.+++.. .+.. ........|++||++|+..+.+ ..|.++++. +.....+....+.+...+|+
T Consensus 350 ~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws 426 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWS 426 (430)
T ss_pred ccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccC
Confidence 543 5889999887643 3332 2223356899999998877644 346777775 33344454455567777777
Q ss_pred c
Q 006497 292 P 292 (643)
Q Consensus 292 p 292 (643)
+
T Consensus 427 ~ 427 (430)
T PRK00178 427 P 427 (430)
T ss_pred C
Confidence 6
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-11 Score=125.53 Aligned_cols=259 Identities=11% Similarity=0.038 Sum_probs=173.5
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEE
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 163 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 163 (643)
+..|++++.+|.|..+|..+++.+-.............. +++.+++++.++.|..+|.++++.+...... ..+.+..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCC
Confidence 567889999999999999999887766544332223332 4678888999999999999999887665432 2232221
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCe-----EEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc
Q 006497 164 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238 (643)
Q Consensus 164 ~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V-----~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~ 238 (643)
.. .+..++.++.++.|+.||.++++.+..+......+ .+..+. +..++++..++.|..+|+++++.+.....
T Consensus 142 ~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 142 LV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred EE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 12 34567777889999999999988877665432211 111222 34678888899999999999987765431
Q ss_pred CCC----c------E-EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcE
Q 006497 239 HKN----M------V-LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSI 307 (643)
Q Consensus 239 ~~~----~------i-~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I 307 (643)
... . + .+..+ .+..+++++.++.++.||.++++.+...... ....... .+..|++++.||.|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~~---~~~~vyv~~~~G~l 291 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPAV---DDNRLYVTDADGVV 291 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCceE---eCCEEEEECCCCeE
Confidence 100 0 0 11112 3567888889999999999999887766521 1222333 35677777889999
Q ss_pred EEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 308 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+.+|..+++.+.+........+.+... .+..|++++.||.|++||.+.
T Consensus 292 ~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~t 339 (377)
T TIGR03300 292 VALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRED 339 (377)
T ss_pred EEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCC
Confidence 999998877665542211222233333 366889999999999999754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-11 Score=131.97 Aligned_cols=218 Identities=17% Similarity=0.173 Sum_probs=149.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEE-EeCCC--cEEE
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGG--AIKY 140 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~s-g~~dg--~V~i 140 (643)
.+..+...+.+.+|++||++|+.+..+ ..|++||+.+++... +..+.+.+.+++|++|++.|+. .+.++ .|++
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~ 262 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYV 262 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEE
Confidence 344566678999999999999987654 479999998876544 3345666778999999987764 44444 5888
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d-g--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
||+.++..... ..+........|++|++.|+.++.. + .|++||+.+++. ..+..+...+..+.|++++++|+.++
T Consensus 263 ~d~~~~~~~~l-~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 263 MDLDGKQLTRL-TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred EECCCCCEEEC-CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEE
Confidence 89887765443 3444445677899999988776543 3 688888876654 33444555677889999999999988
Q ss_pred CCC---cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEeecCCCCeEEEEE
Q 006497 218 KDS---LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRAMKELESFRGHRKDVTALAW 290 (643)
Q Consensus 218 ~dg---~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~I~~l~~ 290 (643)
.++ .|.+||+.++.. ..+... .......|++|+++|+..+.++ .+.+.+.. ++....+......+..++|
T Consensus 341 ~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred ccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 776 799999987543 333322 2345678999999888877654 35555543 4444444433444444444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.8e-10 Score=116.31 Aligned_cols=257 Identities=10% Similarity=0.021 Sum_probs=167.6
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCceEEeecCC-------C
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD----------GGAIKYWQNNMNNVKANKSAH-------K 156 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~----------dg~V~iwd~~~~~~~~~~~~~-------~ 156 (643)
+.|.|.|..+++.+..+..-...- .+ +++|++.|+++.. +..|.+||..+.+.+..+..- .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999888887544433 24 9999998887665 788999999999998877532 2
Q ss_pred CCeEEEEEecCCCEEEEEe-C-CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC-Ccee
Q 006497 157 ESVRDLSFCRTDLKFCSCS-D-DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS-GREL 233 (643)
Q Consensus 157 ~~I~~l~~s~d~~~l~s~s-~-dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~-~~~~ 233 (643)
..-..+++++|+++|++.. . +..|.++|+.+.+.+..+..-. ...-...+.+..+ +-+.||......+.+ ++..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~ 181 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPK 181 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceE
Confidence 2344789999999988776 3 6899999999998888776422 2222333322222 223455544443332 2211
Q ss_pred -E---EeccCCCcE-EEEEEcC-CCCEEEEEECCCcEEEEECCCC-----eEEEEeec-------CCCCeEEEEEecCCC
Q 006497 234 -C---SFHGHKNMV-LCVKWNQ-NGNWVLTASKDQIIKLYDIRAM-----KELESFRG-------HRKDVTALAWHPFHE 295 (643)
Q Consensus 234 -~---~~~~~~~~i-~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~-----~~~~~~~~-------~~~~I~~l~~sp~~~ 295 (643)
. .+...+..+ ..-.|.+ +++++++..+ |.|.+.|+... +.+..+.. ....+.-++++++++
T Consensus 182 ~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 182 IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 1 111101000 0013445 7888877766 99999996432 22222211 122344599998444
Q ss_pred CEEEEEe---------CCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCC-EEEEEE-CCCeEEEEecCCC
Q 006497 296 EYFVSGS---------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNRP 358 (643)
Q Consensus 296 ~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~-~L~sgs-~Dg~V~iWd~~~~ 358 (643)
.+++... ..+.|.++|..+.+.+..+..+ ..++.+++++|++ +|++.. .++.|.+.|....
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 4444331 2257999999888887777764 4799999999999 888766 5788999998653
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-11 Score=131.18 Aligned_cols=219 Identities=14% Similarity=0.125 Sum_probs=146.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEECC-C--cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEE-EeCCCc--EEEE
Q 006497 68 LNKNRCSINRVLWTPTGRRLITGSQS-G--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGA--IKYW 141 (643)
Q Consensus 68 l~~h~~~I~~i~~spdg~~L~tgs~d-g--~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~s-g~~dg~--V~iw 141 (643)
+..+...+.+..|+|||++|+..+.+ + .|++||+.+++... +....+.....+|++|++.|+. .+.++. |.+|
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 33445567899999999999876543 2 58889998876533 3323344557899999998765 556665 7777
Q ss_pred ECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
|+++++... +..+.......+|++|++.|+..+. ++ .|+++|+++++... +..........+|++|+++|+..+.
T Consensus 292 dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 292 DIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSMIMVNR 369 (448)
T ss_pred ECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEEEEEEe
Confidence 888776544 3445556678899999998876654 33 57777887665433 2222233446789999998887665
Q ss_pred C-C--cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC-C--cEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 006497 219 D-S--LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q--IIKLYDIRAMKELESFRGHRKDVTALAWHP 292 (643)
Q Consensus 219 d-g--~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp 292 (643)
+ + .|.++|+++++.. .+... .......|++|++.|+..+.+ + .|.++|. +++....+......+...+|+|
T Consensus 370 ~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred cCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 3 3 4666788877643 33322 122345899999988776543 3 3677776 4666666665666777888876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-10 Score=133.77 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=196.8
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEE----eCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLW----NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN- 144 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iw----d~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~- 144 (643)
...+.|.++.|-.|...|+++..+|.|.++ |..+.. +.....-+..|.+++||||+..|+..+.+++|.+.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 345789999999999999999999999999 555433 33333457899999999999999999999998877421
Q ss_pred --------------C--------CceEEe-------------------------ecCCCCCeEEEEEecCCCEEEEEeC-
Q 006497 145 --------------M--------NNVKAN-------------------------KSAHKESVRDLSFCRTDLKFCSCSD- 176 (643)
Q Consensus 145 --------------~--------~~~~~~-------------------------~~~~~~~I~~l~~s~d~~~l~s~s~- 176 (643)
. |+.... +. ..+.-..|+|-.||.++|+.+.
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence 0 000000 01 2234457889999999988764
Q ss_pred --C---CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCceeEEe----ccCCCcEE
Q 006497 177 --D---TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSF----HGHKNMVL 244 (643)
Q Consensus 177 --d---g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~---dg~I~iwD~~~~~~~~~~----~~~~~~i~ 244 (643)
+ ..|+||+-+ +....+.+...+--.+++|-|.|++||+.-. ...|.+|.-+ |-.-..| ......|.
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~ 308 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVI 308 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCCceee
Confidence 2 579999854 5444443333344468999999999998865 3457777743 4332223 23456799
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEeec-CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC----CCc-
Q 006497 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRG-HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HET- 316 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~-~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~----~~~- 316 (643)
.+.|+.|+..|++...|. |.+|-..+..- ..++.. ....+..+.|++.+...|...+.+|.+..+++. ...
T Consensus 309 ~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~ 387 (928)
T PF04762_consen 309 ELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPG 387 (928)
T ss_pred EEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCC
Confidence 999999999999987665 99999887653 223332 233455699999777778888877777655441 110
Q ss_pred ------ceEEEe-----------------------cccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCC
Q 006497 317 ------PQVEIH-----------------------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 317 ------~~~~~~-----------------------~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~ 359 (643)
...... -.....|.+++|++++..+++...||.|.+|+.+...
T Consensus 388 ~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 388 SSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 011111 0124579999999998889999999999999965543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-10 Score=119.55 Aligned_cols=276 Identities=14% Similarity=0.171 Sum_probs=194.1
Q ss_pred CCeEEEEEcCCCCEEEEEECC---------------CcEEEEeCCCCceEEEEccCCCC--EE-EEEEcCCCCEEEEEeC
Q 006497 73 CSINRVLWTPTGRRLITGSQS---------------GEFTLWNGQSFNFEMILQAHDHA--IR-SMVWSHNDNWMVSGDD 134 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~d---------------g~I~iwd~~~~~~~~~l~~h~~~--V~-~l~~s~~~~~L~sg~~ 134 (643)
..|..+.|+|.+++|.+-+.. ..+.|||+.++.++..+..-... .+ -+.|+.+++++|-. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 358999999999999986543 34999999999999988876655 55 67899888877644 3
Q ss_pred CCcEEEEECCCCceE-EeecC-CCCCeEEEEEecCCC--EEEE-----EeCCCcEEEEECCCCeeeeEeeccCCCeEEEE
Q 006497 135 GGAIKYWQNNMNNVK-ANKSA-HKESVRDLSFCRTDL--KFCS-----CSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 205 (643)
Q Consensus 135 dg~V~iwd~~~~~~~-~~~~~-~~~~I~~l~~s~d~~--~l~s-----~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~ 205 (643)
...++|+++ +.... ..+.. ....|....|++.++ .||. ...++.++||.+.....+.+..-....-..+.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk 229 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK 229 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence 356999987 33322 11111 236688889998643 3443 34578999999987666554443333445788
Q ss_pred EcCCCCEEEEEE-----------CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEE--CCCcEEEEECCCC
Q 006497 206 WHPTKSLLVSGG-----------KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS--KDQIIKLYDIRAM 272 (643)
Q Consensus 206 ~sp~~~~l~sgs-----------~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s--~dg~I~iwd~~~~ 272 (643)
|...|++|++-. .+..++|++++.. .+.......+.|...+|.|+++.+++.+ .+-.+.++|++..
T Consensus 230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred EecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceeccccccceeeeecccCCceeEEecccccceeecccccc
Confidence 998888766432 1246889998843 3333335678999999999888776554 7889999999865
Q ss_pred eEEEEeecCCCCeEEEEEecCCCCEEEEEeCC---CcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEE----
Q 006497 273 KELESFRGHRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS---- 345 (643)
Q Consensus 273 ~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs---- 345 (643)
.. +......-+.+.|+| .+++++.++.| |.|.+||............+ ....-+.|++|+.++.+..
T Consensus 309 -l~--~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~k 382 (561)
T COG5354 309 -LR--FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSEK 382 (561)
T ss_pred -eE--EecCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCcc
Confidence 22 233445556788999 78888876655 68999999777666644432 2345568999999887754
Q ss_pred --CCCeEEEEecCC
Q 006497 346 --NDHTTKFWCRNR 357 (643)
Q Consensus 346 --~Dg~V~iWd~~~ 357 (643)
.|..|+|||+..
T Consensus 383 ~~~Dn~i~l~~v~g 396 (561)
T COG5354 383 LRVDNSIKLWDVYG 396 (561)
T ss_pred cccCcceEEEEecC
Confidence 388899999854
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.9e-11 Score=126.27 Aligned_cols=222 Identities=13% Similarity=0.119 Sum_probs=144.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEE---EEECCC--cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC-CC----c
Q 006497 68 LNKNRCSINRVLWTPTGRRLI---TGSQSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG----A 137 (643)
Q Consensus 68 l~~h~~~I~~i~~spdg~~L~---tgs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~-dg----~ 137 (643)
+......+.+-+|+|||+.++ +...+| .|++.++.+++.... ....+.....+|+|||+.|+.... +| .
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~ 258 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLF 258 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCccee
Confidence 334455667789999997532 444443 577778887765443 334555667899999998886553 23 3
Q ss_pred EEEEECCCC---ceEEeecCCCCCeEEEEEecCCCEEEEEe-CCCcEEEE--ECCC-CeeeeEeeccCCCeEEEEEcCCC
Q 006497 138 IKYWQNNMN---NVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVW--DFAR-CQEERSLTGHGWDVKSVDWHPTK 210 (643)
Q Consensus 138 V~iwd~~~~---~~~~~~~~~~~~I~~l~~s~d~~~l~s~s-~dg~I~iw--dl~~-~~~~~~~~~~~~~V~~l~~sp~~ 210 (643)
+.+|++..+ +...............+|++|++.|+..+ .++...|| ++.. +.....+......+....|+||+
T Consensus 259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG 338 (428)
T PRK01029 259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG 338 (428)
T ss_pred EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence 444676542 33333333334456789999999877665 45654444 5532 23344454455567889999999
Q ss_pred CEEEEEECC---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeEEEEeecCCCC
Q 006497 211 SLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKD 284 (643)
Q Consensus 211 ~~l~sgs~d---g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~ 284 (643)
+.|+..+.+ ..|.+||+.+++... +......+....|++||++|+.... +..|.+||+..++..... .....
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~ 416 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGE 416 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCc
Confidence 988877653 369999999886543 3333445778999999998876543 346888998876654433 34455
Q ss_pred eEEEEEec
Q 006497 285 VTALAWHP 292 (643)
Q Consensus 285 I~~l~~sp 292 (643)
+...+|+|
T Consensus 417 ~~~p~Ws~ 424 (428)
T PRK01029 417 KRFPSWGA 424 (428)
T ss_pred ccCceecC
Confidence 67778876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-10 Score=124.13 Aligned_cols=238 Identities=14% Similarity=0.133 Sum_probs=148.9
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEE---EEEeCCC--cEEEEECCCCceEEeecCCCCCeEEEEEecCC
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM---VSGDDGG--AIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 168 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L---~sg~~dg--~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~ 168 (643)
..|.+.|.+..+.. .+......+.+-+|+|||+.+ ++...+| .|.+.++.+++..... .........+|+||+
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt-~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKIL-ALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEee-cCCCCccceEECCCC
Confidence 36777787665543 344455667788999999752 3454444 4777788877654433 344556678999999
Q ss_pred CEEEEEeC-----CCcEEEEECCCC--eeeeEee-ccCCCeEEEEEcCCCCEEEEEE-CCCcEE--EEECCC-CceeEEe
Q 006497 169 LKFCSCSD-----DTTVKVWDFARC--QEERSLT-GHGWDVKSVDWHPTKSLLVSGG-KDSLVK--LWDAKS-GRELCSF 236 (643)
Q Consensus 169 ~~l~s~s~-----dg~I~iwdl~~~--~~~~~~~-~~~~~V~~l~~sp~~~~l~sgs-~dg~I~--iwD~~~-~~~~~~~ 236 (643)
+.|+..+. |..+.+||+..+ .....+. .........+|+|||+.|+..+ .+|... ++++.. +.....+
T Consensus 243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l 322 (428)
T PRK01029 243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL 322 (428)
T ss_pred CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence 98887653 223444776542 1222333 2223456789999999877765 456544 445542 2334445
Q ss_pred ccCCCcEEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEE-EEeC--CCcEEEE
Q 006497 237 HGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSL--DGSIFHW 310 (643)
Q Consensus 237 ~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~-sgs~--dg~I~iw 310 (643)
......+....|+|||++|+..+.+ ..|.+||+.+++... +......+....|++ +++.|+ +... +..|++|
T Consensus 323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECC-CCCEEEEEECCCCCceEEEE
Confidence 4445567889999999998877643 369999998876543 332344677899999 566555 4433 3467788
Q ss_pred ECCCCcceEEEecccCcceEEEEEcCC
Q 006497 311 LVGHETPQVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 311 d~~~~~~~~~~~~~h~~~V~~l~~s~d 337 (643)
|++..+.. .+.. ..+.+...+|++-
T Consensus 401 dl~~g~~~-~Lt~-~~g~~~~p~Ws~~ 425 (428)
T PRK01029 401 SLITKKTR-KIVI-GSGEKRFPSWGAF 425 (428)
T ss_pred ECCCCCEE-Eeec-CCCcccCceecCC
Confidence 88655432 2222 3445667778764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-10 Score=121.22 Aligned_cols=255 Identities=13% Similarity=0.044 Sum_probs=169.4
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCe---
Q 006497 83 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 159 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I--- 159 (643)
++..+++++.++.|+.+|.++++.+...... +.+.+.... .++.++.++.++.|..||.++++.+.........+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 4667888899999999999999887665532 223221111 34577778889999999999998877654332221
Q ss_pred --EEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCC----C------e-EEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 160 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW----D------V-KSVDWHPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 160 --~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~----~------V-~~l~~sp~~~~l~sgs~dg~I~iwD 226 (643)
.+..+. + ..++.+..++.|..+|+++++.+........ . + .+..+ .+..+++++.+|.++.||
T Consensus 182 ~~~sp~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 182 GSASPVIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALD 257 (377)
T ss_pred CCCCCEEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence 111222 2 4677788889999999988876654331100 0 1 11112 256788888899999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCC-CCeEEEEEecCCCCEEEEEeCCC
Q 006497 227 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDG 305 (643)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~~l~sgs~dg 305 (643)
.++++.+...... ....... ++..|++++.||.|..+|..+++.+.+..... ........ .+..|++++.+|
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G 330 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEG 330 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCC
Confidence 9999887766521 1222222 46778888899999999999999887663222 22233333 356888889999
Q ss_pred cEEEEECCCCcceEEEecccCcce-EEEEEcCCCCEEEEEECCCeEEEE
Q 006497 306 SIFHWLVGHETPQVEIHNVHDNTV-WDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 306 ~I~iwd~~~~~~~~~~~~~h~~~V-~~l~~s~d~~~L~sgs~Dg~V~iW 353 (643)
.|+++|.++++.+..... +...+ .+..+. +..|+.++.||.|..|
T Consensus 331 ~l~~~d~~tG~~~~~~~~-~~~~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 331 YLHWLSREDGSFVARLKT-DGSGIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEECCCCCEEEEEEc-CCCccccCCEEE--CCEEEEEeCCceEEEe
Confidence 999999988877665543 23222 233333 3458889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-10 Score=120.45 Aligned_cols=280 Identities=17% Similarity=0.315 Sum_probs=193.2
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEE
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-----------GGAIKYWQ 142 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~-----------dg~V~iwd 142 (643)
.=+-+.|||.|.||++-..-| |.+|-.++...++.+. | -.|.-+.|||+.+||+|-+. ...++|||
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence 346789999999999998776 8899888877666664 4 45788999999999998652 25699999
Q ss_pred CCCCceEEeecCCC--CCe-EEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC
Q 006497 143 NNMNNVKANKSAHK--ESV-RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 143 ~~~~~~~~~~~~~~--~~I-~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d 219 (643)
+.++.+...+.... ..+ --+.||.|++++|.-.. ..|.||+..+...+..-...-..|....|+|.+++||.=...
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred ccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 99999888775522 222 34689999999887765 679999987644433222234578899999999888765432
Q ss_pred -----CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeEEEEeecCCCC
Q 006497 220 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK----------DQIIKLYDIRAMKELESFRGHRKD 284 (643)
Q Consensus 220 -----g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~~~~ 284 (643)
..+.|..+-+++.+++..-+.-.=..+-|-.+|.+|++--. -..+.|+.++....-.....-...
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~ 447 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKES 447 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchh
Confidence 35777888888777766555444455777788888875421 113556666654443333335677
Q ss_pred eEEEEEecCCCCEEEEEeC--CCcEEEEECCCC-cceEEEecccCcceEEEEEcCCCCEEEEEE---CCCeEEEEecCC
Q 006497 285 VTALAWHPFHEEYFVSGSL--DGSIFHWLVGHE-TPQVEIHNVHDNTVWDLAWHPIGYLLCSGS---NDHTTKFWCRNR 357 (643)
Q Consensus 285 I~~l~~sp~~~~~l~sgs~--dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs---~Dg~V~iWd~~~ 357 (643)
|...+|-|.++++.+..+. ..++.+|.++.. .....+........+.+.|+|.|++++.+. ..|.+.++|.+.
T Consensus 448 vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 448 VIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred eeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 8999999944444333333 357889988732 222222222245678899999999988754 578999999874
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-11 Score=113.20 Aligned_cols=242 Identities=13% Similarity=0.120 Sum_probs=167.6
Q ss_pred CCcEEEEECCCCceEE---eecCCCCCeEEEEEec---CCC-EEEEEeCCCcEEEEECCCCeeeeEeeccC------CCe
Q 006497 135 GGAIKYWQNNMNNVKA---NKSAHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFARCQEERSLTGHG------WDV 201 (643)
Q Consensus 135 dg~V~iwd~~~~~~~~---~~~~~~~~I~~l~~s~---d~~-~l~s~s~dg~I~iwdl~~~~~~~~~~~~~------~~V 201 (643)
.|.+.+|+++..+... ........+..+.|+. ++. .++-+..+|.|.++..........+.+.. ...
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678888877655433 2233455677777764 333 46667778999999876655554444321 124
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCce--eEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECC-CCeEEEE
Q 006497 202 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIR-AMKELES 277 (643)
Q Consensus 202 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~--~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~-~~~~~~~ 277 (643)
.++.|+..+..++++..+|.+.+.+...... +.+++.|+-+++...|+. +.+++++|+.|+.+..||+| .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 5788998888999999999999776655543 347889999999999987 55789999999999999999 4444444
Q ss_pred -eecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc-eEEEecccCcceEEEEEcCCC-CEEEEEECCCeEEEEe
Q 006497 278 -FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP-QVEIHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWC 354 (643)
Q Consensus 278 -~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~d~-~~L~sgs~Dg~V~iWd 354 (643)
.+.|...|.+|.-++....+|++|+.|-.|++||.++-.+ +.... -.+.||.+.++|.- ..|+.++.-+-++|-+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 5678899999999987888999999999999999985443 33332 24789999999863 2333333444467777
Q ss_pred cCCCCCc---cccccccCCCcccccee
Q 006497 355 RNRPGDT---ARDKFNMGQNQGYGEQN 378 (643)
Q Consensus 355 ~~~~~~~---~~~~~~~~~~~~~~~~~ 378 (643)
.+....+ ....++.+....|+..+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DW 309 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDW 309 (339)
T ss_pred ecccccchheeeeccccccceeecccc
Confidence 7554443 22233344444455444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=110.31 Aligned_cols=172 Identities=13% Similarity=0.137 Sum_probs=135.1
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceEEeecCCCCCeEE
Q 006497 83 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-AIKYWQNNMNNVKANKSAHKESVRD 161 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg-~V~iwd~~~~~~~~~~~~~~~~I~~ 161 (643)
+|++++..+ .|...|.+...+-.++ -+|.+.|.-..+.-+++-++.|..|| .|-|+|.++++.... ...-+.|.+
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~a 406 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEA 406 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEE
Confidence 567777777 4567776655443333 25677788888888888999999999 899999998876655 456678999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCC----cEEEEECCCCceeEEec
Q 006497 162 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFH 237 (643)
Q Consensus 162 l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg----~I~iwD~~~~~~~~~~~ 237 (643)
+..+++|++++++.....|.+.|++++.....-+...+-|+.++|++++++||.+--+| .|++||+..++......
T Consensus 407 v~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999999999899999999999877666666778899999999999999987666 58999999877554332
Q ss_pred cCCCcEEEEEEcCCCCEEEEEE
Q 006497 238 GHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 238 ~~~~~i~~l~~sp~g~~l~s~s 259 (643)
..+.=.+-+|.+|+++|..-+
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCCCCcEEEEEe
Confidence 333345678888999887654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.9e-12 Score=143.87 Aligned_cols=202 Identities=19% Similarity=0.332 Sum_probs=165.1
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~ 143 (643)
...++.+-..|.++.=+|...+.+||+.||.|++|....+..+..++ .....|+.+.|+.+|+.+..+..||.+.+|..
T Consensus 2201 ~~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2201 SVMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred eeEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 34556677789999999999999999999999999988777666654 23478999999999999999999999999998
Q ss_pred CCCceEEeecCCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCC-eeeeEeeccCCCeEEEEEcCCCCEEEEEECC
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARC-QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s---~dg~I~iwdl~~~-~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d 219 (643)
. .+.....+.|.....++.|.. ..+++++ +++.+.+||.... .....-+.|...++++++.|...+|++|+.+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred C-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCc
Confidence 7 455556678999999999876 5566654 4789999997332 1112227799999999999999999999999
Q ss_pred CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee
Q 006497 220 SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 220 g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
|.|++||++..+.++.+.. +. ...+|++++..|.|+||++.....+.++.
T Consensus 2358 G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999999998887777664 44 56789999999999999998877766654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.9e-10 Score=116.47 Aligned_cols=277 Identities=14% Similarity=0.259 Sum_probs=191.3
Q ss_pred CeEEEEEcCCCCEEEEEEC-----------CCcEEEEeCCCCceEEEEccCC--CCE-EEEEEcCCCCEEEEEeCCCcEE
Q 006497 74 SINRVLWTPTGRRLITGSQ-----------SGEFTLWNGQSFNFEMILQAHD--HAI-RSMVWSHNDNWMVSGDDGGAIK 139 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~-----------dg~I~iwd~~~~~~~~~l~~h~--~~V-~~l~~s~~~~~L~sg~~dg~V~ 139 (643)
.|.-+.|||+.+||+|-+. ...++|||+.+|.+.+.+.... ..+ --+.||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4889999999999998653 2469999999999888876532 222 23689999999997776 4599
Q ss_pred EEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-----CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEE
Q 006497 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-----dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~ 214 (643)
||+.....++......-..|....|+|.++.||--.. -..+.+..+-+.+.+++...+.-.=..|.|-.+|.+|+
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLc 409 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLC 409 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEE
Confidence 9988776655555556678999999999988875432 24677777777777776655543334567777888777
Q ss_pred EEEC----------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC---CCcEEEEECCC-C---eEEEE
Q 006497 215 SGGK----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRA-M---KELES 277 (643)
Q Consensus 215 sgs~----------dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~-~---~~~~~ 277 (643)
+--. -..+.|+.++....-......+..|...+|-|.|+.+++-+. ..++.+|.+++ . +.+..
T Consensus 410 vkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~ 489 (698)
T KOG2314|consen 410 VKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKE 489 (698)
T ss_pred EEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhh
Confidence 5421 123566766655433333335667899999999988776553 35788888773 2 22333
Q ss_pred eecCCCCeEEEEEecCCCCEEEEEe---CCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEEC------CC
Q 006497 278 FRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN------DH 348 (643)
Q Consensus 278 ~~~~~~~I~~l~~sp~~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~------Dg 348 (643)
+. ....+.+.|+| .+.+++.+. ..|.+.++|.+.......-...| ...+.+.|.|.|+++++++. |.
T Consensus 490 ~d--k~~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~ 565 (698)
T KOG2314|consen 490 LD--KKFANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDN 565 (698)
T ss_pred hc--ccccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhcccc
Confidence 33 35678899999 677766553 46899999987533322222223 35688999999999999876 44
Q ss_pred eEEEEec
Q 006497 349 TTKFWCR 355 (643)
Q Consensus 349 ~V~iWd~ 355 (643)
-.+||++
T Consensus 566 GYri~tf 572 (698)
T KOG2314|consen 566 GYRIFTF 572 (698)
T ss_pred ceEEEEe
Confidence 4566665
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-10 Score=115.36 Aligned_cols=282 Identities=13% Similarity=0.198 Sum_probs=195.3
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCC---------
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--------- 136 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg--------- 136 (643)
..+..-.-++..++|||.|++|++.... .|.+|+...+..+..+. ...|..+.|+|+++||++=....
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~s 102 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEIS 102 (561)
T ss_pred ccccccCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccC
Confidence 3344456689999999999999988765 48999988877555554 46789999999999999866443
Q ss_pred ------cEEEEECCCCceEEeecCCCCC--eE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-CCCeEEEEE
Q 006497 137 ------AIKYWQNNMNNVKANKSAHKES--VR-DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDW 206 (643)
Q Consensus 137 ------~V~iwd~~~~~~~~~~~~~~~~--I~-~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~V~~l~~ 206 (643)
.+.+||..++.++..+...... .. -+.|+-+++++|-. ....++|+++...-...-+... ...|....|
T Consensus 103 p~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 103 PFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred CccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccccCchhhccccceeeEEe
Confidence 4999999999999888665555 44 67888888876654 3457999997322121112211 246888899
Q ss_pred cCCCC--EEEE-----EECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEE-----------CCCcEEEEE
Q 006497 207 HPTKS--LLVS-----GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-----------KDQIIKLYD 268 (643)
Q Consensus 207 sp~~~--~l~s-----gs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-----------~dg~I~iwd 268 (643)
+|.++ .|++ ...++.++||.+-.++.+.+..-.+..-..+.|...|++|++-. .+..++|++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 98643 3443 34678899999987766655433333346788999898876532 234688888
Q ss_pred CCCCeEEEEeecCCCCeEEEEEecCCCCEEE-EEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC
Q 006497 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFV-SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 269 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
++... +.......+.|..++|.|....+.+ +|-.+-.+.++|++.. ....+. ...=+.+.|++.+++++.++-|
T Consensus 262 ~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 262 ITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC---CcccccccccCcccEEEEecCC
Confidence 87333 3333356789999999995444433 3356788999998765 222222 3345667899999998887765
Q ss_pred ---CeEEEEecC
Q 006497 348 ---HTTKFWCRN 356 (643)
Q Consensus 348 ---g~V~iWd~~ 356 (643)
|.|.+||..
T Consensus 337 nl~gni~i~~~~ 348 (561)
T COG5354 337 NLQGNIEIFDPA 348 (561)
T ss_pred ccccceEEeccC
Confidence 678899864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.3e-11 Score=114.19 Aligned_cols=275 Identities=18% Similarity=0.313 Sum_probs=178.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCc-----eEEEEccCC------------CCEEEEEEcCCC--CEEEE
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHD------------HAIRSMVWSHND--NWMVS 131 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~l~~h~------------~~V~~l~~s~~~--~~L~s 131 (643)
..+.|+++.|...|.+|++|...|.|.+|..+... ....++.|+ ..|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999755422 223344443 468889998764 46777
Q ss_pred EeCCCcEEEEECCCCceEEeecC---------CCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeeeEe-eccCCC
Q 006497 132 GDDGGAIKYWQNNMNNVKANKSA---------HKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL-TGHGWD 200 (643)
Q Consensus 132 g~~dg~V~iwd~~~~~~~~~~~~---------~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~-~~~~~~ 200 (643)
.+.|.+|++|.+....+...-.. ..+.+++.. .-.+--.+. |..|... ..+.+ ..|..-
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~----~l~lprls~hd~iiaa~------p~rvyaNaH~yh 174 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK----ELLLPRLSEHDEIIAAK------PCRVYANAHPYH 174 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHH----HhhcccccccceEEEec------cceeccccceeE
Confidence 88999999999876543322110 011111110 000000000 1111111 11111 357778
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCc---eeEEeccCC-----CcEEEEEEcC-CCCEEEEEECCCcEEEEECCC
Q 006497 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---ELCSFHGHK-----NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 201 V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~---~~~~~~~~~-----~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~ 271 (643)
|++|.|+.|...++++ .|=.|.+|+++--. .+..++.|. .-|++..|+| ..+.+...+..|.|++.|+|.
T Consensus 175 iNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 175 INSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 9999999888877776 46789999987432 223333333 3488899998 456677778899999999984
Q ss_pred CeE------EE----------EeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccC---------
Q 006497 272 MKE------LE----------SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD--------- 326 (643)
Q Consensus 272 ~~~------~~----------~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--------- 326 (643)
... +. -+..-...|..+.|++ ++++|++-+. -+|+|||++..+..+.....|.
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~ 331 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDV 331 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhh
Confidence 221 11 1122235678899998 8888888765 4899999988777666553332
Q ss_pred ---cce---EEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 327 ---NTV---WDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 327 ---~~V---~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
..| ..+.|+-|.+.+.+|+..+..-||-.+..
T Consensus 332 YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss 369 (460)
T COG5170 332 YENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS 369 (460)
T ss_pred hhccceeeeEEEEecCCcccccccccccceeeeccccC
Confidence 223 35788989999999999998888875443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-08 Score=101.48 Aligned_cols=266 Identities=12% Similarity=0.139 Sum_probs=180.5
Q ss_pred CCcEEEEeCCCCce---EEEEccCCCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC--CceEE--eecCCCCCeEEE
Q 006497 93 SGEFTLWNGQSFNF---EMILQAHDHAIRSMVWSHNDNWMVSGDDG---GAIKYWQNNM--NNVKA--NKSAHKESVRDL 162 (643)
Q Consensus 93 dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g~V~iwd~~~--~~~~~--~~~~~~~~I~~l 162 (643)
+.-|++|++++..- ...+-.+.+..+-|+|+++.++|.++..+ |.|..|.++. +++.. ........-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 45699998774221 11222466788899999999999988654 6787777664 44322 222333444889
Q ss_pred EEecCCCEEEEEeC-CCcEEEEECCC-Ceeee--EeeccCCC----------eEEEEEcCCCCEEEEEEC-CCcEEEEEC
Q 006497 163 SFCRTDLKFCSCSD-DTTVKVWDFAR-CQEER--SLTGHGWD----------VKSVDWHPTKSLLVSGGK-DSLVKLWDA 227 (643)
Q Consensus 163 ~~s~d~~~l~s~s~-dg~I~iwdl~~-~~~~~--~~~~~~~~----------V~~l~~sp~~~~l~sgs~-dg~I~iwD~ 227 (643)
++++++++|+++.. .|.|.++-+.. +.... .+..|... +....+.|++++|++.+. ..+|.+||+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999888865 58899998855 32211 12224433 788999999999888764 236999999
Q ss_pred CCCceeEEe---ccCCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCC-eEEEEeec---------CCCCeEEEEEecC
Q 006497 228 KSGRELCSF---HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAM-KELESFRG---------HRKDVTALAWHPF 293 (643)
Q Consensus 228 ~~~~~~~~~---~~~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~~-~~~~~~~~---------~~~~I~~l~~sp~ 293 (643)
..++....- ......-+.|.|+|++++.++.+ .+++|.+|+.... ..+.++.. ......+|.+++
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~- 253 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP- 253 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC-
Confidence 977543211 12445678999999999887665 5889999998763 22333221 234567888998
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCcceEEEe---cccCcceEEEEEcCCCCEEEEEECC-CeEEEEecCCCC
Q 006497 294 HEEYFVSGSL-DGSIFHWLVGHETPQVEIH---NVHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNRPG 359 (643)
Q Consensus 294 ~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~s~d~~~L~sgs~D-g~V~iWd~~~~~ 359 (643)
++++|.++.. ...|.+|.++.......+. ..+...-.++.|++++++|+++..| ..|.+|.++...
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 7888888764 3478888886654433332 2333446889999999999888764 579999987543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=127.31 Aligned_cols=281 Identities=14% Similarity=0.160 Sum_probs=194.5
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-------CceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCc
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-------FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 137 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~ 137 (643)
...+.+|...|+.++--.+.+-+++++.|.+|++|.++. ..+..+++.|+..|.++.|..+.+++++ .||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 356789999999999888888999999999999998653 2356778899999999999988777765 4788
Q ss_pred EEEEECCCCceEEee-----cCCCCCeEEEEEecCCCE-EEEEeCCCcEEEEECCCCeeeeEeec-----cCCCeEEEEE
Q 006497 138 IKYWQNNMNNVKANK-----SAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTG-----HGWDVKSVDW 206 (643)
Q Consensus 138 V~iwd~~~~~~~~~~-----~~~~~~I~~l~~s~d~~~-l~s~s~dg~I~iwdl~~~~~~~~~~~-----~~~~V~~l~~ 206 (643)
|.+||.-.+..+... .+....|.|+.-. +... ++.|+...+|+++|.+.++....++. ....++++++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 999997666544322 1222334444221 2333 44457789999999988876665553 3456899999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEE-EECCCCeEEEEeecCCCCe
Q 006497 207 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL-YDIRAMKELESFRGHRKDV 285 (643)
Q Consensus 207 sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i-wd~~~~~~~~~~~~~~~~I 285 (643)
.+.|++++++-.+|+|.+.|.++|+.+..+....-....++ .|....|+....|..+.| |...++......+......
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 99999999999999999999999999988765444444443 245567777778888888 8876665554444322222
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCc----ceEE-EecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 286 TALAWHPFHEEYFVSGSLDGSIFHWLVGHET----PQVE-IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 286 ~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~----~~~~-~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
..+. .-+.-|++......+.+|.-.... .+.+ ......+..++++.-|-+.-+..|.+.|.|.+
T Consensus 964 hflq---svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 964 HFLQ---SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhh---ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 2111 124456666666677777432111 1111 11223456788888887777888888888876
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.1e-12 Score=129.64 Aligned_cols=240 Identities=20% Similarity=0.307 Sum_probs=171.4
Q ss_pred EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCc
Q 006497 107 EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-------NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 179 (643)
Q Consensus 107 ~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~-------~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~ 179 (643)
+..+.+|...|+.++-..+.+-+++++.|++|++|.++. ..+..++..|+..|.++.|..+.++++++ |+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 345678999999988877888999999999999998653 23667778999999999999998888765 789
Q ss_pred EEEEECCCCeeeeEee-----ccCCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceeEEecc-----CCCcEEEEEE
Q 006497 180 VKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG-----HKNMVLCVKW 248 (643)
Q Consensus 180 I~iwdl~~~~~~~~~~-----~~~~~V~~l~~sp~~~~l-~sgs~dg~I~iwD~~~~~~~~~~~~-----~~~~i~~l~~ 248 (643)
|.+||--.++.+.... +....|.|+.-- +..++ +.++...+|+++|.+.++.+..++- .+..+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENV-DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccC-cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 9999976655544222 122334444321 33334 4447788999999999877666642 3456899999
Q ss_pred cCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEE-EECCCCcceEEEecccCc
Q 006497 249 NQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH-WLVGHETPQVEIHNVHDN 327 (643)
Q Consensus 249 sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~i-wd~~~~~~~~~~~~~h~~ 327 (643)
.+.|++++++-.+|+|.+.|.++++.+..++..+.....++-- .+..|+....|.++.+ |..-++......... ..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaap--sdq~L~~saldHslaVnWhaldgimh~q~kpp-pe 961 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAAP--SDQALAQSALDHSLAVNWHALDGIMHLQDKPP-PE 961 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcCc--hhHHHHhhcccceeEeeehhcCCeeeeccCCC-Cc
Confidence 9999999999999999999999999999888776666666532 4567777777888888 865443322222111 11
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 328 TVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 328 ~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
+..- .-.-|..|+++.+.+.+.+|.
T Consensus 962 pahf--lqsvgpSLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 962 PAHF--LQSVGPSLVTAQNGNILGVYA 986 (1034)
T ss_pred chhh--hhccCceeEEeccCcEEEEEe
Confidence 1111 111366788888888888885
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-09 Score=108.40 Aligned_cols=236 Identities=7% Similarity=0.032 Sum_probs=154.7
Q ss_pred EcCCCCEEEEEEC----------CCcEEEEeCCCCceEEEEccCC-------CCEEEEEEcCCCCEEEEEe-C-CCcEEE
Q 006497 80 WTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHD-------HAIRSMVWSHNDNWMVSGD-D-GGAIKY 140 (643)
Q Consensus 80 ~spdg~~L~tgs~----------dg~I~iwd~~~~~~~~~l~~h~-------~~V~~l~~s~~~~~L~sg~-~-dg~V~i 140 (643)
+++|++.|+++.. +..|.|||..+++.+..+..-. ..-..+++++||++|++.. . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999999887765 6889999999999998887422 2334789999999999776 3 689999
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee--E---eeccCCCeE-EEEEcC-CCCEE
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--S---LTGHGWDVK-SVDWHP-TKSLL 213 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~--~---~~~~~~~V~-~l~~sp-~~~~l 213 (643)
.|+.+++.+..+..-. ...-+..+.+.. + +-+.||......+++..... . +......+. .-.|.+ +++++
T Consensus 133 vD~~~~kvv~ei~vp~-~~~vy~t~e~~~-~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~ 209 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPD-CYHIFPTANDTF-F-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLV 209 (352)
T ss_pred EECCCCcEEEEEeCCC-CcEEEEecCCcc-E-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEE
Confidence 9999999988775422 222222222222 2 22345544444332211111 1 111000000 003344 77777
Q ss_pred EEEECCCcEEEEECCCC-----ceeEEecc-------CCCcEEEEEEcCCCCEEEEEE----------CCCcEEEEECCC
Q 006497 214 VSGGKDSLVKLWDAKSG-----RELCSFHG-------HKNMVLCVKWNQNGNWVLTAS----------KDQIIKLYDIRA 271 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~-----~~~~~~~~-------~~~~i~~l~~sp~g~~l~s~s----------~dg~I~iwd~~~ 271 (643)
++..+ |+|++.|+... +.+..+.. ....+.-+++++++++|++.. ..+.|.++|..+
T Consensus 210 ~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 210 WPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 77666 99999996543 22222211 122344599999999988853 224799999999
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCC-EEEEEe-CCCcEEEEECCCCcceEEE
Q 006497 272 MKELESFRGHRKDVTALAWHPFHEE-YFVSGS-LDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 272 ~~~~~~~~~~~~~I~~l~~sp~~~~-~l~sgs-~dg~I~iwd~~~~~~~~~~ 321 (643)
.+.+..+.. ...+..+++++ +++ +|++.+ .++.|.++|..+.+.+..+
T Consensus 289 ~kvi~~i~v-G~~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 289 GKRLRKIEL-GHEIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CeEEEEEeC-CCceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 999998874 56899999999 555 666555 6788999999887766665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=140.41 Aligned_cols=201 Identities=19% Similarity=0.301 Sum_probs=161.3
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 006497 111 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189 (643)
Q Consensus 111 ~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~ 189 (643)
+.+-..|.++.-++...+.++|+.||.|++|....+..+..+. .....|+.+.|+.+|+.+.++..||.|.+|.+. .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 3455678888888888999999999999999988776655542 334889999999999999999999999999987 45
Q ss_pred eeeEeeccCCCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEE
Q 006497 190 EERSLTGHGWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIK 265 (643)
Q Consensus 190 ~~~~~~~~~~~V~~l~~sp~~~~l~sgs---~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~ 265 (643)
.....+.|.....++.|-. ..+++++ +++.+.+||..-. ..-..-..|...++++++.|.-.+|++|+.+|.|+
T Consensus 2284 ~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2284 PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVC 2361 (2439)
T ss_pred ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEE
Confidence 6667778888888888874 6666664 5678999997532 21122277999999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEeccc
Q 006497 266 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH 325 (643)
Q Consensus 266 iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 325 (643)
|||++..+.++.+.. ++ ...+|++++..|.|+||++.....+..+...|
T Consensus 2362 l~D~rqrql~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ 2410 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA---------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEH 2410 (2439)
T ss_pred EeehHHHHHHHHhhh---------hh--hhheeeccCcccceEEEEccccchhhcCchhh
Confidence 999998877777764 33 47899999999999999998776555554444
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-11 Score=126.48 Aligned_cols=284 Identities=20% Similarity=0.362 Sum_probs=197.4
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC-CceEEEEccC-CCCEEEEEEcCCC--CEEEEEeCCCcEEEEECCC--
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAH-DHAIRSMVWSHND--NWMVSGDDGGAIKYWQNNM-- 145 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~-~~~~~~l~~h-~~~V~~l~~s~~~--~~L~sg~~dg~V~iwd~~~-- 145 (643)
.+.+.++.++|.|+-+|.++.-| +.+.|+.. +..-+.+..- .-.|-.+.|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 55788999999999999998877 44555543 3333333211 2246677887753 4555555566677898643
Q ss_pred -CceEEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCCe-eeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 146 -NNVKANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARCQ-EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 146 -~~~~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~~-~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
..+...+.+|...|+++.|.+.. ..+++++.|..+..||+++.. .+..+..-......++|+-....+++.+....|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 34556678999999999999865 568899999999999997754 344444455567789998766666666777889
Q ss_pred EEEECCCC-ceeEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEE-EeecCCCCeEEEEEecCCCCEEE
Q 006497 223 KLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 223 ~iwD~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~I~~l~~sp~~~~~l~ 299 (643)
++||++.+ ..+..+++|...|+.++|.. ....+.+++.|++|+.||..+..... ........|..-.+.|.++.+++
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 99999976 46778888888899999876 34568899999999999987543322 22234445666666665444333
Q ss_pred EEe----------CCCcEEEEECCCCcceEEEecccCcceEEEEEcCC----------CCEEEEEECCCeEEEEecC
Q 006497 300 SGS----------LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI----------GYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 300 sgs----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d----------~~~L~sgs~Dg~V~iWd~~ 356 (643)
--. .+.....|++.+....+..+.+|.+.|..+.|-.. .-.|+|-+.|..|++|.++
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 221 12233345554555566677889998888877542 2479999999999999875
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-09 Score=115.70 Aligned_cols=290 Identities=14% Similarity=0.181 Sum_probs=197.0
Q ss_pred EEeecCCCCCeEEEEEcCCC------------CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcC---CC-CE
Q 006497 65 HTSLNKNRCSINRVLWTPTG------------RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH---ND-NW 128 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg------------~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~---~~-~~ 128 (643)
...+..|...|+.|.|.+.. -+||++...|.|.|||......+..+..|.+.|..++|-+ +. ..
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~ 127 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDV 127 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhe
Confidence 35678899999999998731 2467778889999999999888889999999999999965 23 46
Q ss_pred EEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEec-CCCEEEEEeCCCcEEEE------------------------
Q 006497 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR-TDLKFCSCSDDTTVKVW------------------------ 183 (643)
Q Consensus 129 L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~-d~~~l~s~s~dg~I~iw------------------------ 183 (643)
|++-....+|.+|+..+++.............|+.+.| |.+.++..+..|.|.+.
T Consensus 128 LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl 207 (1062)
T KOG1912|consen 128 LLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDL 207 (1062)
T ss_pred eEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccch
Confidence 77777778999999998887766655555555666655 22334433334444333
Q ss_pred --------------------------------------------------ECCCCeeeeEeeccCCCeEEEEEcCCC--C
Q 006497 184 --------------------------------------------------DFARCQEERSLTGHGWDVKSVDWHPTK--S 211 (643)
Q Consensus 184 --------------------------------------------------dl~~~~~~~~~~~~~~~V~~l~~sp~~--~ 211 (643)
|++-..++..+....+.+.-+.|-|+. .
T Consensus 208 ~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd 287 (1062)
T KOG1912|consen 208 AHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRD 287 (1062)
T ss_pred hhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcc
Confidence 332222222222233344455666654 4
Q ss_pred EEEEEECCCcEEEEECCC----------------Ccee---EEec-----------------------------------
Q 006497 212 LLVSGGKDSLVKLWDAKS----------------GREL---CSFH----------------------------------- 237 (643)
Q Consensus 212 ~l~sgs~dg~I~iwD~~~----------------~~~~---~~~~----------------------------------- 237 (643)
.|++...||.+.||-.+. ++.+ +..+
T Consensus 288 ~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~r 367 (1062)
T KOG1912|consen 288 ALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGR 367 (1062)
T ss_pred eEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCC
Confidence 788999999999996543 1110 0000
Q ss_pred -------------------------------------cCCCcEEEEEEcC-----------CC-------CEEEEEECCC
Q 006497 238 -------------------------------------GHKNMVLCVKWNQ-----------NG-------NWVLTASKDQ 262 (643)
Q Consensus 238 -------------------------------------~~~~~i~~l~~sp-----------~g-------~~l~s~s~dg 262 (643)
+|....++....| .+ .++++|+..|
T Consensus 368 i~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sG 447 (1062)
T KOG1912|consen 368 IHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSG 447 (1062)
T ss_pred cCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCc
Confidence 0111112221111 11 2577899999
Q ss_pred cEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeC----------CCcEEEEECCCCcceEE--EecccCcceE
Q 006497 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL----------DGSIFHWLVGHETPQVE--IHNVHDNTVW 330 (643)
Q Consensus 263 ~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~--~~~~h~~~V~ 330 (643)
+|.++|+.++...+.+..|...|.++.|.. ...|++.+. -+.+.+-|++++..... +....+.+|+
T Consensus 448 TV~vvdvst~~v~~~fsvht~~VkgleW~g--~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~ 525 (1062)
T KOG1912|consen 448 TVDVVDVSTNAVAASFSVHTSLVKGLEWLG--NSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIR 525 (1062)
T ss_pred eEEEEEecchhhhhhhcccccceeeeeecc--ceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcce
Confidence 999999999999999999999999999974 444444332 23567778877654322 2444577899
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 331 DLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 331 ~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
.|..+..+++|+..-.|.-+.+||+.
T Consensus 526 ~irvS~~~~yLai~Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 526 AIRVSSSGRYLAILFRREPLEIWDLK 551 (1062)
T ss_pred eeeecccCceEEEEecccchHHHhhc
Confidence 99999999999999999999999984
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-09 Score=120.96 Aligned_cols=284 Identities=15% Similarity=0.203 Sum_probs=183.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCC---------------C--------CceEEEEcc---------------
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQ---------------S--------FNFEMILQA--------------- 112 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~---------------~--------~~~~~~l~~--------------- 112 (643)
-.+.|.|++||||+.+|+..+.+++|.+-+.. . |+....|.+
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 35689999999999999999999998876411 0 011111110
Q ss_pred ---------CCCCEEEEEEcCCCCEEEEEeC---C---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeC-
Q 006497 113 ---------HDHAIRSMVWSHNDNWMVSGDD---G---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD- 176 (643)
Q Consensus 113 ---------h~~~V~~l~~s~~~~~L~sg~~---d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~- 176 (643)
.+..-..|+|--||.++|+.+. + ..|+||+-+ +.+...-....+--.+++|.|.|++||+...
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~ 277 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRL 277 (928)
T ss_pred CccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEc
Confidence 2334457899999999998764 2 579999865 5555544444444567899999999998765
Q ss_pred --CCcEEEEECCCCeeeeEee----ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE--Eec-cCCCcEEEEE
Q 006497 177 --DTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFH-GHKNMVLCVK 247 (643)
Q Consensus 177 --dg~I~iwdl~~~~~~~~~~----~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~--~~~-~~~~~i~~l~ 247 (643)
...|.+|.- ++..-..+. .....|..|+|+.|+..||+...|. |.+|-..+..-.. .+. .....+..+.
T Consensus 278 ~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~ 355 (928)
T PF04762_consen 278 PDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVK 355 (928)
T ss_pred CCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceE
Confidence 345666663 232222222 3456799999999999999988665 9999988754222 222 1223355699
Q ss_pred EcC-CCCEEEEEECCCcEEEEECC----CC--------eEEEEee-----------------------cCCCCeEEEEEe
Q 006497 248 WNQ-NGNWVLTASKDQIIKLYDIR----AM--------KELESFR-----------------------GHRKDVTALAWH 291 (643)
Q Consensus 248 ~sp-~g~~l~s~s~dg~I~iwd~~----~~--------~~~~~~~-----------------------~~~~~I~~l~~s 291 (643)
|++ +...|.+.+.++.+..+++. .+ ..+..+. .....|.+++|+
T Consensus 356 Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~ 435 (928)
T PF04762_consen 356 WDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFS 435 (928)
T ss_pred ECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEe
Confidence 998 44567777766766655531 11 0111111 234678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCcce--------EEE---------ecccCcceEEEEEcCCCCEEEEEECC---CeEE
Q 006497 292 PFHEEYFVSGSLDGSIFHWLVGHETPQ--------VEI---------HNVHDNTVWDLAWHPIGYLLCSGSND---HTTK 351 (643)
Q Consensus 292 p~~~~~l~sgs~dg~I~iwd~~~~~~~--------~~~---------~~~h~~~V~~l~~s~d~~~L~sgs~D---g~V~ 351 (643)
+ +...+++-..||.|.+|+....... ..+ .......+..++|..+..+++....+ ..+.
T Consensus 436 ~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 514 (928)
T PF04762_consen 436 P-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIV 514 (928)
T ss_pred C-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEE
Confidence 8 5556888889999999985432211 011 01123457889998888777766654 6788
Q ss_pred EEecCCC
Q 006497 352 FWCRNRP 358 (643)
Q Consensus 352 iWd~~~~ 358 (643)
++++...
T Consensus 515 ~~~~~~~ 521 (928)
T PF04762_consen 515 LVDIDDS 521 (928)
T ss_pred EEEeccC
Confidence 8887443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-09 Score=103.09 Aligned_cols=232 Identities=10% Similarity=0.050 Sum_probs=156.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEee-cCCCCCeEEEE-EecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeE
Q 006497 125 NDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLS-FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK 202 (643)
Q Consensus 125 ~~~~L~sg~~dg~V~iwd~~~~~~~~~~-~~~~~~I~~l~-~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~ 202 (643)
+..+||.|+..|...+|...+++....+ ..+...|+-+. ++-....+..++.|.++++++++.......+....-.+.
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 4568999999999999998876644333 33333332221 111223477788899999998865544333322223488
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCC-c-eeE-EeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEe-
Q 006497 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSG-R-ELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF- 278 (643)
Q Consensus 203 ~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~-~~~-~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~- 278 (643)
++++++|++++++.++...|.+|.+... + .+. ......+.-.+..|+.....+|+++.||++.|||+|........
T Consensus 163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ 242 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI 242 (344)
T ss_pred eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence 9999999999999999999999988743 2 222 22334445678899999999999999999999999986553322
Q ss_pred ----ecCCCCeEEEEEecCCC-CEEEEEeCCCcEEEEECCCCcceEEEecc------cCc-ceEEEEEcCCCCEEEEEEC
Q 006497 279 ----RGHRKDVTALAWHPFHE-EYFVSGSLDGSIFHWLVGHETPQVEIHNV------HDN-TVWDLAWHPIGYLLCSGSN 346 (643)
Q Consensus 279 ----~~~~~~I~~l~~sp~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------h~~-~V~~l~~s~d~~~L~sgs~ 346 (643)
..|.+.+..+.|++.+. ++|+..-.-+.+.+.|+++......+... |.. .|....|+.++..+.+.++
T Consensus 243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 35788999999997332 34555545678999999887655443321 222 3777788877776666654
Q ss_pred CCeEEEEecCC
Q 006497 347 DHTTKFWCRNR 357 (643)
Q Consensus 347 Dg~V~iWd~~~ 357 (643)
+ .+.=|+++.
T Consensus 323 ~-~~ae~ni~s 332 (344)
T KOG4532|consen 323 L-QGAEYNILS 332 (344)
T ss_pred h-hhheeeccc
Confidence 4 344555543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.3e-10 Score=117.73 Aligned_cols=247 Identities=13% Similarity=0.221 Sum_probs=177.1
Q ss_pred cEEEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEE--ccCCCCEEEEEEcCCCCEEEEEeCCCcEE
Q 006497 62 KFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139 (643)
Q Consensus 62 ~~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l--~~h~~~V~~l~~s~~~~~L~sg~~dg~V~ 139 (643)
-.+..+|.||+..|..+.|+.+...|-+...+|.|.||-+-.+...... ....+-|.+++|+.||..|+....||.|.
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVI 140 (1189)
T ss_pred cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEE
Confidence 3467889999999999999999999999999999999987665533222 23456789999999999999999999998
Q ss_pred EEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-------eeeE----eeccCCCeEEEEEc-
Q 006497 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-------EERS----LTGHGWDVKSVDWH- 207 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~-------~~~~----~~~~~~~V~~l~~s- 207 (643)
|=.++.+++... .....-...+.|++|.+.++.+-.+|.+.++|....- +... +......|-.+.|.
T Consensus 141 VGsvdGNRIwgK-eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~ 219 (1189)
T KOG2041|consen 141 VGSVDGNRIWGK-ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNT 219 (1189)
T ss_pred EEeeccceecch-hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeecc
Confidence 887765543321 1222334578899999888888889999999974321 1111 11222346677775
Q ss_pred -------CCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCC---------cEEEEECCC
Q 006497 208 -------PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---------IIKLYDIRA 271 (643)
Q Consensus 208 -------p~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---------~I~iwd~~~ 271 (643)
||...|+++..+|.+.|-.-.+...-..+. ..-.|..+.|+++|..|++++.+. .|.+|. .-
T Consensus 220 g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~ 297 (1189)
T KOG2041|consen 220 GPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PY 297 (1189)
T ss_pred CccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCcccccCccccceEEEec-cc
Confidence 356689999999999887655443333333 236689999999999999988542 455554 34
Q ss_pred CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 272 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 272 ~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
++.+.+++.....|+.++|-. ..+-++-..|+.|++=+++
T Consensus 298 G~i~gtlkvpg~~It~lsWEg--~gLriA~AvdsfiyfanIR 337 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWEG--TGLRIAIAVDSFIYFANIR 337 (1189)
T ss_pred hhheEEEecCCceeeeeEEcC--CceEEEEEecceEEEEeec
Confidence 788889998999999999974 3333333446666655554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-09 Score=102.01 Aligned_cols=209 Identities=10% Similarity=0.033 Sum_probs=146.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCce-EEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEE
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 161 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~ 161 (643)
..+||.|+..|.+.+|...+.+. .+....|...|+-+.=..+ .-.+..++.|.++++.+++.+..........-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 35799999999999999886543 3344445554433221112 235677888999999988766544443322234889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCee--ee-EeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE---
Q 006497 162 LSFCRTDLKFCSCSDDTTVKVWDFARCQE--ER-SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--- 235 (643)
Q Consensus 162 l~~s~d~~~l~s~s~dg~I~iwdl~~~~~--~~-~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~--- 235 (643)
+++++|++++++.++...|..|.+....+ ++ .....++.-.+..|+.....+|++..||++.|||++.......
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 99999999999999999999999865432 22 1222344456889999999999999999999999997643322
Q ss_pred --eccCCCcEEEEEEcCCC--CEEEEEECCCcEEEEECCCCeEEEEeecCCC--------CeEEEEEec
Q 006497 236 --FHGHKNMVLCVKWNQNG--NWVLTASKDQIIKLYDIRAMKELESFRGHRK--------DVTALAWHP 292 (643)
Q Consensus 236 --~~~~~~~i~~l~~sp~g--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------~I~~l~~sp 292 (643)
-..|.+.+..+.|++.| .+|+..-.-+.+.|.|+|+++....+..... .|..-.|+.
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccC
Confidence 23588899999999754 3566666677899999999887665543222 266666665
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.3e-08 Score=95.95 Aligned_cols=265 Identities=9% Similarity=0.124 Sum_probs=173.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECC---CcEEEEeCCC--CceEEEE--ccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQS---GEFTLWNGQS--FNFEMIL--QAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYW 141 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~d---g~I~iwd~~~--~~~~~~l--~~h~~~V~~l~~s~~~~~L~sg~~-dg~V~iw 141 (643)
.+...++-|+|+++.++|.++..+ |.|..|.++. +++...- ......-+.+++++++++|+++.. .|.|.++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY 116 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence 345668889999999999988654 6677766553 4433221 112233377999999999998865 4889999
Q ss_pred ECCC-CceEEe--ecCCCCC----------eEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeeeEee---ccCCCeEEE
Q 006497 142 QNNM-NNVKAN--KSAHKES----------VRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLT---GHGWDVKSV 204 (643)
Q Consensus 142 d~~~-~~~~~~--~~~~~~~----------I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~~---~~~~~V~~l 204 (643)
-++. +.+... +..|.+. +....+.|++++|++++. .-.|.+|+++.+....... .....-+.|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi 196 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI 196 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence 8865 322211 1234333 788899999999988764 3479999998665432211 244567899
Q ss_pred EEcCCCCEEEEEEC-CCcEEEEECCCC-ceeEEec---------cCCCcEEEEEEcCCCCEEEEEEC-CCcEEEEECCC-
Q 006497 205 DWHPTKSLLVSGGK-DSLVKLWDAKSG-RELCSFH---------GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRA- 271 (643)
Q Consensus 205 ~~sp~~~~l~sgs~-dg~I~iwD~~~~-~~~~~~~---------~~~~~i~~l~~sp~g~~l~s~s~-dg~I~iwd~~~- 271 (643)
.|+|++++..+.++ +++|.+|+.+.. ..+..+. ....+...|.+++||++|+++.. ...|.+|.+..
T Consensus 197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~ 276 (346)
T COG2706 197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD 276 (346)
T ss_pred EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence 99999998776654 889999998863 2222222 12346788999999999998863 33678887753
Q ss_pred -CeE--EEEeecCCCCeEEEEEecCCCCEEEEEeCC-CcEEEEECCCCcceEEEec--ccCcceEEEEEc
Q 006497 272 -MKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETPQVEIHN--VHDNTVWDLAWH 335 (643)
Q Consensus 272 -~~~--~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s 335 (643)
++. +.....+...-+.+.+++ ++++|+++..+ ..|.+|.++...-.+.... .......|+.|.
T Consensus 277 ~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 277 GGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 322 222223334467889998 67777776654 5788998866544333322 223344555553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-08 Score=120.40 Aligned_cols=239 Identities=14% Similarity=0.152 Sum_probs=159.4
Q ss_pred EEEEEcCC-CCEEEEEECCCcEEEEeCCCCceEEEEcc-C-------------CCCEEEEEEcCCCCEEEEEeC-CCcEE
Q 006497 76 NRVLWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQA-H-------------DHAIRSMVWSHNDNWMVSGDD-GGAIK 139 (643)
Q Consensus 76 ~~i~~spd-g~~L~tgs~dg~I~iwd~~~~~~~~~l~~-h-------------~~~V~~l~~s~~~~~L~sg~~-dg~V~ 139 (643)
..++++.+ ++++++-+.++.|++||... +.+..+.. . -..-..|++.++++.|+++.. ++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788875 45555666778899999764 44433322 1 123477899888887766654 56799
Q ss_pred EEECCCCceEEeecC-C---------------CCCeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeeeEeecc-----
Q 006497 140 YWQNNMNNVKANKSA-H---------------KESVRDLSFCR-TDLKFCSCSDDTTVKVWDFARCQEERSLTGH----- 197 (643)
Q Consensus 140 iwd~~~~~~~~~~~~-~---------------~~~I~~l~~s~-d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~----- 197 (643)
++|+.++.+...... . -..-.++++++ ++..+++.+.++.|++||..++... .+.+.
T Consensus 650 ~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 999877654332110 0 11335789998 4555666677899999998776432 22111
Q ss_pred ----------CCCeEEEEEcCCCCEE-EEEECCCcEEEEECCCCceeEEecc-------------C--------CCcEEE
Q 006497 198 ----------GWDVKSVDWHPTKSLL-VSGGKDSLVKLWDAKSGRELCSFHG-------------H--------KNMVLC 245 (643)
Q Consensus 198 ----------~~~V~~l~~sp~~~~l-~sgs~dg~I~iwD~~~~~~~~~~~~-------------~--------~~~i~~ 245 (643)
-.....|+|+++++.| ++-+.++.|++||++++.......+ . -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1234579999998855 4555678999999987653211100 0 112468
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee-------------cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 246 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 246 l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-------------~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
++++++|+++++-..++.|++||..++....... ..-.....+++++ +++++++.+.+++|++||+
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEEC
Confidence 8999999988888889999999998776543321 1123567899998 6788999889999999999
Q ss_pred CCCcc
Q 006497 313 GHETP 317 (643)
Q Consensus 313 ~~~~~ 317 (643)
++...
T Consensus 888 ~~~~~ 892 (1057)
T PLN02919 888 NKGEA 892 (1057)
T ss_pred CCCcc
Confidence 77653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-09 Score=117.08 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=199.6
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCC------------CCEEEEEeCCCcEEEE
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN------------DNWMVSGDDGGAIKYW 141 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~------------~~~L~sg~~dg~V~iw 141 (643)
.-.++.|++.| +||.|+ ...|.|.|..+.+.+..+..|...|+.+.|.+. .-+||+++..|.|.+|
T Consensus 17 N~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred cccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEE
Confidence 36788999887 566665 457999999999999999999999999999872 1267788889999999
Q ss_pred ECCCCceEEeecCCCCCeEEEEEec---CC-CEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEE
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCR---TD-LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSG 216 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~---d~-~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sg 216 (643)
|......+..+..+.+.|.+++|.+ +. ..|++-....+|.+|+..+++...+.........|+.++| |.+.++.-
T Consensus 95 d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l 174 (1062)
T KOG1912|consen 95 DFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVL 174 (1062)
T ss_pred EehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEE
Confidence 9999998888999999999999976 23 3566667788999999999999888776666677899988 45566666
Q ss_pred ECCCcEEEEECCC-------CceeEEeccCCC------------c-------------EEEEEEcCCCCEEEEEECCCcE
Q 006497 217 GKDSLVKLWDAKS-------GRELCSFHGHKN------------M-------------VLCVKWNQNGNWVLTASKDQII 264 (643)
Q Consensus 217 s~dg~I~iwD~~~-------~~~~~~~~~~~~------------~-------------i~~l~~sp~g~~l~s~s~dg~I 264 (643)
+..|.|.+.+.-. ++..+.-..|.+ . ...++|+|.-+.++.......+
T Consensus 175 ~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prel 254 (1062)
T KOG1912|consen 175 GSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPREL 254 (1062)
T ss_pred ccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccce
Confidence 6677777665421 222222222111 0 1235667755555555667789
Q ss_pred EEEECCCCeEEEEeecCCCCeEEEEEecC-CCCEEEEEeCCCcEEEEECCCCcceEEEecc-----cCcc----------
Q 006497 265 KLYDIRAMKELESFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-----HDNT---------- 328 (643)
Q Consensus 265 ~iwd~~~~~~~~~~~~~~~~I~~l~~sp~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-----h~~~---------- 328 (643)
.|+|++-..++.......+.+.-+.|-|+ ..+.|++.-.||.+.+|-.+........... ....
T Consensus 255 lv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~ 334 (1062)
T KOG1912|consen 255 LVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF 334 (1062)
T ss_pred EEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhc
Confidence 99999988888888878888888888874 3557889999999999976543222221110 1112
Q ss_pred -eEEEEEcCC-CCEEEEEECCCeEEEEecCC
Q 006497 329 -VWDLAWHPI-GYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 329 -V~~l~~s~d-~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+......|. ...++..-.+|.+.+|.+..
T Consensus 335 rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~ 365 (1062)
T KOG1912|consen 335 RPVIGASCPSTPSALAVLYSSGDSTFWQLSN 365 (1062)
T ss_pred ccceeecCCCChhhhhhhhhcchhHHHhhhc
Confidence 222233343 33444445678899998863
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-09 Score=110.33 Aligned_cols=257 Identities=15% Similarity=0.045 Sum_probs=166.4
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEE-EEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCe---
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRS-MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV--- 159 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I--- 159 (643)
+..|++++.+|.++.+|.++++.+-..+... .+.+ ... .+..+++++.++.|..+|.++++.+.........+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4567888889999999999998877665432 2222 122 24567778889999999999999877664321111
Q ss_pred --EEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCC-------CeEEEEEcC--CCCEEEEEECCCcEEEEECC
Q 006497 160 --RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW-------DVKSVDWHP--TKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 160 --~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~-------~V~~l~~sp--~~~~l~sgs~dg~I~iwD~~ 228 (643)
..-.. .+..++.++.++.+..+|.++++.+........ ....+..+| .+..+++++.++.+..+|++
T Consensus 197 ~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 197 GESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred CCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11111 123567778899999999988876655431110 011111111 24567778889999999999
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCC-CCeEEEEEecCCCCEEEEEeCCCcE
Q 006497 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSGSLDGSI 307 (643)
Q Consensus 229 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~~l~sgs~dg~I 307 (643)
+++.+.+.... ....+.. ++..|++++.++.|..+|.++++.+....... ....+..+ .+..|+.++.||.|
T Consensus 275 tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l 347 (394)
T PRK11138 275 SGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYL 347 (394)
T ss_pred CCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEE
Confidence 99887665321 1122222 46678888899999999999998876543221 12233333 25667788999999
Q ss_pred EEEECCCCcceEEEecccCcceE-EEEEcCCCCEEEEEECCCeEEEEec
Q 006497 308 FHWLVGHETPQVEIHNVHDNTVW-DLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 308 ~iwd~~~~~~~~~~~~~h~~~V~-~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
+++|..+++.+.+.... ...+. ...+. +..|+.++.||.|+.+++
T Consensus 348 ~~ld~~tG~~~~~~~~~-~~~~~s~P~~~--~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 348 HWINREDGRFVAQQKVD-SSGFLSEPVVA--DDKLLIQARDGTVYAITR 393 (394)
T ss_pred EEEECCCCCEEEEEEcC-CCcceeCCEEE--CCEEEEEeCCceEEEEeC
Confidence 99999888766555432 22232 22232 457888999999998864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-08 Score=117.60 Aligned_cols=237 Identities=12% Similarity=0.102 Sum_probs=157.0
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCceEEeecC--C------------CCCeEEEEEecCCCEEEEEeC-CCcEEE
Q 006497 119 SMVWSHN-DNWMVSGDDGGAIKYWQNNMNNVKANKSA--H------------KESVRDLSFCRTDLKFCSCSD-DTTVKV 182 (643)
Q Consensus 119 ~l~~s~~-~~~L~sg~~dg~V~iwd~~~~~~~~~~~~--~------------~~~I~~l~~s~d~~~l~s~s~-dg~I~i 182 (643)
.++++.+ ++++++-..++.|++||.+.. .+..+.. . -.....|++.++++.|+++.. ++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5777764 556666677788999998654 3333221 1 123578899988887666554 578999
Q ss_pred EECCCCeeeeEeecc-----------------CCCeEEEEEcC-CCCEEEEEECCCcEEEEECCCCceeEEeccC-----
Q 006497 183 WDFARCQEERSLTGH-----------------GWDVKSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH----- 239 (643)
Q Consensus 183 wdl~~~~~~~~~~~~-----------------~~~V~~l~~sp-~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~----- 239 (643)
+|+.++. +.++.+. -..-..|+|++ ++.++++.+.++.|++||..++... .+.+.
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 9987753 3333211 11235799998 4556666677889999999876542 22111
Q ss_pred ----------CCcEEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEee-------------cC--------CCCeEE
Q 006497 240 ----------KNMVLCVKWNQNGNWVLTA-SKDQIIKLYDIRAMKELESFR-------------GH--------RKDVTA 287 (643)
Q Consensus 240 ----------~~~i~~l~~sp~g~~l~s~-s~dg~I~iwd~~~~~~~~~~~-------------~~--------~~~I~~ 287 (643)
-.....|+|++++++|+++ +.++.|++||++++....... .. ......
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 1234679999999865554 466899999998765321110 00 112357
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEec------------ccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------------VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 288 l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------------~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
+++++ +++++++-+.+++|++||.++.......-. ..-.....++++++|+++++-+.++.|++||+
T Consensus 809 vavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 809 VLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred eeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 88988 678888888999999999876543322111 11235678999999999998889999999999
Q ss_pred CCCC
Q 006497 356 NRPG 359 (643)
Q Consensus 356 ~~~~ 359 (643)
+...
T Consensus 888 ~~~~ 891 (1057)
T PLN02919 888 NKGE 891 (1057)
T ss_pred CCCc
Confidence 6643
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-09 Score=109.28 Aligned_cols=250 Identities=16% Similarity=0.266 Sum_probs=166.9
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC--CEEEE-----EeCCCcEEEEECCCCce
Q 006497 76 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--NWMVS-----GDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~--~~L~s-----g~~dg~V~iwd~~~~~~ 148 (643)
.+..|+.|.. |++--..+.|.+|+..+.+.+. -+-|...|+.+.+++.. ..||+ .+.-+.|+||.......
T Consensus 129 W~~qfs~dEs-l~arlv~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDES-LAARLVSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchh-hhhhhhcceEEEEecCCcccee-eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 5888888875 3333445689999988754332 23468889999999873 24443 24456799997653221
Q ss_pred EE---eecCCCCCeEEEEEecCCCEE-EE--EeC---------CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEE
Q 006497 149 KA---NKSAHKESVRDLSFCRTDLKF-CS--CSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 149 ~~---~~~~~~~~I~~l~~s~d~~~l-~s--~s~---------dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l 213 (643)
.. ...-....-..+.|+.-+.-| +. ..- +.++++++++..+....+. ..+.|.++.|+++++.+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF 285 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREF 285 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEE
Confidence 11 111122333456777666432 22 222 3478888887444444444 57799999999999866
Q ss_pred EE--EECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC---CCcEEEEECCCCeEEEEeecCCCCeEEE
Q 006497 214 VS--GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTAL 288 (643)
Q Consensus 214 ~s--gs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~I~~l 288 (643)
++ |..-.++.|||++ ++.+..+- .+.=+++-|+|.|++|+.++- -|.|.|||+.+.+++..+... ..+-+
T Consensus 286 ~VvyGfMPAkvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~--~tt~~ 360 (566)
T KOG2315|consen 286 AVVYGFMPAKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA--NTTVF 360 (566)
T ss_pred EEEEecccceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC--CceEE
Confidence 55 4556789999988 56666653 455688999999999998874 478999999998888887644 34668
Q ss_pred EEecCCCCEEEEEeC------CCcEEEEECCCCcceEEEecccCcceEEEEEcCC
Q 006497 289 AWHPFHEEYFVSGSL------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 289 ~~sp~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 337 (643)
.|+| ++.+|++++. |+.++||++.....-...+ ....+.++|-|-
T Consensus 361 eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f---~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 361 EWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMF---KSELLQVEWRPF 411 (566)
T ss_pred EEcC-CCcEEEEEeccccEEecCCeEEEEecCceeehhhh---hHhHhheeeeec
Confidence 9999 7888887764 6889999984432211111 115777888754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-08 Score=108.04 Aligned_cols=261 Identities=8% Similarity=0.003 Sum_probs=167.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCC----------CEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AIR-SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 152 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~----------~V~-~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~ 152 (643)
+..|++++.+|.|.-+|.++++.+-....... .+. .+.. +++.+++++.++.|..+|.++++.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 55788888889999999999887766543220 000 1111 3567788889999999999999887766
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCe-----EEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDV-----KSVDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 153 ~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V-----~~l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
...........+ .+..+++++.++.|..+|.++++.+..+......+ .+-.. .+..+++++.++.|..+|.
T Consensus 147 ~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 543322222222 23466777889999999999998887765321111 11111 1345777888999999999
Q ss_pred CCCceeEEeccCCC-------cEEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEE
Q 006497 228 KSGRELCSFHGHKN-------MVLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 228 ~~~~~~~~~~~~~~-------~i~~l~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l 298 (643)
++++.+.+...... ....+..+| .+..|++++.++.+..+|..+++.+.+.... ....+.. .+..|
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~~---~~~~v 297 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFAV---DGGRI 297 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcEE---ECCEE
Confidence 99987765431110 011111122 3567778888999999999999887665421 1222232 35667
Q ss_pred EEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+.++.+|.|..+|..+++.+............+..+. +..|+.++.||.|.+.|.+.
T Consensus 298 y~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld~~t 354 (394)
T PRK11138 298 YLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWINRED 354 (394)
T ss_pred EEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEECCC
Confidence 7778899999999988766554322111122222332 56788899999999999855
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.1e-08 Score=95.70 Aligned_cols=218 Identities=15% Similarity=0.137 Sum_probs=147.5
Q ss_pred EEEEcC-CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecC-
Q 006497 77 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA- 154 (643)
Q Consensus 77 ~i~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~- 154 (643)
+++|.+ ++.++++-...+.|+.|+..+++... +.... ...+++...+..|+++..++ +.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCCCcEEEEeecc
Confidence 578987 56666666678899999988876543 32222 67777773335666666655 55669888866544432
Q ss_pred ----CCCCeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEE-EEECCCc
Q 006497 155 ----HKESVRDLSFCRTDLKFCSCSDD--------TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV-SGGKDSL 221 (643)
Q Consensus 155 ----~~~~I~~l~~s~d~~~l~s~s~d--------g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~-sgs~dg~ 221 (643)
.....+++++.+++++.++.... +.|..++.. ++...... .-...+.|+|+++++.|+ +-+..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccce
Confidence 34568899999999977776543 557778876 44333333 345678999999999776 4556778
Q ss_pred EEEEECCCCce-------eEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEe-cC
Q 006497 222 VKLWDAKSGRE-------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWH-PF 293 (643)
Q Consensus 222 I~iwD~~~~~~-------~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s-p~ 293 (643)
|..||++.... +..+....+....+++..+|++.++....+.|.++|.+ ++.+..+......+++++|. ++
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTT
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCC
Confidence 99999863221 12223223347889999999988888889999999987 89888888776799999995 32
Q ss_pred CCCEEEEE
Q 006497 294 HEEYFVSG 301 (643)
Q Consensus 294 ~~~~l~sg 301 (643)
...+++|.
T Consensus 237 ~~~L~vTt 244 (246)
T PF08450_consen 237 GKTLYVTT 244 (246)
T ss_dssp SSEEEEEE
T ss_pred CCEEEEEe
Confidence 34455543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-08 Score=105.18 Aligned_cols=211 Identities=7% Similarity=-0.043 Sum_probs=132.2
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCC
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDDG---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDL 169 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~-L~sg~~d---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~ 169 (643)
..|.+-|.+..+ .+.+.... .+....|++|++. ++..+.+ ..|.++|+.+++...... ..+......|++|++
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 356665655443 33333333 7788999999984 5544433 458888998887655443 455667788999998
Q ss_pred EEEEEe-C--CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCceeEEeccCCCcE
Q 006497 170 KFCSCS-D--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMV 243 (643)
Q Consensus 170 ~l~s~s-~--dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d-g--~I~iwD~~~~~~~~~~~~~~~~i 243 (643)
.|+... . +..|+++|+.+++. ..+..+........|+|||+.|+..+.. + .|+++|+.+++..+.... ...
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 776543 2 35688889877653 3444343334466899999987776643 3 588889987765433321 111
Q ss_pred EEEEEcCCCCEEEEEECC---------CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe-CCCc--EEEEE
Q 006497 244 LCVKWNQNGNWVLTASKD---------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGS--IFHWL 311 (643)
Q Consensus 244 ~~l~~sp~g~~l~s~s~d---------g~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs-~dg~--I~iwd 311 (643)
...|+|||++|+..... ..|.+.|+.+++. ..+... .......|+| +++.|+..+ ..+. +.+.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC-CCCEEEEEEccCCcEEEEEEe
Confidence 24899999998877643 3688889887754 333322 2334688999 555554443 3333 44445
Q ss_pred CCC
Q 006497 312 VGH 314 (643)
Q Consensus 312 ~~~ 314 (643)
++.
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 533
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.8e-08 Score=97.66 Aligned_cols=219 Identities=11% Similarity=0.007 Sum_probs=144.2
Q ss_pred CCcEEEEeCCCCceEEEEccC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE
Q 006497 93 SGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 93 dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~ 170 (643)
+|.|..||..+++.+...... .....+..+ .++++|++++.++.|..||..+++.+..+.. ...+..... -++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecccc
Confidence 688999999999888777542 122222222 2567788889999999999999998877654 232222222 24456
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEe-eccC---CCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCc----
Q 006497 171 FCSCSDDTTVKVWDFARCQEERSL-TGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---- 242 (643)
Q Consensus 171 l~s~s~dg~I~iwdl~~~~~~~~~-~~~~---~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~---- 242 (643)
+++++.++.|+.+|.++++.+... .... .........-+++.++++..++.|..+|+++|+.+.........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 677778889999999999988874 3221 11122222223788888888999999999999998877653322
Q ss_pred ------EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 243 ------VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 243 ------i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
+..-.+..++ .+++++.++.+..+|+++++.+.+.. ...+..+. .. .+..|++++.++.|.+||+++++
T Consensus 159 ~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~~-~~-~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 159 ISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSLP-SV-DGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECECE-EC-CCTEEEEEETTTEEEEEETTTTE
T ss_pred eeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCCc-ee-eCCEEEEEeCCCEEEEEECCCCC
Confidence 1222222244 77777778864444999999775333 33333322 23 56777777799999999998887
Q ss_pred ceE
Q 006497 317 PQV 319 (643)
Q Consensus 317 ~~~ 319 (643)
...
T Consensus 234 ~~W 236 (238)
T PF13360_consen 234 VVW 236 (238)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-08 Score=105.65 Aligned_cols=191 Identities=10% Similarity=0.043 Sum_probs=128.2
Q ss_pred CeEEEEEcCCCCE-EEEEECC---CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEE-eCC--CcEEEEECCCC
Q 006497 74 SINRVLWTPTGRR-LITGSQS---GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG-DDG--GAIKYWQNNMN 146 (643)
Q Consensus 74 ~I~~i~~spdg~~-L~tgs~d---g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg-~~d--g~V~iwd~~~~ 146 (643)
.+..-+|++||+. ++..+.+ ..|+++|+.+++...... ..+.+....|++||+.|+.. +.+ ..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 6778999999985 6644433 468999998887655543 55667778999999877644 333 45777788777
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCC-C--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC----
Q 006497 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD---- 219 (643)
Q Consensus 147 ~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d-g--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d---- 219 (643)
+... +..+........|++|++.|+..++. + .|+++|+++++..+.... .. ....|+||++.|+.....
T Consensus 268 ~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~--~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 268 TLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK--NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred cEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--cCceECCCCCEEEEEEcCCCcc
Confidence 6544 33333334456899999988776642 2 688889887665443322 11 124899999988877654
Q ss_pred -----CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCC---cEEEEECCC
Q 006497 220 -----SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ---IIKLYDIRA 271 (643)
Q Consensus 220 -----g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg---~I~iwd~~~ 271 (643)
..|.+.|+++++. ..+... .......|+|||+.|+....++ .|.++++..
T Consensus 344 ~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3688889987754 344332 2334688999999887766432 356666653
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-09 Score=103.21 Aligned_cols=253 Identities=16% Similarity=0.199 Sum_probs=146.5
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCceE------------EEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE------------MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~------------~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
|+.+.++.+- .|+++..++.+..+...++.++ +.+..|.+.--+-+.+-.++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhhh-eeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 6666666443 4666666666555543332221 22222222222222223457899999999999998
Q ss_pred CCCCce-EEeecCCCCCeEEEEEecCCCEEEEEe-----CCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCC-CEEEE
Q 006497 143 NNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCS-----DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK-SLLVS 215 (643)
Q Consensus 143 ~~~~~~-~~~~~~~~~~I~~l~~s~d~~~l~s~s-----~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~-~~l~s 215 (643)
.+.... ...+......-.+.+++..++.|.++. .-+..++|+++..+.+...+.....|.+++-+|.. +++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 765211 111111111122233444444444321 12456677775544433333334458999988854 57788
Q ss_pred EECCCcEEEEECCCCce-eEEeccCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecC
Q 006497 216 GGKDSLVKLWDAKSGRE-LCSFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF 293 (643)
Q Consensus 216 gs~dg~I~iwD~~~~~~-~~~~~~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~ 293 (643)
|+.||.|.+||.++... ...++.|+..|+.+-|+| ++..|+++++||.+..||..+ +. +.+++
T Consensus 198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~-~~-------------l~i~~- 262 (319)
T KOG4714|consen 198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST-TF-------------LSISN- 262 (319)
T ss_pred ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC-ce-------------EEecC-
Confidence 89999999999997643 334678999999999999 678999999999999999765 11 11221
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-ceE---EEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 294 HEEYFVSGSLDGSIFHWLVGHET-PQV---EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 294 ~~~~l~sgs~dg~I~iwd~~~~~-~~~---~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
....+..|--.+.. ..+ .++......|+++... |..|++|++-+.|++++
T Consensus 263 ---------~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 263 ---------QASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--GPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ---------ccccccccccCCcccceEeeeccccccceeeeeeecc--CceEEeccccceEEEec
Confidence 11233344221111 111 1222223356665554 77899999888888875
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.9e-08 Score=99.50 Aligned_cols=231 Identities=13% Similarity=0.159 Sum_probs=160.4
Q ss_pred cEEEEeecCCCC--CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEcc---C---C--CCEEEEE----EcC-CC
Q 006497 62 KFVHTSLNKNRC--SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA---H---D--HAIRSMV----WSH-ND 126 (643)
Q Consensus 62 ~~~~~~l~~h~~--~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~---h---~--~~V~~l~----~s~-~~ 126 (643)
.+.-+.++.|++ .-.+=..+.||+.++.. ..|.|++||-++.++.+.--+ . + ..+.-.. |+. +|
T Consensus 254 dldGkDlrrHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~G 332 (668)
T COG4946 254 DLDGKDLRRHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNG 332 (668)
T ss_pred ccCCchhhhcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCC
Confidence 333344445543 22333345688877664 467899999877654433211 0 0 0111111 222 67
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeeeeEeeccCCCeEEEE
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVD 205 (643)
Q Consensus 127 ~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg-~I~iwdl~~~~~~~~~~~~~~~V~~l~ 205 (643)
++++..+. |...|.+...+-.+.. .+...|.-..+.-+.+.++.+..|| .|-|+|.++++.. .+...-+.|.++.
T Consensus 333 d~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~ 408 (668)
T COG4946 333 DYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVK 408 (668)
T ss_pred cEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEE
Confidence 88888876 6677777666655543 5667788888888888999999999 9999999887544 4444667899999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCC----cEEEEECCCCeEEEEeecC
Q 006497 206 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMKELESFRGH 281 (643)
Q Consensus 206 ~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~ 281 (643)
.+++|++++++.....|.++|+++++....-+...+-|+.++|++++++||-+--+| .|+++|+..++....-. .
T Consensus 409 vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ 487 (668)
T COG4946 409 VSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-P 487 (668)
T ss_pred EcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-C
Confidence 999999999999989999999999987666566678899999999999999887665 69999999877654322 2
Q ss_pred CCCeEEEEEecCCCCEEE
Q 006497 282 RKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 282 ~~~I~~l~~sp~~~~~l~ 299 (643)
...=.+-+|.+ ++++|.
T Consensus 488 ta~DfsPaFD~-d~ryLY 504 (668)
T COG4946 488 TAYDFSPAFDP-DGRYLY 504 (668)
T ss_pred cccccCcccCC-CCcEEE
Confidence 22334456666 455443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-09 Score=108.40 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=115.1
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCce----EEEEccCCCCEEEEEEcCCCCEEEEEeCCCc---EEEEECCCC
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGA---IKYWQNNMN 146 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~---V~iwd~~~~ 146 (643)
.+..+.+++++++||++..+....++++..... ..... -...-+++.|..+.....++..-|. +.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 455667788888899888887766666544322 22221 2233445555555555555554444 445554444
Q ss_pred ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe-eccCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225 (643)
Q Consensus 147 ~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~-~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iw 225 (643)
... .+-+|-..+.+++|++|++.|++++.|..|+|-.......+..+ -+|+..|..+++- ++..|++++.|++|++|
T Consensus 143 ~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 RCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW 220 (390)
T ss_pred Ccc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence 333 34589999999999999999999999999999887665555544 4699999999987 45669999999999999
Q ss_pred ECCCCceeEEec
Q 006497 226 DAKSGRELCSFH 237 (643)
Q Consensus 226 D~~~~~~~~~~~ 237 (643)
|+++++.+.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999887664
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.6e-11 Score=127.58 Aligned_cols=274 Identities=16% Similarity=0.247 Sum_probs=186.7
Q ss_pred EEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCC--cEEEEE
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQ 142 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg--~V~iwd 142 (643)
-+++..|+...+|++|+-+.+.|++|+..|.|++|++.+|........|...|+.+.=+.||..+++.+... ...+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 467788999999999999999999999999999999999999999999999999999999998877665443 478998
Q ss_pred CCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee----ccCCCeEEEEEcCCCCEEEEEE
Q 006497 143 NNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT----GHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 143 ~~~-~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~----~~~~~V~~l~~sp~~~~l~sgs 217 (643)
..+ +.....+ ..-.++.|+.....-+.++....+.|||+.++..+.++. +....-++..|+|+.++|+
T Consensus 1174 ~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--- 1246 (1516)
T ss_pred cccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---
Confidence 764 2222222 345677887665444555555778999999988776632 1223347889999988776
Q ss_pred CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCE
Q 006497 218 KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 297 (643)
Q Consensus 218 ~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~ 297 (643)
.|| .+||++..+.++.|...... ..-.|+|.|+.++.-+ .|||+|+.+.++.... -.-+.+.|+. .+++
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~--Ldqc~VtFNs-tG~V 1315 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS--LDQCAVTFNS-TGDV 1315 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCcc--ccceEEEecc-Cccc
Confidence 355 58999998888888655432 3346999999888765 4999999888765532 1234566665 3444
Q ss_pred EEEEeC--C---------------CcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC---------CeEE
Q 006497 298 FVSGSL--D---------------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND---------HTTK 351 (643)
Q Consensus 298 l~sgs~--d---------------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D---------g~V~ 351 (643)
+++.-. | ...+-+|..+-..+..+.. +..|.++|-++...+|+..-.. -..+
T Consensus 1316 mYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v--~R~~~Dlct~~~D~~l~vIe~~~~~d~dq~sT~~r 1393 (1516)
T KOG1832|consen 1316 MYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPV--DRCLLDLCTEPTDSFLGVIEMEDQEDMDQFSTSAR 1393 (1516)
T ss_pred hhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeec--ccchhhhhcCCccceEEEEeccChhhhhhhhhhhh
Confidence 332210 0 1122233322233333322 3456777777777777665432 2567
Q ss_pred EEecCCC
Q 006497 352 FWCRNRP 358 (643)
Q Consensus 352 iWd~~~~ 358 (643)
+|.+.+.
T Consensus 1394 ~yEIGR~ 1400 (1516)
T KOG1832|consen 1394 MYEIGRR 1400 (1516)
T ss_pred hhhhccc
Confidence 7766443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-09 Score=106.74 Aligned_cols=161 Identities=17% Similarity=0.224 Sum_probs=117.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce----EEeecCCCCCeEEEEEecCCCEEEEEeCCC---cEEEEECCCC
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV----KANKSAHKESVRDLSFCRTDLKFCSCSDDT---TVKVWDFARC 188 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~----~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg---~I~iwdl~~~ 188 (643)
.+..+..++++++||++..+....++++..... ... ......-+++.|..+...+..+..-| .+.+|....+
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~-~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDV-SCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeE-eecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344556677888999988888877777654432 222 12233445566666666655554444 4455554443
Q ss_pred eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe-ccCCCcEEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 267 (643)
Q Consensus 189 ~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 267 (643)
....+-+|-+-+++|+|++|+++|+++..|..|+|-....-..+..+ -+|+..|..++.-++ ..|++++.|++|++|
T Consensus 143 -~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 143 -RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLW 220 (390)
T ss_pred -CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEE
Confidence 33445578899999999999999999999999999887766666655 469999999998754 568999999999999
Q ss_pred ECCCCeEEEEee
Q 006497 268 DIRAMKELESFR 279 (643)
Q Consensus 268 d~~~~~~~~~~~ 279 (643)
|+++++.+.++.
T Consensus 221 d~~sgk~L~t~d 232 (390)
T KOG3914|consen 221 DITSGKLLDTCD 232 (390)
T ss_pred ecccCCcccccc
Confidence 999999987765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-09 Score=116.12 Aligned_cols=241 Identities=18% Similarity=0.291 Sum_probs=173.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceEEee-cCCCCCeEEEEEecCC--CEEEEEeCCCcEEEEECCC--
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMN-NVKANK-SAHKESVRDLSFCRTD--LKFCSCSDDTTVKVWDFAR-- 187 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~-~~~~~~-~~~~~~I~~l~~s~d~--~~l~s~s~dg~I~iwdl~~-- 187 (643)
.+.+.++..++.|+-+|.++.-| +.+.|+... ..-..+ ....-.|-++.|++.. .+-++......-.||++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 56778889999999999988877 555565542 211111 1223346677787654 3444445556677898843
Q ss_pred -CeeeeEeeccCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcE
Q 006497 188 -CQEERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQII 264 (643)
Q Consensus 188 -~~~~~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I 264 (643)
......+.+|...|+.+.|++.. ..+++++.|-.+..||+++-. .+..+.........|+|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 23345567889999999999865 478999999999999999754 556666566677889999855556666677889
Q ss_pred EEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCE--E
Q 006497 265 KLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL--L 341 (643)
Q Consensus 265 ~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~--L 341 (643)
++||++.+. .+..+++|...|+.++|.......+.+++.|++|++||.++.....+.....+..|+.-++.|-|+- +
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999998764 5788888999999999987677789999999999999998877666655556778888888885533 3
Q ss_pred EEEECCCeEEEEec
Q 006497 342 CSGSNDHTTKFWCR 355 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~ 355 (643)
.---.+..|.+++.
T Consensus 263 mp~~G~n~v~~~~c 276 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRC 276 (1081)
T ss_pred ccccCCeeeeeccc
Confidence 22222335555554
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.6e-09 Score=104.34 Aligned_cols=278 Identities=16% Similarity=0.151 Sum_probs=187.7
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCC---CceEEEEccCCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQS---FNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQNNM 145 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~-dg~V~iwd~~~ 145 (643)
-|++.|+.+..+. .+++++++.||.++.|.-.. -+.++.+..|...|.+++.+.++.++.+.+. |..++++|+++
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 3778888887664 56899999999999997433 3455667788889999999999999999777 99999999887
Q ss_pred CceEEeec--CCCCCeEEEEEecCC-C-EEE-EEeCCCcEEEEECCCC--eeeeEeeccCCCeEEEEEcCCCCEEEEEEC
Q 006497 146 NNVKANKS--AHKESVRDLSFCRTD-L-KFC-SCSDDTTVKVWDFARC--QEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 146 ~~~~~~~~--~~~~~I~~l~~s~d~-~-~l~-s~s~dg~I~iwdl~~~--~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
-....-++ ...+.+.+ ..++.. . .|+ +...++.|.|+|-... +....-..|..+|.++.+++.+..+++...
T Consensus 86 ~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred cchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 66543332 11222222 222221 1 233 3345789999997443 333444568899999999999999999999
Q ss_pred CCcEEEEECCC------CceeE---------EeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec---
Q 006497 219 DSLVKLWDAKS------GRELC---------SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG--- 280 (643)
Q Consensus 219 dg~I~iwD~~~------~~~~~---------~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~--- 280 (643)
.|.|..|..+. .+... .+...+....++.|++++..+.+-+.|..|++++.++++.++.+..
T Consensus 165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 99999998872 11111 1223456688999999999999999999999999999887665421
Q ss_pred -----------------------------CC-CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc------
Q 006497 281 -----------------------------HR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV------ 324 (643)
Q Consensus 281 -----------------------------~~-~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------ 324 (643)
+. ..-+.+.|.. .+++|+.++-= -|++.++.+......+-..
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde-s~~flly~t~~-gikvin~~tn~v~ri~gk~e~ir~~ 322 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE-SGNFLLYGTIL-GIKVINLDTNTVVRILGKDEAIRFT 322 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC-CCCEEEeecce-eEEEEEeecCeEEEEeccchhhhhh
Confidence 11 1224556665 67777777654 3566666554322111100
Q ss_pred --------------------cCcceEEEEEcCCCCEEEEEECCCeEEEE
Q 006497 325 --------------------HDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 325 --------------------h~~~V~~l~~s~d~~~L~sgs~Dg~V~iW 353 (643)
..+++ +.+.+|-.+++++-....+++|
T Consensus 323 ~~sl~q~~~k~~~~~~~~~a~~np~--~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 323 RLSLYQGAQKSNLAALEVAASNNPL--LEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hHHHHhhhhhccchhhhhhhccCcc--cccCCCCeEEEeeeecceEEEE
Confidence 01111 2255566777888888888888
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-07 Score=93.63 Aligned_cols=214 Identities=12% Similarity=-0.014 Sum_probs=141.1
Q ss_pred CCCcEEEEECCCCceEEeecCCC--CCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCC
Q 006497 134 DGGAIKYWQNNMNNVKANKSAHK--ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 211 (643)
Q Consensus 134 ~dg~V~iwd~~~~~~~~~~~~~~--~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~ 211 (643)
.+|.|..||..+++.+....... ....+. ...++.++++++.++.|+.||..+++.+..+... ..+..... .++.
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~-~~~~ 77 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP-GPISGAPV-VDGG 77 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-SCGGSGEE-EETT
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-ccccceee-eccc
Confidence 36889999998888877764311 222221 2335667888889999999999999988877752 22221111 1356
Q ss_pred EEEEEECCCcEEEEECCCCceeEEe-ccCC---CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCe--
Q 006497 212 LLVSGGKDSLVKLWDAKSGRELCSF-HGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV-- 285 (643)
Q Consensus 212 ~l~sgs~dg~I~iwD~~~~~~~~~~-~~~~---~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I-- 285 (643)
.+++++.|+.|+.+|.++++.+.+. .... .........-+++.++++..++.|..+|+++++.+..+.......
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 6777778899999999999998884 3221 111222222237888999989999999999999998887644221
Q ss_pred ---------EEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 286 ---------TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 286 ---------~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
..+.+. ++ .++.++.++.+..+|+.+++...... ...+..+ ...++..|+.++.|+.|.+||+.
T Consensus 158 ~~~~~~~~~~~~~~~--~~-~v~~~~~~g~~~~~d~~tg~~~w~~~---~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 158 PISSFSDINGSPVIS--DG-RVYVSSGDGRVVAVDLATGEKLWSKP---ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK 230 (238)
T ss_dssp -EEEETTEEEEEECC--TT-EEEEECCTSSEEEEETTTTEEEEEEC---SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred ceeeecccccceEEE--CC-EEEEEcCCCeEEEEECCCCCEEEEec---CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence 222222 33 77777778765445998887554322 2223332 34567788888899999999995
Q ss_pred C
Q 006497 357 R 357 (643)
Q Consensus 357 ~ 357 (643)
.
T Consensus 231 t 231 (238)
T PF13360_consen 231 T 231 (238)
T ss_dssp T
T ss_pred C
Confidence 4
|
... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-07 Score=87.34 Aligned_cols=110 Identities=14% Similarity=-0.040 Sum_probs=78.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEE
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 163 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 163 (643)
..+++.|+..+.+.-.|..+++...+.. -...|.+-+.- -|++++.|+..|.+++.+.++++....+...+.--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 3567788888888888888887654432 23444443332 367899999999999999999977666543322222233
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeeeEee
Q 006497 164 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 195 (643)
Q Consensus 164 ~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~ 195 (643)
...++..|..++.|++.+..|.++...+.+.+
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 45688899999999999999998887776655
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.4e-07 Score=89.55 Aligned_cols=219 Identities=16% Similarity=0.107 Sum_probs=143.0
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec
Q 006497 118 RSMVWSH-NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 196 (643)
Q Consensus 118 ~~l~~s~-~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~ 196 (643)
.+++|.+ ++.++++-...+.|..|+..+++....... . ...+++...+..|+.+..+ .+.++|+.+++.......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~-~--~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLP-G--PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESS-S--EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecC-C--CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 3678887 566666666789999999988766543222 2 7777787333556666654 456669988765544443
Q ss_pred -----cCCCeEEEEEcCCCCEEEEEECC--------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEE-EECCC
Q 006497 197 -----HGWDVKSVDWHPTKSLLVSGGKD--------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT-ASKDQ 262 (643)
Q Consensus 197 -----~~~~V~~l~~sp~~~~l~sgs~d--------g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s-~s~dg 262 (643)
.....++++++++|++.++.... |.|..++.. ++...... .-...+.|+|+++++.|++ -+..+
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~ 156 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNG 156 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTT
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccc
Confidence 23467899999999977766543 557778877 44333333 3456789999999997764 45677
Q ss_pred cEEEEECCC-Ce------EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEc
Q 006497 263 IIKLYDIRA-MK------ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 335 (643)
Q Consensus 263 ~I~iwd~~~-~~------~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 335 (643)
.|..||+.. +. .+..+.......-.+++.. +++++++....+.|.++|.+ ++.+..+... ...+++++|.
T Consensus 157 ~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fg 233 (246)
T PF08450_consen 157 RIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFG 233 (246)
T ss_dssp EEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEE
T ss_pred eeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEE
Confidence 899999853 21 1222222223477899998 78888888889999999986 5544444433 4589999994
Q ss_pred -CCCCEEEEEE
Q 006497 336 -PIGYLLCSGS 345 (643)
Q Consensus 336 -~d~~~L~sgs 345 (643)
++.+.|+..+
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 5655555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-08 Score=110.83 Aligned_cols=183 Identities=18% Similarity=0.238 Sum_probs=145.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEE
Q 006497 167 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246 (643)
Q Consensus 167 d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l 246 (643)
+...++.|+....+..+|+++.++.+........|.-+.. +++++.+|...|+|.+-|.++.+.++++..|.+.|..+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 4456777888888999999988877776655555666654 57899999999999999999999999999999999876
Q ss_pred EEcCCCCEEEEEEC---------CCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE---CCC
Q 006497 247 KWNQNGNWVLTASK---------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL---VGH 314 (643)
Q Consensus 247 ~~sp~g~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd---~~~ 314 (643)
.. .|+.|++|+. |..|+|||+|..+.+.-+.-+.+. .-+.|+|.-...+++++..|...+-| +.+
T Consensus 224 Dv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 224 DV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred ec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCC
Confidence 65 5889998873 667999999998887766644443 56778887778889999999999998 433
Q ss_pred CcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 315 ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 315 ~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
...-..........|..++++++++.|+.+..+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 3333333333355699999999999999999999999997
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.01 E-value=9.6e-07 Score=88.21 Aligned_cols=227 Identities=11% Similarity=0.110 Sum_probs=158.1
Q ss_pred eEEEEEcC-CCCEEEEEECCCc-EEEEeCCCCceEEEEccCCCCEE--EEEEcCCCCEEEEEeC-----CCcEEEEECC-
Q 006497 75 INRVLWTP-TGRRLITGSQSGE-FTLWNGQSFNFEMILQAHDHAIR--SMVWSHNDNWMVSGDD-----GGAIKYWQNN- 144 (643)
Q Consensus 75 I~~i~~sp-dg~~L~tgs~dg~-I~iwd~~~~~~~~~l~~h~~~V~--~l~~s~~~~~L~sg~~-----dg~V~iwd~~- 144 (643)
...++.+| +...++.+-.-|+ ..+||..+++....+....+.-. .-+|++||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34678888 4566777777664 78899999998888766544432 4689999999998754 4889999998
Q ss_pred CCceEEeecCCCCCeEEEEEecCCCEEEEEeC------------------CCcEEEEECCCCeeeeEee----ccCCCeE
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSD------------------DTTVKVWDFARCQEERSLT----GHGWDVK 202 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~------------------dg~I~iwdl~~~~~~~~~~----~~~~~V~ 202 (643)
+.+.+.++..+.-.-..+.+.+|++.|+++.. +-+|.+.|..+++.+.... .|...|+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiR 166 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIR 166 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccccccee
Confidence 66777778878777888999999988877631 2245566777777666533 3667899
Q ss_pred EEEEcCCCCEEEEEECCCc-------EEEEECCCCceeEEe-------ccCCCcEEEEEEcCCCCEEEEEE-CCCcEEEE
Q 006497 203 SVDWHPTKSLLVSGGKDSL-------VKLWDAKSGRELCSF-------HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLY 267 (643)
Q Consensus 203 ~l~~sp~~~~l~sgs~dg~-------I~iwD~~~~~~~~~~-------~~~~~~i~~l~~sp~g~~l~s~s-~dg~I~iw 267 (643)
.|++..+|..++..-..|. |.+++... .+..+ ....+.|-+|+++.++.++++.+ ..+.+.+|
T Consensus 167 HLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred eEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9999998876655543332 44444332 22222 23456799999999998876555 77899999
Q ss_pred ECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 006497 268 DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 308 (643)
Q Consensus 268 d~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~ 308 (643)
|..+++.+.... ...+..++... +.++++.+ .|.+.
T Consensus 245 d~~tg~~~~~~~--l~D~cGva~~~--~~f~~ssG-~G~~~ 280 (305)
T PF07433_consen 245 DAATGRLLGSVP--LPDACGVAPTD--DGFLVSSG-QGQLI 280 (305)
T ss_pred ECCCCCEeeccc--cCceeeeeecC--CceEEeCC-CccEE
Confidence 999999887654 34456666654 33555444 45543
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.2e-07 Score=87.45 Aligned_cols=243 Identities=12% Similarity=0.080 Sum_probs=138.3
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCC--ceEEee---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe
Q 006497 120 MVWSHNDNWMVSGDDGGAIKYWQNNMN--NVKANK---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 194 (643)
Q Consensus 120 l~~s~~~~~L~sg~~dg~V~iwd~~~~--~~~~~~---~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~ 194 (643)
++.+.||++||+. .|..|.|-..++. .++.+. +...-.-+.++|++|+..||.+...|+|++||+...+ +..+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 4566777766654 4566666543322 122222 2333456789999999999999999999999997643 3333
Q ss_pred ec-------cCCCeEEEEEcCCC------CEEEEEECCCcEEEEECCC-----CceeEEec---cCCCcEEEEEEcCCCC
Q 006497 195 TG-------HGWDVKSVDWHPTK------SLLVSGGKDSLVKLWDAKS-----GRELCSFH---GHKNMVLCVKWNQNGN 253 (643)
Q Consensus 195 ~~-------~~~~V~~l~~sp~~------~~l~sgs~dg~I~iwD~~~-----~~~~~~~~---~~~~~i~~l~~sp~g~ 253 (643)
.. ....|..+.|.... ..|++-..+|.++-|-+.. .+...++. .....|.++.|++..+
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 21 23456677675422 2566667788887776532 22333332 2456899999999988
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEE-EEEeCCC------cEEEEECCCCcceEEEecccC
Q 006497 254 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF-VSGSLDG------SIFHWLVGHETPQVEIHNVHD 326 (643)
Q Consensus 254 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l-~sgs~dg------~I~iwd~~~~~~~~~~~~~h~ 326 (643)
+|++|+.... +++. -+.....+++-.+..+...+. ++...|+ +..+|.+-+. ..........
T Consensus 161 LLlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~-~~fs~~~~~~ 229 (282)
T PF15492_consen 161 LLLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF-KFFSRQGQEQ 229 (282)
T ss_pred EEEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce-eeeeccccCC
Confidence 8888774322 0000 001111222222221111111 1111111 1123332211 1111222346
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccccccccCCCccccce
Q 006497 327 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQ 377 (643)
Q Consensus 327 ~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~~~~~~ 377 (643)
..|..|..|||+.+||+...+|.|.+|++-. -....++...+..+|++-
T Consensus 230 d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs--L~~~~~W~~~eqPg~~e~ 278 (282)
T PF15492_consen 230 DGIFKMSLSPDGSLLACIHFSGSLSLWEIPS--LRLQRSWKQDEQPGYNEI 278 (282)
T ss_pred CceEEEEECCCCCEEEEEEcCCeEEEEecCc--chhhcccchhhCCCCccC
Confidence 7899999999999999999999999999843 344445555555565543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.1e-09 Score=100.56 Aligned_cols=149 Identities=19% Similarity=0.285 Sum_probs=106.9
Q ss_pred CCCEEEEEECCCcEEEEECCCCceeE-EeccCCCcEEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCeEEEEeecCC
Q 006497 209 TKSLLVSGGKDSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELESFRGHR 282 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~~~~~~-~~~~~~~~i~~l~~sp~g~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~~ 282 (643)
.++.++++..||.+.+++.+.-..+. ++.......-+.++...+++|.++. .-+..++|+++-.+.+..-+...
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~ 179 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKAL 179 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccccc
Confidence 46779999999999999987521111 1111111112223333444444332 22356677776655544434444
Q ss_pred CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCC-CCEEEEEECCCeEEEEecCC
Q 006497 283 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI-GYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 283 ~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d-~~~L~sgs~Dg~V~iWd~~~ 357 (643)
..|++++-+|....++++|+.||.+.+||.++......++..|+..|+.+-|++. ...|+++++||.+.-||.+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5599999999888899999999999999999998888899999999999999995 68899999999999999763
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-07 Score=103.59 Aligned_cols=276 Identities=13% Similarity=0.207 Sum_probs=164.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
-.+.|.++.|..+.+.|+.+..+|.|.+-|.++.... ....-+..|.+++|++|++.++..+.+.+|.+-+. +...+.
T Consensus 67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~ 144 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIA 144 (1265)
T ss_pred CCcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchh
Confidence 3468999999999999999999999999998876533 33345788999999999999999998888776542 222221
Q ss_pred eec-----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE-----CCC
Q 006497 151 NKS-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-----KDS 220 (643)
Q Consensus 151 ~~~-----~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs-----~dg 220 (643)
... ...+....+-|-.....|= | ..|.....+....+.........+.=+.|+|--||.++++.. ...
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqfr-g-s~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~R 222 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQFR-G-SEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTR 222 (1265)
T ss_pred ccccccccccccccceecccccceeee-c-chhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCce
Confidence 111 1112222333332221111 1 112222211111111001001122235799999999998842 237
Q ss_pred cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeEEE----EeecCCCCeEEEEEecC
Q 006497 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKELE----SFRGHRKDVTALAWHPF 293 (643)
Q Consensus 221 ~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s---~dg~I~iwd~~~~~~~~----~~~~~~~~I~~l~~sp~ 293 (643)
.|+|||.+ +..-..-......-.+++|-|.|.++++-. .|+.|.+|.- +|-.-. .+......|..++|+.
T Consensus 223 kirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns- 299 (1265)
T KOG1920|consen 223 KIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS- 299 (1265)
T ss_pred eEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC-
Confidence 89999977 443333233344457899999999988754 4567888874 343332 2333445599999998
Q ss_pred CCCEEEE---EeCCCcEEEEECCCCcceEE-EecccCcceEEEEEcCCC-CEEEEEECCCeEEEEec
Q 006497 294 HEEYFVS---GSLDGSIFHWLVGHETPQVE-IHNVHDNTVWDLAWHPIG-YLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 294 ~~~~l~s---gs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~d~-~~L~sgs~Dg~V~iWd~ 355 (643)
++.+|++ ......|++|-+.+-.--.+ ......... +.|++.. ..|..-..+|.+.++++
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred CCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 7888877 44444599998865432211 111111122 7788742 34444446777666655
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-06 Score=85.16 Aligned_cols=227 Identities=12% Similarity=0.067 Sum_probs=156.5
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCc-EEEEECCCCceEEeecCCCCCeE--EEEEecCCCEEEEEeC-----CCcEEEEECC
Q 006497 116 AIRSMVWSH-NDNWMVSGDDGGA-IKYWQNNMNNVKANKSAHKESVR--DLSFCRTDLKFCSCSD-----DTTVKVWDFA 186 (643)
Q Consensus 116 ~V~~l~~s~-~~~~L~sg~~dg~-V~iwd~~~~~~~~~~~~~~~~I~--~l~~s~d~~~l~s~s~-----dg~I~iwdl~ 186 (643)
....++.++ +...++.+-.-|+ ..+||..+++....+....+.-. .-.|++|+++|++.-+ .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 345677888 4566677777665 67899999988877754444332 3579999999998754 4789999998
Q ss_pred -CCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC------------------CCcEEEEECCCCceeEEec----cCCCcE
Q 006497 187 -RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMV 243 (643)
Q Consensus 187 -~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~------------------dg~I~iwD~~~~~~~~~~~----~~~~~i 243 (643)
+.+.+.++..+.-.-..|.+.+|++.|+++.. +-.|.+.|.++++.+.+.. .|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 67777888877777778999999988887631 2346677888888877643 377789
Q ss_pred EEEEEcCCCCEEEEEECCC-------cEEEEECCCCeEEEEee-------cCCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 006497 244 LCVKWNQNGNWVLTASKDQ-------IIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 244 ~~l~~sp~g~~l~s~s~dg-------~I~iwd~~~~~~~~~~~-------~~~~~I~~l~~sp~~~~~l~sgs~dg~I~i 309 (643)
..+++..+|..++..-..+ .|.+++.. +.+..+. .....|-+|+++.++..+.+|+-..+.+.+
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~ 243 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAV 243 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEE
Confidence 9999999987666554433 24444433 3233332 344678999999833344566667789999
Q ss_pred EECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCe
Q 006497 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 349 (643)
Q Consensus 310 wd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~ 349 (643)
||..+...+.... -..+..++...++ ++++.+ .|.
T Consensus 244 ~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 244 WDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred EECCCCCEeeccc---cCceeeeeecCCc-eEEeCC-Ccc
Confidence 9998776544433 3357777777666 555544 454
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-06 Score=83.72 Aligned_cols=228 Identities=14% Similarity=0.188 Sum_probs=134.1
Q ss_pred EEEcCCCCEEEEEECCCcEEEEeCCCC--ceEEEEcc---CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee
Q 006497 78 VLWTPTGRRLITGSQSGEFTLWNGQSF--NFEMILQA---HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 152 (643)
Q Consensus 78 i~~spdg~~L~tgs~dg~I~iwd~~~~--~~~~~l~~---h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~ 152 (643)
++.+.||++||+.- |..|.|-..++. ..+...+. -.-.-+.++|++|+.+||.+...|+|+++|+...++...-
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 56788898777654 667777654431 12222222 2234567999999999999999999999998764433221
Q ss_pred c------CCCCCeEEEEEecCC------CEEEEEeCCCcEEEEECC-----CCeeeeEeec---cCCCeEEEEEcCCCCE
Q 006497 153 S------AHKESVRDLSFCRTD------LKFCSCSDDTTVKVWDFA-----RCQEERSLTG---HGWDVKSVDWHPTKSL 212 (643)
Q Consensus 153 ~------~~~~~I~~l~~s~d~------~~l~s~s~dg~I~iwdl~-----~~~~~~~~~~---~~~~V~~l~~sp~~~~ 212 (643)
. .....|..+.|.... ..|++...+|.++-|-+. ..++...+.. +...|.++.+++..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 1 223566777776432 246666778888777652 2223333332 3568999999999998
Q ss_pred EEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCC-E-EEEEECCC------cEEEEECCCCeEEEEeecCCCC
Q 006497 213 LVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN-W-VLTASKDQ------IIKLYDIRAMKELESFRGHRKD 284 (643)
Q Consensus 213 l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~-~-l~s~s~dg------~I~iwd~~~~~~~~~~~~~~~~ 284 (643)
|++|+.... +++. .+.....+++-.+-.+.- + .++...|+ +..+|.+-+.+...........
T Consensus 162 LlVgG~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 162 LLVGGCEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEeccCCC------CCcc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 888765332 0000 001111122222211111 1 11111111 1233333333332222345678
Q ss_pred eEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc
Q 006497 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317 (643)
Q Consensus 285 I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~ 317 (643)
|..+..|| ++.+||+...+|.|.+|++-.-..
T Consensus 232 i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 232 IFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred eEEEEECC-CCCEEEEEEcCCeEEEEecCcchh
Confidence 99999999 899999999999999999965443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-08 Score=96.19 Aligned_cols=237 Identities=16% Similarity=0.281 Sum_probs=149.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eEEeecCC------------CCCeEEEEEecCC--CEEEE
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-----VKANKSAH------------KESVRDLSFCRTD--LKFCS 173 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~-----~~~~~~~~------------~~~I~~l~~s~d~--~~l~s 173 (643)
....|+++.|...|.||++|...|.|.+|.-+... ....+..| ...|..+.|..++ ..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 35679999999999999999999999999654322 11122333 3467888998765 44777
Q ss_pred EeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEE--------EE-CCCcEEEEECCCCceeEEe-ccCCCcE
Q 006497 174 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS--------GG-KDSLVKLWDAKSGRELCSF-HGHKNMV 243 (643)
Q Consensus 174 ~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~s--------gs-~dg~I~iwD~~~~~~~~~~-~~~~~~i 243 (643)
.+.|.+|++|.+........... ..+.-.-++-+.-+.+ .+ .|..|... ..+.. ..|.--|
T Consensus 105 stNdktiKlWKiyeknlk~va~n---nls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~------p~rvyaNaH~yhi 175 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAEN---NLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK------PCRVYANAHPYHI 175 (460)
T ss_pred ecCCceeeeeeeecccchhhhcc---ccccccccccCCCcCCHHHhhcccccccceEEEec------cceeccccceeEe
Confidence 88999999999865432211110 0000000111100000 00 01111111 11111 3466779
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeE---EEEeecCC-----CCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 006497 244 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---LESFRGHR-----KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 244 ~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~-----~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
.+|.|+.|...++++ .|-.|.+|++..... +..++.|. .-|++..|+|...+++...+..|.|++-|++..
T Consensus 176 NSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 176 NSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred eeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 999999988888776 477899999864322 33333333 357889999988889999999999999999743
Q ss_pred cce------EE---------EecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 316 TPQ------VE---------IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 316 ~~~------~~---------~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
... .. +...-...|.++.|+++|++|++-+ --+|+|||++....
T Consensus 255 alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~ 313 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN 313 (460)
T ss_pred hhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC
Confidence 221 11 1111234688999999999988765 46899999976555
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-09 Score=117.27 Aligned_cols=200 Identities=14% Similarity=0.203 Sum_probs=147.5
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC--cEEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT--TVKV 182 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg--~I~i 182 (643)
+..+.+..|+...+|++|+-+.++|++|+..|.|+++++.++........|...|+-+.-+.|+..+++.+.-. ...+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 34556777889999999999999999999999999999999999999999999999999999998876654432 4678
Q ss_pred EECCC-CeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEec----cCCCcEEEEEEcCCCCEEEE
Q 006497 183 WDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH----GHKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 183 wdl~~-~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~----~~~~~i~~l~~sp~g~~l~s 257 (643)
|++.+ +....++. .-.++.|+.....-+.|+......|||+.++..+.++- +....-++..|+|+..+|+
T Consensus 1172 W~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl- 1246 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL- 1246 (1516)
T ss_pred hccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe-
Confidence 99854 33334443 34578888665555666666778999999988776632 1222337889999988776
Q ss_pred EECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEE
Q 006497 258 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 320 (643)
.|| .+||+|..+.++.|..... -..=.|+| ++.-++.-+ .|||+++.+.+..
T Consensus 1247 --ndG--vLWDvR~~~aIh~FD~ft~-~~~G~FHP-~g~eVIINS-----EIwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1247 --NDG--VLWDVRIPEAIHRFDQFTD-YGGGGFHP-SGNEVIINS-----EIWDMRTFKLLHS 1298 (1516)
T ss_pred --eCc--eeeeeccHHHHhhhhhhee-cccccccC-CCceEEeec-----hhhhhHHHHHHhc
Confidence 355 5899998888887775552 22346888 566666544 3699887654433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-07 Score=102.86 Aligned_cols=182 Identities=24% Similarity=0.339 Sum_probs=134.6
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
...+.|++++ ++.|+.|+.+|.|++++..... .....|... .-+|.++++|+.||+|.|..+.+.+...+
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3566777775 6799999999999999876543 223334333 55899999999999999999988777766
Q ss_pred eeccCCCeEEEEEcCC-----CCEEEEEECCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEE
Q 006497 194 LTGHGWDVKSVDWHPT-----KSLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 266 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~-----~~~l~sgs~dg~I~iwD~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 266 (643)
+. ....+.+|+++|+ .+.+++|+..| +.++.-+ ..+.-..+....+.|.+++|. |++||-++.+| |+|
T Consensus 109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred Ee-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 65 5668999999997 46899999888 7777643 112222455667899999996 78888888776 999
Q ss_pred EECCCCeEEEEeecCCCCe------EEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 267 YDIRAMKELESFRGHRKDV------TALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 267 wd~~~~~~~~~~~~~~~~I------~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
||+.+.+.+..+......+ ..+.|.+ +..|+.|=.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~--~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQD--EDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecC--CCeEEEecCC-eEEEEEEe
Confidence 9999988887776443332 4677875 5566665544 78888876
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-07 Score=97.35 Aligned_cols=153 Identities=16% Similarity=0.207 Sum_probs=104.0
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---E
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---K 149 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~---~ 149 (643)
.|.--+++..+++|+.|+..|.+++|+...++....-. +..+.+..++.+.+..++|.|+..|.|.|+-++.... .
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 34445566678999999999999999977665433222 2445566667788888888999999999997765321 1
Q ss_pred --Ee-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC----eeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 150 --AN-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 150 --~~-~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~----~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
.. -+.|+..|++++|++|+..+++|...|+|..-.++.. .....+....+.|..|++. ++.+|++... . .
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~-r-~ 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT-R-C 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh-h-h
Confidence 11 1347889999999999999999999999999888762 1122333456677777766 3333333332 2 3
Q ss_pred EEEECCC
Q 006497 223 KLWDAKS 229 (643)
Q Consensus 223 ~iwD~~~ 229 (643)
.+++.+.
T Consensus 192 ~Lc~tE~ 198 (726)
T KOG3621|consen 192 ILCQTEA 198 (726)
T ss_pred heeecch
Confidence 3555553
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-06 Score=95.02 Aligned_cols=269 Identities=11% Similarity=0.070 Sum_probs=164.9
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCC------EE--EEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCC
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA------IR--SMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAH 155 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~------V~--~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~ 155 (643)
+..|++++.++.|+-+|.++++.+-.+...... +. .+... ++..++.++.++.|.-+|.++++.+-.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 445777888899999999998877666543320 10 11111 2267888889999999999999988776543
Q ss_pred CCC-----eE-EEEEecCCCEEEEEe---------CCCcEEEEECCCCeeeeEeeccCC--------------------C
Q 006497 156 KES-----VR-DLSFCRTDLKFCSCS---------DDTTVKVWDFARCQEERSLTGHGW--------------------D 200 (643)
Q Consensus 156 ~~~-----I~-~l~~s~d~~~l~s~s---------~dg~I~iwdl~~~~~~~~~~~~~~--------------------~ 200 (643)
... +. ...+. + ..++.++ .++.|..+|.++++.+..+..... .
T Consensus 140 ~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 321 11 12222 2 3444443 367899999999988776653211 0
Q ss_pred e-EEEEEcCCCCEEEEEECCC------------------cEEEEECCCCceeEEeccCCCcEE------EEEEc----CC
Q 006497 201 V-KSVDWHPTKSLLVSGGKDS------------------LVKLWDAKSGRELCSFHGHKNMVL------CVKWN----QN 251 (643)
Q Consensus 201 V-~~l~~sp~~~~l~sgs~dg------------------~I~iwD~~~~~~~~~~~~~~~~i~------~l~~s----p~ 251 (643)
| ...+++..+.++++++.|+ .|.-+|+++++.+..+......+. ...+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234454567788887665 799999999999887653211110 01111 13
Q ss_pred CC---EEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE------------------eCCCcEEEE
Q 006497 252 GN---WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG------------------SLDGSIFHW 310 (643)
Q Consensus 252 g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg------------------s~dg~I~iw 310 (643)
+. ++++++.+|.+..+|.++++.+....... ..++.++ +.++.+ ..+|.|...
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 33 67888899999999999999988765321 1122222 222221 235678788
Q ss_pred ECCCCcceEEEeccc-C------cce--EEEEEcCCCCEEEEEECCCeEEEEecCCCCCcccc
Q 006497 311 LVGHETPQVEIHNVH-D------NTV--WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 364 (643)
Q Consensus 311 d~~~~~~~~~~~~~h-~------~~V--~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~ 364 (643)
|..+++.+.+..... . ... ..+.. .+.+|++++.||.|+.+|.+. ++..|.
T Consensus 372 D~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~t-G~~lW~ 431 (488)
T cd00216 372 DPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATT-GKELWK 431 (488)
T ss_pred eCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCC-CceeeE
Confidence 887777666654320 0 111 12222 457888899999999999854 444444
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.9e-07 Score=97.64 Aligned_cols=206 Identities=12% Similarity=0.166 Sum_probs=141.6
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCC-EEEEEEcCCCCEEEEEeCCCc-----EEEEECCCC------
Q 006497 79 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDGGA-----IKYWQNNMN------ 146 (643)
Q Consensus 79 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~s~~~~~L~sg~~dg~-----V~iwd~~~~------ 146 (643)
+|++.+..++.|+.+|.|.+++- ..+.+..++.+... |..+....+.++|++.+.|+. |+|||++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 45677889999999999999883 44556778888777 444443434468888777654 899997643
Q ss_pred ceEE--eec-----CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC--C--CCeeeeEeeccCCCeEEEEEcCCCCEEEE
Q 006497 147 NVKA--NKS-----AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF--A--RCQEERSLTGHGWDVKSVDWHPTKSLLVS 215 (643)
Q Consensus 147 ~~~~--~~~-----~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl--~--~~~~~~~~~~~~~~V~~l~~sp~~~~l~s 215 (643)
.+.. .+. .....+.+++++.+-+.+|+|-.||.|..+.- . .+............|+.+++..+++.++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 1221 111 23567889999999999999999999999843 1 22222223335678999999988887333
Q ss_pred EECCCcEEEEECCCCc-eeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeE
Q 006497 216 GGKDSLVKLWDAKSGR-ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVT 286 (643)
Q Consensus 216 gs~dg~I~iwD~~~~~-~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~ 286 (643)
+..-..|.+|.+.... ....+..+...+.|..+++....|++++ +..|.+||....+....|. +++....
T Consensus 189 v~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 189 VATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCeEEEE
Confidence 3344679999988433 2455777888899999987555455554 4569999988766666666 5554443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.2e-08 Score=100.08 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=121.3
Q ss_pred EEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-----ceeEEeccCCCcEEEE
Q 006497 172 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCV 246 (643)
Q Consensus 172 ~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-----~~~~~~~~~~~~i~~l 246 (643)
++.+.+-.|-+-|++++.. ..+. ..+.|.++.|...+++++.|+.+|.|..+|++.+ .+...+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 5556677888889887643 2333 5678999999988999999999999999999965 2333443 88899999
Q ss_pred EEcC-CCCEEEEEECCCcEEEEECCCCeE---EEEeecCCCCeEEEEE--ecCCCCEEEEEeCCCcEEEEECCCCcceEE
Q 006497 247 KWNQ-NGNWVLTASKDQIIKLYDIRAMKE---LESFRGHRKDVTALAW--HPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320 (643)
Q Consensus 247 ~~sp-~g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~I~~l~~--sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 320 (643)
.... ++.+|++.+.+|+|++||+|..++ +..+++|...-.-+-+ .+ .+..+++++.|...+||.++.+..+..
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccc-ccceEEEccCeeEEEEEecccCceeec
Confidence 8877 788999999999999999998777 8899988765544433 34 567888899999999999988776655
Q ss_pred Eecc---cCcceEEEEEc
Q 006497 321 IHNV---HDNTVWDLAWH 335 (643)
Q Consensus 321 ~~~~---h~~~V~~l~~s 335 (643)
+... .+..+++++|.
T Consensus 384 ipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFD 401 (425)
T ss_pred cCCCCccccccccceehh
Confidence 4321 22245555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-07 Score=96.87 Aligned_cols=209 Identities=15% Similarity=0.194 Sum_probs=140.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCC-eEEEEEecCCCEEEEEeCCC-----cEEEEECCCC-
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDT-----TVKVWDFARC- 188 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~-I~~l~~s~d~~~l~s~s~dg-----~I~iwdl~~~- 188 (643)
.|.| |++.+..+|.|+.+|.|.+.+-. -+....+..+... |..+....+.++|++.+.|. .|+|||++..
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 4544 56778899999999999888632 3344556666666 55554444446788877764 5999999643
Q ss_pred -----eeee--Eeec-----cCCCeEEEEEcCCCCEEEEEECCCcEEEEECC--C--CceeEEeccCCCcEEEEEEcCCC
Q 006497 189 -----QEER--SLTG-----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK--S--GRELCSFHGHKNMVLCVKWNQNG 252 (643)
Q Consensus 189 -----~~~~--~~~~-----~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~--~--~~~~~~~~~~~~~i~~l~~sp~g 252 (643)
.++. .+.. ....+.+++++.+-+.+|+|-.||.|.++.=+ . +.........+..|+.+++..++
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~ 183 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDG 183 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCC
Confidence 1221 1111 34578899999999999999999999998422 1 12222223356789999999998
Q ss_pred CEEEEEECCCcEEEEECCCCe-EEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcce
Q 006497 253 NWVLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 329 (643)
Q Consensus 253 ~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 329 (643)
..++.......|.+|.+.... .+..+..+...+.|.++++ ....|++++ +..|.+|+.+..+....+..+|....
T Consensus 184 ~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~-~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 184 KSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSD-GTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred ceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCC-CCccEEEec-CceEEEEcCCCcceeeeecCCCeEEE
Confidence 874444445579999987433 2555777888899999987 344344444 44899999987776666665555443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.9e-08 Score=96.84 Aligned_cols=241 Identities=16% Similarity=0.189 Sum_probs=169.0
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCC
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM---NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARC 188 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~---~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~ 188 (643)
|.+.|+.+.-. ..+++++++.||.++.|.-.. -+.+..+..|...|.+++.+-++..+++.+. |..++++|+++.
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 67777776554 457999999999999996443 2445555678889999999999999999777 999999999887
Q ss_pred eeeeEeeccCCCeEEEEEcC-CC---CEEEE-EECCCcEEEEECCCCc--eeEEeccCCCcEEEEEEcCCCCEEEEEECC
Q 006497 189 QEERSLTGHGWDVKSVDWHP-TK---SLLVS-GGKDSLVKLWDAKSGR--ELCSFHGHKNMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 189 ~~~~~~~~~~~~V~~l~~sp-~~---~~l~s-gs~dg~I~iwD~~~~~--~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 261 (643)
..+.-++... .-..++|.- .| ..|++ .-.++.|.|+|-.... ....-+-|...|.++.+++.+..+++....
T Consensus 87 DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 87 DMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred chhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 6654433211 112222321 22 13333 3467889999977543 333445688999999999999999999999
Q ss_pred CcEEEEECCC------CeE---------EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc--
Q 006497 262 QIIKLYDIRA------MKE---------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-- 324 (643)
Q Consensus 262 g~I~iwd~~~------~~~---------~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-- 324 (643)
|.|.-|.... .+. +..+...+...+++.|++ ++..+.+-+.|..|+++++.+++....+...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t 244 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLT 244 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhhccch
Confidence 9999998762 111 122233456678999999 7899999999999999998776543222110
Q ss_pred -----------------------------cC-cceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 325 -----------------------------HD-NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 325 -----------------------------h~-~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
|. ..-+.++|...+++|+-++-=| |++.+++.
T Consensus 245 ~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 245 DAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred hhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 11 1245678888899888877554 67777654
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-07 Score=90.18 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=149.4
Q ss_pred EEEEeCCCCceEEEEccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC-CEEEE
Q 006497 96 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD-LKFCS 173 (643)
Q Consensus 96 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~-~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~-~~l~s 173 (643)
|++.+..+.+....+..+...|.+++|++..+ +|..++.+..|+|.|+++..++..+..+ ..+++++|.-|+ ++|..
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 55555555555556677888999999999876 7888999999999999999988888776 889999999876 55778
Q ss_pred EeCCCcEEEEECCCCeee-eEeec--cCCCeEEEEEc------CCCCEEEEEECCCcEEEEECCCC----ceeEEeccCC
Q 006497 174 CSDDTTVKVWDFARCQEE-RSLTG--HGWDVKSVDWH------PTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHK 240 (643)
Q Consensus 174 ~s~dg~I~iwdl~~~~~~-~~~~~--~~~~V~~l~~s------p~~~~l~sgs~dg~I~iwD~~~~----~~~~~~~~~~ 240 (643)
|..+|.|.|||++..+.. ..+.+ ....|..|+.- +.+.+|+....+ +..|++.-. -++..+. ..
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~p 330 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-PP 330 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-CC
Confidence 888999999999764332 12211 12234443332 234444444433 556665421 1222222 23
Q ss_pred CcEEEEEEcCCCCEEEEEECC-C------cEEE-EECCCCeEEEEee-cC-CCC------eEEEEEecCCCCEEEEEeCC
Q 006497 241 NMVLCVKWNQNGNWVLTASKD-Q------IIKL-YDIRAMKELESFR-GH-RKD------VTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 241 ~~i~~l~~sp~g~~l~s~s~d-g------~I~i-wd~~~~~~~~~~~-~~-~~~------I~~l~~sp~~~~~l~sgs~d 304 (643)
+.+.++.+.+..+.++..... . .|-. -|-+++..+...+ .+ ... -..+.-.+++..++.+++..
T Consensus 331 G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~t 410 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDST 410 (463)
T ss_pred cceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCc
Confidence 445555555544444433322 1 1111 1222333222211 11 000 01111122233344455566
Q ss_pred CcEEEEECCCCcceEEEecccCcceEEEEEcCC--CCEEEEEECCCeEEEEecC
Q 006497 305 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 305 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d--~~~L~sgs~Dg~V~iWd~~ 356 (643)
+.+.+||.........+.. +..|.+++.... +.+|++- .|..++||+.+
T Consensus 411 n~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 411 NELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred ceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 8999999988776666543 478888887653 3456555 46789999765
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.2e-08 Score=97.25 Aligned_cols=159 Identities=14% Similarity=0.173 Sum_probs=120.9
Q ss_pred EEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----eeeeEeeccCCCeEEE
Q 006497 130 VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSV 204 (643)
Q Consensus 130 ~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~-----~~~~~~~~~~~~V~~l 204 (643)
++.+.+-.|.+-|++++.... + ..++.|.++.|...+++++.|+.+|.|.++|++.. .+...+ -|.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~qs-f-~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQS-F-QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccccc-c-ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhh
Confidence 455566678888888765433 2 26678999999988999999999999999999654 233333 388899998
Q ss_pred EEcC-CCCEEEEEECCCcEEEEECCCCce---eEEeccCCCcEEEEEE--cCCCCEEEEEECCCcEEEEECCCCeEEEEe
Q 006497 205 DWHP-TKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVKW--NQNGNWVLTASKDQIIKLYDIRAMKELESF 278 (643)
Q Consensus 205 ~~sp-~~~~l~sgs~dg~I~iwD~~~~~~---~~~~~~~~~~i~~l~~--sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 278 (643)
.... ++.+|.+.+.+|+|++||++--++ +.++++|-+.-.-+-+ .+.+..|++++.|...+||.++.+..+.++
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 8776 778999999999999999997666 8888888665443333 445678888999999999999999998887
Q ss_pred ecCC----CCeEEEEEe
Q 006497 279 RGHR----KDVTALAWH 291 (643)
Q Consensus 279 ~~~~----~~I~~l~~s 291 (643)
.... ..+.++++.
T Consensus 385 pf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFD 401 (425)
T ss_pred CCCCccccccccceehh
Confidence 6332 244555554
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.8e-06 Score=87.92 Aligned_cols=262 Identities=13% Similarity=0.221 Sum_probs=149.4
Q ss_pred cCCCCEEEEEE---------CCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 81 TPTGRRLITGS---------QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 81 spdg~~L~tgs---------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
|+|+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.++++.++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 57888777643 246799999999765554443 67788999999999998876 47899998877754433
Q ss_pred ecCC-----------------CCCeEEEEEecCCCEEEEEeCC-Cc----------------------------------
Q 006497 152 KSAH-----------------KESVRDLSFCRTDLKFCSCSDD-TT---------------------------------- 179 (643)
Q Consensus 152 ~~~~-----------------~~~I~~l~~s~d~~~l~s~s~d-g~---------------------------------- 179 (643)
...- -+.-..+.|+||+++||....| ..
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 1223568899999998865432 22
Q ss_pred -EEEEECCCCeeee-Ee----eccCCCeEEEEEcCCCCEEEEE--ECCC---cEEEEECCCCceeEEec-cCCCcE---E
Q 006497 180 -VKVWDFARCQEER-SL----TGHGWDVKSVDWHPTKSLLVSG--GKDS---LVKLWDAKSGRELCSFH-GHKNMV---L 244 (643)
Q Consensus 180 -I~iwdl~~~~~~~-~~----~~~~~~V~~l~~sp~~~~l~sg--s~dg---~I~iwD~~~~~~~~~~~-~~~~~i---~ 244 (643)
+.|+|+++++... .. ......+..+.|.++++.|++. ..+. .|.++|..++++...+. .....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3334444433211 11 1223457788998888844443 3332 36777887765543332 122222 3
Q ss_pred EEEEc-CCCC-EEEEEECCCc--EEEEECCCCeEEEEeecCCCCeEE-EEEecCCCCEEEEEeCCC--cEEEEECCCC-c
Q 006497 245 CVKWN-QNGN-WVLTASKDQI--IKLYDIRAMKELESFRGHRKDVTA-LAWHPFHEEYFVSGSLDG--SIFHWLVGHE-T 316 (643)
Q Consensus 245 ~l~~s-p~g~-~l~s~s~dg~--I~iwd~~~~~~~~~~~~~~~~I~~-l~~sp~~~~~l~sgs~dg--~I~iwd~~~~-~ 316 (643)
.+.|. +++. +|.....||. |.++|...+. ...+....-.|+. +.|+..++.+++++..++ .-.||.+... .
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~ 317 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG 317 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence 45554 5544 5555667775 5555655554 4455556666755 677775566666776533 4445544333 3
Q ss_pred ceEEEecccCcceEEEEEcCCCCEEEEEE
Q 006497 317 PQVEIHNVHDNTVWDLAWHPIGYLLCSGS 345 (643)
Q Consensus 317 ~~~~~~~~h~~~V~~l~~s~d~~~L~sgs 345 (643)
.....+.........+.||+++++++...
T Consensus 318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 33333333333236899999998877544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.70 E-value=5.1e-07 Score=90.69 Aligned_cols=242 Identities=10% Similarity=0.108 Sum_probs=144.2
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECC
Q 006497 67 SLNKNRCSINRVLWTPTGR-RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~-~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~-~~L~sg~~dg~V~iwd~~ 144 (643)
.+..|..-|..++||+..+ +|..++.+.+|+|.|+++...+..+..+ ..+++++|.-|+ ++|+.|..+|.|.|||+.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 5667888999999999887 7888999999999999999888888877 889999998765 678889999999999987
Q ss_pred CCceE-Eeec--CCCCCeEEEEEec------CCCEEEEEeCCCcEEEEECCCC--eeeeEeec-cCCCeEEEEEcCCCCE
Q 006497 145 MNNVK-ANKS--AHKESVRDLSFCR------TDLKFCSCSDDTTVKVWDFARC--QEERSLTG-HGWDVKSVDWHPTKSL 212 (643)
Q Consensus 145 ~~~~~-~~~~--~~~~~I~~l~~s~------d~~~l~s~s~dg~I~iwdl~~~--~~~~~~~~-~~~~V~~l~~sp~~~~ 212 (643)
..+-. ..+. .....|..++.-+ .+..|+.... .+..|++.-. .....+.. ..+...++.+++..+.
T Consensus 267 ~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh 344 (463)
T KOG1645|consen 267 QPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNH 344 (463)
T ss_pred CCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecCccce
Confidence 54321 1111 1233444443322 2333333332 2455655221 11111211 2334455666654454
Q ss_pred EEEEECCC-------cEE-EEECCCCceeEEec-cC-CCc------EEEEEEcCCCCEEE-EEECCCcEEEEECCCCeEE
Q 006497 213 LVSGGKDS-------LVK-LWDAKSGRELCSFH-GH-KNM------VLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKEL 275 (643)
Q Consensus 213 l~sgs~dg-------~I~-iwD~~~~~~~~~~~-~~-~~~------i~~l~~sp~g~~l~-s~s~dg~I~iwd~~~~~~~ 275 (643)
++...... .|- --|.++|..+...+ .+ .+. -..+.-.++.++|+ ++...+.+.+||..+++.+
T Consensus 345 ~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evv 424 (463)
T KOG1645|consen 345 LLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVV 424 (463)
T ss_pred EEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhee
Confidence 44443321 011 11223333332221 11 000 01111123445555 4556678999999999999
Q ss_pred EEeecCCCCeEEEEEecCCCC-EEEEEeCCCcEEEEECC
Q 006497 276 ESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 276 ~~~~~~~~~I~~l~~sp~~~~-~l~sgs~dg~I~iwd~~ 313 (643)
.++... ..|.+++....++. +|++- .|..++||..+
T Consensus 425 Q~l~~~-epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~e 461 (463)
T KOG1645|consen 425 QTLALS-EPVLDICPNDTNGSSYLALL-TDDRVHIYKNE 461 (463)
T ss_pred eecccC-cceeecceeecCCcchhhhe-ecceEEEEecC
Confidence 988744 77888776654444 45544 46688888653
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.1e-07 Score=98.96 Aligned_cols=181 Identities=14% Similarity=0.177 Sum_probs=139.6
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEE
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLS 163 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~ 163 (643)
...++.|+-...+..+|+.+.+..+........|+-++. ++++|.+|...|+|.+-|.++.+.+.++..|.+.|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeeccccceeeee
Confidence 445667777777888899888877777666656766665 578999999999999999999999999999999999877
Q ss_pred EecCCCEEEEEeC---------CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCC-CCEEEEEECCCcEEEEEC---CCC
Q 006497 164 FCRTDLKFCSCSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA---KSG 230 (643)
Q Consensus 164 ~s~d~~~l~s~s~---------dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~---~~~ 230 (643)
. .|+.|++|+. |.-|+|||++..+.+.-+.-+.+. .-+.|+|. ...+++++..|...+.|. .+-
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP 301 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP 301 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence 6 6778998875 556899999877665544433322 44566664 356888888999999993 332
Q ss_pred -ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 231 -RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 231 -~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
..+..+....+.+..++++++++.++.+..+|.|.+|.-
T Consensus 302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 223334445566999999999999999999999999973
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=95.60 Aligned_cols=182 Identities=13% Similarity=0.190 Sum_probs=132.6
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
.+.|+|++++ +++|+.|+-+|.|++++.... . .+...|... ..+|+++++|+.||+|.|..+.+.+....
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 5578888887 578999999999999986643 2 333334433 56799999999999999998887776665
Q ss_pred ecCCCCCeEEEEEecC-----CCEEEEEeCCCcEEEEECCC--CeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 152 KSAHKESVRDLSFCRT-----DLKFCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d-----~~~l~s~s~dg~I~iwdl~~--~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
+ .....+.+++++|| .+.+++|+..| +.++.-+= .+....+....+.|.++.|. |++||-++.+| |+|
T Consensus 109 ~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 109 Y-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred E-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 4 35678999999998 46689998888 77765311 11112345567899999996 88999998877 999
Q ss_pred EECCCCceeEEeccCCCc------EEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 225 WDAKSGRELCSFHGHKNM------VLCVKWNQNGNWVLTASKDQIIKLYDIR 270 (643)
Q Consensus 225 wD~~~~~~~~~~~~~~~~------i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 270 (643)
||+.+++.+..+...... -..+.|.++. .|+.| ...+|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 999998887776543332 3457777554 45555 34478888887
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-05 Score=87.08 Aligned_cols=229 Identities=10% Similarity=0.075 Sum_probs=145.8
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCCCC-----EE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceE
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDHA-----IR-SMVWSHNDNWMVSGD---------DGGAIKYWQNNMNNVK 149 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~-----V~-~l~~s~~~~~L~sg~---------~dg~V~iwd~~~~~~~ 149 (643)
..+++++.++.|+-+|.++++.+-.+...... +. ...+. +.++++++ .++.|..+|.++++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 57888889999999999999988776543321 11 11222 24555554 3678899999999877
Q ss_pred EeecCCCC--------------------Ce-EEEEEecCCCEEEEEeCCC------------------cEEEEECCCCee
Q 006497 150 ANKSAHKE--------------------SV-RDLSFCRTDLKFCSCSDDT------------------TVKVWDFARCQE 190 (643)
Q Consensus 150 ~~~~~~~~--------------------~I-~~l~~s~d~~~l~s~s~dg------------------~I~iwdl~~~~~ 190 (643)
-.+..... .| ...++...+..++.++.++ .|.-+|+++++.
T Consensus 189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~ 268 (488)
T cd00216 189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV 268 (488)
T ss_pred eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCE
Confidence 76543211 01 1234444456677776554 799999999988
Q ss_pred eeEeeccCCCeE------EEEEc----CCCC---EEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEE
Q 006497 191 ERSLTGHGWDVK------SVDWH----PTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 191 ~~~~~~~~~~V~------~l~~s----p~~~---~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s 257 (643)
+..+......+. ...+. -++. .+++++.+|.|..+|.++++.+...... ...++.++ +.+++
T Consensus 269 ~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 269 KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 877653211110 01111 1233 6788889999999999999988776421 11223333 33333
Q ss_pred E------------------ECCCcEEEEECCCCeEEEEeecCC--------CCe--EEEEEecCCCCEEEEEeCCCcEEE
Q 006497 258 A------------------SKDQIIKLYDIRAMKELESFRGHR--------KDV--TALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 258 ~------------------s~dg~I~iwd~~~~~~~~~~~~~~--------~~I--~~l~~sp~~~~~l~sgs~dg~I~i 309 (643)
+ ..+|.|.-+|+++++.+.+..... ... ..+.. .+.+|++++.||.|+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~a 420 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRA 420 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEE
Confidence 2 236789999999999887776431 111 12222 4578888889999999
Q ss_pred EECCCCcceEEEec
Q 006497 310 WLVGHETPQVEIHN 323 (643)
Q Consensus 310 wd~~~~~~~~~~~~ 323 (643)
+|.++++.+.+...
T Consensus 421 ld~~tG~~lW~~~~ 434 (488)
T cd00216 421 FDATTGKELWKFRT 434 (488)
T ss_pred EECCCCceeeEEEC
Confidence 99999988777654
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.4e-07 Score=96.26 Aligned_cols=267 Identities=12% Similarity=0.150 Sum_probs=157.5
Q ss_pred EEEEEcCCCCEEEEEEC----CCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 76 NRVLWTPTGRRLITGSQ----SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
+-+.|+|...++++++- .|+|.||- ++++...... ..-.++++||++..-.|+.|-.-|.+.+|..++.+....
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv 96 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV 96 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence 34579999999988764 58899984 4555333222 223456799999988899999999999999988888777
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee--ccC--CC--eEEEEEcCCCC------EEEEEECC
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHG--WD--VKSVDWHPTKS------LLVSGGKD 219 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~--~~~--~~--V~~l~~sp~~~------~l~sgs~d 219 (643)
...|...|..+.|+++|..++++..-|.|.+|.+.....+.... .|+ .. ..|..+++++. ..++.+++
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe 176 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDE 176 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCch
Confidence 78899999999999999999999999999999876433332211 121 12 23444455531 23344444
Q ss_pred CcEE-EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC----------CCCeEEE
Q 006497 220 SLVK-LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH----------RKDVTAL 288 (643)
Q Consensus 220 g~I~-iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~----------~~~I~~l 288 (643)
..+- .++.+......+.. + .=.++|..+++++.+|+|+-.|-. +++....+.. ...|.++
T Consensus 177 ~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~-g~~~~V~k~dS~vQmLf~~~~eai~~i 247 (1416)
T KOG3617|consen 177 SALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQN-GRQRTVHKLDSEVQMLFMGYCEAISII 247 (1416)
T ss_pred hhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCC-CcEEEEEEccchHHHHHhcccceEEEE
Confidence 4332 33322111111111 1 013577788888889988887743 3333322211 1122222
Q ss_pred EEecCCCCEEE------------------EEeCCCcEEEEECC---CCcceEEEecccCcceEEEEEcCCCCEEEEEECC
Q 006497 289 AWHPFHEEYFV------------------SGSLDGSIFHWLVG---HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 289 ~~sp~~~~~l~------------------sgs~dg~I~iwd~~---~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
.-.- ...++. .|+..|.|.+-... .......+ .....++|++++..+..|+.|...
T Consensus 248 ~e~l-r~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~--e~ge~~~c~cY~~~~~~l~agt~~ 324 (1416)
T KOG3617|consen 248 IEFL-RDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGL--ELGEGILCMCYGEKEIRLWAGTKE 324 (1416)
T ss_pred eeec-eeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhh--hcCCceEEEEEeccceEEEecccC
Confidence 1111 000000 01111111111100 00000111 134579999999999999999999
Q ss_pred CeEEEEecC
Q 006497 348 HTTKFWCRN 356 (643)
Q Consensus 348 g~V~iWd~~ 356 (643)
|.|.+|.--
T Consensus 325 gnv~~w~~v 333 (1416)
T KOG3617|consen 325 GNVTIWLDV 333 (1416)
T ss_pred CcEEEeeec
Confidence 999999753
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00012 Score=74.30 Aligned_cols=243 Identities=9% Similarity=0.081 Sum_probs=149.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCcEEEEeCCCCceEEEEccCCC-------CEEEEEEcCCCCEEEEEeC--CCc
Q 006497 77 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGDD--GGA 137 (643)
Q Consensus 77 ~i~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~l~~h~~-------~V~~l~~s~~~~~L~sg~~--dg~ 137 (643)
.+.+++|++.+++++ ....|.+||..+.....++.--.. ..+.+.++.|++++++... .-.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 366789999888753 234699999999877765543322 1223577788888776543 356
Q ss_pred EEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeeeEee----ccCCC-eEEEEEcCCCC
Q 006497 138 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA-RCQEERSLT----GHGWD-VKSVDWHPTKS 211 (643)
Q Consensus 138 V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~-~~~~~~~~~----~~~~~-V~~l~~sp~~~ 211 (643)
|.|.|+..++.+..+..- + +..+ +-...+.|.+.|.||++....+. .++...+.. ...+. +..-++...+.
T Consensus 120 VtVVDl~~~kvv~ei~~P-G-C~~i-yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~ 196 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDTP-G-CWLI-YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG 196 (342)
T ss_dssp EEEEETTTTEEEEEEEGT-S-EEEE-EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT
T ss_pred EEEEECCCCceeeeecCC-C-EEEE-EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC
Confidence 888899888887766421 1 2222 21123468888899999999886 344432221 11122 22334445556
Q ss_pred EEEEEECCCcEEEEECCCCcee--EEeccC------C----CcEEEEEEcCCCCEEEEEEC--------CC--cEEEEEC
Q 006497 212 LLVSGGKDSLVKLWDAKSGREL--CSFHGH------K----NMVLCVKWNQNGNWVLTASK--------DQ--IIKLYDI 269 (643)
Q Consensus 212 ~l~sgs~dg~I~iwD~~~~~~~--~~~~~~------~----~~i~~l~~sp~g~~l~s~s~--------dg--~I~iwd~ 269 (643)
.++..+.+|.|+-.|+...... ..+... . +.-.-+++++..+.|++.-. |+ .|.+||+
T Consensus 197 ~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 197 RLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp EEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred eEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 6666788999999998765422 122110 1 11234778876666665431 11 5888899
Q ss_pred CCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe-CCCcEEEEECCCCcceEEEec
Q 006497 270 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 270 ~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~ 323 (643)
.+.+.+..+.. ...+.+|.++.++.-+|++.+ .++.|.+||..+++.+..+..
T Consensus 277 ~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 277 KTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp TTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 99999998874 346889999986666777655 578999999998876665543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-08 Score=103.95 Aligned_cols=258 Identities=15% Similarity=0.219 Sum_probs=156.3
Q ss_pred CCCeEEEEEcCCC--CEEEEEECCCcEEEEeCCCCce--EEEEccCCCCEEEEEEcC-CCCEEEEEe----CCCcEEEEE
Q 006497 72 RCSINRVLWTPTG--RRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSH-NDNWMVSGD----DGGAIKYWQ 142 (643)
Q Consensus 72 ~~~I~~i~~spdg--~~L~tgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~s~-~~~~L~sg~----~dg~V~iwd 142 (643)
...+.|+++.-+. ..+++|..+|.|.+-.+..... ......+...+++++|++ |.++||+|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4467888877654 4678899999999987654322 233456778899999987 456777763 457799999
Q ss_pred CCCCc----eEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcC-CCCEEEEE
Q 006497 143 NNMNN----VKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP-TKSLLVSG 216 (643)
Q Consensus 143 ~~~~~----~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp-~~~~l~sg 216 (643)
+.+.- ....+. .......+++|..+.+.+.+|.....|.++|++.. ...........+..+.++| ..+++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs-~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS-LDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh-hhhhhhhhhhhcccceecCCCCCceecc
Confidence 88761 111111 24455668899988888999988899999999742 1122222344577788888 66666655
Q ss_pred ECCCcEEEEE-CCCCc-eeEEeccCC----CcEEEEEEcCCC-CEEEEEE-CCCcEEEEECCCC--------eEEEE---
Q 006497 217 GKDSLVKLWD-AKSGR-ELCSFHGHK----NMVLCVKWNQNG-NWVLTAS-KDQIIKLYDIRAM--------KELES--- 277 (643)
Q Consensus 217 s~dg~I~iwD-~~~~~-~~~~~~~~~----~~i~~l~~sp~g-~~l~s~s-~dg~I~iwd~~~~--------~~~~~--- 277 (643)
. |+.|.+|| .++-+ .+..+.... ..+..++|+|.. ..+++.. ..++|++||+... .....
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s 293 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYES 293 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecc
Confidence 4 89999999 43322 222222222 248999999943 3455554 4578999998531 11111
Q ss_pred ---eecC--CCCeEEEEEecCC-CCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcC
Q 006497 278 ---FRGH--RKDVTALAWHPFH-EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 278 ---~~~~--~~~I~~l~~sp~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 336 (643)
++.. -..|.+..|++.. -+..+.+..+-.+..+++.. .+...|.++.+.+-|+.
T Consensus 294 ~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e-----~~~pa~s~p~n~L~~s~ 353 (783)
T KOG1008|consen 294 KYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE-----EVIPASSNPYNDLIFSF 353 (783)
T ss_pred cccccccccccceeecCcCcCCccceeEEeeccCChhhccchh-----heecccCCCcccchhhh
Confidence 1211 2467777887643 23344444444444444321 22223333555555553
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.1e-08 Score=103.63 Aligned_cols=240 Identities=15% Similarity=0.173 Sum_probs=154.8
Q ss_pred CCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCce--EEeecCCCCCeEEEEEecC-CCEEEEEe----CCCcEEEEE
Q 006497 114 DHAIRSMVWSHNDN--WMVSGDDGGAIKYWQNNMNNV--KANKSAHKESVRDLSFCRT-DLKFCSCS----DDTTVKVWD 184 (643)
Q Consensus 114 ~~~V~~l~~s~~~~--~L~sg~~dg~V~iwd~~~~~~--~~~~~~~~~~I~~l~~s~d-~~~l~s~s----~dg~I~iwd 184 (643)
...+.|+++..+.+ ++++|..+|.|.+-.+....- ......+....++++|++- .+.||++- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44677888766543 788899999999987654322 3344567788999999884 45566653 367899999
Q ss_pred CCCC--ee--eeEeec-cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC-ceeEEeccCCCcEEEEEEcC-CCCEEEE
Q 006497 185 FARC--QE--ERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG-RELCSFHGHKNMVLCVKWNQ-NGNWVLT 257 (643)
Q Consensus 185 l~~~--~~--~~~~~~-~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~-~~~~~~~~~~~~i~~l~~sp-~g~~l~s 257 (643)
+.+. .. ...+.. ......+++|..+.+++++|.....|.++|++.. .....+ ....+..+.++| ..+|+++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY~cs 213 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNYFCS 213 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCceec
Confidence 9775 11 112222 3455678999989999999999999999999832 222222 233567788888 7778876
Q ss_pred EECCCcEEEEE-CCCCeEEEEeecCC-----CCeEEEEEecCCCCEEEEEeCC-CcEEEEECCCCcc---------eEEE
Q 006497 258 ASKDQIIKLYD-IRAMKELESFRGHR-----KDVTALAWHPFHEEYFVSGSLD-GSIFHWLVGHETP---------QVEI 321 (643)
Q Consensus 258 ~s~dg~I~iwd-~~~~~~~~~~~~~~-----~~I~~l~~sp~~~~~l~sgs~d-g~I~iwd~~~~~~---------~~~~ 321 (643)
-. |+.|.+|| .++.+.......+. +.+..++|+|....++++...| ++|++||+..... +...
T Consensus 214 ~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~ 292 (783)
T KOG1008|consen 214 NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYE 292 (783)
T ss_pred cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeec
Confidence 65 99999999 55544322222222 2489999999777777777765 6899998743211 0011
Q ss_pred e---cccC---cceEEEEEcCCC--CEEEEEECCCeEEEEecC
Q 006497 322 H---NVHD---NTVWDLAWHPIG--YLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 322 ~---~~h~---~~V~~l~~s~d~--~~L~sgs~Dg~V~iWd~~ 356 (643)
. ..|. +.|.++.|++.. ...+++-..-.+.-+++.
T Consensus 293 s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 293 SKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVH 335 (783)
T ss_pred ccccccccccccceeecCcCcCCccceeEEeeccCChhhccch
Confidence 1 1122 457777787653 334444444455555553
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.1e-05 Score=89.41 Aligned_cols=237 Identities=11% Similarity=0.160 Sum_probs=145.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
++.|.++.|.-+.+-|+.+..+|.|.+-|.++..... .......|.+++|++|+..++..+.+.+|.+-+- +...+..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhc
Confidence 4689999999999999999999999999887765443 3456778999999999999999988888776542 2222211
Q ss_pred ee-----ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEE-----CCCc
Q 006497 194 LT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQI 263 (643)
Q Consensus 194 ~~-----~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-----~dg~ 263 (643)
.. ...+..-.+-|-.....+ -|+ .|.....+..............+.=++|+|--||.++++.. ....
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceee-ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 11 112233345554322221 121 12222222111111111001122236799999999999843 3379
Q ss_pred EEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEe---CCCcEEEEECCCCcce-EEEe-cccCcceEEEEEcCCC
Q 006497 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETPQ-VEIH-NVHDNTVWDLAWHPIG 338 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs---~dg~I~iwd~~~~~~~-~~~~-~~h~~~V~~l~~s~d~ 338 (643)
|+|||.+ +..-..-......-.+++|-| .+.++++-. .|+.|.++.-+....- ..+. ......|..++|+.++
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC
Confidence 9999976 443333333344457899999 777777653 4567888875322111 1111 1122349999999999
Q ss_pred CEEEE---EECCCeEEEEecC
Q 006497 339 YLLCS---GSNDHTTKFWCRN 356 (643)
Q Consensus 339 ~~L~s---gs~Dg~V~iWd~~ 356 (643)
.+|++ ......|++|-+.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CceeeeecccccceEEEEEec
Confidence 99988 5555669999763
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.8e-05 Score=86.15 Aligned_cols=222 Identities=10% Similarity=0.040 Sum_probs=134.8
Q ss_pred CCCEEEEEEC-CCcEEEEeCCCCceEEEEccC-CCCEEEEEE-------------------cCCCCEEEE-EeCCCcEEE
Q 006497 83 TGRRLITGSQ-SGEFTLWNGQSFNFEMILQAH-DHAIRSMVW-------------------SHNDNWMVS-GDDGGAIKY 140 (643)
Q Consensus 83 dg~~L~tgs~-dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~-------------------s~~~~~L~s-g~~dg~V~i 140 (643)
||++|++-.. +..|-..+++..+..+++..- ...+..++| .+||+.|.. .-..+.+.+
T Consensus 140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSv 219 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTA 219 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEE
Confidence 6788888764 566777777766655554321 122222332 334443322 223355667
Q ss_pred EECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC----CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEE
Q 006497 141 WQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d----g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sg 216 (643)
.|.++.++...+.. ......++++++++++++.+.+ .++...+..+...+..+... .+ .++..+|++..+
T Consensus 220 ID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--~i--ea~vkdGK~~~V- 293 (635)
T PRK02888 220 VDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--RI--EEAVKAGKFKTI- 293 (635)
T ss_pred EECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--HH--HHhhhCCCEEEE-
Confidence 77777666555433 2244667888899888877632 23333333322222222110 01 123447776665
Q ss_pred ECCCcEEEEECCC----C-ceeEEeccCCCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeE------------EEEe
Q 006497 217 GKDSLVKLWDAKS----G-RELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKE------------LESF 278 (643)
Q Consensus 217 s~dg~I~iwD~~~----~-~~~~~~~~~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~~~~------------~~~~ 278 (643)
.+++|.++|.++ + +.+..+. -......+.++|||+++++++ .+.+|.|+|+.+.+. +.+.
T Consensus 294 -~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev 371 (635)
T PRK02888 294 -GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP 371 (635)
T ss_pred -CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee
Confidence 367899999998 3 3444443 455678999999999988776 588999999988653 3333
Q ss_pred ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 006497 279 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 279 ~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~ 314 (643)
.. ...-...+|.. +++.+.+...|..|..||++.
T Consensus 372 ev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 372 EL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 32 22334567777 567888888999999999865
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-05 Score=83.97 Aligned_cols=224 Identities=16% Similarity=0.204 Sum_probs=123.3
Q ss_pred EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 006497 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189 (643)
Q Consensus 110 l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~ 189 (643)
+.........+.++|+++++++ +.||...|+.....+... .+.-..++|.. .+.+|+...+++|.|+.--+.+
T Consensus 28 lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcCccc
Confidence 3334555788999999998888 556777888744333322 23445678887 4557777778999997432222
Q ss_pred eeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 190 ~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
....+.. ...+..|-. |.+|++.+.+ .|.+||+.+++.++++... .|..+.|++++++++..+.+ .+.|++.
T Consensus 101 ~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred cceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 2223332 223444443 7777777654 8999999999999998743 38999999999999988755 6777775
Q ss_pred CCC-----------eEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCC
Q 006497 270 RAM-----------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 270 ~~~-----------~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~ 338 (643)
+.. ..+..+......|.+.+|.. + .|+-.+.. .|+.+ +......+... +..+.=+.+.++.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~--d-~fiYtT~~-~lkYl-~~Ge~~~i~~l---d~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVE--D-CFIYTTSN-HLKYL-VNGETGIIAHL---DKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEET--T-EEEEE-TT-EEEEE-ETTEEEEEEE----SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEc--C-EEEEEcCC-eEEEE-EcCCcceEEEc---CCceEEEEEEccC
Confidence 432 02333332357889999974 2 55544444 77663 22222222222 4466777777777
Q ss_pred CEEEEEECCCeEEEEecC
Q 006497 339 YLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 339 ~~L~sgs~Dg~V~iWd~~ 356 (643)
+.|+....|+.|..+.++
T Consensus 245 ~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELD 262 (443)
T ss_dssp TEEEEE-TT--EEEEE--
T ss_pred CEEEEEECCCCEEEEEEC
Confidence 889999999999999875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00026 Score=75.97 Aligned_cols=190 Identities=9% Similarity=0.103 Sum_probs=109.0
Q ss_pred cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------eEEeecCCCCCeEEEEEecCC
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN------VKANKSAHKESVRDLSFCRTD 168 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~------~~~~~~~~~~~I~~l~~s~d~ 168 (643)
.|.||+.. |+.+..+.-..+.|.++.|+.+ ..|++...||.++++|+.... ...........+....+..+|
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 49999865 4556665555589999999875 556677899999999986333 111111111222222333344
Q ss_pred CEEEEEeCCCcEEEEECCCCe-eeeEeeccCC---------CeEE-EEEcCCCCEEEEEECCCcEEEEECCCCceeEEec
Q 006497 169 LKFCSCSDDTTVKVWDFARCQ-EERSLTGHGW---------DVKS-VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 237 (643)
Q Consensus 169 ~~l~s~s~dg~I~iwdl~~~~-~~~~~~~~~~---------~V~~-l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~ 237 (643)
++.-..++.|.+.+-.... ..+.+..... .... ..++.+....+....++.|.+.|-...+. +.
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~ 214 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID 214 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc
Confidence 3333445555554332211 1111110000 0000 22333444444444555555444332211 21
Q ss_pred cCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC-CCCeEEEEEec
Q 006497 238 GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-RKDVTALAWHP 292 (643)
Q Consensus 238 ~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-~~~I~~l~~sp 292 (643)
..+.+..+++|+++++||.-..+|.+.|.+.+-.+.+.++... ......+.|+-
T Consensus 215 -~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 215 -SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred -CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 2457999999999999999999999999987766777777654 45677888874
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=4e-05 Score=83.56 Aligned_cols=263 Identities=11% Similarity=0.059 Sum_probs=154.6
Q ss_pred EEEEECCCcEEEEeCCCCceEEEEccC-------------CCCEE-------EEEE--------c-----CCCCEEEEEe
Q 006497 87 LITGSQSGEFTLWNGQSFNFEMILQAH-------------DHAIR-------SMVW--------S-----HNDNWMVSGD 133 (643)
Q Consensus 87 L~tgs~dg~I~iwd~~~~~~~~~l~~h-------------~~~V~-------~l~~--------s-----~~~~~L~sg~ 133 (643)
+.+|+..|.|+|+-+-+++.++.+.-. ...|. .+.| | .||++|+.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 557778889999988777766554210 00111 0111 1 1567787766
Q ss_pred C-CCcEEEEECCCCceEEeec-CCCCCeEEEE-------------------EecCCCEEEE-EeCCCcEEEEECCCCeee
Q 006497 134 D-GGAIKYWQNNMNNVKANKS-AHKESVRDLS-------------------FCRTDLKFCS-CSDDTTVKVWDFARCQEE 191 (643)
Q Consensus 134 ~-dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~-------------------~s~d~~~l~s-~s~dg~I~iwdl~~~~~~ 191 (643)
. +..|...+++..++.+.+. .....+..++ +.+|++.+.. .-..+.+.++|.++.+..
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~ 228 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVA 228 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEE
Confidence 4 4566666666554433332 1111222222 2334544322 223456777788777666
Q ss_pred eEeeccCCCeEEEEEcCCCCEEEEEECCC----cEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 267 (643)
Q Consensus 192 ~~~~~~~~~V~~l~~sp~~~~l~sgs~dg----~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iw 267 (643)
..+... .....++++++++++++.+.+. ++...|..+...+..+.... + .++..+|++..+ .++.|.++
T Consensus 229 ~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VI 301 (635)
T PRK02888 229 WQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVV 301 (635)
T ss_pred EEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEE
Confidence 665532 3556788899999988876422 23333333222222221110 0 123457887766 36789999
Q ss_pred ECCC----CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceE-----------EEecccCcceEEE
Q 006497 268 DIRA----MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV-----------EIHNVHDNTVWDL 332 (643)
Q Consensus 268 d~~~----~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~-----------~~~~~h~~~V~~l 332 (643)
|.++ +..+..+..-......+.++|++..+++++..+.+|.|.|+.+.+..+ ..... ...-...
T Consensus 302 D~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHT 380 (635)
T PRK02888 302 DGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHT 380 (635)
T ss_pred ECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceE
Confidence 9998 334444444667788999999555556666678999999997755311 11111 2234567
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCC
Q 006497 333 AWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 333 ~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+|+.+|+...+...|..|..|+++.
T Consensus 381 aFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 381 AFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCCEEEeEeecceeEEEehHH
Confidence 8999999888999999999999875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.48 E-value=0.00011 Score=74.49 Aligned_cols=257 Identities=10% Similarity=0.039 Sum_probs=157.9
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCceEEeecCCC-------
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIKYWQNNMNNVKANKSAHK------- 156 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~----------~dg~V~iwd~~~~~~~~~~~~~~------- 156 (643)
+.|+|+|.++++.+-.+.. +-.-.+..+++++.++++. ..-.|.+||..+......+..-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4799999999888777654 2333467789999888653 34569999999887666543221
Q ss_pred CCeEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC-CCcee
Q 006497 157 ESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK-SGREL 233 (643)
Q Consensus 157 ~~I~~l~~s~d~~~l~s~s~--dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~-~~~~~ 233 (643)
.....++++.|++++++... ...|.|.|+...+.+..+..-. ...-.-+ .++.+.+-|.||.+....+. .|+..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-EEEEEec--CCCceEEEecCCceEEEEECCCCCEe
Confidence 12234677888888776543 4678899998888877776432 1111112 23458888899999988887 45544
Q ss_pred EEe----ccCCCc-EEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEeecCC----------CCeEEEEEecCCCC
Q 006497 234 CSF----HGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE--LESFRGHR----------KDVTALAWHPFHEE 296 (643)
Q Consensus 234 ~~~----~~~~~~-i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~~----------~~I~~l~~sp~~~~ 296 (643)
.+. ...+.. +..-++...+..++..+.+|.|+-.|+..... ...+.... +.-.-+++++..+.
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence 222 112222 22334455556676688899999998875432 22222111 12334667663334
Q ss_pred EEEEEe--CCC-------cEEEEECCCCcceEEEecccCcceEEEEEcCCCC-EEEEEE-CCCeEEEEecCC
Q 006497 297 YFVSGS--LDG-------SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGS-NDHTTKFWCRNR 357 (643)
Q Consensus 297 ~l~sgs--~dg-------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~-~L~sgs-~Dg~V~iWd~~~ 357 (643)
+++.-. .++ .|.++|+.+.+.+.++... ..+.+|..+.|.+ +|++.+ .++.|.+||...
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 433221 111 4777788888777776653 3688999999865 666554 589999999965
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.7e-06 Score=94.01 Aligned_cols=258 Identities=14% Similarity=0.224 Sum_probs=147.1
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee--
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-- 152 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~-- 152 (643)
++++||+|..-.|+.|-.-|.+.+|+..+.+.......|...|..+.|+++|..|+++..-|.|.+|..+....+...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~ 141 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI 141 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence 667999999988999999999999998888877777889999999999999999999999999999976532222211
Q ss_pred cCC--CC--CeEEEEEecCCC------EEEEEeCCCcEE-EEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 153 SAH--KE--SVRDLSFCRTDL------KFCSCSDDTTVK-VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 153 ~~~--~~--~I~~l~~s~d~~------~l~s~s~dg~I~-iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
..| .. ...|...+.++. ..++++++..+- .++.+.....+... + . =.++|..++.++.+|+
T Consensus 142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~-k------s-gv~~g~~F~~~~~~Gt 213 (1416)
T KOG3617|consen 142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE-K------S-GVPKGTEFLFAGKSGT 213 (1416)
T ss_pred hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc-c------c-CCCCCcEEEEEcCCce
Confidence 111 12 233344444431 133444444333 33332211111111 1 1 1357888888999999
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC----------------CCCeE-----------
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI----------------RAMKE----------- 274 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~----------------~~~~~----------- 274 (643)
|+..|-+ +++....+. ++.| .+-|.+...-|++...+-++.++-+ +.|..
T Consensus 214 Vyyvdq~-g~~~~V~k~-dS~v-QmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssG 290 (1416)
T KOG3617|consen 214 VYYVDQN-GRQRTVHKL-DSEV-QMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSG 290 (1416)
T ss_pred EEEEcCC-CcEEEEEEc-cchH-HHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccc
Confidence 9888844 444333221 1111 1111111111111111111111111 00000
Q ss_pred -EE---Eee-cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC-------cceEEEe--cccCcceEEEEEcCCCCE
Q 006497 275 -LE---SFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------TPQVEIH--NVHDNTVWDLAWHPIGYL 340 (643)
Q Consensus 275 -~~---~~~-~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~-------~~~~~~~--~~h~~~V~~l~~s~d~~~ 340 (643)
+. .+. .....++|++++. -+..|+.|...|.+.+|.-... ...+.+. ....+.|+.+.|.+-...
T Consensus 291 vLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~ 369 (1416)
T KOG3617|consen 291 VLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKST 369 (1416)
T ss_pred cccCCcchhhhcCCceEEEEEec-cceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccch
Confidence 00 010 1345689999998 6788999999999999954222 1122221 123457888999875444
Q ss_pred EEEE
Q 006497 341 LCSG 344 (643)
Q Consensus 341 L~sg 344 (643)
++.-
T Consensus 370 ~avn 373 (1416)
T KOG3617|consen 370 AAVN 373 (1416)
T ss_pred hhhh
Confidence 4333
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00024 Score=73.41 Aligned_cols=275 Identities=13% Similarity=0.115 Sum_probs=136.5
Q ss_pred EEEEcCCCCEEEEEEC-C--CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec
Q 006497 77 RVLWTPTGRRLITGSQ-S--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 77 ~i~~spdg~~L~tgs~-d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~ 153 (643)
.=+|..||+.|+.++. | ..+.+.|+++++..+...+-........++++++.|+-...+..|+-.|+++.+....+.
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 3467889977776654 4 457777999987666555332333356677888887766666789999999988777776
Q ss_pred CCCCCeEEEEEe--cCCCEEEEEeC----------------------CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCC
Q 006497 154 AHKESVRDLSFC--RTDLKFCSCSD----------------------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT 209 (643)
Q Consensus 154 ~~~~~I~~l~~s--~d~~~l~s~s~----------------------dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~ 209 (643)
.....+-...|. .|+.+++..-. ...|...|+.+++....+. ....+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 666666555553 45555443211 2346666788776554444 5567888999996
Q ss_pred CCEEEEEECCC-----cEEEEECCC-CceeEEeccC--CCcEEEEEEcCCCCEEEEEE-----CCCcEEEEECCCCeEEE
Q 006497 210 KSLLVSGGKDS-----LVKLWDAKS-GRELCSFHGH--KNMVLCVKWNQNGNWVLTAS-----KDQIIKLYDIRAMKELE 276 (643)
Q Consensus 210 ~~~l~sgs~dg-----~I~iwD~~~-~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s-----~dg~I~iwd~~~~~~~~ 276 (643)
...+++-|.+| .-|||-+++ +...+.+..+ ...+..=-|.+||..|..-+ .+..|.-+|..+++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 65555444333 135665543 3333333322 23355557889998776533 24467778888876543
Q ss_pred EeecCCCCeEEEEEecCCCCEEEEEeCCC----------------cEEEEECCCCcceEEEecccC---------cc--e
Q 006497 277 SFRGHRKDVTALAWHPFHEEYFVSGSLDG----------------SIFHWLVGHETPQVEIHNVHD---------NT--V 329 (643)
Q Consensus 277 ~~~~~~~~I~~l~~sp~~~~~l~sgs~dg----------------~I~iwd~~~~~~~~~~~~~h~---------~~--V 329 (643)
.... .....+..++ ++++++.-+.|. .|+++++....... +..|. .. =
T Consensus 279 ~~~~--p~~~H~~ss~-Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~--l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 279 LMEM--PWCSHFMSSP-DGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK--LARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEE---SEEEEEE-T-TSSEEEEEE-------------------EEEEEETTTTEEEE--EEE-------BTTBSSTT-
T ss_pred EEeC--CceeeeEEcC-CCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee--eeeccCcceeecCCCccCC
Confidence 3221 2333444455 667776544432 35556665443211 11121 11 1
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEecCC
Q 006497 330 WDLAWHPIGYLLC-SGSNDHTTKFWCRNR 357 (643)
Q Consensus 330 ~~l~~s~d~~~L~-sgs~Dg~V~iWd~~~ 357 (643)
-...|+||+++|+ ++..+|...||-++-
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY~v~i 382 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVYLVEI 382 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEEEEE-
T ss_pred CCCccCCCCCEEEEECCCCCCccEEEEeC
Confidence 3578999987765 555688888876643
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.8e-05 Score=81.42 Aligned_cols=207 Identities=14% Similarity=0.173 Sum_probs=123.7
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCce-------------------------------------------EEEE
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-------------------------------------------EMIL 110 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~-------------------------------------------~~~l 110 (643)
.|++|.|+.+..-|+++..+|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 589999999999999999999999985321100 1112
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEee--c------CCCCCeEEEEEec-----CC---CEEEEE
Q 006497 111 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--S------AHKESVRDLSFCR-----TD---LKFCSC 174 (643)
Q Consensus 111 ~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~--~------~~~~~I~~l~~s~-----d~---~~l~s~ 174 (643)
+...+.|++++.+ |=.++++|..+|.+.|.|++...++... . .....|+++.|.- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3346789999987 5569999999999999999877766542 1 2334678888862 22 347888
Q ss_pred eCCCcEEEEECC--C-Cee----eeEeeccCCCeEEEE-EcCC-----------------C---CEEEEEECCCcEEEEE
Q 006497 175 SDDTTVKVWDFA--R-CQE----ERSLTGHGWDVKSVD-WHPT-----------------K---SLLVSGGKDSLVKLWD 226 (643)
Q Consensus 175 s~dg~I~iwdl~--~-~~~----~~~~~~~~~~V~~l~-~sp~-----------------~---~~l~sgs~dg~I~iwD 226 (643)
++.|.+.+|.+. . +.. ......+.+.|..|. ++.+ + .-+++...+..|+++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999874 1 111 111223455565554 3222 0 2244445567899999
Q ss_pred CCCCceeEEeccCCCcEEEEEEc-----CCCCEEEEEECCCcEEEEECCCCeEEEEeecC
Q 006497 227 AKSGRELCSFHGHKNMVLCVKWN-----QNGNWVLTASKDQIIKLYDIRAMKELESFRGH 281 (643)
Q Consensus 227 ~~~~~~~~~~~~~~~~i~~l~~s-----p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 281 (643)
.-+.+...+..........+++- ..+..|++-..+|.|++|.+-..+.+..+...
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-S
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCC
Confidence 98887766655332233344442 25667888899999999999999988887753
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-05 Score=82.47 Aligned_cols=222 Identities=17% Similarity=0.209 Sum_probs=122.0
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 149 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~ 149 (643)
...-....+.++|+|+++++ +.||...||.....+.... +.-..++|... +.+|+-..+.+|.|+.--..+..
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecC-ccEEEEECCCeEEEEEcCccccc
Confidence 34455889999999999888 4578888988554443322 33456788874 55777777889999743222221
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 150 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS 229 (643)
Q Consensus 150 ~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~ 229 (643)
..+.. ...+..|-. |..|+..+.+ .|.+||+++++.++.+... .|..+.|++++++++..+.+ .+.|++.+.
T Consensus 103 k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp ------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 12211 123444433 7767666544 8999999999999888743 38999999999999998865 588877553
Q ss_pred C-----------ceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEE
Q 006497 230 G-----------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 230 ~-----------~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l 298 (643)
. ..+..+......|.+.+|..| .++..+.. .|+. +..++. ..+..-...+.-+.+.+ ..+.+
T Consensus 175 ~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~-~~~~l 247 (443)
T PF04053_consen 175 EAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLP-KENRL 247 (443)
T ss_dssp HHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEET-TTTEE
T ss_pred hhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEc-cCCEE
Confidence 2 133344333567889999765 55555444 6666 333332 22232345666666766 56777
Q ss_pred EEEeCCCcEEEEECC
Q 006497 299 VSGSLDGSIFHWLVG 313 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~ 313 (643)
+....|+.|..+.++
T Consensus 248 y~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 248 YLIDRDGNVISYELD 262 (443)
T ss_dssp EEE-TT--EEEEE--
T ss_pred EEEECCCCEEEEEEC
Confidence 777888888777664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00027 Score=78.29 Aligned_cols=189 Identities=10% Similarity=0.050 Sum_probs=120.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCC-CCEE---E-------EEEcCCCCEEEEEeCCCcEEEEECCCCceEEee
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIR---S-------MVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 152 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~---~-------l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~ 152 (643)
+..|++++.++.|+-+|.++++.+-.+.... ..+. + +++ .+..|++++.|+.|.-.|.++++.+-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567778888899999999998877655321 1111 1 122 2356778888999999999999987665
Q ss_pred cCCC----CCeEEEEEecCCCEEEEEe------CCCcEEEEECCCCeeeeEeeccCC-----------------------
Q 006497 153 SAHK----ESVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHGW----------------------- 199 (643)
Q Consensus 153 ~~~~----~~I~~l~~s~d~~~l~s~s------~dg~I~iwdl~~~~~~~~~~~~~~----------------------- 199 (643)
.... ..+.+--..-++ .++++. .+|.|..+|.++++.+..+.....
T Consensus 147 ~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~ 225 (527)
T TIGR03075 147 KNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG 225 (527)
T ss_pred ccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence 4211 112211111144 444443 268999999999887765432110
Q ss_pred --------Ce-EEEEEcCCCCEEEEEECC-----C-----------cEEEEECCCCceeEEeccCCCcE---------EE
Q 006497 200 --------DV-KSVDWHPTKSLLVSGGKD-----S-----------LVKLWDAKSGRELCSFHGHKNMV---------LC 245 (643)
Q Consensus 200 --------~V-~~l~~sp~~~~l~sgs~d-----g-----------~I~iwD~~~~~~~~~~~~~~~~i---------~~ 245 (643)
.+ ..++++++.++|+.+..+ + .|.-.|+++++....++.....+ .-
T Consensus 226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l 305 (527)
T TIGR03075 226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL 305 (527)
T ss_pred CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence 11 134667767777776522 2 57778999999887775422221 22
Q ss_pred EEEcCCCC---EEEEEECCCcEEEEECCCCeEE
Q 006497 246 VKWNQNGN---WVLTASKDQIIKLYDIRAMKEL 275 (643)
Q Consensus 246 l~~sp~g~---~l~s~s~dg~I~iwd~~~~~~~ 275 (643)
+.+..+|+ .|+.+..+|.+.+.|.++++.+
T Consensus 306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 306 FDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 23334665 7889999999999999999886
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00059 Score=72.89 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=81.1
Q ss_pred CCeEEEEEcC-CCCEEEEE----ECCCc----EEEEECCCCceeE--E-eccCCCcEEEEEEcCCCCEEEEEECCCcEEE
Q 006497 199 WDVKSVDWHP-TKSLLVSG----GKDSL----VKLWDAKSGRELC--S-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 266 (643)
Q Consensus 199 ~~V~~l~~sp-~~~~l~sg----s~dg~----I~iwD~~~~~~~~--~-~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i 266 (643)
....++.|+- +...+.+. +.+|. ..+|++...+..+ . --...+.|.|++++++.+.|+.|+.||.|.+
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIIL 285 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEE
Confidence 3445677775 33344443 23443 3567765443211 1 1236678999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 006497 267 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 267 wd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
||...+... +....-..+.++|+| ++.+|++|+..|.+.+||+.-.
T Consensus 286 yD~~~~~t~--~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 286 YDTTRGVTL--LAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCeee--eeeecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 998765333 333456688999999 8999999999999999998543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00011 Score=77.52 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=138.5
Q ss_pred cCCCCEEEEEe---------CCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 123 SHNDNWMVSGD---------DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 123 s~~~~~L~sg~---------~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
|+|+++++... ..+.+.|||+++++....... ...+....|+|+++.|+... ++.|+++++.++...+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 45666666532 236789999999776655433 67889999999999988876 67899999877644432
Q ss_pred eecc-----------------CCCeEEEEEcCCCCEEEEEECCC-c----------------------------------
Q 006497 194 LTGH-----------------GWDVKSVDWHPTKSLLVSGGKDS-L---------------------------------- 221 (643)
Q Consensus 194 ~~~~-----------------~~~V~~l~~sp~~~~l~sgs~dg-~---------------------------------- 221 (643)
.... -+.-..+.|+||+++|+....|. .
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 2211 12235788999999888764331 1
Q ss_pred -EEEEECCCCceeE-E-e---ccCCCcEEEEEEcCCCCEEEEEE--CCC---cEEEEECCCCeEEEEee-cCCCC---eE
Q 006497 222 -VKLWDAKSGRELC-S-F---HGHKNMVLCVKWNQNGNWVLTAS--KDQ---IIKLYDIRAMKELESFR-GHRKD---VT 286 (643)
Q Consensus 222 -I~iwD~~~~~~~~-~-~---~~~~~~i~~l~~sp~g~~l~s~s--~dg---~I~iwd~~~~~~~~~~~-~~~~~---I~ 286 (643)
|.|+|+++++... . . ......+..+.|.++++.|++.- .+. .+.++|..+++....++ ..... ..
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 3445555544321 1 1 12344578899999888444333 222 57777887655433222 12222 23
Q ss_pred EEEEe-cCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEE-EEEcCCCCEEE-EEECC--CeEEEEecCCC
Q 006497 287 ALAWH-PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD-LAWHPIGYLLC-SGSND--HTTKFWCRNRP 358 (643)
Q Consensus 287 ~l~~s-p~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~s~d~~~L~-sgs~D--g~V~iWd~~~~ 358 (643)
.+.+. +++..+|.....||.-.||-++........+....-.|+. +.|+.+++.|+ ++..+ ..-.+|.++..
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 55554 6567777777788877777665554444455444556755 67888876665 44432 45667766554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00062 Score=73.63 Aligned_cols=240 Identities=13% Similarity=0.105 Sum_probs=132.6
Q ss_pred CeEEEEEcCCCCEEEEE-ECCC----cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCC-----------c
Q 006497 74 SINRVLWTPTGRRLITG-SQSG----EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG-----------A 137 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tg-s~dg----~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg-----------~ 137 (643)
.+..+++++|+++||.+ +..| .|+|+|+++++.+...-.. .....+.|..+++.|+....+. .
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 44568899999998866 3334 4999999999765532111 1122399999988776665433 3
Q ss_pred EEEEECCCCceE--EeecCCCC-C-eEEEEEecCCCEEEEEeC---C-CcEEEEECCCC----eeeeEeeccCCCe-EEE
Q 006497 138 IKYWQNNMNNVK--ANKSAHKE-S-VRDLSFCRTDLKFCSCSD---D-TTVKVWDFARC----QEERSLTGHGWDV-KSV 204 (643)
Q Consensus 138 V~iwd~~~~~~~--~~~~~~~~-~-I~~l~~s~d~~~l~s~s~---d-g~I~iwdl~~~----~~~~~~~~~~~~V-~~l 204 (643)
|++|++.+.... ..+..... . ...+..+.|+++|+.... + ..|++.|+... .....+......+ ..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 778887765432 33333222 2 678889999998775432 2 45888888764 2334443333334 344
Q ss_pred EEcCCCCEEEEEEC---CCcEEEEECCCCce---eEEeccCCC--cEEEEEEcCCCCEEEEEE-CCC--cEEEEECCCCe
Q 006497 205 DWHPTKSLLVSGGK---DSLVKLWDAKSGRE---LCSFHGHKN--MVLCVKWNQNGNWVLTAS-KDQ--IIKLYDIRAMK 273 (643)
Q Consensus 205 ~~sp~~~~l~sgs~---dg~I~iwD~~~~~~---~~~~~~~~~--~i~~l~~sp~g~~l~s~s-~dg--~I~iwd~~~~~ 273 (643)
... .+.+++.... ++.|...++.+... ...+..+.. .+..+.. .+++|+... .++ .|+++|+..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 444 3444444432 35677788886652 224444444 3555554 345555443 443 68899998344
Q ss_pred EEEEeec-CCCCeEEEEEecCCCCEEEEEeCC---CcEEEEECCCCcc
Q 006497 274 ELESFRG-HRKDVTALAWHPFHEEYFVSGSLD---GSIFHWLVGHETP 317 (643)
Q Consensus 274 ~~~~~~~-~~~~I~~l~~sp~~~~~l~sgs~d---g~I~iwd~~~~~~ 317 (643)
....+.. ..+.|..+........++++.+.- .+|+.||+.+++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 4444433 334455555555344444444322 4677778766554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-05 Score=84.35 Aligned_cols=136 Identities=11% Similarity=0.198 Sum_probs=97.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec-CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee
Q 006497 114 DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 192 (643)
Q Consensus 114 ~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~-~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~ 192 (643)
...|.--++...+++|+.|+.-|.|++|+-..++...... +....+..+.++.++.++|.++..|.|.|+-+.....-.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445445566678999999999999999988776554433 244455666777788888889999999999886532211
Q ss_pred -----Ee-eccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCC----ceeEEeccCCCcEEEEEEc
Q 006497 193 -----SL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG----RELCSFHGHKNMVLCVKWN 249 (643)
Q Consensus 193 -----~~-~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~----~~~~~~~~~~~~i~~l~~s 249 (643)
.. +.|...|++++|++++..+++|...|+|.+-.+++. -....+....+.|..|.+.
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 236788999999999999999999999999888762 1122333455677777665
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0004 Score=76.95 Aligned_cols=236 Identities=8% Similarity=0.050 Sum_probs=143.0
Q ss_pred CEEEEEECCCcEEEEeCCCCceEEEEccCC----CCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceEEeecC
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANKSA 154 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~s~~~~~L~sg~~------dg~V~iwd~~~~~~~~~~~~ 154 (643)
..|++++.|+.|.-.|.++++.+-...... ..+++--..-++ .|+++.. +|.|.-+|.++++.+-.+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 467888889999999999999876654311 112211111133 4555432 68899999999887765432
Q ss_pred CCC-------------------------------CeE-EEEEecCCCEEEEEeC-----CC-----------cEEEEECC
Q 006497 155 HKE-------------------------------SVR-DLSFCRTDLKFCSCSD-----DT-----------TVKVWDFA 186 (643)
Q Consensus 155 ~~~-------------------------------~I~-~l~~s~d~~~l~s~s~-----dg-----------~I~iwdl~ 186 (643)
... .+. .+++.++..+|+.+.. ++ .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 111 111 2355555555655541 12 67778899
Q ss_pred CCeeeeEeeccCCCeE---------EEEEcCCCC---EEEEEECCCcEEEEECCCCceeEEec--c----------CC--
Q 006497 187 RCQEERSLTGHGWDVK---------SVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFH--G----------HK-- 240 (643)
Q Consensus 187 ~~~~~~~~~~~~~~V~---------~l~~sp~~~---~l~sgs~dg~I~iwD~~~~~~~~~~~--~----------~~-- 240 (643)
+++.+-.+......+. -+.+..+++ .++.+.++|.+++.|.++++.+...+ . ..
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~ 359 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGR 359 (527)
T ss_pred cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCC
Confidence 9988877764322222 223334565 78899999999999999998762210 0 00
Q ss_pred ----------------CcE-----------EEEEEcCCCCEEEEEECC--------------------------------
Q 006497 241 ----------------NMV-----------LCVKWNQNGNWVLTASKD-------------------------------- 261 (643)
Q Consensus 241 ----------------~~i-----------~~l~~sp~g~~l~s~s~d-------------------------------- 261 (643)
..+ ..++++|+..++++...+
T Consensus 360 p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~ 439 (527)
T TIGR03075 360 PIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDH 439 (527)
T ss_pred CccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCC
Confidence 000 114556655555443322
Q ss_pred -CcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEec
Q 006497 262 -QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 262 -g~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 323 (643)
+.|.-+|+.+++.+.+.............. .+.+++.++.||.++.+|.++++.+.+...
T Consensus 440 ~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 440 MGSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred ceeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 457778888888877665332222222122 355777788899999999999998887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00055 Score=73.14 Aligned_cols=112 Identities=21% Similarity=0.208 Sum_probs=78.9
Q ss_pred cEEEEEEcC-CCCEEEEE----ECCCc----EEEEECCCCe--EEEEee-cCCCCeEEEEEecCCCCEEEEEeCCCcEEE
Q 006497 242 MVLCVKWNQ-NGNWVLTA----SKDQI----IKLYDIRAMK--ELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 242 ~i~~l~~sp-~g~~l~s~----s~dg~----I~iwd~~~~~--~~~~~~-~~~~~I~~l~~sp~~~~~l~sgs~dg~I~i 309 (643)
...++.|+- +.+.+.+. +.+|. .++|++...+ .+.... .....|.++++++ +++.|+.|+.||.|.+
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSiiL 285 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSIIL 285 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeEEE
Confidence 346677776 34444443 23332 3556664333 222111 3667899999999 8999999999999999
Q ss_pred EECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 310 wd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
||......... ...-..+.++|+++|.+|++|+..|.+.+||+.-
T Consensus 286 yD~~~~~t~~~---ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 286 YDTTRGVTLLA---KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEcCCCeeeee---eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 99866543322 2345678999999999999999999999999853
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-06 Score=58.96 Aligned_cols=38 Identities=29% Similarity=0.719 Sum_probs=36.3
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
+.+.++.+|.+.|++|+|++++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.5e-06 Score=58.35 Aligned_cols=37 Identities=30% Similarity=0.721 Sum_probs=34.7
Q ss_pred EEEeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN 100 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd 100 (643)
...++.+|.+.|++|+|++++++|++++.|+.|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3467899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.9e-05 Score=79.41 Aligned_cols=176 Identities=17% Similarity=0.136 Sum_probs=112.1
Q ss_pred cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEE---eCC-CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG---DDG-GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg---~~d-g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~ 170 (643)
.+.+-|.+ +.....+......+..-+|++++..++.. ... ..+.++|+++++...... ....-..-+|++|+++
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~ 251 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSK 251 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCE
Confidence 34444444 44555555556677788999998766543 222 358999999887665553 3444556789999988
Q ss_pred EEEEe-CCC--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC-C--cEEEEECCCCceeEEeccCCCcEE
Q 006497 171 FCSCS-DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-S--LVKLWDAKSGRELCSFHGHKNMVL 244 (643)
Q Consensus 171 l~s~s-~dg--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d-g--~I~iwD~~~~~~~~~~~~~~~~i~ 244 (643)
|+.+. .|+ .|+++|+......+ +....+.-..=.|+|||+.|+..++. | .|.++|++.... ..+......-.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 76654 455 56777887765333 44333333467899999988776543 3 477777776554 33332222223
Q ss_pred EEEEcCCCCEEEEEECC-Cc--EEEEECCCCeE
Q 006497 245 CVKWNQNGNWVLTASKD-QI--IKLYDIRAMKE 274 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~d-g~--I~iwd~~~~~~ 274 (643)
+-.|++||++|+..+.+ |. |.+.|+.++..
T Consensus 330 ~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 330 NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred CccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 78899999999887743 43 66666665554
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0009 Score=66.12 Aligned_cols=200 Identities=10% Similarity=0.150 Sum_probs=115.2
Q ss_pred EEeecCCCCCeEEEEEcCCCCEE-EEEECCCcEEEEeCCCCceEEEEccC-CCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAH-DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L-~tgs~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
.+.+.+-...|..|+|+++.+.| ++....+.|..++. +++.++.+... .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 46677777789999999986655 55566778888886 46777776543 36688899987777777666689999988
Q ss_pred CCCCc----e--EEee-----cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC---CeeeeEe--------eccCCC
Q 006497 143 NNMNN----V--KANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR---CQEERSL--------TGHGWD 200 (643)
Q Consensus 143 ~~~~~----~--~~~~-----~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~---~~~~~~~--------~~~~~~ 200 (643)
+.... . ...+ ..++..+..|+|.+.++.|+++-+..-..||.+.. ...+... ......
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 73221 1 1111 13456689999999988888887777666766643 1111111 123346
Q ss_pred eEEEEEcCCC-CEEEEEECCCcEEEEECCCCceeEEeccCC---------CcEEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 201 VKSVDWHPTK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHK---------NMVLCVKWNQNGNWVLTASKDQIIKLY 267 (643)
Q Consensus 201 V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~---------~~i~~l~~sp~g~~l~s~s~dg~I~iw 267 (643)
+.++++++.. ++++....+..|.++| .+|+.+..+.-.. .....|+|.++|+ |+..++-+..++|
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC-EEEEcCCceEEEe
Confidence 8899999865 4666667778888999 5677665543222 2468899999886 4444555555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.002 Score=68.71 Aligned_cols=259 Identities=12% Similarity=0.090 Sum_probs=164.2
Q ss_pred EEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEE-EE
Q 006497 96 FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF-CS 173 (643)
Q Consensus 96 I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~-~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l-~s 173 (643)
+.+++..+.+....+..+. ....+...+++..+.+.. ....+.+.+............-...-..+++++++..+ ++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~ 91 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVT 91 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEe
Confidence 5666655555444444333 455677777775444433 22245555544222222111111344567888888754 44
Q ss_pred EeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC---CCcEEEEECCCCceeEEeccCCCcEEEEEEcC
Q 006497 174 CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK---DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250 (643)
Q Consensus 174 ~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~---dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp 250 (643)
...++.|.+.|.+..+........ .....++++++++.+.++.. ++++.+.|..+.+.+.+....... ..+++++
T Consensus 92 ~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 92 TGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred cCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 455689999998777666655533 26678999999988877765 688999999988888775433334 8899999
Q ss_pred CCCEEEEEE-CCCcEEEEECCCCeEEE-E---eecCCCCeEEEEEecCCCCEEEEEeCC--CcEEEEECCCCcceEEEec
Q 006497 251 NGNWVLTAS-KDQIIKLYDIRAMKELE-S---FRGHRKDVTALAWHPFHEEYFVSGSLD--GSIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 251 ~g~~l~s~s-~dg~I~iwd~~~~~~~~-~---~~~~~~~I~~l~~sp~~~~~l~sgs~d--g~I~iwd~~~~~~~~~~~~ 323 (643)
+++.++++. .++.|.+.|........ . .......-..+.+++++.+..++...+ +.+...|............
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 999777666 78899999977665553 1 111223446788888444455554444 5888888876655443222
Q ss_pred ccCcceEEEEEcCCCCEEEEEECC-CeEEEEecCC
Q 006497 324 VHDNTVWDLAWHPIGYLLCSGSND-HTTKFWCRNR 357 (643)
Q Consensus 324 ~h~~~V~~l~~s~d~~~L~sgs~D-g~V~iWd~~~ 357 (643)
........+..+++++.+.+.... +.|.+-|...
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 111145678899999998887544 7788877654
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00093 Score=67.86 Aligned_cols=223 Identities=12% Similarity=0.114 Sum_probs=129.6
Q ss_pred CCCCEEEEEECCCcEEEEeCC-CCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe---------
Q 006497 82 PTGRRLITGSQSGEFTLWNGQ-SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN--------- 151 (643)
Q Consensus 82 pdg~~L~tgs~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~--------- 151 (643)
..++.|++|+++| |.+++.. ..+.....+ ...|..+...++-+.|++-+ |+.|++++++.-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4578899999998 8999983 333333332 33499999998877766654 49999999765443331
Q ss_pred -----ecCCCCCeEEEE--EecCCCEEEEEeCCCcEEEEECCCC-----eeeeEeeccCCCeEEEEEcCCCCEEEEEECC
Q 006497 152 -----KSAHKESVRDLS--FCRTDLKFCSCSDDTTVKVWDFARC-----QEERSLTGHGWDVKSVDWHPTKSLLVSGGKD 219 (643)
Q Consensus 152 -----~~~~~~~I~~l~--~s~d~~~l~s~s~dg~I~iwdl~~~-----~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d 219 (643)
.......+..++ -...+...+++....+|.||..... +..+.+. ....+.+++|. ++.|+++..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 111222344443 1123333333444558888887552 3444444 34678999998 6678877764
Q ss_pred CcEEEEECCCCceeEEeccCC------------CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EeecCCCCe
Q 006497 220 SLVKLWDAKSGRELCSFHGHK------------NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGHRKDV 285 (643)
Q Consensus 220 g~I~iwD~~~~~~~~~~~~~~------------~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~~I 285 (643)
+ ..+.|+.++.....+.... ..+..+.+. ++.+|++. |..-.+.|. .|+..+ .+. -....
T Consensus 158 ~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~-W~~~p 231 (275)
T PF00780_consen 158 G-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ-WSSAP 231 (275)
T ss_pred c-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE-cCCch
Confidence 4 8899999765544332111 223344443 34555543 333334443 344333 222 23456
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEE
Q 006497 286 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 286 ~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 321 (643)
.++++. ..+|++... +.|.||++.+......+
T Consensus 232 ~~~~~~---~pyli~~~~-~~iEV~~~~~~~lvQ~i 263 (275)
T PF00780_consen 232 QSVAYS---SPYLIAFSS-NSIEVRSLETGELVQTI 263 (275)
T ss_pred hEEEEE---CCEEEEECC-CEEEEEECcCCcEEEEE
Confidence 666664 356666555 45999999888654443
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00019 Score=76.95 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=122.0
Q ss_pred EEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEe---CC-CcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEE
Q 006497 138 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS---DD-TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 138 V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s---~d-g~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l 213 (643)
+.+-|.+ +.....+......+..-+|++++..++... .. ..+.++|+++++....+. ....-..-+|+||+++|
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l 252 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKL 252 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEE
Confidence 3444444 444455555566777788999987765442 22 359999998887666655 33444577899999977
Q ss_pred EEEE-CCCc--EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC-CC--cEEEEECCCCeEEEEeecCCCCeEE
Q 006497 214 VSGG-KDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK-DQ--IIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 214 ~sgs-~dg~--I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~-dg--~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
+.+. .||. |+++|+.++. +..+....+.-+.-.|+|||++|+..+. .| .|.++|++.... ..+......-..
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~ 330 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSN 330 (425)
T ss_pred EEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcC
Confidence 6654 4554 7777888766 4445544444457789999999887764 34 466667665443 333333333337
Q ss_pred EEEecCCCCEEEEEeC-CCc--EEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEEC
Q 006497 288 LAWHPFHEEYFVSGSL-DGS--IFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 346 (643)
Q Consensus 288 l~~sp~~~~~l~sgs~-dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~ 346 (643)
-.|++ ++++|+..+. +|. |.+.|+.+... ..... +......-+|.++++.|+..+.
T Consensus 331 p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt-~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 331 PVWSP-DGDKIVFESSSGGQWDIDKNDLASGGK-IRILT-STYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred ccCCC-CCCEEEEEeccCCceeeEEeccCCCCc-EEEcc-ccccCCCCCcCCCCceEEEecc
Confidence 88999 5666655553 455 55666654443 22221 2333345567777766655443
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00074 Score=64.81 Aligned_cols=145 Identities=7% Similarity=-0.079 Sum_probs=103.5
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEE
Q 006497 126 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD 205 (643)
Q Consensus 126 ~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~ 205 (643)
..+++.|+..+.+.-.|..+++++.+. .....|.+-+.- -++.++.++..|.+++.+.++++....+...+.--....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~-ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEA-ILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeeh-hhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE
Confidence 457778888888888898888877653 334455554443 456799999999999999999987777764432222334
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 006497 206 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM 272 (643)
Q Consensus 206 ~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~ 272 (643)
.+.++.+|.+++.|++.+..|.++..++.+.+...+...+-++.+-...|+++...|.|.-...+..
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 5678999999999999999999999999887755555555566663344555555666555554443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00043 Score=73.44 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=133.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE-------------------------------------------Eee
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-------------------------------------------ANK 152 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~-------------------------------------------~~~ 152 (643)
.|+++.|+.+..-|+++...|.|.||.+..++.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5888999999889999999999999864221100 011
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee--c------cCCCeEEEEEcC-----CC---CEEEEE
Q 006497 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--G------HGWDVKSVDWHP-----TK---SLLVSG 216 (643)
Q Consensus 153 ~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~--~------~~~~V~~l~~sp-----~~---~~l~sg 216 (643)
....+.|++++.+ |-..+|+|..+|.+.|.|++....+..-. . ....|+++.|.- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346789999987 55589999999999999998776665422 1 234577888752 33 378899
Q ss_pred ECCCcEEEEECC--C-Cce----eEEeccCCCcEEEEE-EcCC-C-------------------CEEEEEECCCcEEEEE
Q 006497 217 GKDSLVKLWDAK--S-GRE----LCSFHGHKNMVLCVK-WNQN-G-------------------NWVLTASKDQIIKLYD 268 (643)
Q Consensus 217 s~dg~I~iwD~~--~-~~~----~~~~~~~~~~i~~l~-~sp~-g-------------------~~l~s~s~dg~I~iwd 268 (643)
+..|.+.+|.+. . +.. ......+.+.|..|. ++.+ | +-+++...+..++|+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 999999999875 1 111 111223555665554 3221 0 1234444577899999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEe----cCCCCEEEEEeCCCcEEEEECCCCcceEEEecc---cCcceEEEEEcCCCCEE
Q 006497 269 IRAMKELESFRGHRKDVTALAWH----PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV---HDNTVWDLAWHPIGYLL 341 (643)
Q Consensus 269 ~~~~~~~~~~~~~~~~I~~l~~s----p~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~d~~~L 341 (643)
.-+.+..............+++- ...+..|++-..+|.|++|.+-.-+.+...... ....+...+++.+|+.+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 98877766554222233334442 125678888999999999999777666554432 12234566778888876
Q ss_pred EEEECCCeEEEEec
Q 006497 342 CSGSNDHTTKFWCR 355 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~ 355 (643)
+-.+ ...+.+|.+
T Consensus 322 ~~~g-psE~~l~sv 334 (395)
T PF08596_consen 322 YWTG-PSEIQLFSV 334 (395)
T ss_dssp EE-S-SSEEEEEEE
T ss_pred EEeC-cccEEEEEE
Confidence 6654 344444444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00087 Score=68.56 Aligned_cols=216 Identities=11% Similarity=0.078 Sum_probs=135.0
Q ss_pred EEEcCCCCEEE-EEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeec---
Q 006497 78 VLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--- 153 (643)
Q Consensus 78 i~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~--- 153 (643)
-.|.++...|+ +--..+.|.-|+..+++.. .+. +.+.+.++....++..|+++.. | +.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~d~~g~Lv~~~~-g-~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALIDAGGRLIACEH-G-VRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceeecCCCeEEEEcc-c-cEEEeccCCceeEEecccc
Confidence 35777777554 4445778999988766433 232 3444566666555556665543 3 6666766555533221
Q ss_pred --CCCCCeEEEEEecCCCEEEEEeC-----------CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC-
Q 006497 154 --AHKESVRDLSFCRTDLKFCSCSD-----------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD- 219 (643)
Q Consensus 154 --~~~~~I~~l~~s~d~~~l~s~s~-----------dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d- 219 (643)
......+++.+.+++.+.++.-. -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+...
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 11245667888888887665433 133444453 445555555445556799999999888777654
Q ss_pred CcEEEEECCC--C----ce-eEEeccCCCcEEEEEEcCCCCEEEEEECCC-cEEEEECCCCeEEEEeecCCCCeEEEEEe
Q 006497 220 SLVKLWDAKS--G----RE-LCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-IIKLYDIRAMKELESFRGHRKDVTALAWH 291 (643)
Q Consensus 220 g~I~iwD~~~--~----~~-~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg-~I~iwd~~~~~~~~~~~~~~~~I~~l~~s 291 (643)
+.|.-|++.. + +. ...+....+..-.++...+|++.+++..+| .|.+|+.+ ++.+..++.....+++++|-
T Consensus 185 ~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 185 NRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence 7788887752 1 11 122223445566788888888775555544 89999988 99999999887889999986
Q ss_pred cCCCCEEE
Q 006497 292 PFHEEYFV 299 (643)
Q Consensus 292 p~~~~~l~ 299 (643)
-.+.+.|+
T Consensus 264 G~~~~~L~ 271 (307)
T COG3386 264 GPDLNTLY 271 (307)
T ss_pred CCCcCEEE
Confidence 42334333
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00037 Score=72.60 Aligned_cols=211 Identities=15% Similarity=0.205 Sum_probs=125.0
Q ss_pred CcEEEEeCCCCceEEEEccC-CCCEEEEEE---cCC----CCEEEEEeC----------CCcEEEEECCCC-----ceEE
Q 006497 94 GEFTLWNGQSFNFEMILQAH-DHAIRSMVW---SHN----DNWMVSGDD----------GGAIKYWQNNMN-----NVKA 150 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~~----~~~L~sg~~----------dg~V~iwd~~~~-----~~~~ 150 (643)
..|+|.|..+.+.+..+.-. ...+++++. ..+ ..+|++|+. .|.|.++++... ++..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 36888998888777665533 334555443 322 467777753 288999998874 2221
Q ss_pred e-ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eeeEee-ccCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 151 N-KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ-EERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 151 ~-~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~-~~~~~~-~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
. .....+.|++++-. ++ +|+++. ++.|.+|++...+ ...... .....+.++... +++|++|+....|.++..
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 1 13457889998877 33 344443 5899999997776 333222 123356666665 669999998888888754
Q ss_pred CC-CceeEEe--ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-------C--e--EEEEeecCCCCeEEE---EE
Q 006497 228 KS-GRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-------M--K--ELESFRGHRKDVTAL---AW 290 (643)
Q Consensus 228 ~~-~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-------~--~--~~~~~~~~~~~I~~l---~~ 290 (643)
+. .+.+..+ ......+++++|-.+++.++++..+|.|.++.... + + .+..+. ....|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEe
Confidence 43 2323333 22355688998886667999999999999998752 1 1 222333 23456666 33
Q ss_pred ecC--CC-----CEEEEEeCCCcEEEE
Q 006497 291 HPF--HE-----EYFVSGSLDGSIFHW 310 (643)
Q Consensus 291 sp~--~~-----~~l~sgs~dg~I~iw 310 (643)
.+. +. ..++.++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 331 12 247777788888733
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0016 Score=66.18 Aligned_cols=219 Identities=11% Similarity=0.050 Sum_probs=125.7
Q ss_pred CCCCEEEEEeCCCcEEEEECC-CCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe--------
Q 006497 124 HNDNWMVSGDDGGAIKYWQNN-MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-------- 194 (643)
Q Consensus 124 ~~~~~L~sg~~dg~V~iwd~~-~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~-------- 194 (643)
..++.|+.|+++| |.+++.. ..+..... ....|..+...++-+.|++-+ |+.|+++++.........
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 3578999999999 8899883 23333322 233499999998887777665 599999998654433311
Q ss_pred ------eccCCCeEEEE--EcCCCCEEEEEECCCcEEEEECCCC-----ceeEEeccCCCcEEEEEEcCCCCEEEEEECC
Q 006497 195 ------TGHGWDVKSVD--WHPTKSLLVSGGKDSLVKLWDAKSG-----RELCSFHGHKNMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 195 ------~~~~~~V~~l~--~sp~~~~l~sgs~dg~I~iwD~~~~-----~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d 261 (643)
......+..++ -...+...++.....+|.+|..... +..+++. ....+.+++|. ++.|+++..+
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~ 157 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK 157 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC
Confidence 11222344444 1123333333444458888877643 3445554 44678999998 5678777755
Q ss_pred CcEEEEECCCCeEEEEeecC------------CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcce
Q 006497 262 QIIKLYDIRAMKELESFRGH------------RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 329 (643)
Q Consensus 262 g~I~iwd~~~~~~~~~~~~~------------~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 329 (643)
...+.|+.++.....+... ...+..+... ++.+|++. |..-.+.|............ -....
T Consensus 158 -~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p 231 (275)
T PF00780_consen 158 -GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAP 231 (275)
T ss_pred -ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcCcccEEE-cCCch
Confidence 4888899876554333211 1233344443 34555543 33333444432221111111 13356
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 330 WDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 330 ~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
.++++. ..+|++.+. +.|.||++...
T Consensus 232 ~~~~~~--~pyli~~~~-~~iEV~~~~~~ 257 (275)
T PF00780_consen 232 QSVAYS--SPYLIAFSS-NSIEVRSLETG 257 (275)
T ss_pred hEEEEE--CCEEEEECC-CEEEEEECcCC
Confidence 667764 557777665 55999999664
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0031 Score=67.20 Aligned_cols=260 Identities=13% Similarity=0.053 Sum_probs=166.5
Q ss_pred CeEEEEEcCCCCEEEEEECC-CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceEEe
Q 006497 74 SINRVLWTPTGRRLITGSQS-GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNW-MVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~d-g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~-L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
....+.+.+++..+.+.... ..+.+.+............-...-..++.++.++. +++...+..|.+.|.++.++...
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 56677888888655544432 24555554422222211111133456778887774 44555568999999887777666
Q ss_pred ecCCCCCeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE-CCCcEEEEEC
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSD---DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDA 227 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~---dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs-~dg~I~iwD~ 227 (643)
...- ..-..++++++++.+.++.. ++++.+.|-.+.+........... ..++++++++.++++. .++.|.+.|.
T Consensus 112 ~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~ 189 (381)
T COG3391 112 IPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDT 189 (381)
T ss_pred eeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeC
Confidence 5332 26778999999988777655 689999998888887775543334 8899999999766665 7889999997
Q ss_pred CCCceeE-E---eccCCCcEEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEeecCCC-CeEEEEEecCCCCEEE
Q 006497 228 KSGRELC-S---FHGHKNMVLCVKWNQNGNWVLTASKD---QIIKLYDIRAMKELESFRGHRK-DVTALAWHPFHEEYFV 299 (643)
Q Consensus 228 ~~~~~~~-~---~~~~~~~i~~l~~sp~g~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~-~I~~l~~sp~~~~~l~ 299 (643)
+...... . ...-...-..+.++++++++.+.... +.+.+.|..++........... ....+.++| .+..+.
T Consensus 190 ~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p-~g~~~y 268 (381)
T COG3391 190 SGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDP-AGKAAY 268 (381)
T ss_pred CCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECC-CCCEEE
Confidence 7655442 1 11122334678899999977766544 5899999998877665222222 566788888 555555
Q ss_pred EE-eCCCcEEEEECCCCcceEEEecc--cCcceEEEEEcC
Q 006497 300 SG-SLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHP 336 (643)
Q Consensus 300 sg-s~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~ 336 (643)
+. +..+.+.+.|............. -...+..+++.+
T Consensus 269 v~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 269 VANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred EEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 55 45588888888665544433321 112345555544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0028 Score=68.61 Aligned_cols=239 Identities=13% Similarity=0.070 Sum_probs=132.1
Q ss_pred EEEEEEcCCCCEEEEE-eCCC----cEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCC-----------cE
Q 006497 117 IRSMVWSHNDNWMVSG-DDGG----AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-----------TV 180 (643)
Q Consensus 117 V~~l~~s~~~~~L~sg-~~dg----~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg-----------~I 180 (643)
+..+.+++|+++||.+ +..| .|+++|+++++.+..... ......+.|..|++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467889999988865 3334 499999999976653211 11223499999988876665433 38
Q ss_pred EEEECCCCeee--eEeeccCCC--eEEEEEcCCCCEEEEEECC----CcEEEEECCCC----ceeEEeccCCCcE-EEEE
Q 006497 181 KVWDFARCQEE--RSLTGHGWD--VKSVDWHPTKSLLVSGGKD----SLVKLWDAKSG----RELCSFHGHKNMV-LCVK 247 (643)
Q Consensus 181 ~iwdl~~~~~~--~~~~~~~~~--V~~l~~sp~~~~l~sgs~d----g~I~iwD~~~~----~~~~~~~~~~~~i-~~l~ 247 (643)
++|++.+.... ..+...... ...+.++.|+++|++.... ..|++.|+..+ .....+......+ ..+.
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888765433 444433322 5688899999987765432 34788888874 2333333333333 3444
Q ss_pred EcCCCCEEEEEE---CCCcEEEEECCCCeE---EEEeecCCC--CeEEEEEecCCCCEEEEEeCCC--cEEEEECCCCcc
Q 006497 248 WNQNGNWVLTAS---KDQIIKLYDIRAMKE---LESFRGHRK--DVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETP 317 (643)
Q Consensus 248 ~sp~g~~l~s~s---~dg~I~iwd~~~~~~---~~~~~~~~~--~I~~l~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~ 317 (643)
.. .+.+++... .++.|...++.+... ...+..+.. .+..+... ++.+++....++ .|+++++.....
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CCEEEEEEEECCccEEEEEECCCCcE
Confidence 43 334444333 235677778876552 224444554 35555544 456666666665 577888873333
Q ss_pred eEEEecccCcceEEEEEcCCCCEE-EEEEC---CCeEEEEecCCCC
Q 006497 318 QVEIHNVHDNTVWDLAWHPIGYLL-CSGSN---DHTTKFWCRNRPG 359 (643)
Q Consensus 318 ~~~~~~~h~~~V~~l~~s~d~~~L-~sgs~---Dg~V~iWd~~~~~ 359 (643)
...+...-.+.|..+....++..| ++.+. -++|..||+....
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred EeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 333333334456666655554433 33322 2456667765543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0013 Score=65.08 Aligned_cols=198 Identities=10% Similarity=0.195 Sum_probs=113.4
Q ss_pred EEccCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceEEeecCC-CCCeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 006497 109 ILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAH-KESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186 (643)
Q Consensus 109 ~l~~h~~~V~~l~~s~~~~-~L~sg~~dg~V~iwd~~~~~~~~~~~~~-~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~ 186 (643)
.+.+-...+..|+|+++.+ ++++....+.|..++.+ ++++..+... .+....|++..++.++++.-.++.+.++++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4445556799999999865 55566677888878864 6676666433 4678899998888766666568999999983
Q ss_pred CCe------eeeEee-----ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCC---CceeEEe--------ccCCCcEE
Q 006497 187 RCQ------EERSLT-----GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKS---GRELCSF--------HGHKNMVL 244 (643)
Q Consensus 187 ~~~------~~~~~~-----~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~---~~~~~~~--------~~~~~~i~ 244 (643)
... ....+. .+...+..|+|++.++.|+++-+..-..||.++. ...+... ......+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 321 111221 2345689999999988888887777667776653 2222111 11334578
Q ss_pred EEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEeecCC---------CCeEEEEEecCCCCEEEEEeCCCcEEEE
Q 006497 245 CVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHR---------KDVTALAWHPFHEEYFVSGSLDGSIFHW 310 (643)
Q Consensus 245 ~l~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~---------~~I~~l~~sp~~~~~l~sgs~dg~I~iw 310 (643)
++++++. +++++....+..|.++| .+++.+..+.... ..--.|+|.+ +++++++ ++-+..+++
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 9999985 45666666778899999 6677766665333 2456889987 5554444 445555443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0022 Score=68.85 Aligned_cols=207 Identities=9% Similarity=0.089 Sum_probs=111.0
Q ss_pred cEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe------eeeEeeccCCCeEEEEEcCCC
Q 006497 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ------EERSLTGHGWDVKSVDWHPTK 210 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~------~~~~~~~~~~~V~~l~~sp~~ 210 (643)
.|+||+.... .+..+.-..+.|.++.|..+. .|++...||.+++||+.... .+......+..+....+..+|
T Consensus 62 ~I~iys~sG~-ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECCCCC-EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 3677765433 333333333789999998754 56667789999999986433 111111111222222333344
Q ss_pred CEEEEEECCCcEEEEECCCCc-eeEEecc----------CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee
Q 006497 211 SLLVSGGKDSLVKLWDAKSGR-ELCSFHG----------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 211 ~~l~sgs~dg~I~iwD~~~~~-~~~~~~~----------~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
+++-..++.|++.+-.... ..+.+.. .........++.+....+....++.+.+.|....+. +
T Consensus 140 --ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i- 213 (410)
T PF04841_consen 140 --IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I- 213 (410)
T ss_pred --EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-
Confidence 3333445555544322211 1111110 000000123344444455555555566444332211 1
Q ss_pred cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 280 ~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
...+.+..+++|+ ++++||.-..+|.+.+.+.+-.+...++...-......+.|+-++..++.- +..|.+..
T Consensus 214 ~~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 214 DSDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred cCCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 1346899999999 889999999999999988766655555554445567788888665433333 34455544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0062 Score=68.64 Aligned_cols=188 Identities=13% Similarity=0.079 Sum_probs=122.1
Q ss_pred EEEEECCCCeeeeEeecc----CCCeEEEEEcCC-CCEEEEEE----------CCCcEEEEECCCCceeEEeccC--CCc
Q 006497 180 VKVWDFARCQEERSLTGH----GWDVKSVDWHPT-KSLLVSGG----------KDSLVKLWDAKSGRELCSFHGH--KNM 242 (643)
Q Consensus 180 I~iwdl~~~~~~~~~~~~----~~~V~~l~~sp~-~~~l~sgs----------~dg~I~iwD~~~~~~~~~~~~~--~~~ 242 (643)
++++|-++.+.+...+-. ...|.++.|..| +.++++|+ ..|.|.||.....+.+.....+ ++.
T Consensus 752 l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Ga 831 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGA 831 (1096)
T ss_pred EEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccc
Confidence 556665555444332211 123455568777 56777775 2477888887764444443322 344
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc--ceEE
Q 006497 243 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET--PQVE 320 (643)
Q Consensus 243 i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~--~~~~ 320 (643)
+.++..- +|++||. -+..|++|++.+.+.++.-..+...+..+...- .++.+++|+.=++|.+...+..+ ....
T Consensus 832 v~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 832 VYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred eeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 4444432 5555543 467899999999888887777888888888887 78999999888888777665444 3333
Q ss_pred EecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCCCCCccccccccCCCc
Q 006497 321 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQ 372 (643)
Q Consensus 321 ~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~~~~~~~~~ 372 (643)
....+..+.+++.+-.+. .++.+.++|.+.+-..+....+..++..++...
T Consensus 908 ArD~~p~Wmtaveil~~d-~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~ 958 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDD-TYLGAENSGNLFTVRKDSDATTDEERQILEEVG 958 (1096)
T ss_pred ehhhCccceeeEEEecCc-eEEeecccccEEEEEecCCCCchhhhhccccee
Confidence 344566788888877554 455667889999988877666655555555443
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0014 Score=74.41 Aligned_cols=143 Identities=13% Similarity=0.162 Sum_probs=99.0
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCceEEeecCCCCC-eEEEEEec-----CCCEEEEEeCCCcEEEEECCCCe--eeeE-e
Q 006497 125 NDNWMVSG-DDGGAIKYWQNNMNNVKANKSAHKES-VRDLSFCR-----TDLKFCSCSDDTTVKVWDFARCQ--EERS-L 194 (643)
Q Consensus 125 ~~~~L~sg-~~dg~V~iwd~~~~~~~~~~~~~~~~-I~~l~~s~-----d~~~l~s~s~dg~I~iwdl~~~~--~~~~-~ 194 (643)
+.++|+.- .....|+-.|++.++++..+..+... |.+++-.. +....+.|-.++.|..||.+-.. .+.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444443 34578999999999999999877754 55554321 12335667778999999986532 2211 1
Q ss_pred --eccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 195 --TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 195 --~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
........|++-+.+| +||+|+.+|.||+||--..+....+.+....|..|+.+.||+||++.+ +..|.|+|.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1234467788877554 699999999999999543333344556788999999999999998776 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0013 Score=68.63 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=123.0
Q ss_pred cEEEEECCCCceEEeecC-CCCCeEEEEEec---C----CCEEEEEeC----------CCcEEEEECCCC----eeeeEe
Q 006497 137 AIKYWQNNMNNVKANKSA-HKESVRDLSFCR---T----DLKFCSCSD----------DTTVKVWDFARC----QEERSL 194 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~-~~~~I~~l~~s~---d----~~~l~s~s~----------dg~I~iwdl~~~----~~~~~~ 194 (643)
.|++.|..+.+.+..+.- ..+.+.+++... + ..+|++|+. .|.|.++++.+. ..+..+
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 577787777666554432 233444444332 2 456666542 288999999873 122222
Q ss_pred --eccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-eeEEe-ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 195 --TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-ELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270 (643)
Q Consensus 195 --~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~ 270 (643)
....+.|++|+-. ++ .|+++. ++.|++|++...+ .+..- ......+.++... +++|++|+....|.++..+
T Consensus 83 ~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 2356789998876 33 455544 4889999998777 33222 1233356777665 6699999988888887554
Q ss_pred C-CeEEEEee--cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC-------c-ceEEEecc-cCcceEEE---EEc
Q 006497 271 A-MKELESFR--GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T-PQVEIHNV-HDNTVWDL---AWH 335 (643)
Q Consensus 271 ~-~~~~~~~~--~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~-------~-~~~~~~~~-h~~~V~~l---~~s 335 (643)
. .+.+..+. .....++++.+..++ +.+++++.+|.|.++..... . .+...... ....|+++ ++.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEee
Confidence 3 33333333 234568888888534 69999999999999987521 1 22222222 24567777 444
Q ss_pred C--CC------CEEEEEECCCeEEEE
Q 006497 336 P--IG------YLLCSGSNDHTTKFW 353 (643)
Q Consensus 336 ~--d~------~~L~sgs~Dg~V~iW 353 (643)
+ .+ ..++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 12 247888899998843
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.024 Score=57.76 Aligned_cols=271 Identities=8% Similarity=0.078 Sum_probs=125.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEE--ccC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAH---DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l--~~h---~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
-...+.+|.|..+..-+++|. .+.| +-..+.++.-... ... .-..++|.|.. .+.+++ +..+ +.+...+.
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~iv-G~~g-~ll~T~Dg 89 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIV-GEPG-LLLHTTDG 89 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEET-TEEEEE-EETT-EEEEESST
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecC-CceEEE-cCCc-eEEEecCC
Confidence 455899999996665566654 5543 2222222211111 111 22466777764 344444 4455 33344444
Q ss_pred CceEEeec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-eeEeeccCCCeEEEEEcCCCCEEEEEECCCc
Q 006497 146 NNVKANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE-ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221 (643)
Q Consensus 146 ~~~~~~~~---~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~-~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~ 221 (643)
++.-..+. ........+....++ .+..++..|.|+.=. +.++. ..........+..+.-++|+++++++.....
T Consensus 90 G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 90 GKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44333221 122334444444444 333345556554432 22222 2223344567888888999998888866555
Q ss_pred EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC-CCCeEEEE----eecCCCCeEEEEEecCCCC
Q 006497 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI-RAMKELES----FRGHRKDVTALAWHPFHEE 296 (643)
Q Consensus 222 I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~-~~~~~~~~----~~~~~~~I~~l~~sp~~~~ 296 (643)
+.-||--...-...-......|.++.|.+++.+.+++ ..|.|++=|. ...+.... +......+..++|.+ ++.
T Consensus 168 ~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~-~~~ 245 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRP-PNE 245 (302)
T ss_dssp EEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESS-SS-
T ss_pred EEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecC-CCC
Confidence 5677754322222222345789999999998765544 8888888872 22222222 112333578999997 555
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEec--ccCcceEEEEEcCCCCEEEEEECCCeEEEE
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iW 353 (643)
+.++|+ .|.+. ...+.++.-.+... .-...++.|.|..+.+ -++.+.||.|.-|
T Consensus 246 ~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAVGG-SGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp EEEEES-TT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred EEEEeC-CccEE-EeCCCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 555554 55553 34444444333332 2244688898885544 4555678988766
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.021 Score=64.65 Aligned_cols=282 Identities=12% Similarity=0.126 Sum_probs=154.7
Q ss_pred CCCCCeEEEEEcCCC------CEEEEEECCCcEEEEe-CCCCceEEEE--c--cCCCCEEEEEEcCCCCEEEEEeCCCcE
Q 006497 70 KNRCSINRVLWTPTG------RRLITGSQSGEFTLWN-GQSFNFEMIL--Q--AHDHAIRSMVWSHNDNWMVSGDDGGAI 138 (643)
Q Consensus 70 ~h~~~I~~i~~spdg------~~L~tgs~dg~I~iwd-~~~~~~~~~l--~--~h~~~V~~l~~s~~~~~L~sg~~dg~V 138 (643)
.-...|.|+.++|-+ +++++|..+..+.+.- ..+...+... . .-...|.-.++--|..+|.++..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 345689999999742 3788887766554432 2332222211 1 112345555666667899999999998
Q ss_pred EEEEC--CCCceEEeec--CCCCCeEEEEEecCCCEEEEEeC--------------------------------------
Q 006497 139 KYWQN--NMNNVKANKS--AHKESVRDLSFCRTDLKFCSCSD-------------------------------------- 176 (643)
Q Consensus 139 ~iwd~--~~~~~~~~~~--~~~~~I~~l~~s~d~~~l~s~s~-------------------------------------- 176 (643)
..+.+ .++......+ --..++.--.|+..++.-+.+..
T Consensus 608 ~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l 687 (1096)
T KOG1897|consen 608 LYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSL 687 (1096)
T ss_pred EEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceE
Confidence 77754 3333221111 11122222222222222111111
Q ss_pred ----CCcEEEEECCCCeee--eEeeccCCCeEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCceeEEe
Q 006497 177 ----DTTVKVWDFARCQEE--RSLTGHGWDVKSVDWHPTKSLLVSGGKD--------------SLVKLWDAKSGRELCSF 236 (643)
Q Consensus 177 ----dg~I~iwdl~~~~~~--~~~~~~~~~V~~l~~sp~~~~l~sgs~d--------------g~I~iwD~~~~~~~~~~ 236 (643)
.+.+++..++.-+++ +++. .....+.+++.+...++++.+.. ..++++|-++.+.+...
T Consensus 688 ~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~h 766 (1096)
T KOG1897|consen 688 ASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSH 766 (1096)
T ss_pred EEecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeec
Confidence 233334333322211 1211 22345566766544444443321 13667777766555443
Q ss_pred ccCC----CcEEEEEEcCC-CCEEEEEE----------CCCcEEEEECCCCeEEEEeec--CCCCeEEEEEecCCCCEEE
Q 006497 237 HGHK----NMVLCVKWNQN-GNWVLTAS----------KDQIIKLYDIRAMKELESFRG--HRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 237 ~~~~----~~i~~l~~sp~-g~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~--~~~~I~~l~~sp~~~~~l~ 299 (643)
+-.. -.|.++.|..| +.++++|+ ..|.|.||.....+.+..... -++.+.++..- ++++||
T Consensus 767 ef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA 844 (1096)
T KOG1897|consen 767 EFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLA 844 (1096)
T ss_pred cccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEE
Confidence 2111 23555568877 67777776 357788888766444433322 23445555443 577777
Q ss_pred EEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 300 SGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 300 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+- +..|++|+..+++. ......+...+..+...-.++.+++|..-+.+.+-..+.
T Consensus 845 ~I--n~~vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 845 GI--NQSVRLYEWTTERE-LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred ec--CcEEEEEEccccce-ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 54 56899999876643 344445677888898888899999999888887765543
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=5e-05 Score=82.35 Aligned_cols=13 Identities=46% Similarity=0.907 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCC
Q 006497 579 GGFPNGMQGPPNS 591 (643)
Q Consensus 579 ~~~~~~~~~~p~~ 591 (643)
+||++|-+.||++
T Consensus 589 ~g~~Gg~ppPP~~ 601 (1102)
T KOG1924|consen 589 GGFLGGPPPPPPP 601 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 5777665555553
|
|
| >KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.97 E-value=4.1e-05 Score=82.94 Aligned_cols=8 Identities=50% Similarity=0.887 Sum_probs=3.3
Q ss_pred CCCCCCCC
Q 006497 611 PMMPGYNP 618 (643)
Q Consensus 611 ~~~~~~~~ 618 (643)
++++|.||
T Consensus 598 PP~~gm~p 605 (1102)
T KOG1924|consen 598 PPPPGMFP 605 (1102)
T ss_pred CCCCCccc
Confidence 33445333
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.011 Score=62.68 Aligned_cols=89 Identities=13% Similarity=0.293 Sum_probs=59.4
Q ss_pred EEEEcCCCCEEEEEECCCcEEE---EeCC-----CCceEEEEcc---CC--CCEEEEEEcC-----------CCCEEEEE
Q 006497 77 RVLWTPTGRRLITGSQSGEFTL---WNGQ-----SFNFEMILQA---HD--HAIRSMVWSH-----------NDNWMVSG 132 (643)
Q Consensus 77 ~i~~spdg~~L~tgs~dg~I~i---wd~~-----~~~~~~~l~~---h~--~~V~~l~~s~-----------~~~~L~sg 132 (643)
+++.++++++||.+..+..+.+ |+.+ .........+ ++ +.|+++.|.+ |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987776655 5331 1122222211 11 5777777643 35689999
Q ss_pred eCCCcEEEEECCCCceEEeecCCCCCeEEEEEec
Q 006497 133 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR 166 (643)
Q Consensus 133 ~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~ 166 (643)
..+|.|++|.. ++.++.....|.+.|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999976 5555555566788888877643
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0026 Score=60.28 Aligned_cols=215 Identities=9% Similarity=0.073 Sum_probs=122.8
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECC--CCceEEee-----c
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND---NWMVSGDDGGAIKYWQNN--MNNVKANK-----S 153 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~---~~L~sg~~dg~V~iwd~~--~~~~~~~~-----~ 153 (643)
+.+|.+--..+.|.-||.+..+..+. +-....+..+.+--.+ .+.+.++..-.|.-||.. .-.+..++ .
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra-~ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d 105 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRA-KIEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPD 105 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEE-EEecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCch
Confidence 34555555677888899887543322 2112223333442222 233334443345556632 22222221 1
Q ss_pred CCCCCeEEEEEecCCCEEEEEeC---------CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEE-EECCCcEE
Q 006497 154 AHKESVRDLSFCRTDLKFCSCSD---------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVS-GGKDSLVK 223 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~~l~s~s~---------dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~s-gs~dg~I~ 223 (643)
..+...++-..+|+|++++-.-. .|.++.|-... .+..+...-.--+.|+|+.+.+.+.. -+.+-+|.
T Consensus 106 ~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 106 RKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred HHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 12455666777899988543211 24556655432 22223222333467899887776554 45566777
Q ss_pred EEE--CCCC-----ceeEEeccC----CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEec
Q 006497 224 LWD--AKSG-----RELCSFHGH----KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHP 292 (643)
Q Consensus 224 iwD--~~~~-----~~~~~~~~~----~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp 292 (643)
-|| ..++ +.+..++.. .-.-..+++..+|++.+++-..++|..+|..+++.+.+++.....|++++|--
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 787 4444 334444321 11123445566888888888899999999999999999999999999999964
Q ss_pred CCCCEEEEE
Q 006497 293 FHEEYFVSG 301 (643)
Q Consensus 293 ~~~~~l~sg 301 (643)
.+-+++++.
T Consensus 264 kn~d~~yvT 272 (310)
T KOG4499|consen 264 KNLDILYVT 272 (310)
T ss_pred CCccEEEEE
Confidence 333444443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.021 Score=59.36 Aligned_cols=244 Identities=10% Similarity=0.072 Sum_probs=118.3
Q ss_pred eCCCCceEEEEccCCCCEEEE-----EEcCCCCEEEEEe-CCCc--EEEEECCCCceEEeecCCCCCeEEEEEecCCCEE
Q 006497 100 NGQSFNFEMILQAHDHAIRSM-----VWSHNDNWMVSGD-DGGA--IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171 (643)
Q Consensus 100 d~~~~~~~~~l~~h~~~V~~l-----~~s~~~~~L~sg~-~dg~--V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l 171 (643)
|-.++..+..+.........+ +|..||+.|+.++ .||. +.+.|+++++..+...+.........++++++.|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~ 95 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRAL 95 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEE
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeE
Confidence 566776666666544433333 5667886665544 4554 6666888888777655433333356677888887
Q ss_pred EEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEE--cCCCCEEEEEEC----------------------CCcEEEEEC
Q 006497 172 CSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW--HPTKSLLVSGGK----------------------DSLVKLWDA 227 (643)
Q Consensus 172 ~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~--sp~~~~l~sgs~----------------------dg~I~iwD~ 227 (643)
+-...+..|+..|+++.+....+......+-...| +.|+..++-.-. .+.|...|+
T Consensus 96 ~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 96 YYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp EEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred EEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 76666778999999998776666655555544555 345555433211 124666788
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCC-CEEEEEEC---CC-cEEEEECCC-CeEEEEeecCC--CCeEEEEEecCCCCEEE
Q 006497 228 KSGRELCSFHGHKNMVLCVKWNQNG-NWVLTASK---DQ-IIKLYDIRA-MKELESFRGHR--KDVTALAWHPFHEEYFV 299 (643)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~l~~sp~g-~~l~s~s~---dg-~I~iwd~~~-~~~~~~~~~~~--~~I~~l~~sp~~~~~l~ 299 (643)
++++....+. ...++..+.|+|.. .+|+.|.+ +. .-|||-+++ +...+.+..+. ..+..=-|.+++..+..
T Consensus 176 ~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 176 KTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp TT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 8876554444 56788999999954 45555543 11 135665543 33334333222 23445567884444444
Q ss_pred EEe-C---CCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECC
Q 006497 300 SGS-L---DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 300 sgs-~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
.+- . +..|.-+|..+....... .......+-.++|+++++-=+.|
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~---~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLM---EMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEE---EE-SEEEEEE-TTSSEEEEEE--
T ss_pred EeecCCCCceEEEeeCCCCCCceEEE---eCCceeeeEEcCCCCEEEecCCC
Confidence 333 2 234556667665443221 12245567778899988765554
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.016 Score=59.40 Aligned_cols=217 Identities=12% Similarity=0.080 Sum_probs=126.4
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec---
Q 006497 121 VWSHNDNWM-VSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG--- 196 (643)
Q Consensus 121 ~~s~~~~~L-~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~--- 196 (643)
.|.++.+.| .+--..+.|.-|+..+++..... ....+.++....++..|+++. ..+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~--~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP--SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE--CCCCcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccC
Confidence 456666544 44445677888888766443322 334445555555555566553 3466677655544333321
Q ss_pred --cCCCeEEEEEcCCCCEEEEEEC-----------CCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC-C
Q 006497 197 --HGWDVKSVDWHPTKSLLVSGGK-----------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q 262 (643)
Q Consensus 197 --~~~~V~~l~~sp~~~~l~sgs~-----------dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g 262 (643)
.....+.+.+.++|.+.++... -|.|+.+|. .+..++.+..+-..-+.|+||||++.|+.+... +
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1235668888899886655433 123444444 456666665555566889999999888877654 7
Q ss_pred cEEEEECCC--C----eE-EEEeecCCCCeEEEEEecCCCCEEEEEeCCC-cEEEEECCCCcceEEEecccCcceEEEEE
Q 006497 263 IIKLYDIRA--M----KE-LESFRGHRKDVTALAWHPFHEEYFVSGSLDG-SIFHWLVGHETPQVEIHNVHDNTVWDLAW 334 (643)
Q Consensus 263 ~I~iwd~~~--~----~~-~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 334 (643)
.|.-|++.. + +. ...+....+..-.++... ++++.+++-.+| .|.+|+.+ ++.+..+.. ....+++++|
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~~~F 262 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTNPAF 262 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCccceE
Confidence 788887752 1 11 122222334555666665 566665444444 89999987 555444443 3367888888
Q ss_pred cC-CCCEEEEEE
Q 006497 335 HP-IGYLLCSGS 345 (643)
Q Consensus 335 s~-d~~~L~sgs 345 (643)
-- +.+.|++.+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 64 334444443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0093 Score=58.77 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=117.7
Q ss_pred EEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 117 IRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKSAHKE-SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 117 V~~l~~s~~~~~L~sg~~dg--~V~iwd~~~~~~~~~~~~~~~-~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
...+.|..++.++-+.+.-| .|+.+|+++++......-... --..++.. +++.+...-.++...+||.++.+.+..
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 45677766777777777766 699999999987765533222 22334444 334444455689999999999988887
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCC-----CcEEEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-----NMVLCVKWNQNGNWVLTASKDQIIKLYD 268 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-----~~i~~l~~sp~g~~l~s~s~dg~I~iwd 268 (643)
+.- ...=..|+. |++.|+.......|+++|.++.+.+.++.-.. ..++-+.|- +|...|-.-....|...|
T Consensus 126 ~~y-~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Id 201 (264)
T PF05096_consen 126 FPY-PGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRID 201 (264)
T ss_dssp EE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEE
T ss_pred Eec-CCcceEEEc--CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEe
Confidence 763 345566663 57778887778899999998887776654221 235667775 565555555667888889
Q ss_pred CCCCeEEEEeec---------------CCCCeEEEEEecCCCCEEEEEe
Q 006497 269 IRAMKELESFRG---------------HRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 269 ~~~~~~~~~~~~---------------~~~~I~~l~~sp~~~~~l~sgs 302 (643)
..+++.+..+.. ...-.+.|++++..+.+++||-
T Consensus 202 p~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 202 PETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 999998776631 1245789999997777777773
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0023 Score=72.63 Aligned_cols=134 Identities=10% Similarity=0.119 Sum_probs=97.2
Q ss_pred CCCcEEEEeCCCCceEEEEccCCCC-EEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCc--eEEe---ecCCCCCeE
Q 006497 92 QSGEFTLWNGQSFNFEMILQAHDHA-IRSMVWSH-----NDNWMVSGDDGGAIKYWQNNMNN--VKAN---KSAHKESVR 160 (643)
Q Consensus 92 ~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----~~~~L~sg~~dg~V~iwd~~~~~--~~~~---~~~~~~~I~ 160 (643)
....|+-.|++.++.+..++.+... |..++=.. +..-.++|-.+..|..||.+... ++.. ........+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence 4567888899999999999988755 66654321 12345677888889999976532 3211 113455678
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 161 DLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 161 ~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
|++-..+| +||+|+.+|.|++||-...+....+.+.+.+|..|+++.||++|++.|. ..|.|+|.
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 88877666 6999999999999995443334455567889999999999999887765 66777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.062 Score=61.75 Aligned_cols=239 Identities=11% Similarity=0.010 Sum_probs=122.6
Q ss_pred CCeEEEEEcCCCCEEEEEECC-----CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC------CcEEEE
Q 006497 73 CSINRVLWTPTGRRLITGSQS-----GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG------GAIKYW 141 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d------g~V~iw 141 (643)
..+..+.|++|+++|+.+... ..|++.|+.+++.+...... .-..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~--~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN--VEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC--cceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 457888999999988876432 35888899887633222111 11469999998866655432 357777
Q ss_pred ECCCC--ceEEeecCCCCCeE-EEEEecCCCEEEEEeC---CCcEEEEECC--CCeeeeEeeccCCCeEEEEEcCCCCEE
Q 006497 142 QNNMN--NVKANKSAHKESVR-DLSFCRTDLKFCSCSD---DTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 142 d~~~~--~~~~~~~~~~~~I~-~l~~s~d~~~l~s~s~---dg~I~iwdl~--~~~~~~~~~~~~~~V~~l~~sp~~~~l 213 (643)
++.+. +....+........ .+..+.++++++..+. ++.+.+|+.. +......+.........+. +.. ..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 88877 33333333233333 3333447777654433 4578888852 2322222222222222222 222 333
Q ss_pred EEEECC----CcEEEEECCCCceeEEeccC--CCcEEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEee-cCCCCe
Q 006497 214 VSGGKD----SLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-MKELESFR-GHRKDV 285 (643)
Q Consensus 214 ~sgs~d----g~I~iwD~~~~~~~~~~~~~--~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~-~~~~~~~~-~~~~~I 285 (643)
...+.. ..|...++.+......+..+ ...|..+.+. .+.++++...++.-+++-+.. ++.+..+. .....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~ 361 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAYV 361 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCceE
Confidence 333322 23444455522222233333 2368888887 334555666677655544332 22334333 122223
Q ss_pred EEEEEe--cCCCCEEEEEeC---CCcEEEEECCCCc
Q 006497 286 TALAWH--PFHEEYFVSGSL---DGSIFHWLVGHET 316 (643)
Q Consensus 286 ~~l~~s--p~~~~~l~sgs~---dg~I~iwd~~~~~ 316 (643)
..+.++ .+++.++++.+. -+.|+.+|..+..
T Consensus 362 ~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 362 TWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred eeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 333343 322445554443 3678888876643
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.022 Score=58.04 Aligned_cols=227 Identities=11% Similarity=0.094 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc---cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eE
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ---AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VK 149 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~-~~ 149 (643)
..++|.|..+ +.+++ +..+. .+...+.++.-..+. .-.+....+....++ .+..++..|.|..=. +.++ -.
T Consensus 63 ~l~~I~f~~~-~g~iv-G~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 63 HLNSISFDGN-EGWIV-GEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDG-SAELAGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp EEEEEEEETT-EEEEE-EETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETT-EEEEEETT--EEEES-STTSSEE
T ss_pred eEEEEEecCC-ceEEE-cCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCC-cEEEEcCCCcEEEeC-CCCCCee
Confidence 4677888643 33444 44553 344333343322221 123344445544444 344445556544332 2222 23
Q ss_pred EeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEEC-C
Q 006497 150 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA-K 228 (643)
Q Consensus 150 ~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~-~ 228 (643)
.........+..+..++|+++++++.....+.-||-....-...-......|.++.|.+++.+.+++ ..|.|++=|. .
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~ 216 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPD 216 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TT
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCC
Confidence 3334556788999999999988887666666678764432333333356789999999997765544 8888888872 2
Q ss_pred CCceeEE----eccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEe---ecCCCCeEEEEEecCCCCEEEEE
Q 006497 229 SGRELCS----FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF---RGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 229 ~~~~~~~----~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
..+.... +......+..++|.+++...++|+ .|.+ +...+.++.=... ......++.+.|.. . +.-.+.
T Consensus 217 ~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~l 292 (302)
T PF14870_consen 217 DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVL 292 (302)
T ss_dssp EEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE
T ss_pred CccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEE
Confidence 2222111 112233488999998877666555 4544 3444444443333 23455788899985 3 444444
Q ss_pred eCCCcEEEE
Q 006497 302 SLDGSIFHW 310 (643)
Q Consensus 302 s~dg~I~iw 310 (643)
+.+|.|.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 568887665
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0052 Score=68.80 Aligned_cols=183 Identities=9% Similarity=0.088 Sum_probs=105.2
Q ss_pred CCeEEEEEecCCCEEEEEe------CCC--cEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECC---------
Q 006497 157 ESVRDLSFCRTDLKFCSCS------DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD--------- 219 (643)
Q Consensus 157 ~~I~~l~~s~d~~~l~s~s------~dg--~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~d--------- 219 (643)
..+.+.++++|++.++... .|. .|.+++.... . ..+.. ....+.-.|++|++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~-~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV-A-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCc-c-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4678899999999877665 233 5556565332 2 33322 2347889999998877776533
Q ss_pred ---CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEE---EECCCCe-EE---EEeecCC-CCeEEE
Q 006497 220 ---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL---YDIRAMK-EL---ESFRGHR-KDVTAL 288 (643)
Q Consensus 220 ---g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~i---wd~~~~~-~~---~~~~~~~-~~I~~l 288 (643)
+.|.+.+++.++... .....|..+.|++||..|+... ++.|.| -....++ .+ ..+.... ..+..+
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223333443332222 2345799999999999988776 567777 4434443 11 1122222 336889
Q ss_pred EEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc--cCcceEEEEEcCCCCEEEEEECCCeE
Q 006497 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV--HDNTVWDLAWHPIGYLLCSGSNDHTT 350 (643)
Q Consensus 289 ~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~d~~~L~sgs~Dg~V 350 (643)
.|.. ++.++ ++..++...+|.+.-.......... ....+.+|+-+++ .|+....++.+
T Consensus 503 ~W~~-~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 503 DWRT-GDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred eEec-CCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 9997 55544 5555555555655333222222121 2446777776653 46666666633
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.011 Score=58.46 Aligned_cols=167 Identities=7% Similarity=0.070 Sum_probs=114.1
Q ss_pred ccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 006497 111 QAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189 (643)
Q Consensus 111 ~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~-~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~ 189 (643)
.+-...|.++.|+++.+.|++..+...-.||=..+++++..+.. .-.....|.+..++.+.++--.++.+.++.++...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 44556699999999999999999888888887778888877632 12344567888888877777778888888876553
Q ss_pred eeeEee----------ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee---EEeccC-------CCcEEEEEEc
Q 006497 190 EERSLT----------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL---CSFHGH-------KNMVLCVKWN 249 (643)
Q Consensus 190 ~~~~~~----------~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~---~~~~~~-------~~~i~~l~~s 249 (643)
.+..++ ........++|++.+..|+++-+-.-+.||.+...... .....+ -..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 322211 12456778999999999999988887888776533211 111111 1346778888
Q ss_pred C-CCCEEEEEECCCcEEEEECCCCeEEEEe
Q 006497 250 Q-NGNWVLTASKDQIIKLYDIRAMKELESF 278 (643)
Q Consensus 250 p-~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 278 (643)
+ .+.+|+.+.+++.|.-.|.+ ++.+..+
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~-G~~~~~l 270 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLS-GEVIELL 270 (316)
T ss_pred CCCCcEEEEecCCceEEEEecC-CCeeeeE
Confidence 7 45566667777788888865 4434333
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.043 Score=54.14 Aligned_cols=185 Identities=6% Similarity=0.010 Sum_probs=120.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEECCC--cEEEEeCCCCceEEEEccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 147 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~ 147 (643)
...-...+.|..++.++-+.+.-| .|+.+|+++++......-.. .--..++.. ++++....-.++...+||.++.+
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~ 121 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLK 121 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccce
Confidence 334455777877787777777665 69999999998776654322 112234443 34555566788999999999888
Q ss_pred eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-----CCCeEEEEEcCCCCEEEEEECCCcE
Q 006497 148 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-----GWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 148 ~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-----~~~V~~l~~sp~~~~l~sgs~dg~I 222 (643)
.+..+.- ...=..|+ .|++.|+..+....|+++|.++.+..+.+... -..++.+.|. +|...|=.-....|
T Consensus 122 ~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 122 KIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 8777643 34555665 47777888888889999999887777666532 2356778887 67666666677789
Q ss_pred EEEECCCCceeEEecc---------------CCCcEEEEEEcCCCCEEEEEEC
Q 006497 223 KLWDAKSGRELCSFHG---------------HKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 223 ~iwD~~~~~~~~~~~~---------------~~~~i~~l~~sp~g~~l~s~s~ 260 (643)
...|..+|+.+..+.. ..+-.+.|+|.+..+.|++.+.
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 9999999988776520 1345799999987766666553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.003 Score=70.79 Aligned_cols=213 Identities=8% Similarity=0.030 Sum_probs=106.0
Q ss_pred cEEEEeCCCCceEEEEccCCCC-EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceEEeecCCCCC-eEEEEEec
Q 006497 95 EFTLWNGQSFNFEMILQAHDHA-IRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNNVKANKSAHKES-VRDLSFCR 166 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~-V~~l~~s~~~~~L~sg~~d------g~V~iwd~~~~~~~~~~~~~~~~-I~~l~~s~ 166 (643)
.+..||..+.+....-.-.... -.+++. -++.++++|+.+ ..+..||..++.-...-.-.... -.+++ .-
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EE
Confidence 5677887765433211111111 122232 256777777754 34777887766432211111111 11222 22
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCeeee--EeeccCCCeEEEEEcCCCCEEEEEECCC-------------------
Q 006497 167 TDLKFCSCSDDT-----TVKVWDFARCQEER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS------------------- 220 (643)
Q Consensus 167 d~~~l~s~s~dg-----~I~iwdl~~~~~~~--~~~~~~~~V~~l~~sp~~~~l~sgs~dg------------------- 220 (643)
+++..+.|+.++ ++.+||..+.+-.. .+.........+++ ++++.++|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 666777777653 48889987653322 11111111222232 577777776542
Q ss_pred ----cEEEEECCCCcee--EEeccCCCcEEEEEEcCCCCEEEEEECC------CcEEEEECCC---CeEEEEeecCCCCe
Q 006497 221 ----LVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVLTASKD------QIIKLYDIRA---MKELESFRGHRKDV 285 (643)
Q Consensus 221 ----~I~iwD~~~~~~~--~~~~~~~~~i~~l~~sp~g~~l~s~s~d------g~I~iwd~~~---~~~~~~~~~~~~~I 285 (643)
.|..||.++.+-. ..+.........+++ ++++.++|+.+ ..+..||.++ ++.+..+.......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 4777887765432 111111111112222 45666666643 2467898875 34444444333333
Q ss_pred EEEEEecCCCCEEEEEeCCC--cEEEEECCCCc
Q 006497 286 TALAWHPFHEEYFVSGSLDG--SIFHWLVGHET 316 (643)
Q Consensus 286 ~~l~~sp~~~~~l~sgs~dg--~I~iwd~~~~~ 316 (643)
..+.+ ++.+.++|+.|+ .+..||..+.+
T Consensus 507 ~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 33333 688999999888 56666665443
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.068 Score=61.46 Aligned_cols=237 Identities=13% Similarity=0.035 Sum_probs=123.5
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCC------CcEEEE
Q 006497 115 HAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------TTVKVW 183 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~~d-----g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d------g~I~iw 183 (643)
-.+..+.|++|+++|+.+.+. ..|++.|+.+++.+....... -..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346678899999988865332 347888888776332221111 1458999998876655432 468888
Q ss_pred ECCCC--eeeeEeeccCCCeE-EEEEcCCCCEEEEEEC---CCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCEE
Q 006497 184 DFARC--QEERSLTGHGWDVK-SVDWHPTKSLLVSGGK---DSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWV 255 (643)
Q Consensus 184 dl~~~--~~~~~~~~~~~~V~-~l~~sp~~~~l~sgs~---dg~I~iwD~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l 255 (643)
++.+. +....+........ .+..+.++++++..+. ++.+.+|+.. +++....+.........+. +.. ..|
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l 282 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HRF 282 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CEE
Confidence 98877 33444443333333 3334447776665543 3568888853 3332222222222222222 222 334
Q ss_pred EEEECC----CcEEEEECCCCeEEEEeecC--CCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC-cceEEEecccCcc
Q 006497 256 LTASKD----QIIKLYDIRAMKELESFRGH--RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-TPQVEIHNVHDNT 328 (643)
Q Consensus 256 ~s~s~d----g~I~iwd~~~~~~~~~~~~~--~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~h~~~ 328 (643)
+..+.. ..|...++.+......+..+ ...|..+.+. .+.++++...++.-+++-++.. .....+.......
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~ 360 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGIAFDDPAY 360 (686)
T ss_pred EEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEecCCCCce
Confidence 333322 23444455421222333334 2367888887 4677778887887666655432 2222222111222
Q ss_pred eEEEEEc--CCC-CEEEEEEC---CCeEEEEecCC
Q 006497 329 VWDLAWH--PIG-YLLCSGSN---DHTTKFWCRNR 357 (643)
Q Consensus 329 V~~l~~s--~d~-~~L~sgs~---Dg~V~iWd~~~ 357 (643)
+..+.++ .++ .++++.+. -+.|..||++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 3333444 333 34444433 35677777654
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0034 Score=70.27 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=104.9
Q ss_pred CCeEEEEEcCCCCEEEEEE------CCC--cEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---------
Q 006497 73 CSINRVLWTPTGRRLITGS------QSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG--------- 135 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs------~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d--------- 135 (643)
..|.+.++++||+.++... .|. .|.+++.. +.......+ ...++-.|++|++.|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4688999999999888765 243 45555543 222222332 347889999998877776533
Q ss_pred ---CcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEE---EECCCCee-e---eEeec-cCCCeEEE
Q 006497 136 ---GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV---WDFARCQE-E---RSLTG-HGWDVKSV 204 (643)
Q Consensus 136 ---g~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~i---wdl~~~~~-~---~~~~~-~~~~V~~l 204 (643)
+.+.+.+++.++... .....|..+.|++||..|+... ++.|++ -....++. + ..+.. ....+.++
T Consensus 427 ~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 427 PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 223222333333222 3356799999999999988766 577777 34333431 1 11222 23346889
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCC-CceeEEecc--CCCcEEEEEEcCCCCEEEEEECCCcEEE
Q 006497 205 DWHPTKSLLVSGGKDSLVKLWDAKS-GRELCSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKL 266 (643)
Q Consensus 205 ~~sp~~~~l~sgs~dg~I~iwD~~~-~~~~~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~I~i 266 (643)
+|..++.++ ++..++...+|.+.- +.....+.. ....+..|+-++ ..|++...++.+.+
T Consensus 503 ~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~--~~iyv~~~~g~~~l 564 (591)
T PRK13616 503 DWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASP--STVYVTDARAVLQL 564 (591)
T ss_pred eEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCC--ceEEEEcCCceEEe
Confidence 999888754 555555444454331 222212122 244566666654 34556666664443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.081 Score=55.29 Aligned_cols=271 Identities=8% Similarity=0.057 Sum_probs=131.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEE-e-CCCCceEEE-EccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLW-N-GQSFNFEMI-LQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iw-d-~~~~~~~~~-l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~ 148 (643)
...+++|+|..+.+-+++|. +|.|..= | -++.+.... +......+.++.|..+ +.+++ +..+.|..- .+.++.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~S-~DgG~t 120 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLHT-TDGGKN 120 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEEE-CCCCCC
Confidence 56799999986666566664 4543322 2 112222110 1112334778887643 34444 445543332 222222
Q ss_pred EEeec---CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe-eccCCCeEEEEEcCCCCEEEEEECCCcEEE
Q 006497 149 KANKS---AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 149 ~~~~~---~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~-~~~~~~V~~l~~sp~~~~l~sgs~dg~I~i 224 (643)
-..+. ........+....++. +..++..|.|..=+ +.++.-..+ ......+.++.+.+++.+++++ ..|.+..
T Consensus 121 W~~~~~~~~~~~~~~~i~~~~~~~-~~~~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~~g-~~G~i~~ 197 (334)
T PRK13684 121 WTRIPLSEKLPGSPYLITALGPGT-AEMATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVAVS-SRGNFYS 197 (334)
T ss_pred CeEccCCcCCCCCceEEEEECCCc-ceeeeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEEEe-CCceEEE
Confidence 21111 1111222222222232 33334455443322 122222222 2234568899999887665554 4565543
Q ss_pred -EECCCCceeEEe-ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec----CCCCeEEEEEecCCCCEE
Q 006497 225 -WDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG----HRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 225 -wD~~~~~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~----~~~~I~~l~~sp~~~~~l 298 (643)
+| ..++....+ ......++++.+.++++.++++ ..|.+++=+.+.++.-..... ....+.++.+.+ ++.++
T Consensus 198 s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~-~~~~~ 274 (334)
T PRK13684 198 TWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT-PGEIW 274 (334)
T ss_pred EcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC-CCCEE
Confidence 22 222222222 2345678999999988876665 567665433333333222111 224578888887 45554
Q ss_pred EEEeCCCcEEEEECCCCcceEEEe--cccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
+ ++.+|.|.. ..+.++.-.... ..-....+.+.|..+++.++ .+..|.|..|+-
T Consensus 275 ~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 275 A-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred E-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 4 455776643 333333222221 11123577888876665544 567899988864
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.027 Score=55.21 Aligned_cols=236 Identities=11% Similarity=0.053 Sum_probs=138.8
Q ss_pred EEEEEEcCCC-CEEEEEeCCCc-EEEEECCCCceEEeecCCCCC--eEEEEEecCCCEEEEEeCC-----CcEEEEECCC
Q 006497 117 IRSMVWSHND-NWMVSGDDGGA-IKYWQNNMNNVKANKSAHKES--VRDLSFCRTDLKFCSCSDD-----TTVKVWDFAR 187 (643)
Q Consensus 117 V~~l~~s~~~-~~L~sg~~dg~-V~iwd~~~~~~~~~~~~~~~~--I~~l~~s~d~~~l~s~s~d-----g~I~iwdl~~ 187 (643)
...|+|+|.. .-++.+-.-|+ ..++|.+.......+...++. .-.=.|++|+.+|+..-+| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3456676653 34555555555 467787777655554322221 1223689999998876544 7899999864
Q ss_pred C-eeeeEeeccCCCeEEEEEcCCCCEEEEEEC------------------CCcEEEEECCCCceeEEec----cCCCcEE
Q 006497 188 C-QEERSLTGHGWDVKSVDWHPTKSLLVSGGK------------------DSLVKLWDAKSGRELCSFH----GHKNMVL 244 (643)
Q Consensus 188 ~-~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~------------------dg~I~iwD~~~~~~~~~~~----~~~~~i~ 244 (643)
. +.+.++..|.-.-..+.|..||++++++.. .-++.+.|..+++.+.+.. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 3 445566777777788999999999888743 0124445555555544322 2345688
Q ss_pred EEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEeec-------CCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 245 CVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFRG-------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 245 ~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~-------~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
.++...||..++.+-..| -..|=-.+.++.+.-+.. ....|-+|+.+..++-..+++-..+...+||.
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da 309 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDA 309 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEc
Confidence 888888887665543322 111112233444443332 23457788888744444555555667889999
Q ss_pred CCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 313 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 313 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
.++........ ..+..++- ...-+++.+.+|.+.++....
T Consensus 310 ~tG~vv~~a~l---~daaGva~--~~~gf~vssg~G~~~~~s~~~ 349 (366)
T COG3490 310 ATGAVVSEAAL---PDAAGVAA--AKGGFAVSSGQGRIIFYSRAA 349 (366)
T ss_pred CCCcEEecccc---ccccccee--ccCceEEecCCceEEeccccc
Confidence 88765433221 12233333 333466667789999886533
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00011 Score=69.47 Aligned_cols=141 Identities=15% Similarity=0.130 Sum_probs=85.0
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEee-ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeE-EeccCCCcEEE-EE
Q 006497 171 FCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC-SFHGHKNMVLC-VK 247 (643)
Q Consensus 171 l~s~s~dg~I~iwdl~~~~~~~~~~-~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~-~~~~~~~~i~~-l~ 247 (643)
|...+.|+.|+-++++..+....-. -+......+. -+..+++|+.+|.|++|......... .+......|.+ |.
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip 109 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP 109 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence 4455678888888875433221111 1111111222 34679999999999999887322111 11112223333 33
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCC-CCeEEEEEecCCCCEEEEE--eCCCcEEEEECCCC
Q 006497 248 WNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR-KDVTALAWHPFHEEYFVSG--SLDGSIFHWLVGHE 315 (643)
Q Consensus 248 ~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~~I~~l~~sp~~~~~l~sg--s~dg~I~iwd~~~~ 315 (643)
--.++.+.++++.|+.|+.|++.-.+.+.....|. ..+..+..+. .+.+|+.. |.|..++.|++...
T Consensus 110 ~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 110 NGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcchhhh
Confidence 33356688999999999999999888877776666 4555555544 45666666 66777777777543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00012 Score=69.22 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=81.4
Q ss_pred EEEEEeCCCcEEEEECCCCceEEee-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe--eccCCCeEEE
Q 006497 128 WMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL--TGHGWDVKSV 204 (643)
Q Consensus 128 ~L~sg~~dg~V~iwd~~~~~~~~~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~--~~~~~~V~~l 204 (643)
.|...+.|+.|+-+++...+....- ..+... .....-+..+++++.+|.|++|+.......... ...+.....|
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 3444567788877766543322111 111111 222234567899999999999988632211111 1112222233
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCC-CcEEEEEEcCCCCEEEEE--ECCCcEEEEECCC
Q 006497 205 DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTA--SKDQIIKLYDIRA 271 (643)
Q Consensus 205 ~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-~~i~~l~~sp~g~~l~s~--s~dg~I~iwd~~~ 271 (643)
.-..++.+.++++.||.|+.|++.-.+.+.....|. ..+..+..+..+++|+.+ +.|..++.|++..
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 334456688999999999999999888777766666 444444444455555555 5566666666553
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0004 Score=74.28 Aligned_cols=94 Identities=19% Similarity=0.357 Sum_probs=80.1
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEE-EEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 006497 198 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL-CVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 276 (643)
Q Consensus 198 ~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~-~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 276 (643)
...|.-+.|+|.-.+||++..+|.|.+..++ .+.+.++..+...++ +++|.+||+.|++|-.||+|++.|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467889999999999999999999999988 778888876666676 99999999999999999999999999988877
Q ss_pred Eee-cCCCCeEEEEEec
Q 006497 277 SFR-GHRKDVTALAWHP 292 (643)
Q Consensus 277 ~~~-~~~~~I~~l~~sp 292 (643)
.+. .....|.++.|.+
T Consensus 99 ~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWDR 115 (665)
T ss_pred ccccccccchheeeccc
Confidence 632 3456788888863
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.03 Score=54.86 Aligned_cols=229 Identities=11% Similarity=0.118 Sum_probs=135.6
Q ss_pred EEEEEcCCCC-EEEEEECCCc-EEEEeCCCCceEEEEccCCCC--EEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 006497 76 NRVLWTPTGR-RLITGSQSGE-FTLWNGQSFNFEMILQAHDHA--IRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMN 146 (643)
Q Consensus 76 ~~i~~spdg~-~L~tgs~dg~-I~iwd~~~~~~~~~l~~h~~~--V~~l~~s~~~~~L~sg~~d-----g~V~iwd~~~~ 146 (643)
..|+|+|... -++.+-.-|+ ..++|..+.+...++...++. .-.=+|++||.+|+..-+| |.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3577787653 4566666554 678888877766555433222 1124689999999876554 78999998743
Q ss_pred -ceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEE--------------------EEECCCCeeeeEee----ccCCCe
Q 006497 147 -NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK--------------------VWDFARCQEERSLT----GHGWDV 201 (643)
Q Consensus 147 -~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~--------------------iwdl~~~~~~~~~~----~~~~~V 201 (643)
..+.++..|.-.-..+.|..|++.++.+. |-|. +.|..+++.+.+.. .+...|
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 34555677777788899999999988764 3233 33323333322211 233467
Q ss_pred EEEEEcCCCCEEEEEECCCc-----EEEEECCCCceeEEec-------cCCCcEEEEEEcCCCCEEEEEE-CCCcEEEEE
Q 006497 202 KSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYD 268 (643)
Q Consensus 202 ~~l~~sp~~~~l~sgs~dg~-----I~iwD~~~~~~~~~~~-------~~~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd 268 (643)
+.++...|+..++.+-..|. -.+=-.+.++.+.-+. ...+.|-+|+.+.+..+++..+ ..+...+||
T Consensus 229 RHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~d 308 (366)
T COG3490 229 RHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWD 308 (366)
T ss_pred eeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEE
Confidence 78888877765554432221 1111112233333222 1234577888887666665555 556788999
Q ss_pred CCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEE
Q 006497 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311 (643)
Q Consensus 269 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd 311 (643)
..++..+..-... .+..++. ...-|++.+.+|.+.++.
T Consensus 309 a~tG~vv~~a~l~--daaGva~---~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 309 AATGAVVSEAALP--DAAGVAA---AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cCCCcEEeccccc--cccccee---ccCceEEecCCceEEecc
Confidence 9999887654321 2222332 234455666788888774
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.081 Score=56.26 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=60.2
Q ss_pred cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEE-EEEc-CCC----------------C-EEEE
Q 006497 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC-VKWN-QNG----------------N-WVLT 257 (643)
Q Consensus 197 ~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~-l~~s-p~g----------------~-~l~s 257 (643)
....+.+|+.+|++++.++.+.-|.|.++|+.++..++.+++..+.-.. +... ... . +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3445789999999999999888899999999999988888876543111 1111 111 1 2334
Q ss_pred EECCCcEEEEECCCCeEEEEeec
Q 006497 258 ASKDQIIKLYDIRAMKELESFRG 280 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~~~~~~~~ 280 (643)
+-.-|.|.||+++++..+..+..
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEe
Confidence 55788999999999888877764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.078 Score=55.68 Aligned_cols=210 Identities=12% Similarity=0.152 Sum_probs=101.6
Q ss_pred cEEEEeecCCC-CCeEEEEEc-----------CCCCEEEEEE-CCCcEEEEeCCC----CceEEEEcc---CC----CCE
Q 006497 62 KFVHTSLNKNR-CSINRVLWT-----------PTGRRLITGS-QSGEFTLWNGQS----FNFEMILQA---HD----HAI 117 (643)
Q Consensus 62 ~~~~~~l~~h~-~~I~~i~~s-----------pdg~~L~tgs-~dg~I~iwd~~~----~~~~~~l~~---h~----~~V 117 (643)
+.+++.--.+. +++...-|+ .+.++|++.+ .++.|+|+|+.+ -++.++++. +. ..-
T Consensus 53 qVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~P 132 (461)
T PF05694_consen 53 QVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRP 132 (461)
T ss_dssp SEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEE
T ss_pred cEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCC
Confidence 44555544443 677777776 2456777766 678899999874 334555442 11 122
Q ss_pred EEEEEcCCCCEEEEEe--CC----CcEEEEECCCCceEEeecCC---CCCeEEEEEecCCCEEEEEeC------------
Q 006497 118 RSMVWSHNDNWMVSGD--DG----GAIKYWQNNMNNVKANKSAH---KESVRDLSFCRTDLKFCSCSD------------ 176 (643)
Q Consensus 118 ~~l~~s~~~~~L~sg~--~d----g~V~iwd~~~~~~~~~~~~~---~~~I~~l~~s~d~~~l~s~s~------------ 176 (643)
..+-..++|++++++- .+ |-+.+.|-++.+++...... ...-.++-|.+..+.+++...
T Consensus 133 HT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~ 212 (461)
T PF05694_consen 133 HTVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNP 212 (461)
T ss_dssp EEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---T
T ss_pred ceeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCCh
Confidence 2333446888888753 22 55888888888877766543 233456778888888887643
Q ss_pred --------CCcEEEEECCCCeeeeEeeccCC--CeEEEEEcC--CCCEE-EEEECCCcEEEE-ECCCCc----eeEEecc
Q 006497 177 --------DTTVKVWDFARCQEERSLTGHGW--DVKSVDWHP--TKSLL-VSGGKDSLVKLW-DAKSGR----ELCSFHG 238 (643)
Q Consensus 177 --------dg~I~iwdl~~~~~~~~~~~~~~--~V~~l~~sp--~~~~l-~sgs~dg~I~iw-D~~~~~----~~~~~~~ 238 (643)
..+|.+||+.+.+.++++..-.. ....|.|.. +..+= +.+.-..+|..| ..+.++ .+..+..
T Consensus 213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~ 292 (461)
T PF05694_consen 213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA 292 (461)
T ss_dssp TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence 35899999999999988875432 345666654 34433 333334445444 323332 2222211
Q ss_pred C-----------------CCcEEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 006497 239 H-----------------KNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 271 (643)
Q Consensus 239 ~-----------------~~~i~~l~~sp~g~~l~s~s-~dg~I~iwd~~~ 271 (643)
. ..-|+.|.+|-|.++|++.+ .+|.|+.||+..
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 0 23479999999999998776 689999999975
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.033 Score=55.06 Aligned_cols=163 Identities=10% Similarity=0.142 Sum_probs=113.9
Q ss_pred cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeecc-CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc
Q 006497 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 153 ~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~ 231 (643)
.+....|+++.|+++.+.|++..+...-.||=..+++.++++... -.....|.|..++.++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 445566999999999999999888887777766778888776532 2345678888788777777778888888776543
Q ss_pred eeEEe----------ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE---EEee-------cCCCCeEEEEEe
Q 006497 232 ELCSF----------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---ESFR-------GHRKDVTALAWH 291 (643)
Q Consensus 232 ~~~~~----------~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~~-------~~~~~I~~l~~s 291 (643)
.+..+ ...+.....++|++....|+++-+..=+.||.+...... .... ..-..|..+.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 22211 112456789999998888888888777777776533211 1111 112457788898
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC
Q 006497 292 PFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 292 p~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
+..+.+|+-+.+++.+.-.|.+..
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCCC
Confidence 877888888888888877777544
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0048 Score=52.14 Aligned_cols=101 Identities=13% Similarity=0.191 Sum_probs=68.5
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 75 INRVLWTP---TG-RRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 75 I~~i~~sp---dg-~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
|+++++.. || +.|++|+.|..|+||+-+. .+.++. ..+.|++++-... ..++.+..+|+|-+|+-.. .+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eee
Confidence 55666543 33 6799999999999998653 555554 4567888887755 6799999999999997532 222
Q ss_pred eecCCCCCeEEEEEecC---C-CEEEEEeCCCcEEE
Q 006497 151 NKSAHKESVRDLSFCRT---D-LKFCSCSDDTTVKV 182 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d---~-~~l~s~s~dg~I~i 182 (643)
..+ .+..+.++++..- + ..|++|-.+|.|-+
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 222 2334667666542 2 25888888887743
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.032 Score=64.18 Aligned_cols=195 Identities=9% Similarity=0.065 Sum_probs=121.2
Q ss_pred CCEEEEEECCCcEEEEeCCCCceEEEEccCCCC--------EEEEEEcC----------------CCCEEEEEeCCCcEE
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA--------IRSMVWSH----------------NDNWMVSGDDGGAIK 139 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~s~----------------~~~~L~sg~~dg~V~ 139 (643)
+..|++++.++.|.-.|.++++.+-.+...... .+.+.+.. ++++|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456888888899999999999887776533211 12233321 245788899999999
Q ss_pred EEECCCCceEEeecCCCCCeE-------------EEEEec--CCCEEEEEeC----------CCcEEEEECCCCeeeeEe
Q 006497 140 YWQNNMNNVKANKSAHKESVR-------------DLSFCR--TDLKFCSCSD----------DTTVKVWDFARCQEERSL 194 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~~~I~-------------~l~~s~--d~~~l~s~s~----------dg~I~iwdl~~~~~~~~~ 194 (643)
-.|.++++.+..+.. .+.|. .+.-.+ .+..+++++. +|.|+-+|+++++.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988866532 11110 000011 1234555532 688999999999888766
Q ss_pred ecc---------CC--------Ce-EEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCceeEEecc
Q 006497 195 TGH---------GW--------DV-KSVDWHPTKSLLVSGG------------------KDSLVKLWDAKSGRELCSFHG 238 (643)
Q Consensus 195 ~~~---------~~--------~V-~~l~~sp~~~~l~sgs------------------~dg~I~iwD~~~~~~~~~~~~ 238 (643)
... .+ .+ ..++++++..+++... ..+.|.-.|+++++....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 00 11 2345555555554432 124577778889988877754
Q ss_pred CCCcE---------EEEEEcC-CCC---EEEEEECCCcEEEEECCCCeEEEEee
Q 006497 239 HKNMV---------LCVKWNQ-NGN---WVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 239 ~~~~i---------~~l~~sp-~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
....+ .-+.+.. +|+ .|+.++.+|.+.++|.++++.+...+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 22111 1122322 453 78899999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0096 Score=66.64 Aligned_cols=216 Identities=12% Similarity=0.164 Sum_probs=114.2
Q ss_pred cCCCCEEEEEECCC------cEEEEeCCCCceEEEEcc-CCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Q 006497 81 TPTGRRLITGSQSG------EFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDG------GAIKYWQNNMNN 147 (643)
Q Consensus 81 spdg~~L~tgs~dg------~I~iwd~~~~~~~~~l~~-h~~~V~~l~~s~~~~~L~sg~~d------g~V~iwd~~~~~ 147 (643)
+..+.++++|+.++ .+..||..+.+......- ......+++.. ++.+.++|+.| .++..||..+++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 33455677777663 577888777643322221 22223344444 45788888888 346777777665
Q ss_pred eEEee--cCCCCCeEEEEEecCCCEEEEEeCCC-----cEEEEECCCCeeeeE--eeccCCCeEEEEEcCCCCEEEEEEC
Q 006497 148 VKANK--SAHKESVRDLSFCRTDLKFCSCSDDT-----TVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 148 ~~~~~--~~~~~~I~~l~~s~d~~~l~s~s~dg-----~I~iwdl~~~~~~~~--~~~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
-...- ........ ++. -++...|+|+.|| +|..||.++.+-... .......+..+.+ ++.+.++|+.
T Consensus 361 W~~~a~M~~~R~~~~-v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~ 436 (571)
T KOG4441|consen 361 WTPVAPMNTKRSDFG-VAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGG 436 (571)
T ss_pred eeccCCccCccccce-eEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCc
Confidence 33211 11111111 111 2677788888885 477788765432221 1111122222233 5777788875
Q ss_pred CC------cEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeE--EEEeecCCC
Q 006497 219 DS------LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKE--LESFRGHRK 283 (643)
Q Consensus 219 dg------~I~iwD~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~--~~~~~~~~~ 283 (643)
|+ ++..||..+++... .+...........+ ++.+.++|+.|+ +|..||..+.+. +........
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs 514 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS 514 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc
Confidence 54 47788887664322 22222222222222 566777777665 377788766443 322332333
Q ss_pred CeEEEEEecCCCCEEEEEeCCCc
Q 006497 284 DVTALAWHPFHEEYFVSGSLDGS 306 (643)
Q Consensus 284 ~I~~l~~sp~~~~~l~sgs~dg~ 306 (643)
.+..+.+ ++.+.++|+.||.
T Consensus 515 ~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 515 AVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred cccEEEE---CCEEEEEecccCc
Confidence 3333333 6788888887753
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0049 Score=64.96 Aligned_cols=142 Identities=14% Similarity=0.159 Sum_probs=97.8
Q ss_pred CCCEEE-EEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCE-------EEEEECCCcEEEEECCCCeE--EEEe
Q 006497 209 TKSLLV-SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW-------VLTASKDQIIKLYDIRAMKE--LESF 278 (643)
Q Consensus 209 ~~~~l~-sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~-------l~s~s~dg~I~iwd~~~~~~--~~~~ 278 (643)
+.++|+ .+.....|+-.|++.|+.+..++-+.. |+-+.+.++.+. -++|-.|..|.-||.|-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 445556789999999999999986665 777788775432 34566788899999873221 2211
Q ss_pred ec----CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEe
Q 006497 279 RG----HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 279 ~~----~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd 354 (643)
.. ......|.+-. +..+|++|+.+|.|++||- ........+.+....|..+..+.||++|+..+ +..+.+-+
T Consensus 423 q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred eccccccccccceeeec--CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 21 12344555544 5789999999999999997 44444455556778999999999999888766 45565555
Q ss_pred c
Q 006497 355 R 355 (643)
Q Consensus 355 ~ 355 (643)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.26 Score=51.91 Aligned_cols=221 Identities=9% Similarity=0.035 Sum_probs=104.4
Q ss_pred CCCEEEEEe-CCCcEEEEECCCC----ceEEeecC---CC----CCeEEEEEecCCCEEEEEeC------CCcEEEEECC
Q 006497 125 NDNWMVSGD-DGGAIKYWQNNMN----NVKANKSA---HK----ESVRDLSFCRTDLKFCSCSD------DTTVKVWDFA 186 (643)
Q Consensus 125 ~~~~L~sg~-~dg~V~iwd~~~~----~~~~~~~~---~~----~~I~~l~~s~d~~~l~s~s~------dg~I~iwdl~ 186 (643)
+.++|++.+ .++.|+|.|+.+. ++.+.+.. +. ..-..+...++++.++++-. -|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 346777666 6788999998743 33443321 11 12223344568888777522 2568888888
Q ss_pred CCeeeeEeeccC---CCeEEEEEcCCCCEEEEEE--------------------CCCcEEEEECCCCceeEEeccCCC--
Q 006497 187 RCQEERSLTGHG---WDVKSVDWHPTKSLLVSGG--------------------KDSLVKLWDAKSGRELCSFHGHKN-- 241 (643)
Q Consensus 187 ~~~~~~~~~~~~---~~V~~l~~sp~~~~l~sgs--------------------~dg~I~iwD~~~~~~~~~~~~~~~-- 241 (643)
+.+.+....... ..-.++-|.+..+.+++.. ...+|.+||+++.+.++++.--..
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 776666655322 2345778888888888764 235799999999999998864332
Q ss_pred cEEEEEEcC--CCCEEEE-EECCCcEEEEEC-CCCeE----EEEeecC-----------------CCCeEEEEEecCCCC
Q 006497 242 MVLCVKWNQ--NGNWVLT-ASKDQIIKLYDI-RAMKE----LESFRGH-----------------RKDVTALAWHPFHEE 296 (643)
Q Consensus 242 ~i~~l~~sp--~g~~l~s-~s~dg~I~iwd~-~~~~~----~~~~~~~-----------------~~~I~~l~~sp~~~~ 296 (643)
....|.|.. +..+=++ +....+|..|-- +.++- +.++... ..-|+.|.+|-++..
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 355677754 3444333 334445555433 33321 2222110 234789999985544
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEec---c---------------cCcceEEEEEcCCCCEEEEEE
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHN---V---------------HDNTVWDLAWHPIGYLLCSGS 345 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~---~---------------h~~~V~~l~~s~d~~~L~sgs 345 (643)
+.+++-.+|.|+.||+.+.......-. + -.+...-+..|-||+.|+..+
T Consensus 326 LYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 555666789999999987654333211 1 011235678888998887765
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.016 Score=64.97 Aligned_cols=209 Identities=6% Similarity=0.026 Sum_probs=101.5
Q ss_pred cEEEEECCCCceEEeecCCCCC-eEEEEEecCCCEEEEEeCC------CcEEEEECCCCeeee--EeeccCCCeEEEEEc
Q 006497 137 AIKYWQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEER--SLTGHGWDVKSVDWH 207 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~~~~~-I~~l~~s~d~~~l~s~s~d------g~I~iwdl~~~~~~~--~~~~~~~~V~~l~~s 207 (643)
.+..||..+++....-...... -.+++. -++..+++|+.+ ..+..||..+..-.. .+.........+.+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~- 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI- 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE-
Confidence 4677887766533221111111 112232 256666777643 347788886654321 11111112222222
Q ss_pred CCCCEEEEEECCC-----cEEEEECCCCceeE--EeccCCCcEEEEEEcCCCCEEEEEECCC------------------
Q 006497 208 PTKSLLVSGGKDS-----LVKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ------------------ 262 (643)
Q Consensus 208 p~~~~l~sgs~dg-----~I~iwD~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg------------------ 262 (643)
++++.+.|+.++ ++..||.++.+-.. .+.........+++ ++++.++|+.++
T Consensus 351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence 577778887654 48889988653221 11111111222222 566666776542
Q ss_pred -----cEEEEECCCCeE--EEEeecCCCCeEEEEEecCCCCEEEEEeCCC------cEEEEECCC-Ccce-EEEecccCc
Q 006497 263 -----IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDG------SIFHWLVGH-ETPQ-VEIHNVHDN 327 (643)
Q Consensus 263 -----~I~iwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg------~I~iwd~~~-~~~~-~~~~~~h~~ 327 (643)
.+..||.++.+- +..+....... +++.. ++.+.+.|+.++ .|..||.++ ..-. .........
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGTIRP-GVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCcccccC-cEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 477788765443 22222111111 22222 567777776542 356788765 2211 111111122
Q ss_pred ceEEEEEcCCCCEEEEEECCC--eEEEEec
Q 006497 328 TVWDLAWHPIGYLLCSGSNDH--TTKFWCR 355 (643)
Q Consensus 328 ~V~~l~~s~d~~~L~sgs~Dg--~V~iWd~ 355 (643)
....+++ ++++.++|+.|+ .+..||.
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 2222333 678888999888 5555655
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0062 Score=69.50 Aligned_cols=141 Identities=13% Similarity=0.145 Sum_probs=88.2
Q ss_pred CeEEEEEecCCCEEEE--EeCCCcEEEEECCCCeeee-----Ee------eccCCCeEEEEEcCCC-CEEEEEECCCcEE
Q 006497 158 SVRDLSFCRTDLKFCS--CSDDTTVKVWDFARCQEER-----SL------TGHGWDVKSVDWHPTK-SLLVSGGKDSLVK 223 (643)
Q Consensus 158 ~I~~l~~s~d~~~l~s--~s~dg~I~iwdl~~~~~~~-----~~------~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~ 223 (643)
.|..+....|....++ .+++-.|..||+++..... -+ ........++.|+|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 4555666667655433 3344588999996543222 11 1122345678888753 2456677889998
Q ss_pred EEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee---c-CCCCeEEEEEecCCCCEEE
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---G-HRKDVTALAWHPFHEEYFV 299 (643)
Q Consensus 224 iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~---~-~~~~I~~l~~sp~~~~~l~ 299 (643)
+..+........--.....++|++|++.|+.+++|...|++.-|.-. .+....+. . ....|.+|+|.. ...+++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~-t~eflv 259 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLS-TQEFLV 259 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEec-ceeEEE
Confidence 88776433222222245678999999999999999999999888743 33333332 1 246799999987 444444
Q ss_pred E
Q 006497 300 S 300 (643)
Q Consensus 300 s 300 (643)
+
T Consensus 260 v 260 (1405)
T KOG3630|consen 260 V 260 (1405)
T ss_pred E
Confidence 3
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=72.61 Aligned_cols=101 Identities=11% Similarity=0.220 Sum_probs=74.7
Q ss_pred CCCEEEEEECCCcEEEEeCCCC-ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEE
Q 006497 83 TGRRLITGSQSGEFTLWNGQSF-NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRD 161 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~ 161 (643)
.+..++.|++.|.|...|.... +....-..-.++|++++|+.+|++++.|-.+|.|.+||...++..+.+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 4567888998999988886542 111222234578999999999999999999999999999999988888777666555
Q ss_pred EE---EecCCCEEEEEeCCCcEEEEEC
Q 006497 162 LS---FCRTDLKFCSCSDDTTVKVWDF 185 (643)
Q Consensus 162 l~---~s~d~~~l~s~s~dg~I~iwdl 185 (643)
+- +..++..+++++..|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 43 4445566777777776 5554
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.34 Score=51.45 Aligned_cols=197 Identities=9% Similarity=0.048 Sum_probs=111.8
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCceEEEEccCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCC-C
Q 006497 81 TPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD--HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHK-E 157 (643)
Q Consensus 81 spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~--~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~-~ 157 (643)
.-|+ .++++..+|.|.-.|.++++.+-....-. ..+.+-.+..+|+ |++++.++.+..+|..+++.+....... .
T Consensus 66 ~~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 66 DGDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eeCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 3344 46666788888888888877553332221 2222323333555 7788888988888988888877765544 1
Q ss_pred CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccC---CCeEEEEEcCCCCEEEEEEC--CCcEEEEECCCCce
Q 006497 158 SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGK--DSLVKLWDAKSGRE 232 (643)
Q Consensus 158 ~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~---~~V~~l~~sp~~~~l~sgs~--dg~I~iwD~~~~~~ 232 (643)
.+..-.+..++ .+...+.++.+...|.++++.+....... ..+..-... ....++.+.. ++.+.-.|.+++..
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~ 221 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTL 221 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcE
Confidence 12222222233 34444467888888888877766644321 111111111 2334555555 56777788888877
Q ss_pred eEEecc----CCCcEEEE-EEcC----CCCEEEEEECCCcEEEEECCCCeEEEEeecC
Q 006497 233 LCSFHG----HKNMVLCV-KWNQ----NGNWVLTASKDQIIKLYDIRAMKELESFRGH 281 (643)
Q Consensus 233 ~~~~~~----~~~~i~~l-~~sp----~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 281 (643)
+...+. ....+... .+.. .+..++.++.++.+...|..+++.+.++...
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 665321 11111001 1100 1223456677888999999999998888754
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.071 Score=61.42 Aligned_cols=195 Identities=12% Similarity=0.117 Sum_probs=116.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCceEEeecCCCCC--------eEEEEEec----------------CCCEEEEEeCCCcEE
Q 006497 126 DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES--------VRDLSFCR----------------TDLKFCSCSDDTTVK 181 (643)
Q Consensus 126 ~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~--------I~~l~~s~----------------d~~~l~s~s~dg~I~ 181 (643)
++.|++++.++.|.-.|.++++.+-.+...... .+.+++.. .+..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 567888888889999999998887766432211 12233321 234788888999999
Q ss_pred EEECCCCeeeeEeeccCCCeE-------------EEEEcC--CCCEEEEEEC----------CCcEEEEECCCCceeEEe
Q 006497 182 VWDFARCQEERSLTGHGWDVK-------------SVDWHP--TKSLLVSGGK----------DSLVKLWDAKSGRELCSF 236 (643)
Q Consensus 182 iwdl~~~~~~~~~~~~~~~V~-------------~l~~sp--~~~~l~sgs~----------dg~I~iwD~~~~~~~~~~ 236 (643)
-.|.++++.+..+... ..|. .+.-.| .+..+++++. +|.|+-+|+++++.+..+
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999888765421 1110 001111 1345666643 688999999999998876
Q ss_pred ccC---------CCc--------E-EEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCeEEEEeec
Q 006497 237 HGH---------KNM--------V-LCVKWNQNGNWVLTAS------------------KDQIIKLYDIRAMKELESFRG 280 (643)
Q Consensus 237 ~~~---------~~~--------i-~~l~~sp~g~~l~s~s------------------~dg~I~iwd~~~~~~~~~~~~ 280 (643)
..- .+. + ...+++++..+++... ..+.|.-.|+++++....++.
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 421 000 1 2234444444444322 124566677788888777764
Q ss_pred CCCCeEE---------EEEecCCC---CEEEEEeCCCcEEEEECCCCcceEEE
Q 006497 281 HRKDVTA---------LAWHPFHE---EYFVSGSLDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 281 ~~~~I~~---------l~~sp~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~ 321 (643)
....+.+ +.+...++ ..++.++.+|.++++|.++++.+...
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 3322221 11211123 27788888888888888777765543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.022 Score=63.82 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=114.6
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCeee
Q 006497 125 NDNWMVSGDDGG------AIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEE 191 (643)
Q Consensus 125 ~~~~L~sg~~dg------~V~iwd~~~~~~~~~~~~-~~~~I~~l~~s~d~~~l~s~s~d------g~I~iwdl~~~~~~ 191 (643)
.+.++++|+.++ .|..+|..++.-.....- ....-.++++. ++...++|+.| .++..||..+.+-.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 355667777663 577888777643332211 22223344444 55677888887 36778887665532
Q ss_pred e--EeeccCCCeEEEEEcCCCCEEEEEECCCc-----EEEEECCCCceeE--EeccCCCcEEEEEEcCCCCEEEEEECCC
Q 006497 192 R--SLTGHGWDVKSVDWHPTKSLLVSGGKDSL-----VKLWDAKSGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ 262 (643)
Q Consensus 192 ~--~~~~~~~~V~~l~~sp~~~~l~sgs~dg~-----I~iwD~~~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg 262 (643)
. .+...........+ +|.+.++|+.||. |..||.++.+--. .........-.+.+ ++.+.++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDG 438 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCC
Confidence 2 11112222222222 5788899998874 7788887654322 12111122222222 577777777554
Q ss_pred ------cEEEEECCCCeE--EEEeecCCCCeEEEEEecCCCCEEEEEeCCCc-----EEEEECCCCcceEEEec-ccCcc
Q 006497 263 ------IIKLYDIRAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLDGS-----IFHWLVGHETPQVEIHN-VHDNT 328 (643)
Q Consensus 263 ------~I~iwd~~~~~~--~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~-----I~iwd~~~~~~~~~~~~-~h~~~ 328 (643)
.+..||-.+.+. +..+........ ++.. ++.+++.|+.|+. |..||..+.+-...... .....
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccce-EEEE--CCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 567788765443 333332222223 3332 6888888888763 66677755543322211 11222
Q ss_pred eEEEEEcCCCCEEEEEECCCe
Q 006497 329 VWDLAWHPIGYLLCSGSNDHT 349 (643)
Q Consensus 329 V~~l~~s~d~~~L~sgs~Dg~ 349 (643)
+....+ ++++.++|+.||.
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred ccEEEE--CCEEEEEecccCc
Confidence 222333 4677778887764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.23 Score=49.18 Aligned_cols=270 Identities=9% Similarity=-0.015 Sum_probs=148.9
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---
Q 006497 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--- 147 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~--- 147 (643)
+-+..+.++ ++++..+..+.-++|.|+.+-..-..+..- .+--.++.. .|++..++..|.-+.+.|+.+..
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 345566666 456777777778999998875433332222 233344444 58899999866667888876543
Q ss_pred eEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee--ccCCCeEEEEEcCCCCEEEEEECCCcEEEE
Q 006497 148 VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225 (643)
Q Consensus 148 ~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~--~~~~~V~~l~~sp~~~~l~sgs~dg~I~iw 225 (643)
+.............++++ |++-..+..|+-+.|.|+.....-..+. .....+.++..+++-.+++. .+.-+.+-
T Consensus 163 lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y~egvliv 238 (370)
T COG5276 163 LAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--YDEGVLIV 238 (370)
T ss_pred eeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--cccceEEE
Confidence 344444444445667765 5577777889999999996644322221 12336778887755444443 33447788
Q ss_pred ECCCCceeEEeccC-CCcEEEE-EEcCCCCEEEEEECCCcEEEEECCCCeE--E-EEeecCCCCeEEEEEecCCCCEEEE
Q 006497 226 DAKSGRELCSFHGH-KNMVLCV-KWNQNGNWVLTASKDQIIKLYDIRAMKE--L-ESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 226 D~~~~~~~~~~~~~-~~~i~~l-~~sp~g~~l~s~s~dg~I~iwd~~~~~~--~-~~~~~~~~~I~~l~~sp~~~~~l~s 300 (643)
|..+.+....+... ...+.++ .+.-.+++...+..+..+.+-|+.+-.. + ..+......-..+..+ ++++..
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yi 315 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYI 315 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEe
Confidence 88776644444221 1222222 2223467777777777777888764221 1 1111111122233332 344444
Q ss_pred EeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEec
Q 006497 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~ 355 (643)
+..+ +..+-+....+..-+... ....+.+.+.+-+.+.+.+...++.+.||+.
T Consensus 316 adkn-~g~vV~~s~~s~m~~~~g-~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 316 ADKN-TGAVVDASPPSMMDKRPG-RPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred ccCC-ceEEEeCCChhhcccccC-cceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 4444 444445433322111111 1112333333334568888899999999985
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=49.64 Aligned_cols=101 Identities=14% Similarity=0.203 Sum_probs=70.3
Q ss_pred eEEEEEcC---CC-CEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 006497 201 VKSVDWHP---TK-SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 276 (643)
Q Consensus 201 V~~l~~sp---~~-~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 276 (643)
|++|++.. |+ +.|++|++|..|++|+-. +.+..+. ..+.|++++-... ..++.+..+|+|-+|+- ...+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 55666543 33 589999999999999854 5566665 4456888877655 67889999999999985 34455
Q ss_pred EeecCCCCeEEEEEecCC---CCEEEEEeCCCcEE
Q 006497 277 SFRGHRKDVTALAWHPFH---EEYFVSGSLDGSIF 308 (643)
Q Consensus 277 ~~~~~~~~I~~l~~sp~~---~~~l~sgs~dg~I~ 308 (643)
.++ .+..++++++...+ ..-|++|-.+|.|-
T Consensus 76 RiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 555 34447777665422 23688888888774
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0072 Score=63.74 Aligned_cols=142 Identities=12% Similarity=0.155 Sum_probs=97.6
Q ss_pred CCCEEE-EEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCE-------EEEEeCCCcEEEEECCCCee--eeEe
Q 006497 125 NDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-------FCSCSDDTTVKVWDFARCQE--ERSL 194 (643)
Q Consensus 125 ~~~~L~-sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~-------l~s~s~dg~I~iwdl~~~~~--~~~~ 194 (643)
+.++|+ ++.....|+-.|++.++++...+.+.. |.-+.+.++.+. -+.|-.|+.|.-||.+-... +...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 455566788889999999999887766 777777776432 23456688899999863322 2122
Q ss_pred ecc----CCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 195 TGH----GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 195 ~~~----~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
..| .....|++-..+ .+|++|+.+|.|++||--..+....+.+....|..|..+.+|++|++.+ +..|.+.|+
T Consensus 423 q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 234566665544 4799999999999999733333445667788999999999999988766 456666665
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0015 Score=70.06 Aligned_cols=94 Identities=17% Similarity=0.261 Sum_probs=81.6
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeE-EEEEecCCCCEEEEEeCCCcEEEEECCCCcce
Q 006497 240 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 318 (643)
Q Consensus 240 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~-~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~ 318 (643)
...|.-+.|+|.-.+||.+..+|.|.++.+. .+.+.++..+...++ +++|.+ ++++|+.|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 3457889999999999999999999999988 889999988888887 999999 7999999999999999999988877
Q ss_pred EEEecccCcceEEEEEc
Q 006497 319 VEIHNVHDNTVWDLAWH 335 (643)
Q Consensus 319 ~~~~~~h~~~V~~l~~s 335 (643)
......-...|.++-|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 76444446678888886
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0037 Score=70.95 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCCcEEEEECCCCce-EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEE
Q 006497 125 NDNWMVSGDDGGAIKYWQNNMNNV-KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKS 203 (643)
Q Consensus 125 ~~~~L~sg~~dg~V~iwd~~~~~~-~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~ 203 (643)
.+..++.|+..|.|...|...+-. ...-......|++++|+.++..++.|-.+|.|.+||+.+.+.++.+..+..+.+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 456788999999999988765421 1222345678999999999999999999999999999998888888877665444
Q ss_pred ---EEEcCCCCEEEEEECCCcEEEEEC
Q 006497 204 ---VDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 204 ---l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
+.+..++..++++...|. +|.+
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 445556667888877775 5543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.54 Score=50.23 Aligned_cols=264 Identities=11% Similarity=0.096 Sum_probs=140.7
Q ss_pred CCEEEEEECCCcEEEEeCCCCc-----eEEEEccCCCCEEEEEEcC----CC-CEEEEEeCCCcEEEEECCCC--c----
Q 006497 84 GRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSH----ND-NWMVSGDDGGAIKYWQNNMN--N---- 147 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~l~~s~----~~-~~L~sg~~dg~V~iwd~~~~--~---- 147 (643)
...|++|+.+|.++||+-...+ .+.+ ..-..+|..|+.-. .. ..||+ -.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4689999999999999865433 1111 12356777776532 12 33443 55567788875211 1
Q ss_pred ---eEEeecCCC--CCeEEEEEec----C-CCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEE
Q 006497 148 ---VKANKSAHK--ESVRDLSFCR----T-DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 148 ---~~~~~~~~~--~~I~~l~~s~----d-~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs 217 (643)
.+.....|. .....+++-+ . ...|++-+.||.+.+|+-+.....+.+.. .---..+++.+..+.|++++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 111112222 2222333322 1 35688889999999999766544444433 22334678888888899999
Q ss_pred CCCcEEEEECCCC--------------------cee---EEeccCCCc---EEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 218 KDSLVKLWDAKSG--------------------REL---CSFHGHKNM---VLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 218 ~dg~I~iwD~~~~--------------------~~~---~~~~~~~~~---i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
.+..|..|....- +.+ .++. -... |..+.++.....|++-+ +..+.+.+. +
T Consensus 194 ss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~-~ 270 (418)
T PF14727_consen 194 SSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKD-N 270 (418)
T ss_pred CceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEe-cceEEEEcC-C
Confidence 8888888865210 100 1111 1112 23333333333444444 345655554 3
Q ss_pred CeEEEEeecCCCCeEEEE-Ee------cCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEE---EcCCCCEE
Q 006497 272 MKELESFRGHRKDVTALA-WH------PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA---WHPIGYLL 341 (643)
Q Consensus 272 ~~~~~~~~~~~~~I~~l~-~s------p~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~---~s~d~~~L 341 (643)
|+.....+. +..-.|++ +. +.....++.++.++.+.||.-. +..+.....| .+ .++. |..-...|
T Consensus 271 G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~-~P-Val~v~~~~~~~G~I 345 (418)
T PF14727_consen 271 GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPH-VP-VALSVANFNGLKGLI 345 (418)
T ss_pred CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCC-CC-EEEEecccCCCCceE
Confidence 544333332 22222221 11 1112258888889999998642 2222222222 12 2333 33335688
Q ss_pred EEEECCCeEEEEecCCC
Q 006497 342 CSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 342 ~sgs~Dg~V~iWd~~~~ 358 (643)
++-+.||.|.+-=+.++
T Consensus 346 V~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 346 VSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EEEcCCCcEEEEEeCCC
Confidence 99999999988766543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0015 Score=42.81 Aligned_cols=38 Identities=26% Similarity=0.598 Sum_probs=33.7
Q ss_pred ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
+.+..+..|...|+++.|.++++++++++.|+.|++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778899999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.1 Score=52.25 Aligned_cols=144 Identities=13% Similarity=0.155 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCEEEEEE---CCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCceE
Q 006497 74 SINRVLWTPTGRRLITGS---QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVK 149 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs---~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd-~~~~~~~ 149 (643)
.+.+.++++|++.+|... ....++++.... ....+. ....+..-.|++++...++...+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 334455555432 222221 234788889999987777777677777774 2333222
Q ss_pred E-eec--CCCCCeEEEEEecCCCEEEEEe---CCCcEEEEECCCCee---------eeEeeccCCCeEEEEEcCCCCEEE
Q 006497 150 A-NKS--AHKESVRDLSFCRTDLKFCSCS---DDTTVKVWDFARCQE---------ERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 150 ~-~~~--~~~~~I~~l~~s~d~~~l~s~s---~dg~I~iwdl~~~~~---------~~~~~~~~~~V~~l~~sp~~~~l~ 214 (643)
. ... .....|..+.+++|+..++... .++.|.|--+..... ..........+.+++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1 111 1122899999999999877665 357777765532111 111222346789999999888777
Q ss_pred EEECCC
Q 006497 215 SGGKDS 220 (643)
Q Consensus 215 sgs~dg 220 (643)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.24 Score=51.82 Aligned_cols=152 Identities=9% Similarity=0.032 Sum_probs=85.1
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEE-ECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCcee
Q 006497 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVW-DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233 (643)
Q Consensus 155 ~~~~I~~l~~s~d~~~l~s~s~dg~I~iw-dl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~ 233 (643)
....+.++.+.+++.++++ +..|.+..- |-....-..........++++.+.++++.++++ ..|.+++=+.+.++.-
T Consensus 171 ~~g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 171 AAGVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred CcceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 3567889999888765554 445655432 222111222222344678999999888876665 5576654334444433
Q ss_pred EEecc----CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee---cCCCCeEEEEEecCCCCEEEEEeCCCc
Q 006497 234 CSFHG----HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGS 306 (643)
Q Consensus 234 ~~~~~----~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~~I~~l~~sp~~~~~l~sgs~dg~ 306 (643)
..... ....+..+.+.+++..++ ++.+|.|. .....++.-.... ......+.+.+.. +++. +..+..|.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~~~-~~~G~~G~ 324 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PEKG-FVLGQRGV 324 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CCce-EEECCCce
Confidence 32221 123478889988776555 44566554 3444344333222 2224577777775 4444 44556788
Q ss_pred EEEEEC
Q 006497 307 IFHWLV 312 (643)
Q Consensus 307 I~iwd~ 312 (643)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 877764
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.4 Score=47.51 Aligned_cols=193 Identities=8% Similarity=0.023 Sum_probs=117.7
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecC--CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 190 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~--~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~ 190 (643)
-.+-+..+.++ +++...+..+.-++|.|+.+-+.-..+.. ..+.-.++. -.|++..++..|.-+.+.|+.+...
T Consensus 85 ~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~--vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 85 ARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVY--VSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEE--ecCCEEEEeeccCcEEEEECCCCCC
Confidence 34556677776 55777788888899999887654333221 113333333 3677888888787888899865432
Q ss_pred ---eeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe--ccCCCcEEEEEEcCCCCEEEEEECCCcEE
Q 006497 191 ---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIK 265 (643)
Q Consensus 191 ---~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~I~ 265 (643)
...+.........++++ |++-..+..|+-+.|.|+.+...-..+ ......+.++..+++..+++.. +--+.
T Consensus 161 P~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvl 236 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVL 236 (370)
T ss_pred ceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceE
Confidence 23333344445677776 778888889999999999865432211 1123367888887665555554 33477
Q ss_pred EEECCCCeEEEEeec--CCC--CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 266 LYDIRAMKELESFRG--HRK--DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 266 iwd~~~~~~~~~~~~--~~~--~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
+-|..+-+....+.. ... .++.+.+ .+++......+.-+.+-|+.+..
T Consensus 237 ivd~s~~ssp~~~gsyet~~p~~~s~v~V---s~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 237 IVDVSGPSSPTVFGSYETSNPVSISTVPV---SGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred EEecCCCCCceEeeccccCCcccccceec---ccceeeeeccccCceeEeccCCC
Confidence 778776554333321 111 2333344 35666666667677777776543
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.47 Score=47.46 Aligned_cols=217 Identities=14% Similarity=0.209 Sum_probs=123.3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCC-------CCceEEEEcc-----CCCCEEEEEEcCCCC------------EEE
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQ-------SFNFEMILQA-----HDHAIRSMVWSHNDN------------WMV 130 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~-------~~~~~~~l~~-----h~~~V~~l~~s~~~~------------~L~ 130 (643)
-..|+++|.+.+-++....+...+||.. ...++..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 4678999999877777778899999986 1223333331 234677787764322 367
Q ss_pred EEeCCCcEEEEECCCCce-----EEeec-CC-CCCeEEEEEecC--CCEEEEEe-CCCcEEEEECCCCeee--eEeecc-
Q 006497 131 SGDDGGAIKYWQNNMNNV-----KANKS-AH-KESVRDLSFCRT--DLKFCSCS-DDTTVKVWDFARCQEE--RSLTGH- 197 (643)
Q Consensus 131 sg~~dg~V~iwd~~~~~~-----~~~~~-~~-~~~I~~l~~s~d--~~~l~s~s-~dg~I~iwdl~~~~~~--~~~~~~- 197 (643)
.+++||+|.-|.-..... ...+. .. ...-+.+++... +.+|..+. .+++|.|||-.-.+.. ..+...
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~ 184 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA 184 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence 789999999997432211 11121 11 222344555533 45555443 4788999985322111 001100
Q ss_pred ---C-C--CeEEE------E---EcCCCCEEEEEECCCcEEEEECCCCceeEEec--cCCCcEEEEEEcC------CCCE
Q 006497 198 ---G-W--DVKSV------D---WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--GHKNMVLCVKWNQ------NGNW 254 (643)
Q Consensus 198 ---~-~--~V~~l------~---~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~--~~~~~i~~l~~sp------~g~~ 254 (643)
. . .|..| . -.++.+.=+.+..-|.|-+||+. ++.++++. +.-+.-+.|+..| .+.+
T Consensus 185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l 263 (336)
T TIGR03118 185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL 263 (336)
T ss_pred CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence 0 0 01111 1 11111112223334689999987 67777663 2233456666654 4566
Q ss_pred EEEEECCCcEEEEECCCCeEEEEeecCCC------CeEEEEEec
Q 006497 255 VLTASKDQIIKLYDIRAMKELESFRGHRK------DVTALAWHP 292 (643)
Q Consensus 255 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~I~~l~~sp 292 (643)
|+--..||+|..||..+++.+-.+..... .++.|+|-.
T Consensus 264 LVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 264 LVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred EEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77666899999999999998877765433 345666643
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.24 Score=49.49 Aligned_cols=144 Identities=10% Similarity=-0.007 Sum_probs=88.5
Q ss_pred CEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEE-CCCCee-
Q 006497 116 AIRSMVWSHNDNWMVSGD---DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD-FARCQE- 190 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~---~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd-l~~~~~- 190 (643)
.+.+.+++++++.++... ....|+++... ....... ....+..-.|.+++...+....+...+++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999998877665 33345555433 2222221 334788889999987777766666666663 222222
Q ss_pred eeEeecc--CCCeEEEEEcCCCCEEEEEE---CCCcEEEEECC---CC------ceeEEeccCCCcEEEEEEcCCCCEEE
Q 006497 191 ERSLTGH--GWDVKSVDWHPTKSLLVSGG---KDSLVKLWDAK---SG------RELCSFHGHKNMVLCVKWNQNGNWVL 256 (643)
Q Consensus 191 ~~~~~~~--~~~V~~l~~sp~~~~l~sgs---~dg~I~iwD~~---~~------~~~~~~~~~~~~i~~l~~sp~g~~l~ 256 (643)
...+... ...|..+.+++||..++... .++.|.+--+. .+ ..+.........++.++|..++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 1222211 12799999999999887766 34667766443 22 11112223346789999999988777
Q ss_pred EEECCC
Q 006497 257 TASKDQ 262 (643)
Q Consensus 257 s~s~dg 262 (643)
.+...+
T Consensus 182 ~~~~~~ 187 (253)
T PF10647_consen 182 LGRSAG 187 (253)
T ss_pred EeCCCC
Confidence 665443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0021 Score=42.00 Aligned_cols=35 Identities=26% Similarity=0.641 Sum_probs=31.5
Q ss_pred EeecCCCCCeEEEEEcCCCCEEEEEECCCcEEEEe
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWN 100 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd 100 (643)
..+..|...|++++|+++++++++++.|+.+++||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44567889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.31 Score=51.73 Aligned_cols=142 Identities=12% Similarity=0.118 Sum_probs=77.6
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--eEEeecCCCCCeEEEEEecCCCEEEEEeCCC
Q 006497 115 HAIRSMVWSHNDNWMVSGD-----------DGG-AIKYWQNNM--NN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~-----------~dg-~V~iwd~~~--~~--~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg 178 (643)
.....|+|.++|+++++-. ..+ .|.+++-.. ++ ....+.........|++.+++ .++ ++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4556788888888776642 223 677775432 22 122333334456788998888 444 44443
Q ss_pred cEEEEECCCC-----eeeeEee---c----cCCCeEEEEEcCCCCEEEEEECC-------------------CcEEEEEC
Q 006497 179 TVKVWDFARC-----QEERSLT---G----HGWDVKSVDWHPTKSLLVSGGKD-------------------SLVKLWDA 227 (643)
Q Consensus 179 ~I~iwdl~~~-----~~~~~~~---~----~~~~V~~l~~sp~~~~l~sgs~d-------------------g~I~iwD~ 227 (643)
.+++.|.+.. +....+. . +......++|.+|+.+.++.+.. +.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334354221 1111122 1 12347789999999876654421 34555565
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCEEEEEE
Q 006497 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 228 ~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s 259 (643)
++++. ..+...-.....++|+++|+++++-.
T Consensus 172 dg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeE-EEEecCcCCCccceECCCCCEEEEcc
Confidence 54443 22322223357899999998876644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.031 Score=62.67 Aligned_cols=184 Identities=10% Similarity=0.120 Sum_probs=87.7
Q ss_pred CCCEEEEEECCC------cEEEEeCCCCceEEEEcc--CCCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceE
Q 006497 83 TGRRLITGSQSG------EFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDG-----GAIKYWQNNMNNVK 149 (643)
Q Consensus 83 dg~~L~tgs~dg------~I~iwd~~~~~~~~~l~~--h~~~V~~l~~s~~~~~L~sg~~d-----g~V~iwd~~~~~~~ 149 (643)
++..++.|+.++ .+..||..+.+....-.- .......+. -++++++.|+.+ ..+..||..+++-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666542 577788776554322111 111122222 256777788765 34777887765433
Q ss_pred EeecC-CCCCeEEEEEecCCCEEEEEeCC------CcEEEEECCCCeeeeEe--eccCCCeEEEEEcCCCCEEEEEECC-
Q 006497 150 ANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGGKD- 219 (643)
Q Consensus 150 ~~~~~-~~~~I~~l~~s~d~~~l~s~s~d------g~I~iwdl~~~~~~~~~--~~~~~~V~~l~~sp~~~~l~sgs~d- 219 (643)
..-.. ....-.+++. -+++.++.|+.+ ..+.+||..+.+-...- ....... +++.. ++.+++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIYH-DGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEEE-CCEEEEECCccC
Confidence 22111 1111112222 255666666632 46888998765432211 1111111 22222 45666666543
Q ss_pred -------CcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCEEEEEECC-----CcEEEEECCCCe
Q 006497 220 -------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAMK 273 (643)
Q Consensus 220 -------g~I~iwD~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~d-----g~I~iwd~~~~~ 273 (643)
..+.+||.++++-... +.........+.+ ++++++.|+.+ ..|.+||.++.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 2388899886543221 1111111122222 56666666643 357777766543
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.61 Score=50.59 Aligned_cols=148 Identities=10% Similarity=0.179 Sum_probs=87.0
Q ss_pred CCeEEEEEcCCCCEEEEEE--CCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCC----CCEEEEEeCCCcEEEEECC--
Q 006497 73 CSINRVLWTPTGRRLITGS--QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN----DNWMVSGDDGGAIKYWQNN-- 144 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs--~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~----~~~L~sg~~dg~V~iwd~~-- 144 (643)
.+|..++|......+++.- .+|++++=|.. .+ +.-+.|..+.|.|- .-.|++.-....|.||.+.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~---vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK---VI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc---Ee----eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 3688899984444444432 34444433321 22 33457899999884 3245556667889999864
Q ss_pred ---CCceEEeecC-CCC----CeEEEEEecCCCEEEEEeCCCcEEEEECC--CCeeeeEeeccCCCeEEEEEcCCCCEEE
Q 006497 145 ---MNNVKANKSA-HKE----SVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 145 ---~~~~~~~~~~-~~~----~I~~l~~s~d~~~l~s~s~dg~I~iwdl~--~~~~~~~~~~~~~~V~~l~~sp~~~~l~ 214 (643)
.++....... ..+ --..+.|+|....|++-.....-.++++. +......++ ..+.|.|.+|..||+.|+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~-~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK-TSGLIHCACWTKDGQRLV 171 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc-CCceEEEEEecCcCCEEE
Confidence 2222222111 111 12346799988887776655544555553 333333443 566899999999999887
Q ss_pred EEECC-CcEEEEECC
Q 006497 215 SGGKD-SLVKLWDAK 228 (643)
Q Consensus 215 sgs~d-g~I~iwD~~ 228 (643)
++-.. =.-+|||-.
T Consensus 172 VAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSA 186 (671)
T ss_pred EEeCCeEEEEEecCc
Confidence 76443 345788753
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.83 Score=47.68 Aligned_cols=231 Identities=15% Similarity=0.171 Sum_probs=117.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---EEee----cCCCCCeEEEEEecC---CCEEEEEeCC--------
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV---KANK----SAHKESVRDLSFCRT---DLKFCSCSDD-------- 177 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~---~~~~----~~~~~~I~~l~~s~d---~~~l~s~s~d-------- 177 (643)
.-+.|+|.+|+++|+ +...|.|++++ ..+.. +..+ .........++++++ +.+|.+....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 457899999987666 56699999999 33332 2222 234456789999984 3344333321
Q ss_pred -CcEEEEECCCC-------eeee-Eeec---cCCCeEEEEEcCCCCEEEEEECCCc-------------EEEEECCCCc-
Q 006497 178 -TTVKVWDFARC-------QEER-SLTG---HGWDVKSVDWHPTKSLLVSGGKDSL-------------VKLWDAKSGR- 231 (643)
Q Consensus 178 -g~I~iwdl~~~-------~~~~-~~~~---~~~~V~~l~~sp~~~~l~sgs~dg~-------------I~iwD~~~~~- 231 (643)
..|.-|.+... +.+. .+.. .......|+|.+|+.+.++.+..+. |.-.|.. ++
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d-G~~ 159 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPD-GSI 159 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETT-SSB
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEeccc-CcC
Confidence 24555554332 1111 1111 2334677999999976666654332 3223322 11
Q ss_pred ------------eeEEe-ccCCCcEEEEEEcCC-CCEEEEE-ECCCcEEEEECCCCe-----------------------
Q 006497 232 ------------ELCSF-HGHKNMVLCVKWNQN-GNWVLTA-SKDQIIKLYDIRAMK----------------------- 273 (643)
Q Consensus 232 ------------~~~~~-~~~~~~i~~l~~sp~-g~~l~s~-s~dg~I~iwd~~~~~----------------------- 273 (643)
....+ .++. ....++|++. ++++++= +.|..=.|.-++.+.
T Consensus 160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 00011 1122 2467899997 5544332 122222222222211
Q ss_pred ------EEEEeecCCCCeEEEEEecC------CCCEEEEEeCCCcEEEEECCCCcceE---EEecccCcceEEEEEcCCC
Q 006497 274 ------ELESFRGHRKDVTALAWHPF------HEEYFVSGSLDGSIFHWLVGHETPQV---EIHNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 274 ------~~~~~~~~~~~I~~l~~sp~------~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~s~d~ 338 (643)
.+..+. +...+..+.|... .+.+|++.-..+.|...+++...... .+.......+.++++.+||
T Consensus 239 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG 317 (331)
T PF07995_consen 239 CPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG 317 (331)
T ss_dssp -TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred CCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence 112222 2345666676641 34466666666788877776443322 2333344579999999999
Q ss_pred CEEEEEECCCeEE
Q 006497 339 YLLCSGSNDHTTK 351 (643)
Q Consensus 339 ~~L~sgs~Dg~V~ 351 (643)
.++++.+.+|.|.
T Consensus 318 ~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 318 ALYVSDDSDGKIY 330 (331)
T ss_dssp EEEEEE-TTTTEE
T ss_pred eEEEEECCCCeEe
Confidence 9988888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.13 Score=55.10 Aligned_cols=270 Identities=11% Similarity=0.022 Sum_probs=139.0
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCC-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
...|.++.++.+|. |.+|+.|| +..||..+++....-.... .+|+.+..+-.+ .|.+|+.+| |++.+.+..+...
T Consensus 164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 45688888888774 77788887 6677777777665544333 566666655454 577788777 6777665532222
Q ss_pred ee-cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEe-ec--cCCCeEEEEEcCCCCEEEEEECCCcEEEEE
Q 006497 151 NK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-TG--HGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 151 ~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~-~~--~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD 226 (643)
.. ......|..+.-..++. +-.++++|..+ ..+.+....... +. .-+.|.++..+.+++ |-+++.++.+++-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~-lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGs-LWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGE-LWIGTENGLWR-TRLPRQGLQIPLSKMHLGVSTVNSLWLDTDGS-LWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCC-EEEeeccccee-EecCCCCccccccccCCccccccceeeccCCC-EeeeccCceEEEec
Confidence 11 12233444444333333 44455554332 233332222111 11 123566777666665 66677777666544
Q ss_pred CCCCceeEEeccCCCc-EEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecCCCCEEEEEe
Q 006497 227 AKSGRELCSFHGHKNM-VLCVKWNQ--NGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 227 ~~~~~~~~~~~~~~~~-i~~l~~sp--~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
.. .+....+...++. +..++..+ .+..+-....-|.+.+-+-.++..+.... .....|+.+++.. +..+..++
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~--~g~lWlgs 393 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDS--RGRLWLGS 393 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccccccchhhhcc--CCcEEEEe
Confidence 32 2222222211111 11111111 22222233333444555555555554432 2335566666665 33444455
Q ss_pred CCCcEEEEECCC-CcceEEEecccCcceEEEEEcCCCCEEEEEECCCeEEE
Q 006497 303 LDGSIFHWLVGH-ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKF 352 (643)
Q Consensus 303 ~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~i 352 (643)
...-+..|+.++ .....+......+.|..+.=.++++ |..|+.+|.++.
T Consensus 394 ~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 394 MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred cccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 554455566655 2222222233456788888888887 777888886653
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.13 Score=56.97 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=8.6
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 006497 593 GPQMYPQGGAFNRPQGQM 610 (643)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~ 610 (643)
||++||++--|+.++|.+
T Consensus 691 ~~~~m~P~~~~~g~pg~~ 708 (894)
T KOG0132|consen 691 GMRHMPPPPSHRGGPGGH 708 (894)
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 555555554444444433
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.63 Score=44.64 Aligned_cols=206 Identities=11% Similarity=0.099 Sum_probs=112.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC---CEEEEEeCCCcEEEEECCC--CeeeeEee-----c
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD---LKFCSCSDDTTVKVWDFAR--CQEERSLT-----G 196 (643)
Q Consensus 127 ~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~---~~l~s~s~dg~I~iwdl~~--~~~~~~~~-----~ 196 (643)
.+|.+--..+.|.-||...++....... ...+..+.+--.+ .+.+.++..-.|.-||... ....+++. .
T Consensus 28 sLl~VDi~ag~v~r~D~~qn~v~ra~ie-~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 28 SLLYVDIEAGEVHRYDIEQNKVYRAKIE-GPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred eEEEEEeccCceehhhhhhhheEEEEEe-cCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 4555555567777798887665543321 1223333332222 2233333333444566322 12222211 1
Q ss_pred cCCCeEEEEEcCCCCEEEEEECC---------CcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEE-EECCCcEEE
Q 006497 197 HGWDVKSVDWHPTKSLLVSGGKD---------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT-ASKDQIIKL 266 (643)
Q Consensus 197 ~~~~V~~l~~sp~~~~l~sgs~d---------g~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s-~s~dg~I~i 266 (643)
.....++-..+|+|++++-.-.| |.++.|-.. ..+..+...-.--+.++|+.+.+.+.. -+.+-.|.-
T Consensus 107 kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred HhcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehhccCCccccccccCcEEEEEccCceEEee
Confidence 23456677788999984432222 334444432 222222223333467889887776654 445667777
Q ss_pred EE--CCCCe-----EEEEeecC---CC-CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEc
Q 006497 267 YD--IRAMK-----ELESFRGH---RK-DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 335 (643)
Q Consensus 267 wd--~~~~~-----~~~~~~~~---~~-~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 335 (643)
|| ..++. .+..++.. .. .--.+++.. ++++++++-..++|...|..+++.+.++.-. ...|+++||-
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFg 262 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFG 262 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEec
Confidence 87 44443 33333321 11 122344454 6888888888999999999999888777654 6789999996
Q ss_pred CC
Q 006497 336 PI 337 (643)
Q Consensus 336 ~d 337 (643)
-.
T Consensus 263 Gk 264 (310)
T KOG4499|consen 263 GK 264 (310)
T ss_pred CC
Confidence 43
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.034 Score=63.76 Aligned_cols=144 Identities=13% Similarity=0.088 Sum_probs=89.2
Q ss_pred CeEEEEEcCCCCEEEEEE--CCCcEEEEECCCCceeE-----Eec------cCCCcEEEEEEcCCC-CEEEEEECCCcEE
Q 006497 200 DVKSVDWHPTKSLLVSGG--KDSLVKLWDAKSGRELC-----SFH------GHKNMVLCVKWNQNG-NWVLTASKDQIIK 265 (643)
Q Consensus 200 ~V~~l~~sp~~~~l~sgs--~dg~I~iwD~~~~~~~~-----~~~------~~~~~i~~l~~sp~g-~~l~s~s~dg~I~ 265 (643)
.|..+...+|....++.. .+-.|+.||+++-..-. -+. .......++.|+|.- ...+++..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 455555666766544443 33478899998532211 111 122346788888843 2356667788888
Q ss_pred EEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC--cceEEEecccCcceEEEEEcCCCCEEEE
Q 006497 266 LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE--TPQVEIHNVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 266 iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~d~~~L~s 343 (643)
+..+........--......++++|++ .++.++.|-..|++.-|...-. ..+-+........|.+|+|-....+|++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 887754333222223556789999999 8999999999999988875433 1111111112468999999877766665
Q ss_pred E
Q 006497 344 G 344 (643)
Q Consensus 344 g 344 (643)
-
T Consensus 261 y 261 (1405)
T KOG3630|consen 261 Y 261 (1405)
T ss_pred e
Confidence 4
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.067 Score=59.93 Aligned_cols=181 Identities=12% Similarity=0.118 Sum_probs=85.2
Q ss_pred CCCEEEEEeCCC------cEEEEECCCCceEEeecCC--CCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCeee
Q 006497 125 NDNWMVSGDDGG------AIKYWQNNMNNVKANKSAH--KESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQEE 191 (643)
Q Consensus 125 ~~~~L~sg~~dg------~V~iwd~~~~~~~~~~~~~--~~~I~~l~~s~d~~~l~s~s~d-----g~I~iwdl~~~~~~ 191 (643)
++.+++.|+.++ .+..||..+.+....-... ..... ++ .-+++.++.|+.+ ..+.+||..+.+-.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~-~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPG-VT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccce-EE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 456677776542 4677887766543321111 11122 22 2256677777754 35778887664322
Q ss_pred eE--eeccCCCeEEEEEcCCCCEEEEEECC------CcEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCEEEEEECC
Q 006497 192 RS--LTGHGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 192 ~~--~~~~~~~V~~l~~sp~~~~l~sgs~d------g~I~iwD~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~d 261 (643)
.. +....... +++. -++++++.|+.+ ..+..||..+.+-... +....... +++. -++.+++.|+.+
T Consensus 372 ~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~~~-~~~~iyv~GG~~ 447 (534)
T PHA03098 372 EEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CAIY-HDGKIYVIGGIS 447 (534)
T ss_pred eCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eEEE-ECCEEEEECCcc
Confidence 11 11111111 2222 256666777632 3588899886543221 11111111 2222 245556666532
Q ss_pred --------CcEEEEECCCCeEEE--EeecCCCCeEEEEEecCCCCEEEEEeCC-----CcEEEEECCC
Q 006497 262 --------QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLD-----GSIFHWLVGH 314 (643)
Q Consensus 262 --------g~I~iwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~~l~sgs~d-----g~I~iwd~~~ 314 (643)
..+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..|.+||.++
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF---NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE---CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 238888887654322 11111111122222 46666666654 3456666543
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.11 Score=48.76 Aligned_cols=174 Identities=10% Similarity=0.083 Sum_probs=99.0
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeeeEeeccCCCe
Q 006497 125 NDNWMVSGDD--GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTGHGWDV 201 (643)
Q Consensus 125 ~~~~L~sg~~--dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l-~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V 201 (643)
++.++.+.+. ...|++||+++++.+.........+..=-...-+.++ +..-.|+.-.++|.++.+++..+. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4556666554 3469999999888776654332222211111122232 233457888899998888776665 33344
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc--CC---CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 006497 202 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG--HK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE 276 (643)
Q Consensus 202 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~--~~---~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~ 276 (643)
..++- |++.|+.++...+++.-|.++...+.++.- .. ..++.+.|- ||...+-.-.+..|...|..+++.+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 55553 556677777777788888776544333321 11 123334443 45555544444556666666666655
Q ss_pred Eee------------cCCCCeEEEEEecCCCCEEEEEe
Q 006497 277 SFR------------GHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 277 ~~~------------~~~~~I~~l~~sp~~~~~l~sgs 302 (643)
.+. .+..-.+.+++.+..++++++|-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 443 23345678888886667777763
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.84 Score=48.41 Aligned_cols=143 Identities=5% Similarity=0.034 Sum_probs=80.8
Q ss_pred CCeEEEEEcCCCCEEEEEE-----------CCC-cEEEEeCCC--Cce--EEEEccCCCCEEEEEEcCCCCEEEEEeCCC
Q 006497 73 CSINRVLWTPTGRRLITGS-----------QSG-EFTLWNGQS--FNF--EMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs-----------~dg-~I~iwd~~~--~~~--~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg 136 (643)
.....|+|.++|+++++-. ..+ .|.+++..+ ++. ...+.......+.+++.+++ |++++...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeCCCe
Confidence 3577899999998766643 223 677776432 332 23333334456889998887 44445444
Q ss_pred cEEEEECCCC-----ce--E-EeecC----CCCCeEEEEEecCCCEEEEEeCC-------------------CcEEEEEC
Q 006497 137 AIKYWQNNMN-----NV--K-ANKSA----HKESVRDLSFCRTDLKFCSCSDD-------------------TTVKVWDF 185 (643)
Q Consensus 137 ~V~iwd~~~~-----~~--~-~~~~~----~~~~I~~l~~s~d~~~l~s~s~d-------------------g~I~iwdl 185 (643)
.+++.|.+.. +. + ..+.. +......++|.+|+.+.++.+.. +.|..+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 3334454321 11 1 11211 13447789999999876654421 34555665
Q ss_pred CCCeeeeEeeccCCCeEEEEEcCCCCEEEEEEC
Q 006497 186 ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 186 ~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~ 218 (643)
+..+.. .+.........++|+++++++++-..
T Consensus 172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred CCCeEE-EEecCcCCCccceECCCCCEEEEccC
Confidence 554432 22222334568999999988766443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=2.7 Score=49.21 Aligned_cols=232 Identities=9% Similarity=0.030 Sum_probs=124.8
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCce---------EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---C-
Q 006497 79 LWTPTGRRLITGSQSGEFTLWNGQSFNF---------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN---M- 145 (643)
Q Consensus 79 ~~spdg~~L~tgs~dg~I~iwd~~~~~~---------~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~---~- 145 (643)
.+-++...+++.+.+|.|+--+..+... ...++. .+.+..+......+.|+..+..|.+...... .
T Consensus 493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~ 571 (805)
T PRK05560 493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKE-DDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEA 571 (805)
T ss_pred hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCC-CCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCC
Confidence 4455677889999999998886544221 111222 2344444444556667777778887766432 1
Q ss_pred -----CceE---EeecCCCCCeEEEEEec--CCCEEEEEeCCCcEEEEECCCCe-------eeeEeeccCCCeEEEEEcC
Q 006497 146 -----NNVK---ANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQ-------EERSLTGHGWDVKSVDWHP 208 (643)
Q Consensus 146 -----~~~~---~~~~~~~~~I~~l~~s~--d~~~l~s~s~dg~I~iwdl~~~~-------~~~~~~~~~~~V~~l~~sp 208 (643)
|..+ ..+.....-|.++.+.. +...++..+.+|.++..++.... ....++. .+.+..+....
T Consensus 572 ~~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~ 650 (805)
T PRK05560 572 SRTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTD 650 (805)
T ss_pred CcCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeC
Confidence 1111 11222223344444442 56788999999999988764322 2222332 34454444444
Q ss_pred CCCEEEEEECCCcEEEEECCC---------CceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCC-------
Q 006497 209 TKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAM------- 272 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~---------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~------- 272 (643)
....|+..+..|.+..+.+.. |..+..+...+.-+..+.+..++.+++..+..|.++...+...
T Consensus 651 ~~d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~ 730 (805)
T PRK05560 651 GDDDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGG 730 (805)
T ss_pred CCCEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCC
Confidence 556677778888777665532 1222233322222333444444447888888898887765321
Q ss_pred eEEEEe--ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 273 KELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 273 ~~~~~~--~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
+-+..+ ......+..+.... ++..++..+.+|.+..++..
T Consensus 731 kG~~~lkl~~~~d~lv~v~~v~-~~~~v~i~T~~G~~lrf~~~ 772 (805)
T PRK05560 731 KGVITIKITEKNGKLVGALPVD-DDDEIMLITDSGKLIRTRVS 772 (805)
T ss_pred CcEEeeeccCCCCeEEEEEEec-CCCeEEEEecCCeEEEEEHH
Confidence 112222 22223443333333 34445566677877777664
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=1.7 Score=46.41 Aligned_cols=145 Identities=8% Similarity=0.101 Sum_probs=78.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCce--eEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCe-----
Q 006497 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----- 273 (643)
Q Consensus 201 V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~--~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~----- 273 (643)
...+..++++.+++++.....++-||- +.. ...-......+..+.|..++.+++++ .+|.+. |....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~ 316 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF 316 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence 344556677776666554332333442 222 11112234568899999888877665 556543 3333333
Q ss_pred EEEEeec--CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEe--cccCcceEEEEEcCCCCEEEEEECCCe
Q 006497 274 ELESFRG--HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH--NVHDNTVWDLAWHPIGYLLCSGSNDHT 349 (643)
Q Consensus 274 ~~~~~~~--~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~d~~~L~sgs~Dg~ 349 (643)
...+... ....+.++.+.. ++. +++++.+|.|....- .++.-.... ..-...++.+.|..+++.++ .+.+|.
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~-d~~-~~a~G~~G~v~~s~D-~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~ 392 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRS-KKE-AWAAGGSGILLRSTD-GGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGV 392 (398)
T ss_pred ceeecccCCCCcceEEEEEcC-CCc-EEEEECCCcEEEeCC-CCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcE
Confidence 2222222 223588888885 444 455556787766542 222211211 12234688999876665554 557888
Q ss_pred EEEE
Q 006497 350 TKFW 353 (643)
Q Consensus 350 V~iW 353 (643)
|.-|
T Consensus 393 il~~ 396 (398)
T PLN00033 393 LLRY 396 (398)
T ss_pred EEEe
Confidence 7665
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.85 Score=52.35 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=55.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 115 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM-NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~-~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
-.|..|.++++|++|+..+..|. .|..+-. ......+......|.|-.+.=+..++
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 46888899999999998888664 4443321 11111222223333333222111111
Q ss_pred eeccCCCeEEEEEcCC---CCEEEEEECCCcEEEEECCCCc
Q 006497 194 LTGHGWDVKSVDWHPT---KSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~---~~~l~sgs~dg~I~iwD~~~~~ 231 (643)
.......|..+.|+|. +..|++-+.|++||+||+...+
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 1113346788899986 4788888999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.33 E-value=3 Score=48.31 Aligned_cols=93 Identities=15% Similarity=0.160 Sum_probs=51.6
Q ss_pred CCcEEEEEC-CCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEeccc-CcceEEEEEcCCC
Q 006497 261 DQIIKLYDI-RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVH-DNTVWDLAWHPIG 338 (643)
Q Consensus 261 dg~I~iwd~-~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~d~ 338 (643)
+|.++.|++ ++++.+.-+....-.-.-.+.++..+ ++++| ....+++||+.+.+.+.+....+ ...|+.++|. +
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~ 986 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGAICPFQG-RVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--G 986 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceEEeccCC-EEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEeec--c
Confidence 344666665 33443333322222222345556444 44443 34599999998766554433322 4567777775 5
Q ss_pred CEEEEEECCCeEEEEecCC
Q 006497 339 YLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 339 ~~L~sgs~Dg~V~iWd~~~ 357 (643)
..|++|...-.|.++..++
T Consensus 987 ~RI~VgD~qeSV~~~~y~~ 1005 (1205)
T KOG1898|consen 987 ARIVVGDIQESVHFVRYRR 1005 (1205)
T ss_pred eEEEEeeccceEEEEEEec
Confidence 6777777766677666544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.41 Score=53.19 Aligned_cols=194 Identities=10% Similarity=0.100 Sum_probs=106.8
Q ss_pred CcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe---ecCCCCCeEEEEEecCCCE
Q 006497 94 GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLK 170 (643)
Q Consensus 94 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~---~~~~~~~I~~l~~s~d~~~ 170 (643)
-.|+||+.. |..+..+......+..+.|+.+ ..|++...||+++||++-....... .......|..+.+..+|
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G-- 139 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG-- 139 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--
Confidence 458888865 4455554444558889999966 5677788999999999754332221 12233446666555554
Q ss_pred EEEEeCCCcEEEEECCCCeeeeEeec-cCCCe--EEEEEcCCCC---EEEEEE-CCCcEEEEECCCC-ceeEEeccCCCc
Q 006497 171 FCSCSDDTTVKVWDFARCQEERSLTG-HGWDV--KSVDWHPTKS---LLVSGG-KDSLVKLWDAKSG-RELCSFHGHKNM 242 (643)
Q Consensus 171 l~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~V--~~l~~sp~~~---~l~sgs-~dg~I~iwD~~~~-~~~~~~~~~~~~ 242 (643)
+++-..+|.|.+.+-.....++++.. ..... .|.....++. .|+-.. ..+ ..++-..+. .....+......
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~ 218 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSS 218 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCce
Confidence 44444556665554333223333322 11111 2222222221 111111 111 112222211 122223333456
Q ss_pred EEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCC-CeEEEEEec
Q 006497 243 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK-DVTALAWHP 292 (643)
Q Consensus 243 i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~I~~l~~sp 292 (643)
+..+..|++.++|+.-..+|.|.+-+++..+++.++..... .-..++|.-
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 88899999999999999999999999988888877763322 223677764
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.30 E-value=1.8 Score=45.26 Aligned_cols=231 Identities=13% Similarity=0.187 Sum_probs=117.3
Q ss_pred CeEEEEEcCCCCEEEEEECCCcEEEEeCCCCce---EEEE----ccCCCCEEEEEEcCC---CCEEEEEeCC--------
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---EMIL----QAHDHAIRSMVWSHN---DNWMVSGDDG-------- 135 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~---~~~l----~~h~~~V~~l~~s~~---~~~L~sg~~d-------- 135 (643)
.-+.|+|.|||++|+ +...|.|++++ .++.. +..+ .........++++++ +.+|++....
T Consensus 3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357899999987555 56699999999 33333 2222 223567899999984 3444443331
Q ss_pred -CcEEEEECCCC-------c-eEEeec---CCCCCeEEEEEecCCCEEEEEeCC-------------CcEEEEECCCCe-
Q 006497 136 -GAIKYWQNNMN-------N-VKANKS---AHKESVRDLSFCRTDLKFCSCSDD-------------TTVKVWDFARCQ- 189 (643)
Q Consensus 136 -g~V~iwd~~~~-------~-~~~~~~---~~~~~I~~l~~s~d~~~l~s~s~d-------------g~I~iwdl~~~~- 189 (643)
..|.-|..... + ++..+. ........|+|.+|+.++++.+.. |.|.-.+....-
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444443332 1 111111 233456679999999776665543 233333332110
Q ss_pred -----------eeeEeeccCCCeEEEEEcCC-CCEEEEE-ECCCcEEEEECCCCc-------------------------
Q 006497 190 -----------EERSLTGHGWDVKSVDWHPT-KSLLVSG-GKDSLVKLWDAKSGR------------------------- 231 (643)
Q Consensus 190 -----------~~~~~~~~~~~V~~l~~sp~-~~~l~sg-s~dg~I~iwD~~~~~------------------------- 231 (643)
....+..--.....++|++. ++++++- +.|..=.|.-++.+.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSCP 240 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-T
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCCC
Confidence 00111111123457899998 5444332 222222222222111
Q ss_pred ----eeEEeccCCCcEEEEEEcC-------CCCEEEEEECCCcEEEEECCCCeEEEE---e-ecCCCCeEEEEEecCCCC
Q 006497 232 ----ELCSFHGHKNMVLCVKWNQ-------NGNWVLTASKDQIIKLYDIRAMKELES---F-RGHRKDVTALAWHPFHEE 296 (643)
Q Consensus 232 ----~~~~~~~~~~~i~~l~~sp-------~g~~l~s~s~dg~I~iwd~~~~~~~~~---~-~~~~~~I~~l~~sp~~~~ 296 (643)
.+..+. +...+..+.|.. .+.+|++.-..+.|...+++....+.. + ......+..+++.+ ++.
T Consensus 241 ~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p-DG~ 318 (331)
T PF07995_consen 241 GFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP-DGA 318 (331)
T ss_dssp TS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-TSE
T ss_pred CcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-CCe
Confidence 122233 234567777764 345566555567888888875543322 2 23344799999999 788
Q ss_pred EEEEEeCCCcEE
Q 006497 297 YFVSGSLDGSIF 308 (643)
Q Consensus 297 ~l~sgs~dg~I~ 308 (643)
++++.+.+|.|+
T Consensus 319 Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEE-TTTTEE
T ss_pred EEEEECCCCeEe
Confidence 888877888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.00084 Score=74.36 Aligned_cols=131 Identities=9% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCcEEEEeCCCCc-eEEEEccCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC--Cce-----EEeecCCCCCeEEEE
Q 006497 93 SGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHN-DNWMVSGDDGGAIKYWQNNM--NNV-----KANKSAHKESVRDLS 163 (643)
Q Consensus 93 dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~s~~-~~~L~sg~~dg~V~iwd~~~--~~~-----~~~~~~~~~~I~~l~ 163 (643)
++-|++-|..+.- ....+++..+.|-.+.|... ...++ ..-|.+.|||++. +++ +.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4557777655422 12335567788888888542 22222 3347788998653 332 222233344455566
Q ss_pred Eec---CCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEE-----------cCCCCEEEEEECCCcEEEEE
Q 006497 164 FCR---TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW-----------HPTKSLLVSGGKDSLVKLWD 226 (643)
Q Consensus 164 ~s~---d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~-----------sp~~~~l~sgs~dg~I~iwD 226 (643)
|++ +..+++.+..+++|++.++++... ..+..|...+..++| ++||..|++++.||.+++|.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 665 556677777788888888765433 334446666655544 44444444444444444443
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=96.25 E-value=1.1 Score=46.97 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=33.0
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeeee--Eeec---cCCC-eEEEEEcCCCCEEEEEECC-----------CcEEE
Q 006497 167 TDLKFCSCSDD-----TTVKVWDFARCQEER--SLTG---HGWD-VKSVDWHPTKSLLVSGGKD-----------SLVKL 224 (643)
Q Consensus 167 d~~~l~s~s~d-----g~I~iwdl~~~~~~~--~~~~---~~~~-V~~l~~sp~~~~l~sgs~d-----------g~I~i 224 (643)
++++++.|+.+ ..+.+||+++.+-.. .+.. .... -.+++.. ++++++.|+.+ ..|.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEEE
Confidence 45566666543 357888987654322 1100 0111 1223332 45666776643 24778
Q ss_pred EECCCCc
Q 006497 225 WDAKSGR 231 (643)
Q Consensus 225 wD~~~~~ 231 (643)
||.++.+
T Consensus 164 yd~~~~~ 170 (341)
T PLN02153 164 YNIADGK 170 (341)
T ss_pred EECCCCe
Confidence 8988654
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=2.1 Score=45.67 Aligned_cols=146 Identities=9% Similarity=0.066 Sum_probs=78.2
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCc-----ee
Q 006497 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-----EL 233 (643)
Q Consensus 159 I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~-----~~ 233 (643)
...+..++|+.+++.+.....++-||-....-...-......+..+.|..++.+++++ .+|.|. |....++ ..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f 318 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDF 318 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccce
Confidence 3445566677666555433333334432211011122234568899999888876655 556553 3444443 22
Q ss_pred EEecc--CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEe---ecCCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 006497 234 CSFHG--HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF---RGHRKDVTALAWHPFHEEYFVSGSLDGSIF 308 (643)
Q Consensus 234 ~~~~~--~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~ 308 (643)
..+.. ....+..+.|..++..++ ++.+|.+.+.. ..++.-... ..-...++.+.|.. +++.+ +.+.+|.|.
T Consensus 319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~-~~~g~-~~G~~G~il 394 (398)
T PLN00033 319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFD-DKKGF-VLGNDGVLL 394 (398)
T ss_pred eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcC-CCceE-EEeCCcEEE
Confidence 22221 223588899987776554 55677665553 334432222 22345678888875 34444 445678876
Q ss_pred EE
Q 006497 309 HW 310 (643)
Q Consensus 309 iw 310 (643)
.|
T Consensus 395 ~~ 396 (398)
T PLN00033 395 RY 396 (398)
T ss_pred Ee
Confidence 55
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=2.2 Score=45.26 Aligned_cols=192 Identities=13% Similarity=-0.028 Sum_probs=109.1
Q ss_pred CEEEEEeCCCcEEEEECCCCceEEeecCC--CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccC-CCeEE
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAH--KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHG-WDVKS 203 (643)
Q Consensus 127 ~~L~sg~~dg~V~iwd~~~~~~~~~~~~~--~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~-~~V~~ 203 (643)
..++++..+|.|.-.|.++++.+...... ...+..-.+..+++ |+.++.++.++.+|.++++.+....... ..+..
T Consensus 69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred CeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 45666688888888888888765433222 12333333333555 7778888999999998888887777555 11222
Q ss_pred EEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCC---CcEEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEe
Q 006497 204 VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESF 278 (643)
Q Consensus 204 l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~---~~i~~l~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~~ 278 (643)
-.+-.+ ..+..++.++.+...|..+++.+....... ..+..-... ....++.+.. ++.+.-+|.+++..+...
T Consensus 148 ~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 148 PPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEeeee
Confidence 222223 344444478999999999888876654322 111111111 2334555555 566777788888776663
Q ss_pred ec----CCCCe------EEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEec
Q 006497 279 RG----HRKDV------TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 279 ~~----~~~~I------~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 323 (643)
+. ....+ ..-... -+.-++.++.++.+...|..+...+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~v~--v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 226 KVSQTIGRTAISTTPAVDGGPVY--VDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred eeecccCcccccccccccCceEE--ECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 21 11111 100111 112235566677787888877776666554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.24 Score=54.57 Aligned_cols=181 Identities=13% Similarity=0.029 Sum_probs=84.6
Q ss_pred CCCEEEEEECCC-----cEEEEeCCCCceEEE--EccCCCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceEEeec
Q 006497 83 TGRRLITGSQSG-----EFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVSGDDG--GAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 83 dg~~L~tgs~dg-----~I~iwd~~~~~~~~~--l~~h~~~V~~l~~s~~~~~L~sg~~d--g~V~iwd~~~~~~~~~~~ 153 (643)
++.++++|+.++ .+..||..+.+.... +....... +++ .-++.+.++|+.+ ..+..||..+++-...-.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 345566776543 466788766543222 11111111 222 2356777777754 457888876554332211
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeeeE--eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 154 AHKESVRDLSFCRTDLKFCSCSDD---TTVKVWDFARCQEERS--LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~~l~s~s~d---g~I~iwdl~~~~~~~~--~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~ 228 (643)
-...........-+++..+.|+.+ ..+..||.++.+-... +.........+++ ++++.+.| |.+.+||.+
T Consensus 349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~ 423 (480)
T PHA02790 349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCES 423 (480)
T ss_pred CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCC
Confidence 111111111122366666777654 3577888766433221 1111111222222 45555555 457889987
Q ss_pred CCceeE--EeccCCCcEEEEEEcCCCCEEEEEECC-----CcEEEEECCCC
Q 006497 229 SGRELC--SFHGHKNMVLCVKWNQNGNWVLTASKD-----QIIKLYDIRAM 272 (643)
Q Consensus 229 ~~~~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~d-----g~I~iwd~~~~ 272 (643)
+++-.. .+.........+.+ ++++.++|+.+ ..|.+||..+.
T Consensus 424 ~~~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 424 SNTWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCcEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECCCC
Confidence 654322 12211222222322 56666677644 23555555443
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=96.10 E-value=3 Score=48.80 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCeEEEEEcCC-CCEEEEEECCCcEEEEECCCCc-----eeEEeccCC----------CcEEEEEEcCCCCEEEEEECC
Q 006497 198 GWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGR-----ELCSFHGHK----------NMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 198 ~~~V~~l~~sp~-~~~l~sgs~dg~I~iwD~~~~~-----~~~~~~~~~----------~~i~~l~~sp~g~~l~s~s~d 261 (643)
+....+++|+|. .+.||+.+..|...|||+.... .+....... +.-..|.|..+-+.|++++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r- 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR- 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence 446788999984 4589999999999999992111 111111111 22347889888888888764
Q ss_pred CcEEEEECCCCeEEE--EeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCC
Q 006497 262 QIIKLYDIRAMKELE--SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 262 g~I~iwd~~~~~~~~--~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~ 314 (643)
..+.++|+++..... ........|..+.-++.+..+++.-+. ..|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
Confidence 468999998766533 222345678888888754444444432 4676667765
|
These proteins are found in fungi. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.12 Score=55.83 Aligned_cols=149 Identities=14% Similarity=0.202 Sum_probs=91.6
Q ss_pred CCeEEEEEcCCCCEEEEEE---CCCcEEEEECCCCceeEEeccCCCcEEEEEEcCC----CCEEEEEECCCcEEEEECC-
Q 006497 199 WDVKSVDWHPTKSLLVSGG---KDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN----GNWVLTASKDQIIKLYDIR- 270 (643)
Q Consensus 199 ~~V~~l~~sp~~~~l~sgs---~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~----g~~l~s~s~dg~I~iwd~~- 270 (643)
..|..++|. ||+.++... .+|.+++=| .+.+..|+ .|..+.|.|- .-.|++.-....|.||.+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 367889998 666544332 344444433 23344443 4889999983 3245555567889999874
Q ss_pred ----CCeEEEEeecCC-C----CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEE
Q 006497 271 ----AMKELESFRGHR-K----DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341 (643)
Q Consensus 271 ----~~~~~~~~~~~~-~----~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L 341 (643)
+.+.+..-..+- . --..+.|+| ...+|++-.....-.++++......++..-...+.|.|.+|..||+.|
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RL 170 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRL 170 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEE
Confidence 223322221111 1 124678999 677777666665556778876666665555567889999999999877
Q ss_pred EEEE-CCCeEEEEecC
Q 006497 342 CSGS-NDHTTKFWCRN 356 (643)
Q Consensus 342 ~sgs-~Dg~V~iWd~~ 356 (643)
+++- ..=.-+|||-.
T Consensus 171 VVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 171 VVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEEeCCeEEEEEecCc
Confidence 7653 33345667643
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.4 Score=46.17 Aligned_cols=184 Identities=8% Similarity=0.034 Sum_probs=86.4
Q ss_pred CCCEEEEEECC-------CcEEEEeCCCCceEEEEcc---CCC---CEEEEEEcCCCCEEEEEeCC-----CcEEEEECC
Q 006497 83 TGRRLITGSQS-------GEFTLWNGQSFNFEMILQA---HDH---AIRSMVWSHNDNWMVSGDDG-----GAIKYWQNN 144 (643)
Q Consensus 83 dg~~L~tgs~d-------g~I~iwd~~~~~~~~~l~~---h~~---~V~~l~~s~~~~~L~sg~~d-----g~V~iwd~~ 144 (643)
++++++.|+.+ ..+.+||..+.+-...-.. ... ....+.+ ++++++.|+.+ ..|.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34555666542 3578888777543322110 010 1222222 45677777653 357788887
Q ss_pred CCceEEeecC-----CCCCeEEEEEecCCCEEEEEeCC-----------CcEEEEECCCCeeeeEeecc------CCCeE
Q 006497 145 MNNVKANKSA-----HKESVRDLSFCRTDLKFCSCSDD-----------TTVKVWDFARCQEERSLTGH------GWDVK 202 (643)
Q Consensus 145 ~~~~~~~~~~-----~~~~I~~l~~s~d~~~l~s~s~d-----------g~I~iwdl~~~~~~~~~~~~------~~~V~ 202 (643)
+.+-...-.. ........+..-+++.++.|+.+ ..|.+||.++.+-.. +... ....
T Consensus 110 t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~-l~~~~~~~~~r~~~- 187 (341)
T PLN02153 110 KNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQ-LPDPGENFEKRGGA- 187 (341)
T ss_pred CCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEee-CCCCCCCCCCCCcc-
Confidence 6543321110 11111112222355566666543 247788887653322 2111 1111
Q ss_pred EEEEcCCCCEEEEEECC-------------CcEEEEECCCCceeEEec-----cCCCcEEEEEEcCCCCEEEEEECC---
Q 006497 203 SVDWHPTKSLLVSGGKD-------------SLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTASKD--- 261 (643)
Q Consensus 203 ~l~~sp~~~~l~sgs~d-------------g~I~iwD~~~~~~~~~~~-----~~~~~i~~l~~sp~g~~l~s~s~d--- 261 (643)
+++.. ++++++.++.+ ..|.+||+.+.+-...-. .......++.+ ++++++.|+..
T Consensus 188 ~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~--~~~iyv~GG~~~~~ 264 (341)
T PLN02153 188 GFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV--GKYIIIFGGEVWPD 264 (341)
T ss_pred eEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE--CCEEEEECcccCCc
Confidence 22222 45665655432 458889988764332111 01111222222 45667777641
Q ss_pred -----------CcEEEEECCCCe
Q 006497 262 -----------QIIKLYDIRAMK 273 (643)
Q Consensus 262 -----------g~I~iwd~~~~~ 273 (643)
+.|..||..+.+
T Consensus 265 ~~~~~~~~~~~n~v~~~d~~~~~ 287 (341)
T PLN02153 265 LKGHLGPGTLSNEGYALDTETLV 287 (341)
T ss_pred cccccccccccccEEEEEcCccE
Confidence 257778876544
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=95.93 E-value=2.4 Score=43.56 Aligned_cols=228 Identities=10% Similarity=0.035 Sum_probs=109.7
Q ss_pred CCCEEEEEECCCcEEEEeCCC--CceEEEEccCCCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce-----------
Q 006497 83 TGRRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNV----------- 148 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~-~dg~V~iwd~~~~~~----------- 148 (643)
++++|+.|+++|...+. +.+ .+..+.+ +...|+++......+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 34689999999955444 554 3344433 467899999988777666544 344599998732221
Q ss_pred ----EEeecCCCCCeEEEEEecCC-CEEEEEeCCCcEEEEECCCC----eeeeEe---e-ccCCCeEEEEEcCC--CCEE
Q 006497 149 ----KANKSAHKESVRDLSFCRTD-LKFCSCSDDTTVKVWDFARC----QEERSL---T-GHGWDVKSVDWHPT--KSLL 213 (643)
Q Consensus 149 ----~~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I~iwdl~~~----~~~~~~---~-~~~~~V~~l~~sp~--~~~l 213 (643)
......+......+++.... ..++++....+|.++...+. ...+.+ . .....+..+..+.+ ...|
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 01112233323334444322 23344455667777654322 111110 0 01122333332322 4567
Q ss_pred EEEECCCcEEEEECCC--Ccee----EE-eccCC-CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EeecCCC
Q 006497 214 VSGGKDSLVKLWDAKS--GREL----CS-FHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE--SFRGHRK 283 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~--~~~~----~~-~~~~~-~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~~~ 283 (643)
++|+..+...++|+.. .... .. ..... ..+..+.+ .++.+|++ - |....+.|..-.+..+ .+. -..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~-w~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILH-WEF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE-E-CcEEEEEeCCCCccccceEEE-cCC
Confidence 7777653345555532 1100 00 01111 23333333 34444443 3 3344555554212211 222 334
Q ss_pred CeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEE
Q 006497 284 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 284 ~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 321 (643)
...++++. ..+|++-. +..|.++++.+......+
T Consensus 245 ~p~~~~~~---~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 245 MPESFAYH---SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cccEEEEE---CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 55677775 35555554 456999999877654444
|
Unpublished observations. |
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=95.91 E-value=5 Score=47.02 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=127.2
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCCce---------EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSFNF---------EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~---------~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~ 145 (643)
|..-++.++...+++.+.+|.|+-.+..+... ...++. .+.+..+......+.|+..+.+|.+...+...
T Consensus 487 i~~edli~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe-~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~ 565 (800)
T TIGR01063 487 IDIEDLIARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKD-DDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQ 565 (800)
T ss_pred cchhhccCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccCC-CCeeEEEEEecCCCeEEEEeCCCcEEEEEhhh
Confidence 33344556677788899999998886554321 111222 33444554555666777778888877665321
Q ss_pred ---------CceE---EeecCCCCCeEEEEEe--cCCCEEEEEeCCCcEEEEECCCCee-------eeEeeccCCCeEEE
Q 006497 146 ---------NNVK---ANKSAHKESVRDLSFC--RTDLKFCSCSDDTTVKVWDFARCQE-------ERSLTGHGWDVKSV 204 (643)
Q Consensus 146 ---------~~~~---~~~~~~~~~I~~l~~s--~d~~~l~s~s~dg~I~iwdl~~~~~-------~~~~~~~~~~V~~l 204 (643)
|..+ ..+.....-|.++.+. .++.+++..+.+|.++..++..... ...+.. .+.+..+
T Consensus 566 IP~~~r~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v 644 (800)
T TIGR01063 566 IPEASRTAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISV 644 (800)
T ss_pred CcCCCcCCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEE
Confidence 1111 1122222234444432 3456788999999999988744221 112222 3445444
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCC---------CceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC----
Q 006497 205 DWHPTKSLLVSGGKDSLVKLWDAKS---------GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA---- 271 (643)
Q Consensus 205 ~~sp~~~~l~sgs~dg~I~iwD~~~---------~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~---- 271 (643)
........|+..+..|.+..+.+.. |.....+. ....|.++....++.+|+..+..|.++...+..
T Consensus 645 ~~~~~~d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~~~~~ll~vT~~G~~Kr~~l~e~~~~ 723 (800)
T TIGR01063 645 RLTSGDDEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVSEESYLLIVTENGYGKRTSIEEYRET 723 (800)
T ss_pred EEeCCCCEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEeccccEEEEEecCCcEEEEEHHHcccc
Confidence 4444556677777888776665432 11222232 223455554444556788888899888876532
Q ss_pred ---CeEEEEe--ecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECC
Q 006497 272 ---MKELESF--RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 272 ---~~~~~~~--~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
++-+..+ ......+..+.... ++..++..+.+|.+..++..
T Consensus 724 ~R~~kGv~~ikl~~~~d~lv~~~~v~-~~~~v~liT~~G~~lrf~~~ 769 (800)
T TIGR01063 724 SRGGKGVKSIKITDRNGQVVGAIAVD-DDDELMLITSAGKLIRTSVQ 769 (800)
T ss_pred CCCCcceEEEEccCCCCeEEEEEEec-CCCeEEEEecCCeEEEeeHh
Confidence 1222222 22223444444443 33445666777777777654
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=95.87 E-value=3.6 Score=48.23 Aligned_cols=232 Identities=10% Similarity=-0.040 Sum_probs=125.6
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCce---------EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECC---C---
Q 006497 123 SHNDNWMVSGDDGGAIKYWQNNMNNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA---R--- 187 (643)
Q Consensus 123 s~~~~~L~sg~~dg~V~iwd~~~~~~---------~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~---~--- 187 (643)
..+...+++-+.+|.|+--++.+... ...++ ..+.+..+..+.....|+..+..|.+...... .
T Consensus 495 I~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~ 573 (805)
T PRK05560 495 IPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTK-EDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASR 573 (805)
T ss_pred cCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccC-CCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCc
Confidence 34567888889999998876543221 01111 23455566666666777777788887776542 1
Q ss_pred ---Ceee---eEeeccCCCeEEEEEcC--CCCEEEEEECCCcEEEEECCCC-------ceeEEeccCCCcEEEEEEcCCC
Q 006497 188 ---CQEE---RSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSG-------RELCSFHGHKNMVLCVKWNQNG 252 (643)
Q Consensus 188 ---~~~~---~~~~~~~~~V~~l~~sp--~~~~l~sgs~dg~I~iwD~~~~-------~~~~~~~~~~~~i~~l~~sp~g 252 (643)
+..+ ..+...+.-|.++.+.. +...++..+.+|.|+-.++..- .....++. .+.+..+......
T Consensus 574 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke-~D~lv~v~~~~~~ 652 (805)
T PRK05560 574 TARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE-GDELIGVRLTDGD 652 (805)
T ss_pred CCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC-CCEEEEEEEeCCC
Confidence 1111 11222233355555552 5678999999999987765432 22333442 3344444444455
Q ss_pred CEEEEEECCCcEEEEECCC---------CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC-------c
Q 006497 253 NWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T 316 (643)
Q Consensus 253 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~-------~ 316 (643)
..|+..+..|.+..+.+.. +..+..+.. ...|.++.....++.+++..+..|.++...+..- .
T Consensus 653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~-~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~k 731 (805)
T PRK05560 653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLRE-GDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGK 731 (805)
T ss_pred CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCC-CCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCC
Confidence 6677777788777666532 122223322 2334443333223346778888898887764211 1
Q ss_pred ceEEEe-cccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 317 PQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 317 ~~~~~~-~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
-...+. ....+.+..+....+...++..+.+|.+..++.+.
T Consensus 732 G~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 732 GVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred cEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 111111 11123444433333344566677788887777653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.3 Score=54.23 Aligned_cols=194 Identities=11% Similarity=0.151 Sum_probs=97.5
Q ss_pred cEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE-e--eccCCCeEEEEEcCCCCEE
Q 006497 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-L--TGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 137 ~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~-~--~~~~~~V~~l~~sp~~~~l 213 (643)
.|+|++.. |..+..+.-....+..+.|+.+. .|++...||+++||++-....... . ......|..+.+..+| +
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G--V 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG--V 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc--e
Confidence 47777754 44444443344478889998665 466678999999999843222111 1 2223345544444444 4
Q ss_pred EEEECCCcEEEEECCCCceeEEecc-CCCcEEEEEEc--CCC---CEEEEEE-CCCcEEEEECCCC-eEEEEeecCCCCe
Q 006497 214 VSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWN--QNG---NWVLTAS-KDQIIKLYDIRAM-KELESFRGHRKDV 285 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~~~~~~~~~-~~~~i~~l~~s--p~g---~~l~s~s-~dg~I~iwd~~~~-~~~~~~~~~~~~I 285 (643)
++-..+|.|.+-.-.+...++++.. ..+...+.+|. .++ ..|+-.. ..+ ..++-.... .....+......+
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceE
Confidence 4444455555443222222333221 11111112222 221 1111111 000 011111111 1122333334667
Q ss_pred EEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcC
Q 006497 286 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 286 ~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 336 (643)
..+.+|+ +..+|+--..+|.|.+-+.+.......+.......-..++|+-
T Consensus 220 ~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcg 269 (829)
T KOG2280|consen 220 VKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCG 269 (829)
T ss_pred EEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeec
Confidence 8889998 8899999999999988888766665555433233333566653
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.3 Score=46.01 Aligned_cols=105 Identities=9% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceE---EeecCCCCCe--EEEEEecCCCEEEEEeC-----CCcEEEEECCCCe
Q 006497 125 NDNWMVSGDDG-----GAIKYWQNNMNNVK---ANKSAHKESV--RDLSFCRTDLKFCSCSD-----DTTVKVWDFARCQ 189 (643)
Q Consensus 125 ~~~~L~sg~~d-----g~V~iwd~~~~~~~---~~~~~~~~~I--~~l~~s~d~~~l~s~s~-----dg~I~iwdl~~~~ 189 (643)
++++++.|+.+ ..+..+|+.+.+.. ..+..-.... .+++. -+++.++.++. ...+.+||+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 55677777754 34666676665431 1111111111 12222 25556666654 2468888987654
Q ss_pred eee--EeeccCCCeEEEEEcCCCCEEEEEECCC----cEEEEECCCCc
Q 006497 190 EER--SLTGHGWDVKSVDWHPTKSLLVSGGKDS----LVKLWDAKSGR 231 (643)
Q Consensus 190 ~~~--~~~~~~~~V~~l~~sp~~~~l~sgs~dg----~I~iwD~~~~~ 231 (643)
-.. .+.. .......+..-++++.+.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 322 1111 11111222222567777777654 35688888654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.76 E-value=2.6 Score=48.11 Aligned_cols=264 Identities=16% Similarity=0.091 Sum_probs=133.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEECCCc--EEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQSGE--FTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~dg~--I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~ 144 (643)
....+...+..+.|++|+..++..+.++. ..+|-+.... .+..+...|....|+++++.++....++..+.-
T Consensus 54 ~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~--- 127 (620)
T COG1506 54 RLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRD--- 127 (620)
T ss_pred cccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC---ceeeeecccccceeCCCCCeEEEEecccccccC---
Confidence 45567788999999999999998774432 3333322211 344456778889999999988873222211110
Q ss_pred CCceEEeecCCCCCeEE--EEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCc-
Q 006497 145 MNNVKANKSAHKESVRD--LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL- 221 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~--l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~- 221 (643)
+. ....+.. +.|...+ .....+.+.|.++ ...........+....++.+++.++....+..
T Consensus 128 -~~-------~~~~~~~~~~~~~~~g------~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (620)
T COG1506 128 -GG-------DHLFVDRLPVWFDGRG------GERSDLYVVDIES--KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDA 191 (620)
T ss_pred -Cc-------eeeeecccceeecCCC------CcccceEEEccCc--ccccccCCCCceeeeeeCCCCceeEEeeecccc
Confidence 00 0000000 1111111 2344555666554 33333445556777777777776666554432
Q ss_pred ------EEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC-C-------cEEEEECCCCeEEEEeecCC--CCe
Q 006497 222 ------VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD-Q-------IIKLYDIRAMKELESFRGHR--KDV 285 (643)
Q Consensus 222 ------I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d-g-------~I~iwd~~~~~~~~~~~~~~--~~I 285 (643)
..+++..+ ..+..+......+..+.|..+++.++..+.. . .+.++|.+.++....+.... ...
T Consensus 192 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 270 (620)
T COG1506 192 DPWVTNLYVLIEGN-GELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGA 270 (620)
T ss_pred CCceEeeEEEecCC-CceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCc
Confidence 23333323 3444555555668889999998855544322 2 23444422222221011100 001
Q ss_pred EEEEEecCCCCEEEEEeC-CCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEE-ECC---CeEEEEec
Q 006497 286 TALAWHPFHEEYFVSGSL-DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG-SND---HTTKFWCR 355 (643)
Q Consensus 286 ~~l~~sp~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sg-s~D---g~V~iWd~ 355 (643)
..+...-.+..+++++.. .+...++++................|..+.+ +++.++.. +.. ..+.+|+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~--~~~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 271 WAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDV--DGRKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred HHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEee--CCCEEEEEecCCCCccceEEEcC
Confidence 111111123444444444 6777777776544444444443456666666 55554443 222 35666664
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.47 Score=52.31 Aligned_cols=169 Identities=9% Similarity=-0.009 Sum_probs=80.1
Q ss_pred CCCEEEEEeCCC-----cEEEEECCCCceEEeecCCCCCe-EEEEEecCCCEEEEEeCC--CcEEEEECCCCeeee--Ee
Q 006497 125 NDNWMVSGDDGG-----AIKYWQNNMNNVKANKSAHKESV-RDLSFCRTDLKFCSCSDD--TTVKVWDFARCQEER--SL 194 (643)
Q Consensus 125 ~~~~L~sg~~dg-----~V~iwd~~~~~~~~~~~~~~~~I-~~l~~s~d~~~l~s~s~d--g~I~iwdl~~~~~~~--~~ 194 (643)
++.++++|+.++ .+..||..+++....-.-..... .+++ .-++...++|+.+ ..+..||..+.+-.. .+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 345667776543 46677877654333221111111 1222 2366666777653 467888876543221 11
Q ss_pred eccCCCeEEEEEcCCCCEEEEEECCC---cEEEEECCCCceeEE--eccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 195 TGHGWDVKSVDWHPTKSLLVSGGKDS---LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 195 ~~~~~~V~~l~~sp~~~~l~sgs~dg---~I~iwD~~~~~~~~~--~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
.........+.+ ++++.++|+.++ .+..||.++.+-... +.........+++ ++++.+.| |.+.+||.
T Consensus 350 ~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecC
Confidence 111111222222 567777777553 477888876543221 1111111122222 45555555 35778888
Q ss_pred CCCeE--EEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 270 RAMKE--LESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 270 ~~~~~--~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
++.+- +..+........ ++.. ++++++.|+.+
T Consensus 423 ~~~~W~~~~~m~~~r~~~~-~~v~--~~~IYviGG~~ 456 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNPE-LIIV--DNKLLLIGGFY 456 (480)
T ss_pred CCCcEeEcCCCCCCccccE-EEEE--CCEEEEECCcC
Confidence 76443 222222222222 2222 56777777754
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=95.74 E-value=3.3 Score=46.45 Aligned_cols=163 Identities=14% Similarity=0.166 Sum_probs=88.0
Q ss_pred CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeee--Eeec-cC------CCeEEEEEcCCCCEEEEEEC-CC---c
Q 006497 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER--SLTG-HG------WDVKSVDWHPTKSLLVSGGK-DS---L 221 (643)
Q Consensus 155 ~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~--~~~~-~~------~~V~~l~~sp~~~~l~sgs~-dg---~ 221 (643)
.++.|..+.|..+++.+++...+|.|.+||........ .+.. +. .-|..........++++.+. ++ .
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 46789999999999999999999999999993322111 1111 11 11222221122344444443 22 4
Q ss_pred EEEEECC-CCceeEEec---cCCCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEeecC-----C-CCeEEEEE
Q 006497 222 VKLWDAK-SGRELCSFH---GHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELESFRGH-----R-KDVTALAW 290 (643)
Q Consensus 222 I~iwD~~-~~~~~~~~~---~~~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----~-~~I~~l~~ 290 (643)
++++.+. +...+..+. .+.......+|+- +|. |+.- .+++|.+|++-..+...++... . ..+.++.-
T Consensus 208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~ 285 (670)
T PF10395_consen 208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKP 285 (670)
T ss_pred EEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEeec
Confidence 6777771 122222221 1222223333333 444 3333 6789999999888776665422 1 23333332
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCcceEEEe
Q 006497 291 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322 (643)
Q Consensus 291 sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 322 (643)
-. .+++|++. ++.|++.|+.....+.++.
T Consensus 286 ~s-~nRvLLs~--~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 286 PS-PNRVLLSV--NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CC-CCeEEEEc--CCEEEEEeehhhhhhhhhh
Confidence 21 34555543 5699999986555444433
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.015 Score=64.90 Aligned_cols=200 Identities=15% Similarity=0.169 Sum_probs=113.9
Q ss_pred EeecCCCCCeEEEEEcCCC-CEEEEEECCCcEEEEeCCC--CceE-----EEEccCCCCEEEEEEcC---CCCEEEEEeC
Q 006497 66 TSLNKNRCSINRVLWTPTG-RRLITGSQSGEFTLWNGQS--FNFE-----MILQAHDHAIRSMVWSH---NDNWMVSGDD 134 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg-~~L~tgs~dg~I~iwd~~~--~~~~-----~~l~~h~~~V~~l~~s~---~~~~L~sg~~ 134 (643)
..+++..+.|-.+.|-... ..++ ..-|.+.|||++- |+.. .........+.-|.|.+ +..++..+..
T Consensus 126 ~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~ 203 (1283)
T KOG1916|consen 126 ELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLK 203 (1283)
T ss_pred HHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccC
Confidence 3456778888888886532 2222 3347788998653 3322 22223344555666655 5667888888
Q ss_pred CCcEEEEECCCCceEEeecCCCCCeEEEE-----------EecCCCEEEEEeCCCcEEEEECC-----CCeeeeEeeccC
Q 006497 135 GGAIKYWQNNMNNVKANKSAHKESVRDLS-----------FCRTDLKFCSCSDDTTVKVWDFA-----RCQEERSLTGHG 198 (643)
Q Consensus 135 dg~V~iwd~~~~~~~~~~~~~~~~I~~l~-----------~s~d~~~l~s~s~dg~I~iwdl~-----~~~~~~~~~~~~ 198 (643)
++.|++.++++... ..+..|...+.+++ +++||..|+.++.||.++.|.+. ...++...+.|.
T Consensus 204 ~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 204 GGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred CCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 89998887765443 23344666555443 57899999999999998888762 223344445555
Q ss_pred -CCeEEEEEcCCC---------CEEEEE-ECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCE------------E
Q 006497 199 -WDVKSVDWHPTK---------SLLVSG-GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW------------V 255 (643)
Q Consensus 199 -~~V~~l~~sp~~---------~~l~sg-s~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~------------l 255 (643)
..-.|..++... .+++++ ..+..+++|.....+|+.. ..-..|..|. -++++. +
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~--~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~ 359 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLD--KLIDGVQIVG-PHDGEVTDLSMCQWMTTRL 359 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhhh--hcccceEeec-CCCccccchhhhHHHHHHH
Confidence 222233333221 133333 3455688998877776622 2223344444 223321 2
Q ss_pred EEEECCCcEEEEECCC
Q 006497 256 LTASKDQIIKLYDIRA 271 (643)
Q Consensus 256 ~s~s~dg~I~iwd~~~ 271 (643)
+.-+.++.|.+|--+.
T Consensus 360 v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 360 VSRSVDGTIKIWQNRK 375 (1283)
T ss_pred HHhhhHHHHHHhhcch
Confidence 3345677788876443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=1.7 Score=46.20 Aligned_cols=53 Identities=8% Similarity=0.128 Sum_probs=25.5
Q ss_pred CCCEEEEEeCCC-----------cEEEEECCCCceEEeecCCCCCeE-EEEEe-cCCCEEEEEeCC
Q 006497 125 NDNWMVSGDDGG-----------AIKYWQNNMNNVKANKSAHKESVR-DLSFC-RTDLKFCSCSDD 177 (643)
Q Consensus 125 ~~~~L~sg~~dg-----------~V~iwd~~~~~~~~~~~~~~~~I~-~l~~s-~d~~~l~s~s~d 177 (643)
++++++.|+.+. .+..||..+++-...-........ ..+.. -+++.++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 566777776532 466778776543332111111111 11122 366667776643
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.4 Score=45.87 Aligned_cols=105 Identities=13% Similarity=0.134 Sum_probs=50.8
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCeee---eEeeccCCC--eEEEEEcCCCCEEEEEEC-----CCcEEEEECCCCc
Q 006497 167 TDLKFCSCSDD-----TTVKVWDFARCQEE---RSLTGHGWD--VKSVDWHPTKSLLVSGGK-----DSLVKLWDAKSGR 231 (643)
Q Consensus 167 d~~~l~s~s~d-----g~I~iwdl~~~~~~---~~~~~~~~~--V~~l~~sp~~~~l~sgs~-----dg~I~iwD~~~~~ 231 (643)
++.+++.++.+ ..+..||+.+.+.. ..+...... -.+++.. ++++.+.|+. ...+..||+++.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 45566666653 35667777665421 111111111 1122222 4566666664 2358889988654
Q ss_pred eeE--EeccCCCcEEEEEEcCCCCEEEEEECCC----cEEEEECCCCe
Q 006497 232 ELC--SFHGHKNMVLCVKWNQNGNWVLTASKDQ----IIKLYDIRAMK 273 (643)
Q Consensus 232 ~~~--~~~~~~~~i~~l~~sp~g~~l~s~s~dg----~I~iwd~~~~~ 273 (643)
-.. .+... ......+..-++++.+.|+.++ .+.+||.++.+
T Consensus 151 W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 WFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred eeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 322 12111 1111122223566677776553 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=95.62 E-value=4.8 Score=47.13 Aligned_cols=231 Identities=11% Similarity=-0.023 Sum_probs=126.8
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCce---------EEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC------
Q 006497 123 SHNDNWMVSGDDGGAIKYWQNNMNNV---------KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------ 187 (643)
Q Consensus 123 s~~~~~L~sg~~dg~V~iwd~~~~~~---------~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~------ 187 (643)
.++...+++-+.+|.|+-.+..+... ...++ ..+.+..+..+.....|+..+.+|.+...+...
T Consensus 493 i~~e~~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klK-e~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r 571 (800)
T TIGR01063 493 IARENVVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMK-DDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASR 571 (800)
T ss_pred cCcceEEEEEcCCCEEEecchhhhhhhcccCcCccccccC-CCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCc
Confidence 34566788899999998876543221 01111 234566666666777777778888877765422
Q ss_pred ---Ceee---eEeeccCCCeEEEEEc--CCCCEEEEEECCCcEEEEECCCCc-------eeEEeccCCCcEEEEEEcCCC
Q 006497 188 ---CQEE---RSLTGHGWDVKSVDWH--PTKSLLVSGGKDSLVKLWDAKSGR-------ELCSFHGHKNMVLCVKWNQNG 252 (643)
Q Consensus 188 ---~~~~---~~~~~~~~~V~~l~~s--p~~~~l~sgs~dg~I~iwD~~~~~-------~~~~~~~~~~~i~~l~~sp~g 252 (643)
+..+ ..+...+.-|.++.+. .++..++..+.+|.++-.++..-+ ....+.. .+.+..+....+.
T Consensus 572 ~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke-~D~lv~v~~~~~~ 650 (800)
T TIGR01063 572 TAKGKPIVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD-GDELISVRLTSGD 650 (800)
T ss_pred CCCCcCHHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC-CCEEEEEEEeCCC
Confidence 1111 1222223334455542 245688999999999988765422 1122332 3445444444455
Q ss_pred CEEEEEECCCcEEEEECCC---------CeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC-------c
Q 006497 253 NWVLTASKDQIIKLYDIRA---------MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE-------T 316 (643)
Q Consensus 253 ~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~-------~ 316 (643)
..|+..+..|.+..+.+.. |.....+. ....|.++.... ++..++..+..|.++...+..- .
T Consensus 651 d~lll~Ts~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~-~~E~Vv~~~~v~-~~~~ll~vT~~G~~Kr~~l~e~~~~~R~~k 728 (800)
T TIGR01063 651 DEVMLGSKNGKAVRFPEEDVRPMGRAARGVRGIKLK-NEDFVVSLLVVS-EESYLLIVTENGYGKRTSIEEYRETSRGGK 728 (800)
T ss_pred CEEEEEECCCcEEEEEhhhcCCcCCCCCCeecccCC-CCCEEEEEEEec-cccEEEEEecCCcEEEEEHHHccccCCCCc
Confidence 5677777788766665532 12222222 223354444443 4556788888898887765311 1
Q ss_pred ceEEEe-cccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 317 PQVEIH-NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 317 ~~~~~~-~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
-...+. ....+.+..+....+...++..+.+|.+..++.+.
T Consensus 729 Gv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 729 GVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred ceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
Confidence 111111 11123444444444445577777888887777653
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.4 Score=44.41 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCCEEEEEeCC-----------CcEEEEECCCCceEEeecCCCCCeEEE-EE-ecCCCEEEEEeCC
Q 006497 125 NDNWMVSGDDG-----------GAIKYWQNNMNNVKANKSAHKESVRDL-SF-CRTDLKFCSCSDD 177 (643)
Q Consensus 125 ~~~~L~sg~~d-----------g~V~iwd~~~~~~~~~~~~~~~~I~~l-~~-s~d~~~l~s~s~d 177 (643)
++++.+.|+.+ ..+..||..+++-.............. +. .-+++..+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777753 246677877655333211111111111 11 2366677777653
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.046 Score=38.81 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCC
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQ 102 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~ 102 (643)
...|.+++|+|+.++||.++.+|.|.||.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4469999999999999999999999999983
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=95.49 E-value=1 Score=43.10 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=83.4
Q ss_pred CEEEEEECCCcEEEEECC--CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCC------cEEEE-ECCCC----eEEE-
Q 006497 211 SLLVSGGKDSLVKLWDAK--SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ------IIKLY-DIRAM----KELE- 276 (643)
Q Consensus 211 ~~l~sgs~dg~I~iwD~~--~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg------~I~iw-d~~~~----~~~~- 276 (643)
+.|+++...++|.+||+. ..+.+.+|.. -+.|..+.++..|+||++--++. .+|+| |.+.. +.+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 445454667889999998 3345566654 37899999999999999875432 45665 22211 1111
Q ss_pred Eeec---------------------CCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcc------eEEE----eccc
Q 006497 277 SFRG---------------------HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP------QVEI----HNVH 325 (643)
Q Consensus 277 ~~~~---------------------~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~------~~~~----~~~h 325 (643)
.+.+ -.....+++..+..|++++.+ ++++.+|.+..... ...+ ...|
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 1111 134567888888777877755 56888887643221 1111 0111
Q ss_pred C-cceEEEEEcCCCCEEEEEECCCeEEEEecC
Q 006497 326 D-NTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 326 ~-~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~ 356 (643)
. -....+++. +.++|..+ |-.++++++.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 1 124566665 55676665 6678888763
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=1.5 Score=46.17 Aligned_cols=152 Identities=10% Similarity=0.153 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEeCCCC---ceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceE--
Q 006497 75 INRVLWTPTGRRLITGSQSGEFTLWNGQSF---NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK-- 149 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~dg~I~iwd~~~~---~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~-- 149 (643)
-+.+-|...++.|++.. .|.+.=|-.+.. ..+..-...++.|.++.|+.|++.||+--.|++|.+++....+..
T Consensus 25 sngvFfDDaNkqlfavr-SggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~ 103 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVR-SGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE 103 (657)
T ss_pred ccceeeccCcceEEEEe-cCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence 34455554445444443 444555543321 122223345679999999999999999999999999987433221
Q ss_pred --EeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeeeEeeccCCCeEEEEEcCCCCEEEEEE--CCCcEEE
Q 006497 150 --ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR-CQEERSLTGHGWDVKSVDWHPTKSLLVSGG--KDSLVKL 224 (643)
Q Consensus 150 --~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~-~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs--~dg~I~i 224 (643)
.+.+.....|....|+.+ .-+|...+.| +.+|.+.. ...++..+.+...|+-..|+++.+.++.++ ..+++.=
T Consensus 104 ~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnp 181 (657)
T KOG2377|consen 104 YTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNP 181 (657)
T ss_pred HHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecccccccccc
Confidence 122334456888889865 4455555433 66665533 234555666777888888998887554443 3344444
Q ss_pred EECCC
Q 006497 225 WDAKS 229 (643)
Q Consensus 225 wD~~~ 229 (643)
+-+++
T Consensus 182 f~~~~ 186 (657)
T KOG2377|consen 182 FHFRA 186 (657)
T ss_pred EEEee
Confidence 44443
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.37 E-value=4.8 Score=43.11 Aligned_cols=142 Identities=11% Similarity=0.145 Sum_probs=86.1
Q ss_pred CCEEEEEeCCCcEEEEECCCCce----EEeecCCCCCeEEEEEec-----CCCEEEEEeCCCcEEEEECCCC--e-----
Q 006497 126 DNWMVSGDDGGAIKYWQNNMNNV----KANKSAHKESVRDLSFCR-----TDLKFCSCSDDTTVKVWDFARC--Q----- 189 (643)
Q Consensus 126 ~~~L~sg~~dg~V~iwd~~~~~~----~~~~~~~~~~I~~l~~s~-----d~~~l~s~s~dg~I~iwdl~~~--~----- 189 (643)
.+.|++|+.+|.++||+...... +......+.+|..++.-. +...||+ -.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 46899999999999998754331 111134457787776543 2233444 45677888887221 1
Q ss_pred --eeeEeeccC--CCeEEEEEcC----C-CCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEEC
Q 006497 190 --EERSLTGHG--WDVKSVDWHP----T-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 190 --~~~~~~~~~--~~V~~l~~sp----~-~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~ 260 (643)
.+..+..|. .....+++-+ . ..+|++-+.||.+.+|+-+.....+.+.. ----..++|.+.-+.|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 122222232 2223333322 2 35788899999999999775433333332 223356778887788999888
Q ss_pred CCcEEEEEC
Q 006497 261 DQIIKLYDI 269 (643)
Q Consensus 261 dg~I~iwd~ 269 (643)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 888888865
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.7 Score=45.17 Aligned_cols=145 Identities=9% Similarity=-0.012 Sum_probs=72.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCceEEeecC----CCCCeEEEEEecCCCEEEEEeCC-----CcEEEEECCCCee
Q 006497 125 NDNWMVSGDDG-----GAIKYWQNNMNNVKANKSA----HKESVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARCQE 190 (643)
Q Consensus 125 ~~~~L~sg~~d-----g~V~iwd~~~~~~~~~~~~----~~~~I~~l~~s~d~~~l~s~s~d-----g~I~iwdl~~~~~ 190 (643)
++++++.|+.+ ..+.+||+.+.+-...... ....-.+++. -++++++.++.+ ..+.+||+.+.+-
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence 45666777654 3577888877654332111 1111122222 245556666543 3467888876543
Q ss_pred eeEee-----ccCCCeEEEEEcCCCCEEEEEECC----CcEEEEECCCCceeEEecc-----CCCcEEEEEEcCCCCEEE
Q 006497 191 ERSLT-----GHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVL 256 (643)
Q Consensus 191 ~~~~~-----~~~~~V~~l~~sp~~~~l~sgs~d----g~I~iwD~~~~~~~~~~~~-----~~~~i~~l~~sp~g~~l~ 256 (643)
...-. ........+.+ ++++++.++.+ ..|.+||+.+.+-...-.. ......++.+ ++++++
T Consensus 307 ~~~~~~~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv 382 (470)
T PLN02193 307 FHCSTPGDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVI 382 (470)
T ss_pred EeCCCCCCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEE
Confidence 22110 01111122222 56777777655 4589999987653322110 1111222332 456677
Q ss_pred EEECC--------------CcEEEEECCCCeE
Q 006497 257 TASKD--------------QIIKLYDIRAMKE 274 (643)
Q Consensus 257 s~s~d--------------g~I~iwd~~~~~~ 274 (643)
.|+.+ ..+.+||+.+.+-
T Consensus 383 ~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W 414 (470)
T PLN02193 383 FGGEIAMDPLAHVGPGQLTDGTFALDTETLQW 414 (470)
T ss_pred ECCccCCccccccCccceeccEEEEEcCcCEE
Confidence 77643 2478888876544
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.0028 Score=66.13 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=102.6
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCE-EEEEECCCcEEEEECCCCceeEEecc
Q 006497 160 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHG 238 (643)
Q Consensus 160 ~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~-l~sgs~dg~I~iwD~~~~~~~~~~~~ 238 (643)
....|-+.+..++.++.+..|..||-.. +...... ......+++|+.++.. ++.+-..+.+++||+.+...-..-.+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 3455667776688888899999999543 3333332 2345567888887764 44556778999999986532211111
Q ss_pred CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEEC
Q 006497 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 239 ~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
....-.-+.|++....++.+...+.+.|++..+.+.+...-.|...+++++|.. +++.+.++.|..+.+-..
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l--Ed~vil~dcd~~L~v~~q 187 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL--EDYVILCDCDNTLSVTTQ 187 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc--cceeeecCcHHHHHHhhh
Confidence 111122278888888899998999999999988777776666899999999987 677777777766544433
|
|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.19 Score=47.54 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=4.2
Q ss_pred CCCCcccCCcc
Q 006497 406 TRNEGTIPGVG 416 (643)
Q Consensus 406 ~r~~g~vpgy~ 416 (643)
||..-.|..|+
T Consensus 71 gr~~i~veiyg 81 (341)
T KOG2893|consen 71 GRDNIHVEIYG 81 (341)
T ss_pred CCcceeEEEee
Confidence 33333333343
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=95.20 E-value=2 Score=49.36 Aligned_cols=95 Identities=13% Similarity=0.202 Sum_probs=53.7
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
.-.|..|.++++|++|+..+..|.+.+.=-..+.....++.-...|.|-.+.-+..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~---------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF---------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhc----------------------
Confidence 3479999999999999998887654443222111112222222333332222111111
Q ss_pred ecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCC
Q 006497 152 KSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARC 188 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d---~~~l~s~s~dg~I~iwdl~~~ 188 (643)
.......|..+.|+|. +..|++-..|++|++||+...
T Consensus 142 ~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 142 TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 1123345667778775 467777788888888888543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.15 E-value=2 Score=48.72 Aligned_cols=6 Identities=17% Similarity=0.086 Sum_probs=2.6
Q ss_pred cccCCc
Q 006497 410 GTIPGV 415 (643)
Q Consensus 410 g~vpgy 415 (643)
....|+
T Consensus 18 ~~~~g~ 23 (1007)
T KOG1984|consen 18 NFYGGS 23 (1007)
T ss_pred CcCCCC
Confidence 344444
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.53 Score=49.99 Aligned_cols=142 Identities=11% Similarity=0.133 Sum_probs=89.2
Q ss_pred CCCCEEE-EEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCC--------CEEEEEeCCCcEEEEECCCCe-eeeE
Q 006497 124 HNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD--------LKFCSCSDDTTVKVWDFARCQ-EERS 193 (643)
Q Consensus 124 ~~~~~L~-sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~--------~~l~s~s~dg~I~iwdl~~~~-~~~~ 193 (643)
.+.++|+ .+.....++-.|++.++++..+..|... -+.|.++. ..|+-. .+..|.-.|-+-.. .+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGl-S~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGL-SDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEee-cccceEEecccccCCceee
Confidence 3444444 4555567788899999999888777665 45666543 334444 45555555653322 2222
Q ss_pred eec----cCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 194 LTG----HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 194 ~~~----~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
... ......|..-. ...+|++++..|.|++||.-.-+....+.+....|..|..+.+|++|++.|. ..|.+-|+
T Consensus 554 ~esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 554 VESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred eeehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 111 11223333322 4568999999999999996544444455667778999999999998887764 46777776
Q ss_pred C
Q 006497 270 R 270 (643)
Q Consensus 270 ~ 270 (643)
+
T Consensus 632 ~ 632 (776)
T COG5167 632 P 632 (776)
T ss_pred c
Confidence 5
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.12 E-value=4.2 Score=40.97 Aligned_cols=220 Identities=14% Similarity=0.176 Sum_probs=122.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECC-------CCceEEeecC-----CCCCeEEEEEecCC------------CEE
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNN-------MNNVKANKSA-----HKESVRDLSFCRTD------------LKF 171 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~-------~~~~~~~~~~-----~~~~I~~l~~s~d~------------~~l 171 (643)
.-+.|++++.+.+.++....+...+||.+ ...++..+.. .....+.+.|+... ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34678999988888877788899999986 1123333321 23456677776422 236
Q ss_pred EEEeCCCcEEEEECCCCee-----eeEeec-cCCC-eEEEEEcC--CCCEEEEE-ECCCcEEEEECCCCceeE--EeccC
Q 006497 172 CSCSDDTTVKVWDFARCQE-----ERSLTG-HGWD-VKSVDWHP--TKSLLVSG-GKDSLVKLWDAKSGRELC--SFHGH 239 (643)
Q Consensus 172 ~s~s~dg~I~iwdl~~~~~-----~~~~~~-~~~~-V~~l~~sp--~~~~l~sg-s~dg~I~iwD~~~~~~~~--~~~~~ 239 (643)
+.+++||+|.-|.-.-... ...+.. .... -+.+++.. .+++|..+ -.+++|.+||-.-.+... .+...
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7789999999998522211 122221 1122 23455543 24444444 467889999854322110 01100
Q ss_pred -----CC--cE---------EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee--cCCCCeEEEEEec-----CCCC
Q 006497 240 -----KN--MV---------LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHP-----FHEE 296 (643)
Q Consensus 240 -----~~--~i---------~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~I~~l~~sp-----~~~~ 296 (643)
-. .| +-..-.++.+.=+.+..-|.|-+||+. ++.++++. +.-..-+.|+..| ..+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 00 01 111111222222223344689999975 77777774 2233445666544 2467
Q ss_pred EEEEEeCCCcEEEEECCCCcceEEEecccC-----cceEEEEEcC
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHD-----NTVWDLAWHP 336 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~ 336 (643)
+|+.--.||+|..||..+...+-.+..... ..+|.|+|-.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 787777899999999877665544443322 3478888865
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=95.07 E-value=5 Score=44.15 Aligned_cols=116 Identities=10% Similarity=0.094 Sum_probs=61.9
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCC---CeEEEEEcCCCCEEEEEEC-------------CCcEEEE
Q 006497 162 LSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW---DVKSVDWHPTKSLLVSGGK-------------DSLVKLW 225 (643)
Q Consensus 162 l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~---~V~~l~~sp~~~~l~sgs~-------------dg~I~iw 225 (643)
+...+++.+++... ..++.+|+. ++.+..+..... .-.++...++|++|+.+.. +..|..+
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 56667887776554 788888875 344444443221 1346777889998888772 1236666
Q ss_pred ECCCCceeEEecc--C----C---------------------CcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEE
Q 006497 226 DAKSGRELCSFHG--H----K---------------------NMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKELES 277 (643)
Q Consensus 226 D~~~~~~~~~~~~--~----~---------------------~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~~~ 277 (643)
| .+|+.+..+.. | . --++++.+.+ ++.+|+++-.-..|...|.++++....
T Consensus 230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi 308 (477)
T PF05935_consen 230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI 308 (477)
T ss_dssp --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence 6 67776655421 0 0 1278999998 444454444455888999888888776
Q ss_pred eecC
Q 006497 278 FRGH 281 (643)
Q Consensus 278 ~~~~ 281 (643)
+..+
T Consensus 309 lg~~ 312 (477)
T PF05935_consen 309 LGPP 312 (477)
T ss_dssp ES-S
T ss_pred eCCC
Confidence 6543
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.06 E-value=1.4 Score=41.58 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=93.0
Q ss_pred CCCEEEEEeC--CCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCC-EEEEEECCCcEEEEECCCCceeEEeccCCCcE
Q 006497 167 TDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV 243 (643)
Q Consensus 167 d~~~l~s~s~--dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~-~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i 243 (643)
++.++.+.+. ...|++||+++++.+.........+..=-...-++ .....-.||.-.+||.++.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 4555666554 45799999998887765543211111111111122 23334567888899999888887765 33444
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecC-----CCCeEEEEEecCCCCEEEEE----------eCCCcEE
Q 006497 244 LCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH-----RKDVTALAWHPFHEEYFVSG----------SLDGSIF 308 (643)
Q Consensus 244 ~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-----~~~I~~l~~sp~~~~~l~sg----------s~dg~I~ 308 (643)
+.++. |++.|+.++...+++.-|-++...+.++... -..++.+.|- ++.+.|-. -..|+|.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~ 209 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVV 209 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEE
Confidence 56654 4555666666667777776655444333211 1123333443 23333222 2334444
Q ss_pred EE-ECCCCcceEEEecccCcceEEEEEcCCC-CEEEEE
Q 006497 309 HW-LVGHETPQVEIHNVHDNTVWDLAWHPIG-YLLCSG 344 (643)
Q Consensus 309 iw-d~~~~~~~~~~~~~h~~~V~~l~~s~d~-~~L~sg 344 (643)
-| |+..-.........|.+..+.|++.+++ +++++|
T Consensus 210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44 4433333333444456678899999987 445554
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.35 Score=51.25 Aligned_cols=141 Identities=12% Similarity=0.098 Sum_probs=89.5
Q ss_pred CCCEEE-EEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCC--------CEEEEEeCCCcEEEEECCC--CceEEe
Q 006497 83 TGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND--------NWMVSGDDGGAIKYWQNNM--NNVKAN 151 (643)
Q Consensus 83 dg~~L~-tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~--------~~L~sg~~dg~V~iwd~~~--~~~~~~ 151 (643)
|..+|+ .+.....++-.|++.++.+..+..|... -+.|.|+. ..|+ |-.+..|.-.|.+. +++...
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 444444 3444556777788889999888877765 46676643 2344 44444454445332 222211
Q ss_pred e---cCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECC
Q 006497 152 K---SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 152 ~---~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~ 228 (643)
. ...+....+..-. ...+||+++..|.|++||--.......+.+....|..|..+.+|++|++.|. ..|.+-|++
T Consensus 555 esKdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 555 ESKDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eehhccccccccccccc-cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1 1122233333332 4458999999999999997555555566777889999999999998887765 567787765
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=95.05 E-value=5.4 Score=41.94 Aligned_cols=193 Identities=15% Similarity=0.145 Sum_probs=109.9
Q ss_pred CCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcC----CCCE--EEEE-eCC---CcEEEEECC--CCceEE
Q 006497 83 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH----NDNW--MVSG-DDG---GAIKYWQNN--MNNVKA 150 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~----~~~~--L~sg-~~d---g~V~iwd~~--~~~~~~ 150 (643)
...+|+....++-+.+||++.. .+..+. .+.++.+.... +++. |+++ ..+ ..|++|.++ ++.+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4467777788888999998754 455553 34455444321 3332 3333 332 469999765 333322
Q ss_pred eec------CCCCCeEEEEEec---CCC-EEEEEeCCCcEEEEECC---CC----eeeeEeeccCCCeEEEEEcCCCCEE
Q 006497 151 NKS------AHKESVRDLSFCR---TDL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 151 ~~~------~~~~~I~~l~~s~---d~~-~l~s~s~dg~I~iwdl~---~~----~~~~~~~~~~~~V~~l~~sp~~~~l 213 (643)
... .....+..+|+.. ++. ++++...+|.+..|.+. ++ +.++.+.. ...+..|..+.....|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 211 1223466777653 344 45667788998888773 22 34566653 4578899999888899
Q ss_pred EEEECCCcEEEEECCCC-----ceeEEecc--CCCcEEEEEEcC--CC-CEEEEEE-CCCcEEEEECCC-CeEEEEee
Q 006497 214 VSGGKDSLVKLWDAKSG-----RELCSFHG--HKNMVLCVKWNQ--NG-NWVLTAS-KDQIIKLYDIRA-MKELESFR 279 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~-----~~~~~~~~--~~~~i~~l~~sp--~g-~~l~s~s-~dg~I~iwd~~~-~~~~~~~~ 279 (643)
+++-++.-|.-|+.+-. +.+....+ ....|..|++.. ++ .||++.+ .+++..|||.+. ...+..|.
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 99999988888887622 22222222 345677777753 33 3565555 567899999874 33344443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=95.03 E-value=7.3 Score=43.26 Aligned_cols=248 Identities=12% Similarity=0.166 Sum_probs=122.4
Q ss_pred cCCCCEEEEEECCCcEEEEeCCCCc--eEEEEccC-CCCEEEEEEcCCC-CEEEEEeCCCc--EEEEECCCCceEEeecC
Q 006497 81 TPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAH-DHAIRSMVWSHND-NWMVSGDDGGA--IKYWQNNMNNVKANKSA 154 (643)
Q Consensus 81 spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h-~~~V~~l~~s~~~-~~L~sg~~dg~--V~iwd~~~~~~~~~~~~ 154 (643)
..++..++.+.++|.+....+.... .....-+. .....++++..++ .+|+.|+.-|. +..|....-+++..+ .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~-~ 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL-P 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-c
Confidence 4567789999999998888765433 11111122 4455667776554 47888876555 444443333444444 3
Q ss_pred CCCCeEEEEEecC----CC------EEEEEe---CCCcEEEEECCCCee--eeEeeccC--CCeEEEEEcC-CCCEEEEE
Q 006497 155 HKESVRDLSFCRT----DL------KFCSCS---DDTTVKVWDFARCQE--ERSLTGHG--WDVKSVDWHP-TKSLLVSG 216 (643)
Q Consensus 155 ~~~~I~~l~~s~d----~~------~l~s~s---~dg~I~iwdl~~~~~--~~~~~~~~--~~V~~l~~sp-~~~~l~sg 216 (643)
.-++|.++++... .. .|++++ .+|.++++.-.-.-. ........ ..++.+.... ++.+|+.+
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence 4577888888632 12 556554 467888875321111 11222122 2233333222 24567666
Q ss_pred ECCCcEEEEECC---CCceeEEe-----ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeec-CCCCeEE
Q 006497 217 GKDSLVKLWDAK---SGRELCSF-----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG-HRKDVTA 287 (643)
Q Consensus 217 s~dg~I~iwD~~---~~~~~~~~-----~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~I~~ 287 (643)
..+. -+++.+. ..+.+..+ ......+.+-.+. ++.++=.+. ..|++.|....+....+.. ....|.+
T Consensus 378 ~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~-~~i~l~~~~~~~~~~~w~~~~~~~I~~ 453 (504)
T PF10433_consen 378 FPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTP-KGIRLIDLEDGKLTQEWKPPAGSIIVA 453 (504)
T ss_dssp ESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEES-SEEEEEESSSTSEEEEEE-TTS---SE
T ss_pred cCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEec-CeEEEEECCCCeEEEEEeCCCCCeEEE
Confidence 6554 4455553 23333222 1112233333333 445554443 3588999887777766643 3445566
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecc----cCcceEEEEEcC
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV----HDNTVWDLAWHP 336 (643)
Q Consensus 288 l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~s~ 336 (643)
.++ ++.+++.+..++.+.++.++........... ....|.|+...|
T Consensus 454 a~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 454 ASI---NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EEE---SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EEE---CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 555 3566666666888888888666544333211 356777777654
|
... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.085 Score=37.45 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=30.4
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 006497 240 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 275 (643)
Q Consensus 240 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 275 (643)
...|.+++|+|..++||.++.+|.|.||.+ +++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 456999999999999999999999999998 55543
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.85 Score=50.88 Aligned_cols=222 Identities=12% Similarity=0.181 Sum_probs=115.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCce-EEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~ 148 (643)
.|-..++.++|.-++.-++....|-+ -.+. ...+-.-++.|...+|+.|.+.++....+..|.+++..-.-
T Consensus 74 ~hf~~~~~~~f~~~~gDii~~~~dp~-------p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~- 145 (1243)
T COG5290 74 KHFHVLTFEYFLIDEGDIIHLVNDPT-------PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDP- 145 (1243)
T ss_pred hhhhhhheeeEEecCCcEEEEEcCCC-------cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccc-
Confidence 45566666766665544444444332 1111 12222345778899999999988888888888888632110
Q ss_pred EEee--c----CCCCCeEEEEEec-----------------------CCCEEEEEeCCCcEEEE--ECCC--------C-
Q 006497 149 KANK--S----AHKESVRDLSFCR-----------------------TDLKFCSCSDDTTVKVW--DFAR--------C- 188 (643)
Q Consensus 149 ~~~~--~----~~~~~I~~l~~s~-----------------------d~~~l~s~s~dg~I~iw--dl~~--------~- 188 (643)
+... + ..-+.-..+.|-. |...|.......++..| |.+- .
T Consensus 146 ise~~L~~~dl~ef~khi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~p 225 (1243)
T COG5290 146 ISEYHLKKSDLVEFGKHIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERP 225 (1243)
T ss_pred cchhhcchhHHHHhccceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhccc
Confidence 0000 0 0001111222220 11223334445566666 3210 0
Q ss_pred -eeeeEee------ccCCC----eEEEEEcCCCCEEEEEECCC-----cEEEEECCC---CceeEEeccCCCcEEEEEEc
Q 006497 189 -QEERSLT------GHGWD----VKSVDWHPTKSLLVSGGKDS-----LVKLWDAKS---GRELCSFHGHKNMVLCVKWN 249 (643)
Q Consensus 189 -~~~~~~~------~~~~~----V~~l~~sp~~~~l~sgs~dg-----~I~iwD~~~---~~~~~~~~~~~~~i~~l~~s 249 (643)
...+.+. ....+ -..+.|-|.|..+++-..|| .|+++.-+. |+.-.. .+.+..+..++|+
T Consensus 226 rra~rvysreg~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr-~~~dEk~~~~~wn 304 (1243)
T COG5290 226 RRAFRVYSREGQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLR-VGCDEKAFLENWN 304 (1243)
T ss_pred ccceeeeccccccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCcccc-CCchhhhhhhhhh
Confidence 0011111 01112 23488999999999987665 355555331 211111 1233456677787
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEE
Q 006497 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 250 p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sg 301 (643)
-....++++ ..+.|++|-..+..........-..+.-+.|+|...+.|+..
T Consensus 305 ~~s~vlav~-~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~ 355 (1243)
T COG5290 305 LLSTVLAVA-EGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFR 355 (1243)
T ss_pred HHHHHHHHh-hcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEe
Confidence 655555544 466899999887665544444556677788888555544443
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=94.90 E-value=5.1 Score=40.83 Aligned_cols=164 Identities=12% Similarity=0.153 Sum_probs=91.4
Q ss_pred cEEEEECCCCeeeeEeec------cCCCeEEEEEcCCC-----CEEEEEE-CCCcEEEEECCCCceeEEeccC-------
Q 006497 179 TVKVWDFARCQEERSLTG------HGWDVKSVDWHPTK-----SLLVSGG-KDSLVKLWDAKSGRELCSFHGH------- 239 (643)
Q Consensus 179 ~I~iwdl~~~~~~~~~~~------~~~~V~~l~~sp~~-----~~l~sgs-~dg~I~iwD~~~~~~~~~~~~~------- 239 (643)
+|.+||+.+.+.++.+.- ..+.+..+.++... .++..+. ..+.|.|+|+++++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 677888888887776652 24467788887632 2333333 3457999999998765554321
Q ss_pred ------------CCcEEEEEEcC---CCCEEEEEECCCcEEEEECCC-----Ce---------EEEEeecCCCCeEEEEE
Q 006497 240 ------------KNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRA-----MK---------ELESFRGHRKDVTALAW 290 (643)
Q Consensus 240 ------------~~~i~~l~~sp---~g~~l~s~s~dg~I~iwd~~~-----~~---------~~~~~~~~~~~I~~l~~ 290 (643)
...+..++.++ ++++|+.....+ .++|.+.+ .. .+..+-........+++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~ 193 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAI 193 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEE
Confidence 12356666655 566777665443 22333221 11 11222111235567788
Q ss_pred ecCCCCEEEEEeCCCcEEEEECCCCc---ceEEEeccc--CcceEEEEEcC--CCCEEEEE
Q 006497 291 HPFHEEYFVSGSLDGSIFHWLVGHET---PQVEIHNVH--DNTVWDLAWHP--IGYLLCSG 344 (643)
Q Consensus 291 sp~~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h--~~~V~~l~~s~--d~~~L~sg 344 (643)
++ ++.++++--..+.|..|+.+... ....+.... -..+.++.+.. ++.+.+..
T Consensus 194 D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 194 DP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp ET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 87 78888888889999999987622 111122111 23567888887 66555544
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.82 Score=51.12 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=73.4
Q ss_pred CcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEee-cCCCCeEEEEEecC-CCCEEEEEeCCCcEEEEECC-----
Q 006497 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLVG----- 313 (643)
Q Consensus 241 ~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~I~~l~~sp~-~~~~l~sgs~dg~I~iwd~~----- 313 (643)
....-+.-+.-++..++-+....+.|||.+.+....+-. ...+.|.++.|... ++..+++.+....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344455555555555555556689999999877443332 35778999999642 56778888888899888431
Q ss_pred CCc----ce--EEEecccCcceEEEEEcCCCCEEEEEECCCeEEEEecCC
Q 006497 314 HET----PQ--VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 314 ~~~----~~--~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
+.. .+ +.+.......|.+.+|..+|.+++.+ ++.+.|+|-..
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~~ 157 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKWL 157 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCCc
Confidence 111 11 11222123579999999999766655 46788887543
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.78 E-value=4.7 Score=39.87 Aligned_cols=237 Identities=12% Similarity=0.012 Sum_probs=140.9
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEe
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~ 151 (643)
...-..|+-.+||..-+++...+.|--.|-.+++.+..-.+....-..|..-+|+..-++-+.. -|.-.|-++.++...
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f 139 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF 139 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe
Confidence 3456678889999888888888888888988888777766666677778888888776654433 344455555443332
Q ss_pred ---ecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeec-cCCCeEEEEEcCCCCEEEEEECCCcEEEEEC
Q 006497 152 ---KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227 (643)
Q Consensus 152 ---~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~-~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~ 227 (643)
.+..........|.+++++.+++.. |.---.|-.+. .+.++.. ....-..|+..+||..-++.-.+..|-..|.
T Consensus 140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~~-~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp 217 (353)
T COG4257 140 PLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPARN-VISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDP 217 (353)
T ss_pred ecccccCCCcccceeeCCCccEEEeecc-ccceecCcccC-ceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccc
Confidence 2334456777888888888777652 21111121111 1222221 2334567888999998888778888888887
Q ss_pred CCCceeEEe--ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 228 KSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-LESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 228 ~~~~~~~~~--~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
.++.....- +........+.-++.+..-++....+.+.-||-.+..- ...+-+.+..-.++.+.. .+..-.+--..
T Consensus 218 ~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~-~grVW~sea~a 296 (353)
T COG4257 218 FAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR-HGRVWLSEADA 296 (353)
T ss_pred ccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc-CCcEEeecccc
Confidence 766322111 22233345555566777777766677777777654321 122223334445555543 33333333334
Q ss_pred CcEEEEEC
Q 006497 305 GSIFHWLV 312 (643)
Q Consensus 305 g~I~iwd~ 312 (643)
|.|.-+|-
T Consensus 297 gai~rfdp 304 (353)
T COG4257 297 GAIGRFDP 304 (353)
T ss_pred CceeecCc
Confidence 45555554
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=94.77 E-value=1.5 Score=38.51 Aligned_cols=116 Identities=8% Similarity=0.086 Sum_probs=75.0
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEeCCCC--------ceEEEEccCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEE
Q 006497 76 NRVLWTPTGRRLITGSQSGEFTLWNGQSF--------NFEMILQAHDHAIRSMVWSH-----NDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~dg~I~iwd~~~~--------~~~~~l~~h~~~V~~l~~s~-----~~~~L~sg~~dg~V~iwd 142 (643)
..-.|......|++++..|+|.|++.... ..+..+ .-+..|++|+--+ +.+.|+.|+. ..|..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 34456666678999999999999985532 223333 3567788876433 3456777665 5699999
Q ss_pred CCCCceEEeecCCCCCeEEEEEecC---CCEEEEEeCCCcEEEEECCCCeeeeEe
Q 006497 143 NNMNNVKANKSAHKESVRDLSFCRT---DLKFCSCSDDTTVKVWDFARCQEERSL 194 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~~I~~l~~s~d---~~~l~s~s~dg~I~iwdl~~~~~~~~~ 194 (643)
++.+.-+.. +...+.|.++.+-.- ..-|+..+.+..|.-||.+..+...+.
T Consensus 80 V~~N~d~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 80 VENNSDLFY-KEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred cccCchhhh-hhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 987765554 344577888877432 233555666777888887665554443
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.2 Score=49.98 Aligned_cols=111 Identities=14% Similarity=0.183 Sum_probs=72.4
Q ss_pred CCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc-cCCCCEEEEEEc--CCCCEEEEEeCCCcEEEEECC-----
Q 006497 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWS--HNDNWMVSGDDGGAIKYWQNN----- 144 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~~~~~L~sg~~dg~V~iwd~~----- 144 (643)
..++-+.-|.-++..++-+...++.|||...+..+.... ...+.|.++.|. ++++.+++.+....|.++.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 344555555545544444445579999998876554433 357889999995 478888888889999998421
Q ss_pred -C---CceEEe--ecCCC-CCeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 006497 145 -M---NNVKAN--KSAHK-ESVRDLSFCRTDLKFCSCSDDTTVKVWDF 185 (643)
Q Consensus 145 -~---~~~~~~--~~~~~-~~I~~l~~s~d~~~l~s~s~dg~I~iwdl 185 (643)
. ...+.. +..+. ..|.+..|..+|..++.+ ++.+.|+|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 1 111111 22333 679999999998766554 467888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.95 Score=47.49 Aligned_cols=140 Identities=11% Similarity=0.125 Sum_probs=91.1
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCC--ceeEEe-ccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeE----
Q 006497 202 KSVDWHPTKSLLVSGGKDSLVKLWDAKSG--RELCSF-HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE---- 274 (643)
Q Consensus 202 ~~l~~sp~~~~l~sgs~dg~I~iwD~~~~--~~~~~~-~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~---- 274 (643)
+.+-|+..++.|++ ...|.+.=|.++.. ...-++ ...++.|.+|.|++|.+.|++--.|..|.+++....+.
T Consensus 26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 45555544444443 34455556655421 222222 23566899999999999999999999999999743222
Q ss_pred EEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEE
Q 006497 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGS 345 (643)
Q Consensus 275 ~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs 345 (643)
..+.+.....|....|+. + .-+|..+ +.-+.+|.+...+...+....|+..|+-..|+++.+.+.-++
T Consensus 105 ~~~ck~k~~~IlGF~W~~-s-~e~A~i~-~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTS-S-TEIAFIT-DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEec-C-eeEEEEe-cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 222333445688999986 3 4444444 335677877777777777777888999999999876554433
|
|
| >KOG2893 consensus Zn finger protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.29 Score=46.33 Aligned_cols=6 Identities=0% Similarity=0.147 Sum_probs=2.5
Q ss_pred EEEEec
Q 006497 350 TKFWCR 355 (643)
Q Consensus 350 V~iWd~ 355 (643)
|.||-+
T Consensus 77 veiygm 82 (341)
T KOG2893|consen 77 VEIYGM 82 (341)
T ss_pred EEEeec
Confidence 444443
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.71 E-value=4.6 Score=48.13 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=87.5
Q ss_pred ECCCcEEEEeCCCCceEEEEccCCCCEEEEEEc--------CCCCEEEEEeCCCcEEEEECCC----CceE-----Eeec
Q 006497 91 SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWS--------HNDNWMVSGDDGGAIKYWQNNM----NNVK-----ANKS 153 (643)
Q Consensus 91 s~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~~~~~L~sg~~dg~V~iwd~~~----~~~~-----~~~~ 153 (643)
+.|+++.+|+.+++.....+.+-+..|..|..- +.=++|++.+.--.|.|+-+.. +..- ..+.
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 457889999999988888888877777777653 2223444444445566653221 1110 1222
Q ss_pred CCCCCeEEEEEecCCCEEEEEeCCCcEEEEEC----CC------Ceee--------------eEee-ccCCCeEEEEEcC
Q 006497 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF----AR------CQEE--------------RSLT-GHGWDVKSVDWHP 208 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl----~~------~~~~--------------~~~~-~~~~~V~~l~~sp 208 (643)
.....|+|+....+|+.+++| .|| .||.+ .+ +..+ ..+. .+.+.|..|+++.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 345678899977788766665 455 44543 11 1111 1122 4567899999998
Q ss_pred CCCEEEEEECCCcEEEEECCC
Q 006497 209 TKSLLVSGGKDSLVKLWDAKS 229 (643)
Q Consensus 209 ~~~~l~sgs~dg~I~iwD~~~ 229 (643)
.-+.+.+-++.++|.+||+..
T Consensus 253 SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccceeeeeccCceEEEEEccC
Confidence 888899999999999999976
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=94.69 E-value=6.6 Score=43.17 Aligned_cols=185 Identities=9% Similarity=-0.037 Sum_probs=87.4
Q ss_pred CCCEEEEEeCC-------CcEEEEECCCCceEEeecC--CCC--CeEEEEEecCCCEEEEEeCC-----CcEEEEECCCC
Q 006497 125 NDNWMVSGDDG-------GAIKYWQNNMNNVKANKSA--HKE--SVRDLSFCRTDLKFCSCSDD-----TTVKVWDFARC 188 (643)
Q Consensus 125 ~~~~L~sg~~d-------g~V~iwd~~~~~~~~~~~~--~~~--~I~~l~~s~d~~~l~s~s~d-----g~I~iwdl~~~ 188 (643)
++.+++.|+.+ ..+.+||+++.+-...... ... .....+..-++++++.++.+ +.+.+||+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Confidence 34566666643 2366778776543321110 000 11111112245556666544 46888998775
Q ss_pred eeeeEeec----cCCCeEEEEEcCCCCEEEEEECCC-----cEEEEECCCCceeEEecc------CCCcEEEEEEcCCCC
Q 006497 189 QEERSLTG----HGWDVKSVDWHPTKSLLVSGGKDS-----LVKLWDAKSGRELCSFHG------HKNMVLCVKWNQNGN 253 (643)
Q Consensus 189 ~~~~~~~~----~~~~V~~l~~sp~~~~l~sgs~dg-----~I~iwD~~~~~~~~~~~~------~~~~i~~l~~sp~g~ 253 (643)
+-...... ....-.+++.. ++++++.|+.++ .+..||+.+.+-.. +.. .......+.+ +++
T Consensus 255 ~W~~l~~~~~~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~-~~~~~~~~~~R~~~~~~~~--~gk 330 (470)
T PLN02193 255 EWKLLTPVEEGPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDKKWFH-CSTPGDSFSIRGGAGLEVV--QGK 330 (470)
T ss_pred EEEEcCcCCCCCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCCEEEe-CCCCCCCCCCCCCcEEEEE--CCc
Confidence 43321110 01111222222 456667776543 46788887654221 110 1111122222 566
Q ss_pred EEEEEECC----CcEEEEECCCCeEEEEeec---C-CCCeEEEEEecCCCCEEEEEeCC--------------CcEEEEE
Q 006497 254 WVLTASKD----QIIKLYDIRAMKELESFRG---H-RKDVTALAWHPFHEEYFVSGSLD--------------GSIFHWL 311 (643)
Q Consensus 254 ~l~s~s~d----g~I~iwd~~~~~~~~~~~~---~-~~~I~~l~~sp~~~~~l~sgs~d--------------g~I~iwd 311 (643)
+++.++.+ ..|.+||+.+.+-...-.. . .....+++.. ++++++.|+.+ ..+.+||
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D 408 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV--GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD 408 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEE--CCEEEEECCccCCccccccCccceeccEEEEE
Confidence 66666654 4689999987654322111 1 1111222222 56777777753 2467777
Q ss_pred CCCC
Q 006497 312 VGHE 315 (643)
Q Consensus 312 ~~~~ 315 (643)
..+.
T Consensus 409 ~~t~ 412 (470)
T PLN02193 409 TETL 412 (470)
T ss_pred cCcC
Confidence 7544
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=94.68 E-value=1.3 Score=47.87 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 240 KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 240 ~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
+..|.+++..+..++|++.+.++.|.+||+..
T Consensus 189 ~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 189 RPKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp ---EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hhceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 34489999998889999999999999999974
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.96 Score=53.98 Aligned_cols=230 Identities=13% Similarity=0.072 Sum_probs=103.2
Q ss_pred CCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~ 150 (643)
......++|++...++|.++.+|.|++|....-+.......-.. .+..+.|......+.+...+..+.+|.......+.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~ 114 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF 114 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee
Confidence 34677889999999999999999999997654333222211111 22222222222223333444556666443222211
Q ss_pred eecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeE-EE-EEcCCCCEEEEEECCCcEEEEECC
Q 006497 151 NKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK-SV-DWHPTKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~-~l-~~sp~~~~l~sgs~dg~I~iwD~~ 228 (643)
....+.+....+--.. +.+ .++.+++||.................. .. .+....-.+..--.|-.-.+|-+.
T Consensus 115 ----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 115 ----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred ----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 2233333322211122 334 778888888643221111110000000 00 000000000000000011111111
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEE
Q 006497 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 308 (643)
Q Consensus 229 ~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~ 308 (643)
... ..+..+...+.+..+..... ++.+...+.+.+|+.........+....... +. ++..++++..||.+.
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~v~~h~Dgs~~ 259 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTK-ILIGFNRGLVVIKDRASKYVQSAYLPNGQLE-----SR-DGSHFVSYHTDGSYA 259 (993)
T ss_pred ccc--ccccccccccceeeeecCCC-cceeeeeeeeeehhcccccchhhcccccccC-----cc-CCceEEEEEecCCEE
Confidence 111 12222344455555554444 3334445666667655443333333221111 44 688888999999999
Q ss_pred EEECCCCc
Q 006497 309 HWLVGHET 316 (643)
Q Consensus 309 iwd~~~~~ 316 (643)
+||+..+.
T Consensus 260 fWd~s~g~ 267 (993)
T KOG1983|consen 260 FWDVSSGK 267 (993)
T ss_pred eeecCCCc
Confidence 99987753
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=94.62 E-value=1.3 Score=47.88 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=26.5
Q ss_pred cceEEEEEcCCCCEEEEEECCCeEEEEecCCCCC
Q 006497 327 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 327 ~~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~~~ 360 (643)
..|..+++.+..++|++.+.+|.|.+|++...+.
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~~~ 223 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGPGGS 223 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-SS-E
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeCCCC
Confidence 3599999998889999999999999999976444
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.3 Score=50.06 Aligned_cols=144 Identities=10% Similarity=0.083 Sum_probs=89.0
Q ss_pred CCEEEEEECCCcEEEEECCCCceeE------Eec----------------cCCCcEEEEEEcC--CCCEEEEEECCCcEE
Q 006497 210 KSLLVSGGKDSLVKLWDAKSGRELC------SFH----------------GHKNMVLCVKWNQ--NGNWVLTASKDQIIK 265 (643)
Q Consensus 210 ~~~l~sgs~dg~I~iwD~~~~~~~~------~~~----------------~~~~~i~~l~~sp--~g~~l~s~s~dg~I~ 265 (643)
.++++++. .+.|+||+++.-.... .+. .....|+.|.... +...|++|.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 55666655 5778888876422211 110 0112355555544 456899999999999
Q ss_pred EEECCC-------C----e---------EEEEeecCCCCeEEEEEe--cCCCCEEEEEeCCCcEEEEECCCCcce--EEE
Q 006497 266 LYDIRA-------M----K---------ELESFRGHRKDVTALAWH--PFHEEYFVSGSLDGSIFHWLVGHETPQ--VEI 321 (643)
Q Consensus 266 iwd~~~-------~----~---------~~~~~~~~~~~I~~l~~s--p~~~~~l~sgs~dg~I~iwd~~~~~~~--~~~ 321 (643)
+|.+++ . + ....+. ....++.++++ . ..++||+++....|.||-+...... ..-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceEEEEecCCceEEEEEEecccccccccc
Confidence 997632 1 0 011111 33467888887 5 6778888888888888866442111 111
Q ss_pred ecccCcceEEEEEcCCC---C---EEEEEECCCeEEEEecC
Q 006497 322 HNVHDNTVWDLAWHPIG---Y---LLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 322 ~~~h~~~V~~l~~s~d~---~---~L~sgs~Dg~V~iWd~~ 356 (643)
...+...|-+|+|-.+. . +|++++-.|.|.+|++.
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 11255678889987643 2 78889999999999883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=94.47 E-value=5.2 Score=44.89 Aligned_cols=161 Identities=12% Similarity=0.126 Sum_probs=86.2
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEE--eec-CCCC------CeEEEEEecCCCEEEEEeC-C---Cc
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA--NKS-AHKE------SVRDLSFCRTDLKFCSCSD-D---TT 179 (643)
Q Consensus 113 h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~--~~~-~~~~------~I~~l~~s~d~~~l~s~s~-d---g~ 179 (643)
-++.|..|.|..+++.+++...+|.|.+||...+.... .+. .+.. -|.....-....++++.+. + -.
T Consensus 128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~ 207 (670)
T PF10395_consen 128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS 207 (670)
T ss_pred cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence 36788999999999999999999999999983332221 111 1111 1222211112234444333 2 34
Q ss_pred EEEEEC--CCCeeeeEee---ccCCCe--EEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccC-----C-CcEEEE
Q 006497 180 VKVWDF--ARCQEERSLT---GHGWDV--KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGH-----K-NMVLCV 246 (643)
Q Consensus 180 I~iwdl--~~~~~~~~~~---~~~~~V--~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~-----~-~~i~~l 246 (643)
++++.+ +.. .+..+. .+.... ..+++. +|.+... .+++|.+|++-+.+...++.-. . ..+.++
T Consensus 208 ykL~~l~~~~~-~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 208 YKLISLSNESS-SIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEeccCCc-ceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 666776 222 222221 111122 233333 4543333 6789999999877666554311 1 234444
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCCeEEEEee
Q 006497 247 KWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 247 ~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
.- +..++++.+ .++.|++.|+.-...+.+++
T Consensus 284 ~~-~s~nRvLLs-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 284 KP-PSPNRVLLS-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred ec-CCCCeEEEE-cCCEEEEEeehhhhhhhhhh
Confidence 32 233344433 36789999987655555554
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.44 E-value=1.7 Score=48.23 Aligned_cols=70 Identities=16% Similarity=0.259 Sum_probs=47.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd 142 (643)
..+.-+++|.-+|.+.-++.+..||+|++|+....+..++.. ...+-..+.|... -|+++..|..+.-|.
T Consensus 12 k~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnh--gl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 12 KEDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNH--GLVTATSDRRALAWK 81 (1636)
T ss_pred cccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeecc--ceEEEeccchhheee
Confidence 344557788888999999999999999999976544322221 1223334556533 367777777777775
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.6 Score=49.42 Aligned_cols=111 Identities=8% Similarity=0.165 Sum_probs=74.5
Q ss_pred eEEEEEcC--CCCEEEEEECCCcEEEEECCC-------C----c---------eeEEeccCCCcEEEEEEc--CCCCEEE
Q 006497 201 VKSVDWHP--TKSLLVSGGKDSLVKLWDAKS-------G----R---------ELCSFHGHKNMVLCVKWN--QNGNWVL 256 (643)
Q Consensus 201 V~~l~~sp--~~~~l~sgs~dg~I~iwD~~~-------~----~---------~~~~~~~~~~~i~~l~~s--p~g~~l~ 256 (643)
|+.|.+.. +...|+++.+||.|.+|.+++ . + +...+. ....++.++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 45554433 456899999999999997631 0 0 111122 34568999998 7788899
Q ss_pred EEECCCcEEEEECCCCeE--E-EEeecCCCCeEEEEEecCC--CC---EEEEEeCCCcEEEEEC
Q 006497 257 TASKDQIIKLYDIRAMKE--L-ESFRGHRKDVTALAWHPFH--EE---YFVSGSLDGSIFHWLV 312 (643)
Q Consensus 257 s~s~dg~I~iwd~~~~~~--~-~~~~~~~~~I~~l~~sp~~--~~---~l~sgs~dg~I~iwd~ 312 (643)
+++....|.||-...... . ..-..+...|-+|+|.+++ +. .|++++-.|.+.+|++
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998888888886543211 1 1111366788999998743 22 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.34 E-value=8.1 Score=40.67 Aligned_cols=187 Identities=15% Similarity=0.134 Sum_probs=107.5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEec----CCCE--EEEEe-CC---CcEEEEECCCC-eeeeE
Q 006497 125 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCR----TDLK--FCSCS-DD---TTVKVWDFARC-QEERS 193 (643)
Q Consensus 125 ~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~----d~~~--l~s~s-~d---g~I~iwdl~~~-~~~~~ 193 (643)
...+|+...+++-+.+||++...+. .+. .+.++.+.+-. +++. |+.++ .+ .+|++|.+... ..+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq-~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQ-SLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEE-EE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEE-eec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 4467888888889999999865544 332 23444443321 3332 44444 32 57999987531 22333
Q ss_pred eec-------cCCCeEEEEEc--C-CCC-EEEEEECCCcEEEEECC---CC----ceeEEeccCCCcEEEEEEcCCCCEE
Q 006497 194 LTG-------HGWDVKSVDWH--P-TKS-LLVSGGKDSLVKLWDAK---SG----RELCSFHGHKNMVLCVKWNQNGNWV 255 (643)
Q Consensus 194 ~~~-------~~~~V~~l~~s--p-~~~-~l~sgs~dg~I~iwD~~---~~----~~~~~~~~~~~~i~~l~~sp~g~~l 255 (643)
+.. ....+..+|+- + ++. ++++...+|.+..|.+. ++ +.+++|.. ...+..|.......+|
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRL 222 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCE
Confidence 321 12346677763 3 344 56677888988877664 33 34666663 4578888898888899
Q ss_pred EEEECCCcEEEEECCC-----CeEEEEeec--CCCCeEEEEEec--CCCCE-EEEEeCCCcEEEEECCCC
Q 006497 256 LTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHP--FHEEY-FVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 256 ~s~s~dg~I~iwd~~~-----~~~~~~~~~--~~~~I~~l~~sp--~~~~~-l~sgs~dg~I~iwd~~~~ 315 (643)
+.+-++.-|.-|+.+- .+.+....+ ....|-.|++-. ++..+ |++.-.+++..+|+.+..
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888888752 222333322 345677777753 22334 445546778999998654
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.27 E-value=6.2 Score=39.07 Aligned_cols=235 Identities=10% Similarity=0.014 Sum_probs=136.8
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE--
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS-- 193 (643)
Q Consensus 116 ~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~-- 193 (643)
.-..|+-.+||..-+++...+.|--.|-.+++....-.+....-..|..-+|+...++-+.. .|.-+|-++.+..+.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~l 141 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPL 141 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeec
Confidence 34567778888888888888888888999999888777777777788888888876654333 555556555433221
Q ss_pred -eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEecc-CCCcEEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 006497 194 -LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271 (643)
Q Consensus 194 -~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~-~~~~i~~l~~sp~g~~l~s~s~dg~I~iwd~~~ 271 (643)
.+.-........|+++|++-+++.. |.---.|-.+ ..+..+.. ....-..||..+||..-++.-.++.|...|-.+
T Consensus 142 p~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~ 219 (353)
T COG4257 142 PLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFA 219 (353)
T ss_pred ccccCCCcccceeeCCCccEEEeecc-ccceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEccccc
Confidence 1223456778899999998887753 2211112111 22233321 223456788899999877777777788878766
Q ss_pred CeEEEEee---cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCC
Q 006497 272 MKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 348 (643)
Q Consensus 272 ~~~~~~~~---~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg 348 (643)
+.. ..+. ........+-.++ -+..-++....+.+..+|-....-...-+...+..-.++.....++.-.+--..|
T Consensus 220 ~~a-ev~p~P~~~~~gsRriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~ag 297 (353)
T COG4257 220 GHA-EVVPQPNALKAGSRRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAG 297 (353)
T ss_pred CCc-ceecCCCcccccccccccCc-cCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccC
Confidence 522 1121 1122233343444 5666666666777777776444322222222333445555554444444333344
Q ss_pred eEEEEec
Q 006497 349 TTKFWCR 355 (643)
Q Consensus 349 ~V~iWd~ 355 (643)
.|.-+|-
T Consensus 298 ai~rfdp 304 (353)
T COG4257 298 AIGRFDP 304 (353)
T ss_pred ceeecCc
Confidence 4444443
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=94.24 E-value=7.5 Score=39.93 Aligned_cols=222 Identities=11% Similarity=0.014 Sum_probs=105.0
Q ss_pred CCEEEEEeCCCcEEEEECCC--CceEEeecCCCCCeEEEEEecCCCEEEEEeC-CCcEEEEECCCCee------------
Q 006497 126 DNWMVSGDDGGAIKYWQNNM--NNVKANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQE------------ 190 (643)
Q Consensus 126 ~~~L~sg~~dg~V~iwd~~~--~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~------------ 190 (643)
+++|+.|+++|... .+++. .+.... .+...|+++......+.|++-+. ...|+++|+.....
T Consensus 13 ~~~lL~GTe~Gly~-~~~~~~~~~~~kl--~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~ 89 (302)
T smart00036 13 GKWLLVGTEEGLYV-LNISDQPGTLEKL--IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVI 89 (302)
T ss_pred CcEEEEEeCCceEE-EEcccCCCCeEEe--cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccc
Confidence 36899999999544 44554 233333 35678999999988777666553 34499999833221
Q ss_pred ---eeEeeccCCCeEEEEEcCCC-CEEEEEECCCcEEEEECCCC----ceeEEe---c-cCCCcEEEEEEcC--CCCEEE
Q 006497 191 ---ERSLTGHGWDVKSVDWHPTK-SLLVSGGKDSLVKLWDAKSG----RELCSF---H-GHKNMVLCVKWNQ--NGNWVL 256 (643)
Q Consensus 191 ---~~~~~~~~~~V~~l~~sp~~-~~l~sgs~dg~I~iwD~~~~----~~~~~~---~-~~~~~i~~l~~sp--~g~~l~ 256 (643)
......+.......++.... ..++++....+|.++..... ..++.+ . .....+..+..+. +...|+
T Consensus 90 ~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lc 169 (302)
T smart00036 90 RKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGIC 169 (302)
T ss_pred cccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEE
Confidence 01111222222223333222 23444455566776544321 112110 0 1112233333232 245677
Q ss_pred EEECCCcEEEEECCC--CeEEE---E--eecCC-CCeEEEEEecCCCCEEEEEeCCCcEEEEECCC-CcceEEEecccCc
Q 006497 257 TASKDQIIKLYDIRA--MKELE---S--FRGHR-KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH-ETPQVEIHNVHDN 327 (643)
Q Consensus 257 s~s~dg~I~iwd~~~--~~~~~---~--~~~~~-~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h~~ 327 (643)
+|+..+...++++.. ...-. . ..... ..+..+.+. ++.+|++- |....+-|... ........ .-..
T Consensus 170 vG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~--~~e~Llc~--~~~~v~Vn~~G~~~~r~~~l-~w~~ 244 (302)
T smart00036 170 IGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVP--RDEFLLCY--DEFGVFVNLYGKRRSRNPIL-HWEF 244 (302)
T ss_pred EEEcCCCCeEEEEeecccccccccccccccccccCceEEEEEC--CCeEEEEE--CcEEEEEeCCCCccccceEE-EcCC
Confidence 777653344555432 11000 0 01111 233333333 34444443 33344455533 11111111 1244
Q ss_pred ceEEEEEcCCCCEEEEEECCCeEEEEecCCC
Q 006497 328 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 328 ~V~~l~~s~d~~~L~sgs~Dg~V~iWd~~~~ 358 (643)
...++++. ..+|++-. +..|.||++...
T Consensus 245 ~p~~~~~~--~pyll~~~-~~~ievr~l~~~ 272 (302)
T smart00036 245 MPESFAYH--SPYLLAFH-DNGIEIRSIKTG 272 (302)
T ss_pred cccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence 56777776 45666665 455999999754
|
Unpublished observations. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=94.16 E-value=7.8 Score=45.43 Aligned_cols=114 Identities=8% Similarity=0.033 Sum_probs=68.7
Q ss_pred CCcEEEEEEcC-CCCEEEEEECCCcEEEEECCCCe-----EEEEeecCC----------CCeEEEEEecCCCCEEEEEeC
Q 006497 240 KNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMK-----ELESFRGHR----------KDVTALAWHPFHEEYFVSGSL 303 (643)
Q Consensus 240 ~~~i~~l~~sp-~g~~l~s~s~dg~I~iwd~~~~~-----~~~~~~~~~----------~~I~~l~~sp~~~~~l~sgs~ 303 (643)
......++|+| +.+.||+....|...|||+.... .+....... ..-..+.|.. +.+.|+.++
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~-~~~~lLv~~- 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVS-DSNRLLVCN- 222 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecC-CCCEEEEEc-
Confidence 34567899998 55689999999999999992111 111111111 2234788877 555666655
Q ss_pred CCcEEEEECCCCcceE-EEecccCcceEEEEEcCC--CCEEEEEECCCeEEEEecCC
Q 006497 304 DGSIFHWLVGHETPQV-EIHNVHDNTVWDLAWHPI--GYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 304 dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~s~d--~~~L~sgs~Dg~V~iWd~~~ 357 (643)
...+.++|++...... .........|.++.-+++ +..++.. ...|...++..
T Consensus 223 r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~ 277 (765)
T PF10214_consen 223 RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS 277 (765)
T ss_pred CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence 4578899997765532 222234567888888776 3333322 24565666554
|
These proteins are found in fungi. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.2 Score=47.87 Aligned_cols=91 Identities=13% Similarity=0.240 Sum_probs=50.3
Q ss_pred EEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEee---cCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCC
Q 006497 244 LCVKWNQNGNWVLTASKDQ-----IIKLYDIRAMKELESFR---GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHE 315 (643)
Q Consensus 244 ~~l~~sp~g~~l~s~s~dg-----~I~iwd~~~~~~~~~~~---~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~ 315 (643)
..+.|-|.|..+++-..|| .|.++. ++|-.-..+. .....+..++|+- ....++ ....+.|.+|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfE-rNGLrHGef~lr~~~dEk~~~~~wn~-~s~vla-v~~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFE-RNGLRHGEFDLRVGCDEKAFLENWNL-LSTVLA-VAEGNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEc-cCCcccCCccccCCchhhhhhhhhhH-HHHHHH-HhhcceEEEEEccce
Confidence 3489999999999877555 344444 2332222221 2233456667764 333333 344668999987544
Q ss_pred cceEEEecccCcceEEEEEcCCC
Q 006497 316 TPQVEIHNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 316 ~~~~~~~~~h~~~V~~l~~s~d~ 338 (643)
..-.+... ....+.-+.|++..
T Consensus 327 hWYLK~e~-~ip~~s~vkwhpe~ 348 (1243)
T COG5290 327 HWYLKVER-QIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEEEee-cCCCcceeeecccc
Confidence 32222111 13356778899864
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=1.1 Score=50.27 Aligned_cols=223 Identities=16% Similarity=0.167 Sum_probs=103.0
Q ss_pred EEEEEcCCCCEEEEE-eCCCcEEEEECCCCceEEeecC-CCCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEee
Q 006497 118 RSMVWSHNDNWMVSG-DDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 195 (643)
Q Consensus 118 ~~l~~s~~~~~L~sg-~~dg~V~iwd~~~~~~~~~~~~-~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~ 195 (643)
.++-.+..|...++| +..|.+-+=|.++.-.-+...+ ....|.+++.+.+...++ ..+|.|+-|-++....+....
T Consensus 188 HSvfl~~kgqvY~cGhG~GGRlG~gdeq~~~iPkrV~gL~gh~~~qisvs~~HslvL--T~~g~Vys~GlN~~hqLG~~~ 265 (1267)
T KOG0783|consen 188 HSVFLTEKGQVYVCGHGAGGRLGFGDEQYNFIPKRVPGLIGHKVIQISVSHTHSLVL--TKFGSVYSWGLNGSHQLGLSN 265 (1267)
T ss_pred eeeEecCCCcEEEeccCCCCccCcCcccccccccccccccccceEEEEeecceeEEE--eecceEEEeecCcccccCCcC
Confidence 445555555543333 3345555544443322222233 445688888887765544 468999999886543332211
Q ss_pred -----------------ccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEeccCC-------------CcEEE
Q 006497 196 -----------------GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK-------------NMVLC 245 (643)
Q Consensus 196 -----------------~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~-------------~~i~~ 245 (643)
+.. .|..++ .++.--++-.|..|+.|-++.|+.- +..+. ..|.-
T Consensus 266 ~~~~~~~p~qI~a~r~kg~~-~iIgva---Ag~~hsVawt~~~VY~wGlN~GQlG--i~~n~~~Vt~Pr~l~~~~~~v~~ 339 (1267)
T KOG0783|consen 266 DELKKDDPIQITARRIKGFK-QIIGVA---AGKSHSVAWTDTDVYSWGLNNGQLG--ISDNISVVTTPRRLAGLLSPVIH 339 (1267)
T ss_pred chhhcCchhhhhhHhhcchh-hhhhhh---cccceeeeeecceEEEecccCceec--CCCCCceeecchhhcccccceEE
Confidence 111 122222 1222223334566888888876532 11111 11111
Q ss_pred --------EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEeecCCCCeE-EEEEecCCCCEEEEEeCCCcEEEEECCCCc
Q 006497 246 --------VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT-ALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 246 --------l~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~-~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
|++..++..++.+.......-++....+.+....++-..-+ .+.=.-.....|++-..-|.|+.|+-.+..
T Consensus 340 v~a~~~ATVc~~~~~~i~~~ady~~~k~~~n~~~lks~~V~gg~l~~~~~~~~k~~a~~~kll~lte~g~Vy~w~s~ns~ 419 (1267)
T KOG0783|consen 340 VVATTRATVCLLQNNSIIAFADYNQVKLPFNVDFLKSLKVTGGPLSLTRFNVRKLLASENKLLVLTELGEVYEWDSKNST 419 (1267)
T ss_pred EEecCccEEEEecCCcEEEEecccceecCcchhccceeEEecCccchhhhhhhhcchhhhheeeeccCCeEEEEecCCCc
Confidence 11112222222232222222222233333333222221100 000000023456666778999999975544
Q ss_pred ceEE-EecccCcceEEEEEcCCCCEEEEEECCCeE
Q 006497 317 PQVE-IHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 350 (643)
Q Consensus 317 ~~~~-~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~V 350 (643)
.... +.......|.+|+|.. +.|+.++.||..
T Consensus 420 ~~~c~ftp~r~~~isdIa~~~--N~~~~~t~dGc~ 452 (1267)
T KOG0783|consen 420 RTSCKFTPLRIFEISDIAWTA--NSLILCTRDGCW 452 (1267)
T ss_pred eeeeecccceeeehhhhhhcc--ceEEEEecCcce
Confidence 3222 2222233567888875 567778889943
|
|
| >PRK13979 DNA topoisomerase IV subunit A; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=18 Score=43.07 Aligned_cols=275 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEeCCCCceEEEEc-----cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE---------CC
Q 006497 79 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ---------NN 144 (643)
Q Consensus 79 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~s~~~~~L~sg~~dg~V~iwd---------~~ 144 (643)
.+-++...+++.+.+|.|+-.+.++.+....-. ...+.+..+.-....++|+.-+..|.++... ..
T Consensus 511 dlI~~E~v~v~lS~~GyIKr~~~~~~~~q~~g~~~~~~ke~D~i~~~~~~~T~d~LL~FTn~Gkvy~ikvy~IPe~~~~~ 590 (957)
T PRK13979 511 ELIVVEDVVITLSNEGFIKRIPLKSYNRSNSNVEDIEYREGDFNKFLIQSNTKDTLLIFTDKGNMYQIKGINIPEFKWKE 590 (957)
T ss_pred HcCCCcceEEEEecCCEEEEccccccccccccccccccCCCCceEEEEEEcCCCEEEEEECCCeEEEEEeeeCCCCCcCC
Q ss_pred CCceEEeecC----CCCCeEEEEEe---cCCCEEEEEeCCCcEEEEEC------CCCeeeeEeeccCCCeEEEEEcCCC-
Q 006497 145 MNNVKANKSA----HKESVRDLSFC---RTDLKFCSCSDDTTVKVWDF------ARCQEERSLTGHGWDVKSVDWHPTK- 210 (643)
Q Consensus 145 ~~~~~~~~~~----~~~~I~~l~~s---~d~~~l~s~s~dg~I~iwdl------~~~~~~~~~~~~~~~V~~l~~sp~~- 210 (643)
.+..+..+.. ....|..+.-. .++.+|+.++.+|.|+...+ .++.....+.. .+.+.++.+...+
T Consensus 591 ~G~~I~nll~~~~~~~EkIv~i~~~~ef~~~~~lv~~Tk~G~VKrt~L~ef~~~r~~~~aikL~e-~DeLV~v~~~~~~~ 669 (957)
T PRK13979 591 KGERLDEIIKGIDLESEKIIEAYSIEDFTPQKDFIFITDSGGIKKTSLDKFVTNYTKLMALKLKK-GEKLIKVKLVDRTR 669 (957)
T ss_pred CCeEHHHhhhccCCCCCeEEEEEEeccCCCCCEEEEEECCCeEEEEehhhccccccceEEEEcCC-CCEEEEEEEcCCCC
Q ss_pred --CEEEEEECCCcEEEEECCCCceeEEeccCCCcEEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCeE
Q 006497 211 --SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD--------------QIIKLYDIRAMKE 274 (643)
Q Consensus 211 --~~l~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l~~sp~g~~l~s~s~d--------------g~I~iwd~~~~~~ 274 (643)
..|+..+.+|.+..|+.+ .+.........|..+.+..+...+.....+ +.+.+.|.++...
T Consensus 670 ~~~~Iil~Tk~G~airF~~~---eVr~mGR~a~GVkgI~L~~~D~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 746 (957)
T PRK13979 670 EEKFIKIKTKKGLSFTVEEP---ELEPVDRNIIGYQLFDLLPNDSIKKVDFCDNYEYKEFYVNINKKGIIKISDKDNKSS 746 (957)
T ss_pred CCCEEEEEeCCCcEEEEEHH---HCcccCCCCcCeeeEeeCCCCEEEEEEEEhhhhhcchhhhcccccceeecccccccc
Q ss_pred EE-----------------------------------------EeecCCCCeEEEEEecC-CCCEEEEEeCCCcEEEEEC
Q 006497 275 LE-----------------------------------------SFRGHRKDVTALAWHPF-HEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 275 ~~-----------------------------------------~~~~~~~~I~~l~~sp~-~~~~l~sgs~dg~I~iwd~ 312 (643)
.. .+.....-+.-+.+... .+.+|+..+.+|.|+-..+
T Consensus 747 ~~i~~~T~d~Ll~FTn~Gkvy~ikv~eIPe~~~kG~~i~nll~~l~~~E~Ii~i~~~~~~~~~~~Ll~vTk~G~iKRt~l 826 (957)
T PRK13979 747 ISVFTNSSKNLLIFSDEGKVYKIPAFMLQNIKNEGINISALTGDFEKDEKIIKIISIFEFEEDLSIYFFSKKGLVKKTLL 826 (957)
T ss_pred cceeecCCceEEEEecCCeEEEEEeeecccccccCcCHHHhhcccCCCCeEEEEEeecccCCCceEEEEecCCcEEEeEH
Q ss_pred -----CCCcceEEEecccCcceEEEEEcC-CCCEEEEEECCCeEEEEecCC
Q 006497 313 -----GHETPQVEIHNVHDNTVWDLAWHP-IGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 313 -----~~~~~~~~~~~~h~~~V~~l~~s~-d~~~L~sgs~Dg~V~iWd~~~ 357 (643)
........-+....+.+..+.... ++..|+..+.+|.+.-++.+.
T Consensus 827 sef~~~rr~~~aikLke~~DeLV~v~~v~~~~~eIvL~T~~G~~iRf~~~e 877 (957)
T PRK13979 827 NEFKGEGNSTQAYKFKHKEDELVNVDIKEHEEKNILLITEKGMAIRFKSEA 877 (957)
T ss_pred HHhcccCCCeEEEEecCCCCeEEEEEEecCCCCEEEEEECCCeEEEEEhHH
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.03 Score=58.79 Aligned_cols=231 Identities=11% Similarity=0.190 Sum_probs=132.7
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEeCCCCceEEEEccCCCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceEEeecCC
Q 006497 77 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 155 (643)
Q Consensus 77 ~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s~~~~~L~-sg~~dg~V~iwd~~~~~~~~~~~~~ 155 (643)
...|-+.+.-|+.++.+..|..||-.. +....+. ..+....++|..+++.++ .+-..+.+.+||+++..-...-.+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc-ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 345666666688888888899998543 3333222 355666788988776544 5667789999998765432222222
Q ss_pred CCCeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeEeeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEE
Q 006497 156 KESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS 235 (643)
Q Consensus 156 ~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~ 235 (643)
...-.-+.|++....++.+...+.+.|++-.+.+.+...-.|...+++++|...+. .+.++.|..+.+-...+ +....
T Consensus 117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~v~~qeg-eta~l 194 (615)
T KOG2247|consen 117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLSVTTQEG-ETASL 194 (615)
T ss_pred cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHHHhhhcc-ceeee
Confidence 22222377888888888888899999999887776666666888999999997654 55566666554433322 11111
Q ss_pred e--ccCCC--cEEEE---EEcCCCCEEEEEECCCcEEEE----ECCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCC
Q 006497 236 F--HGHKN--MVLCV---KWNQNGNWVLTASKDQIIKLY----DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLD 304 (643)
Q Consensus 236 ~--~~~~~--~i~~l---~~sp~g~~l~s~s~dg~I~iw----d~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~d 304 (643)
. .+..+ ...++ .|...+..+.+.-. +++.+. +-.++..-..|+...+.+.|+.|-- +..|..+..-
T Consensus 195 tevggepdnm~~~y~k~n~w~kage~m~sVvs-gKkhl~yak~nE~D~pval~fq~~~gni~cyrwyl--Dg~i~igf~a 271 (615)
T KOG2247|consen 195 TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GKKHLMYAKYNELDEPVALQFQEKYGNIHCYRWYL--DGYILIGFDA 271 (615)
T ss_pred eeccCccchhhhheeeeeccccccceeeeeee-cHHHHHHHhhcCCCCccceEeeecCCceeEEEEec--cccccccccc
Confidence 1 11111 11122 23333343332211 111111 1111222236777778888998874 3344445445
Q ss_pred CcEEEEECCC
Q 006497 305 GSIFHWLVGH 314 (643)
Q Consensus 305 g~I~iwd~~~ 314 (643)
|.|..-...+
T Consensus 272 g~iV~iS~h~ 281 (615)
T KOG2247|consen 272 GYIVSISAHN 281 (615)
T ss_pred eeEEEEeccc
Confidence 5555554443
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=3.8 Score=43.62 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=25.8
Q ss_pred CCCEEEEEECC-----------CcEEEEeCCCCceEEEEccCCCCE--EEEEEcCCCCEEEEEeCC
Q 006497 83 TGRRLITGSQS-----------GEFTLWNGQSFNFEMILQAHDHAI--RSMVWSHNDNWMVSGDDG 135 (643)
Q Consensus 83 dg~~L~tgs~d-----------g~I~iwd~~~~~~~~~l~~h~~~V--~~l~~s~~~~~L~sg~~d 135 (643)
++++.+.|+.+ ..+..||..+.+-...-....... .+.+..-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 46666666643 247778876644333211111111 112221467777777754
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.82 E-value=5.2 Score=38.31 Aligned_cols=101 Identities=7% Similarity=0.145 Sum_probs=62.9
Q ss_pred CEEEEEECCCcEEEEeCCC--CceEEEEccCCCCEEEEEEcCCCCEEEEEeCC---C---cEEEE-ECCC----CceEE-
Q 006497 85 RRLITGSQSGEFTLWNGQS--FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG---G---AIKYW-QNNM----NNVKA- 150 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~s~~~~~L~sg~~d---g---~V~iw-d~~~----~~~~~- 150 (643)
+.|+.+...+.|.+|++.+ .+....+.. -+.|..+.++..|++|+|--.+ . .+|+| |++. ...+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4565556778899999883 344555543 4789999999999999986433 2 56665 2211 11111
Q ss_pred eec---------------------CCCCCeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 006497 151 NKS---------------------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR 187 (643)
Q Consensus 151 ~~~---------------------~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~ 187 (643)
.+. .-...+.+++.++....|+.++ ++++.+|.+..
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 111 1234567888887555566555 56788988744
|
|
| >KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription] | Back alignment and domain information |
|---|
Probab=93.74 E-value=3.8 Score=45.94 Aligned_cols=17 Identities=6% Similarity=0.003 Sum_probs=8.1
Q ss_pred EEEEEECCCcEEEEECC
Q 006497 254 WVLTASKDQIIKLYDIR 270 (643)
Q Consensus 254 ~l~s~s~dg~I~iwd~~ 270 (643)
.|++|..+..|+-||+.
T Consensus 423 TLwvG~i~k~v~e~dL~ 439 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLA 439 (894)
T ss_pred eeeeccccchhhHHHHH
Confidence 34444445555555443
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.4 Score=52.59 Aligned_cols=225 Identities=13% Similarity=0.092 Sum_probs=102.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceEEeecCCCC-CeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeeeE
Q 006497 115 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKE-SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 115 ~~V~~l~~s~~~~~L~sg~~dg~V~iwd~~~~~~~~~~~~~~~-~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
.....++|++.-.+++.+..+|.|+++-....+.......... .+..+.+......+.....+..+.+|.......+.
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~- 114 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTGVF- 114 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccceee-
Confidence 3455688889999999999999999996544333322211111 11112221111222333344555666543322111
Q ss_pred eeccCCCeEEEEEcCCCCEEEEEECCCcEEEEECCCCceeEEe--ccCCCcEEEE-EE-cCCCCE-EEEEECCCcEEEEE
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCV-KW-NQNGNW-VLTASKDQIIKLYD 268 (643)
Q Consensus 194 ~~~~~~~V~~l~~sp~~~~l~sgs~dg~I~iwD~~~~~~~~~~--~~~~~~i~~l-~~-sp~g~~-l~s~s~dg~I~iwd 268 (643)
....+.+....+--.+ +.+ .++.+++||..-.. ...+ .......... .+ +..-.+ .... +-.-.+|-
T Consensus 115 ---~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~--~~~~~~~~ 186 (993)
T KOG1983|consen 115 ---LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQ-LSDLKYAGTESSNFVPYESLSPTLSIEGLVI--DLDTVLIS 186 (993)
T ss_pred ---cCCcceeccCCCCcch-hcc-cCceeeEeeechhh-hccceeccccccccceeeeeccceeeecccc--ccccceee
Confidence 2223444433322233 444 77888888865221 1111 1000000000 00 000000 0000 00111111
Q ss_pred CCCCeEEEEeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEecccCcceEEEEEcCCCCEEEEEECCC
Q 006497 269 IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 348 (643)
Q Consensus 269 ~~~~~~~~~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg 348 (643)
+.... ..+..+...+.+..+.. ..-++.+...+.+.+|+.........+. +....++.++..++++..||
T Consensus 187 ~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~v~~h~Dg 256 (993)
T KOG1983|consen 187 LPDAY--LGLSLIEYESLQVLYYS--PTKILIGFNRGLVVIKDRASKYVQSAYL------PNGQLESRDGSHFVSYHTDG 256 (993)
T ss_pred ccccc--ccccccccccceeeeec--CCCcceeeeeeeeeehhcccccchhhcc------cccccCccCCceEEEEEecC
Confidence 11111 12223344455555443 2333344445677777654333222222 22222278899999999999
Q ss_pred eEEEEecCCC
Q 006497 349 TTKFWCRNRP 358 (643)
Q Consensus 349 ~V~iWd~~~~ 358 (643)
.+.+||.+..
T Consensus 257 s~~fWd~s~g 266 (993)
T KOG1983|consen 257 SYAFWDVSSG 266 (993)
T ss_pred CEEeeecCCC
Confidence 9999999764
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.72 Score=54.49 Aligned_cols=147 Identities=12% Similarity=0.091 Sum_probs=0.0
Q ss_pred EEEECCCcEEEEECCCCceeEEeccCCCcEEEE--------EEcCCCCEEEEEECCCcEEEEECCCCeE---------EE
Q 006497 214 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV--------KWNQNGNWVLTASKDQIIKLYDIRAMKE---------LE 276 (643)
Q Consensus 214 ~sgs~dg~I~iwD~~~~~~~~~~~~~~~~i~~l--------~~sp~g~~l~s~s~dg~I~iwd~~~~~~---------~~ 276 (643)
+-.+.|+.+.+|+.+++.....+.+....|..| .|-+.=+++++...--.|.|+-+...+. ..
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccce
Q ss_pred EeecCCCCeEEEEEecCCCCEEEEEeCCCcEEEEECCCCcceEEEec------------------------ccCcceEEE
Q 006497 277 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN------------------------VHDNTVWDL 332 (643)
Q Consensus 277 ~~~~~~~~I~~l~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~------------------------~h~~~V~~l 332 (643)
++......|+|+.... +|++|++|-+| .+|.+--....--+.. .+.++|..+
T Consensus 173 ~i~~dg~~V~~I~~t~-nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTE-NGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred eeecCCceEEEEEecc-CCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Q ss_pred EEcCCCCEEEEEECCCeEEEEecCCCCCcccc
Q 006497 333 AWHPIGYLLCSGSNDHTTKFWCRNRPGDTARD 364 (643)
Q Consensus 333 ~~s~d~~~L~sgs~Dg~V~iWd~~~~~~~~~~ 364 (643)
++.....+|++-++.|+|.+|++...+.....
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r 280 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGGNGLGGPR 280 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccCCCcccee
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 643 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-24 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 7e-14 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-24 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 7e-13 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 2e-22 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 3e-22 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-22 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-22 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-22 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 9e-22 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-21 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-21 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-21 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-21 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-21 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 2e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-21 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 9e-13 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-21 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 9e-13 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 9e-21 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 1e-20 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 3e-20 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 5e-09 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-16 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-11 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 5e-16 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-10 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-16 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 6e-05 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 7e-16 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 6e-05 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 9e-16 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 1e-04 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 9e-16 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 7e-05 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 1e-15 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 2e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 7e-15 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 8e-15 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-11 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 1e-14 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 3e-10 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 5e-08 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 1e-14 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 3e-10 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 5e-08 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 6e-14 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 8e-10 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-07 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 7e-14 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-13 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-12 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 2e-13 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 1e-09 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-13 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-13 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-13 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-06 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-12 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-10 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 9e-06 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-12 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-09 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 2e-12 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 5e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-12 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 7e-12 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 1e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 7e-12 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 7e-12 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 9e-12 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 9e-12 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 3e-11 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-07 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 3e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 5e-11 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-11 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 7e-11 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 3e-10 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 5e-09 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 2e-07 | ||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 3e-10 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 7e-10 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 8e-10 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-09 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 5e-09 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 2e-08 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-08 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-08 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 3e-08 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 3e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 4e-07 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 8e-07 | ||
| 4g56_B | 357 | Crystal Structure Of Full Length Prmt5/mep50 Comple | 6e-06 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-06 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 8e-06 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 9e-06 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 9e-06 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 1e-05 | ||
| 1pi6_A | 615 | Yeast Actin Interacting Protein 1 (Aip1), Orthorhom | 9e-06 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-05 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-05 | ||
| 4i79_A | 399 | Crystal Structure Of Human Nup43 Length = 399 | 2e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 3e-05 | ||
| 3zwl_B | 369 | Structure Of Eukaryotic Translation Initiation Fact | 3e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 6e-05 | ||
| 1pgu_A | 615 | Yeast Actin Interacting Protein 1 (aip1), Se-met Pr | 6e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 8e-05 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 8e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 9e-05 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 1e-04 | ||
| 3vl1_A | 420 | Crystal Structure Of Yeast Rpn14 Length = 420 | 3e-04 | ||
| 3acp_A | 417 | Crystal Structure Of Yeast Rpn14, A Chaperone Of Th | 3e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes From Xenopus Laevis Length = 357 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|4I79|A Chain A, Crystal Structure Of Human Nup43 Length = 399 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
| >pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420 | Back alignment and structure |
|
| >pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s Reg Particle Of The Proteasome Length = 417 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 643 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-41 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-31 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-20 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-37 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-26 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-14 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 6e-28 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-27 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-23 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-27 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-21 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-16 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-06 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-26 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 9e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-12 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-18 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-17 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-14 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-18 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-14 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 7e-10 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-17 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-16 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-12 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-11 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-16 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-07 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-06 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-14 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-09 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 9e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 5e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-14 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-13 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 5e-08 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-14 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-11 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-12 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-12 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-11 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 3e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-12 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-12 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 4e-11 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-10 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 1e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 3e-07 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 1e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 5e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-06 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.001 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 151 bits (380), Expect = 2e-41
Identities = 63/307 (20%), Positives = 130/307 (42%), Gaps = 22/307 (7%)
Query: 67 SLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHND 126
+L+ +R + RV++ P +++ S+ +W+ ++ +FE L+ H +++ + + H+
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ S IK W H +V +S S S D T+K+W+
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131
Query: 187 RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV 246
++ TGH V+ V + +L+ S D V++W + H+++V C+
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 247 KWNQNGNWVL--------------------TASKDQIIKLYDIRAMKELESFRGHRKDVT 286
W ++ + S+D+ IK++D+ L + GH V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVR 251
Query: 287 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 346
+ +H ++ +S + D ++ W ++ ++ N H++ V L +H + +GS
Sbjct: 252 GVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHEHFVTSLDFHKTAPYVVTGSV 309
Query: 347 DHTTKFW 353
D T K W
Sbjct: 310 DQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 122 bits (307), Expect = 2e-31
Identities = 42/224 (18%), Positives = 94/224 (41%), Gaps = 20/224 (8%)
Query: 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 124
+++ + +++ V P G +++ S+ +W Q+ H +R + +
Sbjct: 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 153
Query: 125 NDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC------------------- 165
+ + S + ++ W KA H+ V +S+
Sbjct: 154 DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKS 213
Query: 166 -RTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224
+ S S D T+K+WD + +L GH V+ V +H ++S D +++
Sbjct: 214 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 273
Query: 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
WD K+ R + + + H++ V + +++ +V+T S DQ +K+++
Sbjct: 274 WDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.6 bits (218), Expect = 9e-20
Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 3/176 (1%)
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
K W R E+ +L+GH V V +HP S++VS +D+ +K+WD ++G + GH
Sbjct: 1 KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
+ V + ++ +G + + S D IKL+D + + + + GH +V++++ P + ++ VS
Sbjct: 60 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVS 118
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
S D +I W V H V + + G L+ S SND T + W
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTG-HREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 71.7 bits (174), Expect = 3e-14
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 3/136 (2%)
Query: 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 282
K W + E + GH++ V V ++ + +++AS+D IK++D + +GH
Sbjct: 1 KEWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHT 59
Query: 283 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 342
V +++ + + + HD+ V ++ P G +
Sbjct: 60 DSVQDISFDHSGKLLASCS--ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 343 SGSNDHTTKFWCRNRP 358
S S D T K W
Sbjct: 118 SASRDKTIKMWEVQTG 133
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 140 bits (352), Expect = 2e-37
Identities = 64/285 (22%), Positives = 108/285 (37%), Gaps = 7/285 (2%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
I + W R L++ SQ G+ +W+ + N + + + ++ + N++ G
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 134 DGGAIKYWQ---NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 190
+ N + + A D + + S DTT +WD Q+
Sbjct: 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQ 176
Query: 191 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250
+ TGH DV S+ P L VSG D+ KLWD + G +F GH++ + + +
Sbjct: 177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP 236
Query: 251 NGNWVLTASKDQIIKL--YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIF 308
NGN T S D +L S +T++++ ++G D +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCN 295
Query: 309 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W + HDN V L G + +GS D K W
Sbjct: 296 VWDALKADRAGVLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 109 bits (272), Expect = 9e-27
Identities = 46/249 (18%), Positives = 94/249 (37%), Gaps = 5/249 (2%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 168
L+ H I +M W + +VS G + W + N V ++ +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 169 LKFCSCSDDTTVKVWDFARCQEERSLTGHG---WDVKSVDWHPTKSLLVSGGKDSLVKLW 225
D +++ + ++ S + +V+ D+ LW
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 226 DAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 285
D ++G++ +F GH V+ + + ++ + D KL+D+R ++F GH D+
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 286 TALAWHPFHEEYFVSGSLDGSI-FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 344
A+ + P + F +GS D + L + H+ + +++ G LL +G
Sbjct: 230 NAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 345 SNDHTTKFW 353
+D W
Sbjct: 289 YDDFNCNVW 297
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 107 bits (268), Expect = 4e-26
Identities = 38/172 (22%), Positives = 69/172 (40%), Gaps = 2/172 (1%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
W+ ++ H + S+ + + VSG + K W + + H+
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD--VKSVDWHPTKSLLVSG 216
+ + F F + SDD T +++D QE + + + SV + + LL++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 217 GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
D +WDA GH N V C+ +G V T S D +K+++
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.7 bits (174), Expect = 4e-14
Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 5/223 (2%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 212
H + + + S S D + +WD + ++ V + + P+ +
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111
Query: 213 LVSGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
+ GG D++ +++ K+ L + N ++T+S D L+DI
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171
Query: 270 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 329
++ +F GH DV + FVSG+ D S W V + H++ +
Sbjct: 172 ETGQQTTTFTGHTGDVMS-LSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDI 229
Query: 330 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQ 372
+ + P G +GS+D T + + + +
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.7 bits (161), Expect = 2e-12
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 1/166 (0%)
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKW 248
+ R+L GH + ++ W LLVS +D + +WD+ + ++ + + V+ +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 249 NQNGNWVLTASKDQIIKLYDIRAMKELESF-RGHRKDVTALAWHPFHEEYFVSGSLDGSI 307
+GN+V D I +Y+++ + R L+ F ++ + S +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 308 FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
Q H V L+ P L SG+ D + K W
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.3 bits (147), Expect = 1e-10
Identities = 14/71 (19%), Positives = 30/71 (42%)
Query: 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 130
C I V ++ +GR L+ G +W+ + +L HD+ + + + + +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 131 SGDDGGAIKYW 141
+G +K W
Sbjct: 329 TGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 3e-07
Identities = 18/127 (14%), Positives = 40/127 (31%)
Query: 231 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290
R + GH + + W + +++AS+D + ++D ++ + V A+
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAY 105
Query: 291 HPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTT 350
P G + + L E + +T + + S+ TT
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 351 KFWCRNR 357
Sbjct: 166 CALWDIE 172
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 5e-07
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Query: 272 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 331
M+ + RGH + A+ W VS S DG + W + T +V + + V
Sbjct: 45 MRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMT 102
Query: 332 LAWHPIGYLLCSGSNDHTTKFWCRN 356
A+ P G + G D+ +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLK 127
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 114 bits (284), Expect = 6e-28
Identities = 66/261 (25%), Positives = 105/261 (40%), Gaps = 24/261 (9%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
I V ++P G+ L TG++ +W+ ++ MILQ H+ I S+ + + + +VSG
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ---- 189
++ W S + S D V+VWD
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 190 ---EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE------------LC 234
E S TGH V SV + +VSG D VKLW+ ++
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 235 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF- 293
++ GHK+ VL V QN ++L+ SKD+ + +D ++ L +GHR V ++A
Sbjct: 303 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 362
Query: 294 ----HEEYFVSGSLDGSIFHW 310
F +GS D W
Sbjct: 363 SLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 113 bits (282), Expect = 1e-27
Identities = 66/323 (20%), Positives = 127/323 (39%), Gaps = 46/323 (14%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------------------AHDH 115
+ V ++ G L TG + ++ + L + D
Sbjct: 64 VVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122
Query: 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS 175
IRS+ +S + ++ +G + I+ W + H++ + L + + K S S
Sbjct: 123 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 182
Query: 176 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR---- 231
D TV++WD Q +L+ + +G D V++WD+++G
Sbjct: 183 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 242
Query: 232 ---ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE------------ 276
E S GHK+ V V + ++G V++ S D+ +KL++++
Sbjct: 243 LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEV 302
Query: 277 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA--- 333
++ GH+ V ++A ++EY +SGS D + W P + + H N+V +A
Sbjct: 303 TYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQG-HRNSVISVAVAN 360
Query: 334 ---WHPIGYLLCSGSNDHTTKFW 353
P + +GS D + W
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIW 383
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 99.9 bits (247), Expect = 3e-23
Identities = 55/307 (17%), Positives = 115/307 (37%), Gaps = 40/307 (13%)
Query: 86 RLITGSQSGEFTLWNGQS-FNFEMILQA---HDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141
+ + + L+N ++ L H + + +S++ ++ +G + Y
Sbjct: 30 DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYR 89
Query: 142 QNNMNNVK-----------------ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184
++ + V ++ + +R + F + ++D +++WD
Sbjct: 90 VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149
Query: 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVL 244
+ L GH D+ S+D+ P+ LVSG D V++WD ++G+ + +
Sbjct: 150 IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 209
Query: 245 CVKWNQNGNWVLTASKDQIIKLYDIRAMK-------ELESFRGHRKDVTALAWHPFHEEY 297
+G ++ S D+ ++++D E ES GH+ V ++ + +
Sbjct: 210 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 268
Query: 298 FVSGSLDGSI-----------FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 346
VSGSLD S+ + + H + V +A + SGS
Sbjct: 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK 328
Query: 347 DHTTKFW 353
D FW
Sbjct: 329 DRGVLFW 335
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.6 bits (223), Expect = 4e-20
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 25/197 (12%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW-------QNNMNNVKAN 151
W+ ++ + L D V + ++ +G A++ W +++ +
Sbjct: 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFAR------------CQEERSLTGHGW 199
+ HK+SV + F R S S D +VK+W+ E + GH
Sbjct: 250 GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309
Query: 200 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCV------KWNQNGN 253
V SV ++SG KD V WD KSG L GH+N V+ V N
Sbjct: 310 FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369
Query: 254 WVLTASKDQIIKLYDIR 270
T S D +++ +
Sbjct: 370 VFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.9 bits (164), Expect = 1e-12
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 36/195 (18%)
Query: 40 AAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLW 99
A ++D V ++ + S ++ S+ V++T G+ +++GS LW
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 100 NGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESV 159
N Q+ N + + + + + + ++ V
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDF------------------------------V 311
Query: 160 RDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVD------WHPTKSLL 213
++ + D S S D V WD L GH V SV P ++
Sbjct: 312 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 214 VSGGKDSLVKLWDAK 228
+G D ++W K
Sbjct: 372 ATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (134), Expect = 5e-09
Identities = 27/200 (13%), Positives = 59/200 (29%), Gaps = 27/200 (13%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214
H V + F + + T +V+ + L+ K + T
Sbjct: 61 HTSVVCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNT----- 114
Query: 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 274
S + V ++ +G ++ T ++D++I+++DI K
Sbjct: 115 -------------------SSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI 155
Query: 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 334
+ +GH +D+ + F + ++ D
Sbjct: 156 VMILQGHEQDIYS--LDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213
Query: 335 HPIGYLLCSGSNDHTTKFWC 354
G + +GS D + W
Sbjct: 214 PGDGKYIAAGSLDRAVRVWD 233
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 5e-08
Identities = 20/177 (11%), Positives = 46/177 (25%), Gaps = 32/177 (18%)
Query: 203 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGR----ELCSFHGHKNMVLCVKWNQNGNWVLT 257
+D + + L++ R EL H ++V CVK++ +G ++ T
Sbjct: 20 LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLAT 79
Query: 258 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317
++ ++Y + +
Sbjct: 80 GC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTS----------------------- 115
Query: 318 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGY 374
D + + + P G L +G+ D + W + +
Sbjct: 116 ---SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 112 bits (280), Expect = 1e-27
Identities = 51/310 (16%), Positives = 107/310 (34%), Gaps = 44/310 (14%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
G R+++GS +W+ + L H + S N S D +
Sbjct: 23 LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVW 82
Query: 140 YWQ------------------------------------NNMNNVKANKSAHKESVRDLS 163
+ ++ +
Sbjct: 83 NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRC 142
Query: 164 FCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223
+ S + D VKVWD +L GH V S+ + +VSG D+ ++
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTSIR 200
Query: 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK 283
+WD ++G + + GH+++ ++ N +++ + D +K++DI+ + L++ +G K
Sbjct: 201 VWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNK 258
Query: 284 DVTALAWHPFHEEYFVSGSLDGSIFHWLVG----HETPQVEIHNVHDNTVWDLAWHPIGY 339
+A+ F++ + ++ S DG++ W + VW +
Sbjct: 259 HQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 318
Query: 340 LLCSGSNDHT 349
+ GS + T
Sbjct: 319 VCAVGSRNGT 328
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 94.9 bits (234), Expect = 1e-21
Identities = 55/293 (18%), Positives = 93/293 (31%), Gaps = 46/293 (15%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
W +L+ HD + + N +VSG D +K W H
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 159 VRDLSF--------------------------------------CRTDLKFCSCSDDTTV 180
V + + S S D T+
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 181 KVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHK 240
+VWD Q L GH V +VSG D +VK+WD ++ L + GH
Sbjct: 120 RVWDIETGQCLHVLMGHVAAV--RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300
N +G V++ S D I+++D+ + + GH+ + + VS
Sbjct: 178 NR--VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD---NILVS 232
Query: 301 GSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
G+ D ++ W + + + + + + S+D T K W
Sbjct: 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 77.9 bits (190), Expect = 4e-16
Identities = 42/212 (19%), Positives = 72/212 (33%), Gaps = 45/212 (21%)
Query: 183 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM 242
W + + L GH V + + +VSG D+ +K+W A +G+ L + GH
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 243 VLCVKWNQN--------------------------------------GNWVLTASKDQII 264
V + N V++ S+D +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 265 KLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV 324
+++DI + L GH V + VSG+ D + W ET +H +
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVR---CVQYDGRRVVSGAYDFMVKVWDPETETC---LHTL 173
Query: 325 HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+T + G + SGS D + + W
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 205
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 1e-13
Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 12/164 (7%)
Query: 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 132
+ G +++GS +W+ ++ N L H DN +VSG
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG--MELKDNILVSG 233
Query: 133 DDGGAIKYWQ-NNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191
+ +K W ++ + +K + SDD TVK+WD +
Sbjct: 234 NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293
Query: 192 RSLT-----GHGWDVKSVDWHPTKSLLVSGGKD----SLVKLWD 226
R+L G G V + TK + G ++ + + + D
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMVSGDDGGAI 138
L++G+ +W+ ++ LQ + H N N++++ D G +
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 139 KYWQNNMNNVKAN-----KSAHKESVRDLSFCRTDLKFCSCSDDTT----VKVWDF 185
K W N V + T L S + T + V DF
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 105 bits (262), Expect = 8e-26
Identities = 52/283 (18%), Positives = 98/283 (34%), Gaps = 20/283 (7%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
+++++G + +W+ + + IL H ++ + + S D +
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80
Query: 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 199
L + +CS D ++ VWD A +
Sbjct: 81 DVNTGEMLNT----LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 136
Query: 200 DVKS-VDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 258
+ +VS D +K+W+ + + + +GHK + C+++ V++
Sbjct: 137 HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSG 194
Query: 259 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW-------- 310
S D I+L+DI L GH + V F + VSG+ DG I W
Sbjct: 195 SSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAYDGKIKVWDLVAALDP 251
Query: 311 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
T + H V+ L + + + S S+D T W
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 1e-13
Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 17/179 (9%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
+ +L H A+ + + SGD IK W + + HK
Sbjct: 123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCEFVRTLNGHKRG 180
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218
+ L + D S S D T+++WD R L GH V+ + + + +VSG
Sbjct: 181 IACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSGAY 236
Query: 219 DSLVKLWDAKSGRE---------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYD 268
D +K+WD + + L + H V ++++ ++++S D I ++D
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (162), Expect = 9e-13
Identities = 48/264 (18%), Positives = 86/264 (32%), Gaps = 10/264 (3%)
Query: 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS 211
+S + V L + K S D T+K+WD + +R LTGH V + +
Sbjct: 11 RSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVI 68
Query: 212 LLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271
+ S V + H + L KD+ I ++D+ +
Sbjct: 69 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS----KDRSIAVWDMAS 124
Query: 272 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 331
++ R A+ F ++Y VS S D +I W + ++ +
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF---VRTLNGHKRGI 181
Query: 332 LAWHPIGYLLCSGSNDHTTKFW-CRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 390
L+ SGS+D+T + W + + + +G G
Sbjct: 182 ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIK 241
Query: 391 LPEGPTTPGPFAPGLTRNEGTIPG 414
+ + P AP T T+
Sbjct: 242 VWDLVAALDPRAPAGTLCLRTLVE 265
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.4 bits (160), Expect = 2e-12
Identities = 28/156 (17%), Positives = 51/156 (32%), Gaps = 15/156 (9%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
+ +++ S +WN + F L H I + D +VSG I+
Sbjct: 144 VDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIR 201
Query: 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE-------- 191
W ++ + + + S + D +KVWD +
Sbjct: 202 LW--DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLC 259
Query: 192 -RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
R+L H V + + +VS D + +WD
Sbjct: 260 LRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.2 bits (144), Expect = 2e-10
Identities = 29/163 (17%), Positives = 52/163 (31%), Gaps = 6/163 (3%)
Query: 192 RSLTGHGWDVKSV-DWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQ 250
+ + K V +VSG +D+ +K+WD + GH VLC+++++
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65
Query: 251 NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310
++ + + M F+ V+ S D SI W
Sbjct: 66 RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-----HLRFNNGMMVTCSKDRSIAVW 120
Query: 311 LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ T + + + S S D T K W
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 163
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 84.1 bits (206), Expect = 4e-18
Identities = 33/294 (11%), Positives = 77/294 (26%), Gaps = 34/294 (11%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI--LQAHDHAIRSMVWSHNDNWMVS 131
I+ W ++ + E ++ + + L+ H+ + + W+ + N +V+
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68
Query: 132 GDDGGAIKYWQNNMNNVK--ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189
W K + R + + + KF S + + F +
Sbjct: 69 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128
Query: 190 E----ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLC 245
+ + V S+DWHP LL +G D +++ A
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188
Query: 246 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG 305
V + + S D
Sbjct: 189 PFGELM------------------------FESSSSCGWVHGVCFSANG-SRVAWVSHDS 223
Query: 306 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359
++ + + + + + + L+ +G + F + G
Sbjct: 224 TVCLADADKKMAVATLAS-ETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAG 276
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 81.1 bits (198), Expect = 5e-17
Identities = 43/316 (13%), Positives = 83/316 (26%), Gaps = 32/316 (10%)
Query: 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN 125
L ++ + V W P R++T +W + ++ L +
Sbjct: 45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 104
Query: 126 DNWMVS--GDDGGAIKYW----QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTT 179
N G I +N+ K K + +V L + + + S D
Sbjct: 105 PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK 164
Query: 180 VKVWDFA------------------RCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL 221
+++ + + V V + S + DS
Sbjct: 165 CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST 224
Query: 222 VKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH 281
V L DA + + +L V + + V D L+ + SF G
Sbjct: 225 VCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGR 283
Query: 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIG--- 338
+ + G + ++H N+V ++ G
Sbjct: 284 LDVPKQSSQRGLTARERFQ---NLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAK 340
Query: 339 -YLLCSGSNDHTTKFW 353
C+ D W
Sbjct: 341 CSQFCTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.2 bits (175), Expect = 3e-14
Identities = 25/215 (11%), Positives = 54/215 (25%), Gaps = 7/215 (3%)
Query: 150 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA--RCQEERSLTGHGWDVKSVDWH 207
A S E + ++ + + C ++ V +++ + + + L H V VDW
Sbjct: 1 AYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 208 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-----KDQ 262
P + +V+ G D +W K + + N A
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 263 IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322
I + + + + +GS D + + +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 323 NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357
+ G +R
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR 215
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 19/181 (10%), Positives = 48/181 (26%), Gaps = 6/181 (3%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
+ + + +S N + + + + A ++
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218
+ ++F + D V ++ + + S G K +
Sbjct: 246 LLAVTFITESSLVAAGHDCFPV-LFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNL 304
Query: 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW----VLTASKDQIIKLYDIRAMKE 274
D + + HKN V + G T D + ++D+R+++
Sbjct: 305 DKKASSEGS-AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
Query: 275 L 275
Sbjct: 364 A 364
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.2 bits (136), Expect = 2e-09
Identities = 21/182 (11%), Positives = 52/182 (28%), Gaps = 8/182 (4%)
Query: 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW 122
+ + + ++ V ++ G R+ S L + L + + ++ +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251
Query: 123 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 182
+ + +G D + + K + + + S + + D
Sbjct: 252 ITESSLVAAGHDCF-PVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 310
Query: 183 WDFARCQEERSLTGHGWDVKSVDWHP----TKSLLVSGGKDSLVKLWDAKSGRELCSFHG 238
A + H V + S + G D + +WD +S +
Sbjct: 311 EGSAA-AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES--ALKD 367
Query: 239 HK 240
K
Sbjct: 368 LK 369
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 83.3 bits (204), Expect = 6e-18
Identities = 46/307 (14%), Positives = 98/307 (31%), Gaps = 15/307 (4%)
Query: 54 NPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF-----EM 108
P A+ ++T + + V + R + TG + G +W+ ++
Sbjct: 35 GPGIPRHARQINTLNHGE--VVCAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQL 91
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK--SAHKESVRDLSFCR 166
D+ IRS + ++ G + + W + ++ + L+
Sbjct: 92 DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151
Query: 167 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
SC D + VWD R GH +D + L +GG D+ V+
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR-SW 210
Query: 227 AKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVT 286
H + + + + G W+ + +++ + + H V
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVL 269
Query: 287 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSN 346
+L + ++FVS D + W + + ++V + +GS
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGSG 326
Query: 347 DHTTKFW 353
D +
Sbjct: 327 DKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 27/171 (15%), Positives = 61/171 (35%), Gaps = 3/171 (1%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
W+ + Q H + S++ + +G ++ W
Sbjct: 168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ 226
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218
+ L +C T ++ + +++ ++ L H V S+ + VS GK
Sbjct: 227 IFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGK 285
Query: 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
D+L+ W G + + VL + + +++T S D+ +Y++
Sbjct: 286 DNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.7 bits (140), Expect = 7e-10
Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 7/194 (3%)
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
++ D + ++ +L HG V +V + +GGK VK+WD
Sbjct: 22 QMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYTGGKGC-VKVWDI 79
Query: 228 -----KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR 282
KS N + K +G ++ + + ++D+ A
Sbjct: 80 SHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTS 139
Query: 283 KDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 342
A + H V H + + G L
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLW 199
Query: 343 SGSNDHTTKFWCRN 356
+G D+T + W
Sbjct: 200 TGGLDNTVRSWDLR 213
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 81.8 bits (200), Expect = 3e-17
Identities = 32/252 (12%), Positives = 64/252 (25%), Gaps = 55/252 (21%)
Query: 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDW- 206
AH + +S C + SCS D +KVWD E H + VD
Sbjct: 12 AHDADIFSVSACNSFT--VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 207 ------HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVL---- 256
L+ + + + E K +L ++ W L
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 257 -----------TASKDQIIKLYDIRAMKE------------------LESFRGHRKDVTA 287
++ + +ES + T+
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATS 189
Query: 288 LAWHPFHEEYFVSGSLDGSI-----FHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 342
+ +G +G++ + + N++ + + P G LL
Sbjct: 190 VDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247
Query: 343 SGSNDHTTKFWC 354
+ ++
Sbjct: 248 IAHDSNSFGCIT 259
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.7 bits (192), Expect = 3e-16
Identities = 40/311 (12%), Positives = 82/311 (26%), Gaps = 69/311 (22%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS------AHKESVRDL 162
+AHD I S+ +++ VS G +K W N + + + K HK + +
Sbjct: 9 AGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 163 SFCRT-------DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK----- 210
+ + S + + R E + + D+ D
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 211 ----------SLLVSGGKDSLVKLWDAKSGRE------------------LCSFHGHKNM 242
LV+ +W + + S
Sbjct: 127 WGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF 186
Query: 243 VLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW-----HPFHEEY 297
V ++ G + T + +++ ++ ++ L +F +
Sbjct: 187 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245
Query: 298 FVSGSLDGSIFHW---------------LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC 342
S + H + H + V L+++ G LC
Sbjct: 246 LAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC 305
Query: 343 SGSNDHTTKFW 353
S D +FW
Sbjct: 306 SAGWDGKLRFW 316
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.8 bits (161), Expect = 2e-12
Identities = 40/339 (11%), Positives = 89/339 (26%), Gaps = 75/339 (22%)
Query: 82 PTGRRLITGSQSGEFTLWNGQS----FNFEMILQAHDHAIR---------SMVWSHNDNW 128
++ S G +W+ + + H +
Sbjct: 22 ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 81
Query: 129 MVSGDDGGAIKYWQNNMNNVKA----------NKSAHKESVRDLSFCRTDL-----KFCS 173
+ + G + +++ + + K S L + ++ + +
Sbjct: 82 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVA 141
Query: 174 CSDDTTVKVWDFARCQEE------------------RSLTGHGWDVKSVDWHPTKSLLVS 215
T +W F +E S SVD + L+ +
Sbjct: 142 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-RGLIAT 200
Query: 216 GGKDSLVKL------WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
G + V++ + S + N + VK++ G+ + A +
Sbjct: 201 GFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL 260
Query: 270 ----------------RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
+ + H V +L+++ E S DG + W V
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK 319
Query: 314 HETPQVEIHNVHDNTV----WDLAWHPIGYLLCSGSNDH 348
+ ++ N+H + + LA G L
Sbjct: 320 TKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD 357
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.3 bits (157), Expect = 8e-12
Identities = 27/227 (11%), Positives = 65/227 (28%), Gaps = 43/227 (18%)
Query: 110 LQAHDHAIRSMVWSHNDNWMVSGDDGGAIK------YWQNNMNNVKANKSAHKESVRDLS 163
S+ S + +G + G ++ + + + S+R +
Sbjct: 180 PMTPSQFATSVDISE-RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 164 FCRTDLKFCSCSDDTTV---KVWDFARCQ-------------EERSLTGHGWDVKSVDWH 207
F D + +++ + H V S+ ++
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 208 PTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMV----LCVKWNQNGNWVLTASKDQI 263
+ L S G D ++ WD K+ + + + H + + + +++G+ + +
Sbjct: 299 DSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358
Query: 264 IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW 310
L +K + E LD SI +
Sbjct: 359 KFL---------------KKGWRSGMGAD-LNESLCCVCLDRSIRWF 389
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.5 bits (155), Expect = 1e-11
Identities = 32/216 (14%), Positives = 63/216 (29%), Gaps = 30/216 (13%)
Query: 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD------HAIR 118
S V + G + TG +G + + ++ ++IR
Sbjct: 177 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 235
Query: 119 SMVWSHNDNWMVSGDDGGAIKYWQ----------------NNMNNVKANKSAHKESVRDL 162
S+ +S + + D + + + + AH V L
Sbjct: 236 SVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL 295
Query: 163 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVK----SVDWHPTKSLLVSGGK 218
SF + CS D ++ WD + +L H D++ + L G
Sbjct: 296 SFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354
Query: 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 254
+ + K G + CV +++ W
Sbjct: 355 --VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW 388
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 277 SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHW---LVGHETPQVEIHN-------VHD 326
+ + H D+ +++ + VS S DG + W L+ +E P+ + ++ +H
Sbjct: 9 AGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 327 NTVWDLAW--HPIGYLLCSGSNDHTTKFWCRNRPGDTAR 363
V L+ + S F+ R +T +
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 78.0 bits (190), Expect = 4e-16
Identities = 26/313 (8%), Positives = 66/313 (21%), Gaps = 30/313 (9%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFT--LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS 131
I V + +++ ++ + + + +M N + V
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVV 102
Query: 132 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF------ 185
+D I + + + + D + + +
Sbjct: 103 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162
Query: 186 ---ARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR-------ELCS 235
++ + T + + L SL D +
Sbjct: 163 VYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFV 222
Query: 236 FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK----ELESFRGHRKDVTALAWH 291
K D + + + +
Sbjct: 223 IPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 282
Query: 292 PFHEE--YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 349
E Y+ G + + V +T +V + + DL + +D
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDV--KTRKVTEVKNN---LTDLRLSADRKTVMVRKDDGK 337
Query: 350 TKFWCRNRPGDTA 362
+ +P D
Sbjct: 338 IYTFPLEKPEDER 350
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 66.4 bits (160), Expect = 3e-12
Identities = 12/177 (6%), Positives = 38/177 (21%), Gaps = 18/177 (10%)
Query: 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMI-------LQAHDHAIRSMVW 122
+ + L S + NF + +
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 123 SHNDNWMVSGDDGGAIKYWQNNMNNVKANK-------SAHKESVRDLSFCRTDLKFCSCS 175
+G+ Y +++ NV + +
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 176 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE 232
+ + +D R +T ++ + + ++ D + + + +
Sbjct: 296 EKGVLLKYDVKT----RKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 16/227 (7%), Positives = 49/227 (21%), Gaps = 19/227 (8%)
Query: 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH 124
T + S P G +++ + + + +
Sbjct: 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-ENSHDYAPAFDA 188
Query: 125 NDNWMVSGDDGGAIKYWQNNMNNVKANKSA-------HKESVRDLSFCRTDLKFCSCSDD 177
+ + + N + S + + D
Sbjct: 189 DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYD 248
Query: 178 TTVKVW-------DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSG 230
D + L + + ++ +D K+
Sbjct: 249 LNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 308
Query: 231 RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 277
+ KN + ++ + + V+ D I + + ++ +
Sbjct: 309 KV----TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 51.4 bits (121), Expect = 2e-07
Identities = 21/200 (10%), Positives = 50/200 (25%), Gaps = 12/200 (6%)
Query: 163 SFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-- 220
F D + + D + + ++ V + G
Sbjct: 9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLK--VPEPLRIRYVRRGGDTKVAFIHGTREGD 66
Query: 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRG 280
+ ++D ++G + F + V + ++NG + + A+ I D+ K R
Sbjct: 67 FLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 281 HRKDVTALAWHPFH-------EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 333
+T + E ++ ++ + A
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185
Query: 334 WHPIGYLLCSGSNDHTTKFW 353
+ L S
Sbjct: 186 FDADSKNLYYLSYRSLDPSP 205
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.4 bits (108), Expect = 7e-06
Identities = 16/128 (12%), Positives = 32/128 (25%), Gaps = 11/128 (8%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEM-------ILQAHDHAIRSMVWSHND 126
S N P G N + L++ V
Sbjct: 229 SPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA 288
Query: 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFA 186
+ + G + + V K ++ DL DD + +
Sbjct: 289 AYYQGAPEKGVLLKYDVKTRKVTE----VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
Query: 187 RCQEERSL 194
+ ++ER++
Sbjct: 345 KPEDERTV 352
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.5 bits (98), Expect = 9e-05
Identities = 21/186 (11%), Positives = 44/186 (23%), Gaps = 7/186 (3%)
Query: 203 SVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKD- 261
+ D+ P L++ + D L + V+ +
Sbjct: 7 AEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGDTKVAFIHGTRE 64
Query: 262 -QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE 320
+ +YD R + E F + +V A+ + V+ D +
Sbjct: 65 GDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVAN--DRFEIMTVDLETGKPTV 121
Query: 321 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAV 380
I + + D + G + D E +
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181
Query: 381 FAGRMP 386
+A
Sbjct: 182 YAPAFD 187
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 73.1 bits (177), Expect = 1e-14
Identities = 41/280 (14%), Positives = 74/280 (26%), Gaps = 10/280 (3%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD 133
I + P LI+GS G W+ S + Q H + I S+ S +
Sbjct: 15 GITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 134 DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193
D K A + + D T + +
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN 253
++ V + + + + + G
Sbjct: 126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK 185
Query: 254 WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
+L + + +K + + E+ +GSLD +IF + V
Sbjct: 186 ILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
++ N H + V +L W L+ S D K W
Sbjct: 246 RPMKIIKALNAHKDGVNNLLWETPSTLV-SSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.4 bits (131), Expect = 6e-09
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 2/119 (1%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 168
I + + + + S +
Sbjct: 168 ISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 227
Query: 169 LKFCSCSDDTTVKVWDFARCQEE-RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
+ S DT + ++ R + ++L H V ++ W S LVS G D+ +K W+
Sbjct: 228 DLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP-STLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.9 bits (122), Expect = 9e-08
Identities = 13/158 (8%), Positives = 49/158 (31%), Gaps = 2/158 (1%)
Query: 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 172
++ + + D + + E+ +
Sbjct: 130 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY 189
Query: 173 SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD-AKSGR 231
R + +++ + + + + L+ +G D+ + ++ + +
Sbjct: 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249
Query: 232 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
+ + + HK+ V + W ++++ D IK +++
Sbjct: 250 IIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 5e-06
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQN 251
++++GH + ++ +P L+SG D + W + S + H N+++ + ++
Sbjct: 7 KTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSKA 57
Query: 252 GNWV 255
+
Sbjct: 58 QEYS 61
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (105), Expect = 1e-05
Identities = 20/84 (23%), Positives = 29/84 (34%), Gaps = 11/84 (13%)
Query: 273 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332
+ L++ GH K +TAL +P +SGS DG I W +H H N + L
Sbjct: 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSS------MHQDHSNLIVSL 52
Query: 333 AWHPIGYLLCSGSNDHTTKFWCRN 356
+D
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITK 76
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 29/264 (10%), Positives = 58/264 (21%), Gaps = 28/264 (10%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTD 168
+ H+ I ++ + ++SG G I W + + H + L +
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEW-----SSSSMHQDHSNLIVSLDNSKAQ 58
Query: 169 LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228
WD + G K + V + L
Sbjct: 59 EYSSIS--------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLT--NDDDLLILQS 108
Query: 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 288
++ + V +QN V + I + R + +
Sbjct: 109 FTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYI 168
Query: 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLC------ 342
+ P + + + L E
Sbjct: 169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228
Query: 343 ---SGSNDHTTKFWCRNRPGDTAR 363
+GS D + RP +
Sbjct: 229 LVATGSLDTNIFIYSVKRPMKIIK 252
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.8 bits (101), Expect = 4e-05
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANKSAHKE 157
+ + + ++ + +G I + + +AHK+
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259
Query: 158 SVRDLSFCRTDLKFCSCSDDTTVKVWD 184
V +L + S D +K W+
Sbjct: 260 GVNNLLWET-PSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 8e-05
Identities = 16/128 (12%), Positives = 38/128 (29%), Gaps = 9/128 (7%)
Query: 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 288
L + GH + + N +++ S D I + +M + H + +L
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSL 52
Query: 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 348
E +S + Q ++ + +++ + + L+
Sbjct: 53 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 112
Query: 349 TTKFWCRN 356
K N
Sbjct: 113 IIKSVRLN 120
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.5 bits (173), Expect = 6e-14
Identities = 39/334 (11%), Positives = 90/334 (26%), Gaps = 62/334 (18%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
+ITG+ +++ + F + L HD + ++ ++H + D
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 78
Query: 140 YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERSLTGHG 198
+ + + ++K+ S D T+ VW +
Sbjct: 79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 138
Query: 199 WDVKSVD---------------------WHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 237
+++VSG D+ + +WD + L
Sbjct: 139 DYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 198
Query: 238 GHKNMVLCVKWNQNGNWVLTASKDQIIK-------------------------------- 265
GH + + ++ ++AS D I+
Sbjct: 199 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVS 258
Query: 266 ------LYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV 319
+ A F H +++A+ + VSGS + + +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 317
Query: 320 EIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ +W + + L+ + D +
Sbjct: 318 ANILKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 70.3 bits (170), Expect = 1e-13
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 1/179 (0%)
Query: 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN 249
+ +L GH V + + +++G D +++++D+ + + L GH V +K+
Sbjct: 4 QRTTLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309
G V ++ + + + + +Y V+GS D ++
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 368
W + E+ + HD + Y + + ++
Sbjct: 123 WKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN 181
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 1e-10
Identities = 29/205 (14%), Positives = 64/205 (31%), Gaps = 4/205 (1%)
Query: 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL 212
H SV D + +DD ++V+D + L+GH V ++ + L
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGIL 67
Query: 213 LVSGGKDSLVKLWDAKSGRELCSFHGHK-NMVLCVKWNQNGNWVLTASKDQIIKLYDIRA 271
+ ++ K + L + +N +++T S+D + ++ +
Sbjct: 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPK 127
Query: 272 MKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 331
+ L +H E + G L G + + + +DNT+
Sbjct: 128 ESSVPDHGEEHDYP--LVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185
Query: 332 LAWHPIGYLLCSGSNDHTTKFWCRN 356
+ L + +
Sbjct: 186 WDVAQMKCLYILSGHTDRIYSTIYD 210
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.1 bits (141), Expect = 5e-10
Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 8/237 (3%)
Query: 77 RVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHD-HAIRSMVWSHNDNWMVSGDDG 135
V P + + ++ L + H S + N +VSG
Sbjct: 121 HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYD 180
Query: 136 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT 195
+ W S H + + + + S S DTT+++WD + +L
Sbjct: 181 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ 240
Query: 196 GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWV 255
GH V + + + + + F H + + + +
Sbjct: 241 GHTALVGLLRLSDKFLVSA----AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 256 LTASKDQIIKLYDIRAMKELES-FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWL 311
L + + +Y++R+ K + + + ++ + + + DG F +
Sbjct: 297 LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTLVAAVEKDGQSFLEI 351
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.0 bits (125), Expect = 5e-08
Identities = 36/253 (14%), Positives = 74/253 (29%), Gaps = 7/253 (2%)
Query: 19 YMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRV 78
Y I+ SRD T+ + D P + + R + V
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 164
Query: 79 LWTPT-GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 137
G +++GS +W+ IL H I S ++ H +S
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224
Query: 138 IKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH 197
I+ W + H V S + + R + H
Sbjct: 225 IRIWDLENGELMYTLQGHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH 280
Query: 198 GWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-CSFHGHKNMVLCVKWNQNGNWVL 256
++ ++ ++ G ++ +++ +SG+ + + + + V + V
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VA 339
Query: 257 TASKDQIIKLYDI 269
KD L +
Sbjct: 340 AVEKDGQSFLEIL 352
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.0 bits (172), Expect = 6e-14
Identities = 36/310 (11%), Positives = 87/310 (28%), Gaps = 33/310 (10%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA---HDHAIRSMVWSHNDNWMV 130
I+ + P+ L+ S G T++ + L + H + + N + +
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72
Query: 131 --SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188
G +K + +A + D K + S D ++V D
Sbjct: 73 YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGREL----CSFHG 238
+ + + + ++ + + +S V+ + +
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192
Query: 239 HKNMVLCVKWNQNGNWVLTASKDQIIKLYD---------------IRAMKELESFRGHRK 283
+ + +S D + + R +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 284 DVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCS 343
V ++ + P H ++ + DG I W + ++++V +LC
Sbjct: 253 PVNSIEFSPRH-KFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVV--KIACSDNILCL 309
Query: 344 GSNDHTTKFW 353
++D T K
Sbjct: 310 ATSDDTFKTN 319
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.2 bits (162), Expect = 1e-12
Identities = 27/273 (9%), Positives = 75/273 (27%), Gaps = 28/273 (10%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA---NKSAHKESVRDLSFC 165
I QA I + + + ++ G++ ++ ++ +K + +F
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65
Query: 166 RTD--LKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK 223
+ +KV + L++ D L++
Sbjct: 66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE 125
Query: 224 LWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELES 277
+ D ++ + + K + N + ++ + ++ + + ++
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 278 ---FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG--------------HETPQVE 320
G + + +A P +E + S+DG +
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL 245
Query: 321 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
V + + P L + +D W
Sbjct: 246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW 278
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 4e-12
Identities = 23/195 (11%), Positives = 60/195 (30%), Gaps = 24/195 (12%)
Query: 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKA----NKSAHKESVRDLSFCRTD 168
+ N + ++ G + +++++ + + +
Sbjct: 147 TKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ 206
Query: 169 LKFCSCSDDTTVKVWD---------------FARCQEERSLTGHGWDVKSVDWHPTKSLL 213
+ S D V V F + T + V S+++ P L
Sbjct: 207 EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFL 266
Query: 214 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273
+ G D ++ W+ ++ +++ +F N VK + N + A+ D K
Sbjct: 267 YTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNA----A 321
Query: 274 ELESFRGHRKDVTAL 288
++ + + +
Sbjct: 322 IDQTIELNASSIYII 336
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 8e-11
Identities = 21/237 (8%), Positives = 53/237 (22%), Gaps = 14/237 (5%)
Query: 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDF---ARCQEERSLTGHGWDV 201
M V+ A K+ + D+ + S D ++ V+ F A+ + + +
Sbjct: 1 MQIVQIE-QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59
Query: 202 KSVDWHP-TKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
++ T + G + D + ++ + + + G+ L A+
Sbjct: 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS 119
Query: 261 DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL------DGSIFHWLVGH 314
+ + + S + + + +
Sbjct: 120 WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179
Query: 315 ETPQVEIHNVHD---NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNM 368
S D + GD
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 8/51 (15%), Positives = 17/51 (33%)
Query: 319 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMG 369
V+I + + D+ P LL S D + + + ++
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 67.1 bits (162), Expect = 1e-12
Identities = 29/319 (9%), Positives = 74/319 (23%), Gaps = 49/319 (15%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFN-FEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGA 137
+I + + + S ++ + + + + ++ V + G
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 138 IKYWQNNMNNVKA------NKSAHKESVRDLSFCRTDLKFCSCSDDTT------------ 179
I + S+ + + + + T
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 180 VKVWDFARCQEERSLTGHGWD--VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH 237
++V+ A E + + V + SL V+G + + K L +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183
Query: 238 G----------------------HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK-E 274
+ ++ + TA D++ K
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 243
Query: 275 LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 334
+ F + P + + D+T + +A+
Sbjct: 244 TQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAF 299
Query: 335 HPIGYLLCSGSNDHTTKFW 353
G L G + +
Sbjct: 300 DKKGDKLYLGGTFNDLAVF 318
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 53.2 bits (126), Expect = 4e-08
Identities = 17/224 (7%), Positives = 48/224 (21%), Gaps = 8/224 (3%)
Query: 16 VVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSI 75
R+ L+ A V P + +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 76 NRVLWTPTGRRLIT-----GSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 130
+ TG+ + ++ G + + + +
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 131 SGDDGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQ 189
+ D + A E D + + +D + +
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRK 283
Query: 190 EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
++ V + L GG + + +++ + ++
Sbjct: 284 LIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 10/114 (8%), Positives = 30/114 (26%), Gaps = 6/114 (5%)
Query: 246 VKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLD 304
+++ + + + D+ + +S + P + +V +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 305 GSIFHW-----LVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
G I+ + +++ A P G + + N
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 12/161 (7%), Positives = 32/161 (19%), Gaps = 8/161 (4%)
Query: 206 WHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWNQNGNWVL-TASKDQI 263
++ + + + D S S K + +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 264 IKLYDIRAMKEL------ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETP 317
I D+ K + + + A P +E + + + + V
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 318 QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358
+ P+ + +
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 6/136 (4%), Positives = 33/136 (24%), Gaps = 1/136 (0%)
Query: 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVW 122
+ ++ + + T + + ++ A +
Sbjct: 199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 258
Query: 123 SHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKV 182
+ + + + + + ++F + K + V
Sbjct: 259 RSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAV 317
Query: 183 WDFARCQEERSLTGHG 198
++ ++ +++ G
Sbjct: 318 FNPDTLEKVKNIKLPG 333
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.5 bits (160), Expect = 2e-12
Identities = 44/285 (15%), Positives = 76/285 (26%), Gaps = 12/285 (4%)
Query: 80 WTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIK 139
TP G ++ + + + S I H H S + + SGD G ++
Sbjct: 25 NTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR 83
Query: 140 YWQNNMNNVKANK-----SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 194
W S + + S + +
Sbjct: 84 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT 143
Query: 195 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 254
++SG D+ V +++ + +F H V V++N +G+
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203
Query: 255 VLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH------EEYFVSGSLDGSIF 308
+ D I LY+ + F A + F S S D +I
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIK 263
Query: 309 HWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
W V + I L L S S + F
Sbjct: 264 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 62.2 bits (149), Expect = 4e-11
Identities = 41/249 (16%), Positives = 84/249 (33%), Gaps = 12/249 (4%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH-----AIRSMVWSHNDNW 128
+P+G +G G +W+ + I S
Sbjct: 60 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 119
Query: 129 MVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARC 188
+ G + + + + + + S SDD TV +++
Sbjct: 120 VGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 179
Query: 189 QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL-------CSFHGHKN 241
+ + + H V SV ++P SL S G D + L++ G + H
Sbjct: 180 KFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 239
Query: 242 MVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301
V + W+ +G + +AS D+ IK++++ +K ++ + + ++ VS
Sbjct: 240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI 299
Query: 302 SLDGSIFHW 310
S +G I
Sbjct: 300 SANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.4 bits (126), Expect = 3e-08
Identities = 14/172 (8%), Positives = 41/172 (23%), Gaps = 1/172 (0%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
+ + R + G +++ + + +
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218
F T + + H V + W P + + S
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 219 DSLVKLWDAKSGRELCSFHGHKNM-VLCVKWNQNGNWVLTASKDQIIKLYDI 269
D +K+W+ + + + + + +++ S + I +
Sbjct: 259 DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (124), Expect = 6e-08
Identities = 14/158 (8%), Positives = 36/158 (22%), Gaps = 3/158 (1%)
Query: 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260
+ P + S V S + + H + K + +G + +
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 261 DQIIKLY--DIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQ 318
++++ + V ++W + G H +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 319 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
+ + + P +D T
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 176
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.9 bits (104), Expect = 2e-05
Identities = 25/234 (10%), Positives = 50/234 (21%), Gaps = 4/234 (1%)
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218
L K C+ + V + T H P+ SG
Sbjct: 20 AVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 219 DSLVKLWDAKSGRELCSFHG---HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 275
V++WD + + +++ + +
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 276 ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 335
+ + + D + G H V + ++
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 336 PIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNF 389
P G L S D T + T + + +N + G
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 252
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 66.2 bits (159), Expect = 2e-12
Identities = 37/283 (13%), Positives = 75/283 (26%), Gaps = 4/283 (1%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQS-FNFEMILQAHDHAIRSMVWSHNDNWMVSG 132
+I + + G+ L + G W+ + + + H I + + +
Sbjct: 14 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVS 73
Query: 133 DDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEER 192
D + A+K S + L + + + E
Sbjct: 74 WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133
Query: 193 SLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG 252
++ + V + ++ K + KL A H + + N
Sbjct: 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193
Query: 253 NWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312
S+ I + A +GSLD S+ W +
Sbjct: 194 LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253
Query: 313 --GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
+ P + ++V + W + S D KFW
Sbjct: 254 NKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVSAGQDSNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.6 bits (142), Expect = 3e-10
Identities = 32/253 (12%), Positives = 71/253 (28%), Gaps = 2/253 (0%)
Query: 109 ILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ-NNMNNVKANKSAHKESVRDLSFCRT 167
+ H+ AI ++ S + + S D G I W + + + H + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
+ S D +KV + S + +
Sbjct: 67 G-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125
Query: 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287
G+ + + + + ++ V + ++ E+++ + +
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185
Query: 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND 347
+ S + E H V ++W P L +GS D
Sbjct: 186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD 245
Query: 348 HTTKFWCRNRPGD 360
++ W N+P D
Sbjct: 246 NSVIVWNMNKPSD 258
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.6 bits (142), Expect = 3e-10
Identities = 20/197 (10%), Positives = 48/197 (24%), Gaps = 1/197 (0%)
Query: 191 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF-HGHKNMVLCVKWN 249
++ GH + ++ L S + + WD +G F H M+ +K
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 250 QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309
G+ + D + + + + ++ L + + I
Sbjct: 65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124
Query: 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMG 369
+ G T +N + + S + + +
Sbjct: 125 YSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 370 QNQGYGEQNAVFAGRMP 386
V +
Sbjct: 185 VAFSNNGAFLVATDQSR 201
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.1 bits (120), Expect = 2e-07
Identities = 22/221 (9%), Positives = 55/221 (24%), Gaps = 4/221 (1%)
Query: 155 HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVDWHPTKSLL 213
H +++ LS S + + WD + R H + + L
Sbjct: 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70
Query: 214 VSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273
D L + SG + +K + + + + +
Sbjct: 71 TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130
Query: 274 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLA 333
+ + + +A + V G + L G +V+
Sbjct: 131 ---TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAF 187
Query: 334 WHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGY 374
+ +L+ + + + N + + +
Sbjct: 188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVA 228
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.4 bits (113), Expect = 1e-06
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 1/103 (0%)
Query: 273 KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332
+ GH K +TAL+ + S +G I W + +VH + +
Sbjct: 3 SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61
Query: 333 AWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 375
G L +DH D+++ N +Q G
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 104
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.3 bits (110), Expect = 3e-06
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 4/131 (3%)
Query: 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKES 158
S ++ A ++ N + + H
Sbjct: 167 GASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAK 226
Query: 159 VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHPTKSLLVS 215
V +S+ +++ + S D +V VW+ + + + V SV W ++ +VS
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETTIVS 285
Query: 216 GGKDSLVKLWD 226
G+DS +K W+
Sbjct: 286 AGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.5 bits (108), Expect = 5e-06
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 2/150 (1%)
Query: 122 WSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVK 181
+ A SV + +
Sbjct: 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYS 207
Query: 182 VWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELC--SFHGH 239
V + S T H V V W P L +G D+ V +W+ + H
Sbjct: 208 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH 267
Query: 240 KNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269
+ N +++A +D IK +++
Sbjct: 268 AMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 66.4 bits (161), Expect = 4e-12
Identities = 28/226 (12%), Positives = 60/226 (26%), Gaps = 20/226 (8%)
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDA 227
+L + D + + D + + + L G+ V + L G+D V + D
Sbjct: 32 NLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDL 90
Query: 228 KSGR-----ELCSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKLYDIRAMKELESFRGH 281
E+ +++ + + A + D ++ +
Sbjct: 91 WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150
Query: 282 RKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT------------V 329
+HP + S F V ET ++ + + D +
Sbjct: 151 GMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-ETGKILLVDYTDLNNLKTTEISAERFL 209
Query: 330 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDKFNMGQNQGYG 375
D + +N + G + GQ G
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG 255
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.2 bits (106), Expect = 2e-05
Identities = 19/213 (8%), Positives = 54/213 (25%), Gaps = 18/213 (8%)
Query: 78 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGA 137
+ R IT + + + + ++ N G
Sbjct: 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWAT 271
Query: 138 IKYWQNNMNNVKANKSAHKE---SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL 194
+++ + + H + + D + + ++ + +L
Sbjct: 272 SHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYV------DATL 325
Query: 195 TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNW 254
SV + G D K + V+ ++N++G
Sbjct: 326 NPEAEISGSVA-VFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR---VVQGEFNKDGTE 381
Query: 255 VL-----TASKDQIIKLYDIRAMKELESFRGHR 282
V ++ + + D + ++ + R
Sbjct: 382 VWFSVWNGKDQESALVVVDDKTLELKHVIKDER 414
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 63.0 bits (152), Expect = 4e-11
Identities = 24/193 (12%), Positives = 59/193 (30%), Gaps = 8/193 (4%)
Query: 167 TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWD 226
+L + D + + D + + + V + L+ G+D+ + + D
Sbjct: 31 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMID 89
Query: 227 AKSGR-----ELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRG 280
+ E+ +++ + + + + D ++ +
Sbjct: 90 LWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST 149
Query: 281 HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYL 340
V +HP + S + F V ET +V + N D +
Sbjct: 150 RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-ETGKVLLVNYKDIDNLTVTSIGAAPF 208
Query: 341 LCSGSNDHTTKFW 353
L G D + +++
Sbjct: 209 LADGGWDSSHRYF 221
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 24/271 (8%), Positives = 60/271 (22%), Gaps = 38/271 (14%)
Query: 78 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-----AHDHAIRSMVWSHNDNWM-VS 131
+ +GR L+ + + + + + + S + D +
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126
Query: 132 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT----------DLKFCSCSDDTTVK 181
K S +V ++ + + T K
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGK 186
Query: 182 VWDFAR---CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCS 235
V + G + W + ++ +S R L
Sbjct: 187 VLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 246
Query: 236 FHGHKNMVLCVKWNQNGNWVLTAS----------KDQIIKLYDIRAMKELESFRGHRKDV 285
+ + + ++ K + A K++ +G
Sbjct: 247 VGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGS 306
Query: 286 TALAWHPFHEEYFV------SGSLDGSIFHW 310
+ HP +V + S+ +
Sbjct: 307 LFIKTHPKSSHLYVDTTFNPDARISQSVAVF 337
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 41.1 bits (95), Expect = 3e-04
Identities = 23/219 (10%), Positives = 53/219 (24%), Gaps = 34/219 (15%)
Query: 98 LWNGQSFNFEMILQAHDHAIRSMVWSHNDN-WMVSGDDGGAIKYWQNNMNNVKANKSAHK 156
+ N + + W + +M + ++ + + + A K
Sbjct: 190 VNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249
Query: 157 ESVRDLSFCRTDLKFCSC------------SDDTTVKVWDFARCQEERSLTGHGWDVKSV 204
K+ T K ++ L G G +
Sbjct: 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFI 309
Query: 205 DWHPTK-------SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM---------VLCVKW 248
HP + V ++D K+ V+ ++
Sbjct: 310 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369
Query: 249 NQNGNWVL-----TASKDQIIKLYDIRAMKELESFRGHR 282
N+ G+ V + + + D + +K + R
Sbjct: 370 NKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 31/258 (12%), Positives = 71/258 (27%), Gaps = 22/258 (8%)
Query: 75 INRVLWTPT--GRRLITGSQSGEFTLWNGQSFNFEMIL--------QAHDHAIRSMVWSH 124
+ V ++P + L +G +SG+ +W + Q I + W
Sbjct: 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF 125
Query: 125 NDNWMVSGDDGGAIK------YWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178
+ +G N++ V + S +
Sbjct: 126 EGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 185
Query: 179 TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW----DAKSGRELC 234
+ F +R+ G V+ V++ P V + + +
Sbjct: 186 FYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIE 245
Query: 235 SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHR--KDVTALAWHP 292
+ + T D I+++D+ K ++ + + +
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305
Query: 293 FHEEYFVSGSLDGSIFHW 310
+S SLDG++ +
Sbjct: 306 TGNGRIISLSLDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 60.3 bits (144), Expect = 2e-10
Identities = 37/308 (12%), Positives = 82/308 (26%), Gaps = 27/308 (8%)
Query: 72 RCSINRVLWTPTGRRLITGSQSGEF-TLWNGQSFNFEMILQAHDH---AIRSMVWS--HN 125
R + + PT + F + ++Q H + ++ +S
Sbjct: 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76
Query: 126 DNWMVSGDDGGAIKYWQNN--------MNNVKANKSAHKESVRDLSFCRTDLKF--CSCS 175
++ SGD+ G + W NVK+ + D+S+ +
Sbjct: 77 SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136
Query: 176 DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVK----LWDAKSGR 231
D + ++GH + + ++ + D K
Sbjct: 137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA 196
Query: 232 ELCSFHGHKNMVLCVKWNQ---NGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTAL 288
+ H + V V+++ + + + +
Sbjct: 197 SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256
Query: 289 AWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW---HPIGYLLCSGS 345
A + F + D +I W V V+ + + + + S S
Sbjct: 257 ALSWLDSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVATGNGRIISLS 315
Query: 346 NDHTTKFW 353
D T F+
Sbjct: 316 LDGTLNFY 323
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 5e-09
Identities = 19/210 (9%), Positives = 49/210 (23%), Gaps = 13/210 (6%)
Query: 73 CSINRVLWTPTGRRLITGSQSGEFTL--WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV 130
I+ + W GRRL + + + S N + H I + +
Sbjct: 116 GPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS 175
Query: 131 SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC--------RTDLKFCSCSDDTTVKV 182
+ + + S +
Sbjct: 176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235
Query: 183 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM 242
+ + G D+ +++WD + + + + K
Sbjct: 236 KSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295
Query: 243 VLCVKWN---QNGNWVLTASKDQIIKLYDI 269
+ + +++ S D + Y++
Sbjct: 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.8 bits (122), Expect = 1e-07
Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 12/142 (8%)
Query: 239 HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK--ELESFRGHRKD-VTALAWHPFH 294
+N + ++ N + K ++ D K + F GH VT + + P
Sbjct: 16 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75
Query: 295 E-EYFVSGSLDGSIFHWLVGHETPQVEI-------HNVHDNTVWDLAWHPIGYLLCSGSN 346
+Y SG G + W + + V + D++W G LC
Sbjct: 76 GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 347 DHTTKFWCRNRPGDTARDKFNM 368
+ + + +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSG 157
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 6e-07
Identities = 22/185 (11%), Positives = 55/185 (29%), Gaps = 15/185 (8%)
Query: 201 VKSVDWHPT-KSLLVSGGKDSLVKLWDAKSGR--ELCSFHGH-KNMVLCVKW--NQNGNW 254
+ + PT ++ GK + V+ D + + F GH ++V VK+ + +
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 255 VLTASKDQIIKLYDIRA--------MKELESFRGHRKDVTALAWHP-FHEEYFVSGSLDG 305
+ + + + ++ + F+ ++ ++W V D
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 306 SIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365
E+ + +D + F+ +A D+
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199
Query: 366 FNMGQ 370
+ Q
Sbjct: 200 THHKQ 204
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.0 bits (120), Expect = 2e-07
Identities = 24/280 (8%), Positives = 60/280 (21%), Gaps = 16/280 (5%)
Query: 78 VLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136
+ P GR T ++S + + + R +S D
Sbjct: 39 PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA---LSPDGKT 95
Query: 137 AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 196
Y + + + + K + A ++ L G
Sbjct: 96 LAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ----ITMLAWARDGSKLYG 151
Query: 197 HGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE--LCSFHGHKNMVLCVKWNQNGNW 254
G D+ +D + + + + ++ +
Sbjct: 152 LGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211
Query: 255 VLTASKDQIIKLYDIRAMK-ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313
+ + D+ + + R + A +P F
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAF-----GAYNVLESFD 266
Query: 314 HETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353
E ++ + + G + G +
Sbjct: 267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.6 bits (114), Expect = 1e-06
Identities = 18/164 (10%), Positives = 37/164 (22%), Gaps = 17/164 (10%)
Query: 210 KSLLVSGGKDSLVKLWDAKSGREL--CSFHGHKNMVLCVKWNQNGNWVL-TASKDQIIKL 266
+ +++ + + + D + + + G T +K + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 267 YDIRAMKELESFRGHR--------------KDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312
D+ + L D LA + ++ L
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120
Query: 313 GHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356
ET + LAW G L D
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAG 164
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 3e-06
Identities = 11/162 (6%), Positives = 34/162 (20%), Gaps = 4/162 (2%)
Query: 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSG 132
+ S E + + A + +
Sbjct: 156 LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT 215
Query: 133 DDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191
+ + + + + ++ +D +
Sbjct: 216 AYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASI 273
Query: 192 RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233
+ + SV+ S + GG + +DA++ +
Sbjct: 274 KRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 50.3 bits (118), Expect = 3e-07
Identities = 25/268 (9%), Positives = 66/268 (24%), Gaps = 4/268 (1%)
Query: 88 ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWM-VSGDDGGAIKYWQNNMN 146
I S+S ++ + S + + V S + + V+ + +
Sbjct: 6 IANSESDNISVIDVTSNKVTATIPVGSNP-MGAVISPDGTKVYVANAHSNDVSII-DTAT 63
Query: 147 NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 206
N S + ++ + + ++ G +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 207 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKL 266
P L + + + + +G V A+ D +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 267 YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 326
+ + +A +P + +V+ ++ T ++
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 327 NTVWDLAWHPIG-YLLCSGSNDHTTKFW 353
+A P G + + S +T
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFCNTVSVI 271
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 14/189 (7%), Positives = 43/189 (22%), Gaps = 2/189 (1%)
Query: 171 FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDAKS 229
+ + S+ + V D + ++ + P + V+ + V + D +
Sbjct: 5 YIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Query: 230 GRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALA 289
+ + + +T + + D + + + + +
Sbjct: 64 NNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLAL 123
Query: 290 WHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHT 349
+ Y + V + Y+ S +
Sbjct: 124 SPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSIS 183
Query: 350 TKFWCRNRP 358
N
Sbjct: 184 VIDTVTNSV 192
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 8e-07
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 27/170 (15%)
Query: 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVS 131
IN ++ RL+ + +G+ + S + + + +A A R+ W V+
Sbjct: 196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255
Query: 132 GDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE 191
Y + + + V V D +
Sbjct: 256 YHRALDRIYLLVDQRDEWR----------------------HKTASRFVVVLDAKTGERL 293
Query: 192 RSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLWDAKSGRELCSFHGH 239
+ S++ L D + + DA+SG EL S +
Sbjct: 294 AKFEMGHE-IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL 342
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 18/189 (9%), Positives = 44/189 (23%), Gaps = 5/189 (2%)
Query: 23 RMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTP 82
+ + + T + A + V + I+ +
Sbjct: 169 SLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL--SSG 226
Query: 83 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142
+ L E +G + H R + + +
Sbjct: 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLD 286
Query: 143 NNMNNVKANKSAHKESVRDLSFCR--TDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWD 200
A + ++ + L + + D T+ + D +E RS+ G
Sbjct: 287 AKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHG 345
Query: 201 VKSVDWHPT 209
+ +
Sbjct: 346 PQVITTADM 354
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 5e-06
Identities = 20/233 (8%), Positives = 57/233 (24%), Gaps = 32/233 (13%)
Query: 78 VLWTPTGRRL-ITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136
+ + L S + + Q A + G
Sbjct: 129 IGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPA 185
Query: 137 AIKYWQNNMNNVKAN------KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 190
++ A A S + + + + A
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 191 ERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-------------------LVKLWDAKSGR 231
+ ++ G+ K+ ++ +V+ K++ A G+
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305
Query: 232 ELCSFHGHKNMVLCVKWNQNGNWVL--TASKDQIIKLYDIRAMKELESFRGHR 282
+ + + Q+G ++ +++ +YD + ++ S +
Sbjct: 306 TSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.5 bits (109), Expect = 6e-06
Identities = 14/206 (6%), Positives = 39/206 (18%), Gaps = 23/206 (11%)
Query: 175 SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--------TKSLLVSGGKDSLVKLWD 226
V+V+D + SV + LL S
Sbjct: 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLS 152
Query: 227 AKSGREL-------CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279
+ C + + + + A +
Sbjct: 153 VPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA----QCTG 208
Query: 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH-NVHDNTVWDLAWHPIG 338
A + + SI + ++ + +++ + G
Sbjct: 209 AQNCSSQAAQANYPGMLVWAV---ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265
Query: 339 YLLCSGSNDHTTKFWCRNRPGDTARD 364
+ + + + +
Sbjct: 266 FQMVAKLKNTDGIMILTVEHSRSCLA 291
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 14/188 (7%), Positives = 42/188 (22%), Gaps = 26/188 (13%)
Query: 48 TVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE 107
A + + A CS G + + S +
Sbjct: 187 LAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMK 246
Query: 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRT 167
+ ++ ++ + MV+ ++
Sbjct: 247 AAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL---------------- 290
Query: 168 DLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHP--TKSLLVSGGKDSLVKLW 225
+ + Q ++ +G D ++ + ++ ++
Sbjct: 291 -------AAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIY 342
Query: 226 DAKSGREL 233
DA S ++
Sbjct: 343 DAASDQDQ 350
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.4 bits (90), Expect = 0.001
Identities = 16/226 (7%), Positives = 49/226 (21%), Gaps = 6/226 (2%)
Query: 171 FCSCSDDTTVKVWDFAR--CQEERSLTGHGWDVKSVDWHPT-KSLLVSGGKDSLVKLWDA 227
+ + + + VW+ + V+ + P + L V + V +
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66
Query: 228 KSGRELCSFHGHK---NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 284
+F + + + G +V S + +
Sbjct: 67 APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126
Query: 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSG 344
+ + + + + V + +++
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP 186
Query: 345 SNDHTTKFWCRNRPGDTARDKFNMGQNQGYGEQNAVFAGRMPGNFP 390
+ + N D K G + + + +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWA 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 643 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.94 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.89 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.79 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.78 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.78 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.64 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.59 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.53 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.37 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.37 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.35 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.35 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.34 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.31 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.28 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.24 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.22 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.19 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.17 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.17 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.13 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.12 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.11 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.06 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.99 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.59 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.25 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.15 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.01 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.0 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 98.0 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.99 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.99 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.97 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.89 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.88 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.77 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.61 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.44 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.19 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.18 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.1 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.08 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.02 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.02 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.63 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.5 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.12 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 94.88 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.42 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.56 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 93.39 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.86 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 91.69 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.87 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 90.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 89.89 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.98 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 87.53 | |
| d1co6a_ | 107 | Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 10 | 84.83 | |
| d1wp5a_ | 323 | Topoisomerase IV subunit A, ParC, C-terminal domai | 82.44 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 81.68 | |
| d1jdla_ | 118 | Cytochrome c2 {Rhodospirillum centenum [TaxId: 340 | 81.06 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-38 Score=295.42 Aligned_cols=280 Identities=18% Similarity=0.309 Sum_probs=252.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-----EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 888776999993899989999789909999099983-----389870379888999991799989999599949999779
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-----FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNN 144 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~-----~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~ 144 (643)
.|...|+|++|++++++|++|+ ||.|+|||+.+.. .......|.+.|.+++|++++++|++++.|+.|++||+.
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCC
T ss_conf 9999289999989999999997-998899773677633116876404889968999986799889886123321111111
Q ss_pred CC--CEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 98--0578534888885799994599989999499919999779982456860269884899995999989999789909
Q 006497 145 MN--NVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 145 ~~--~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I 222 (643)
.. +....+..|...+.+++|++++.++++++.|+.|++|++.+.+.......|...+.+++|++++..+++++.|+.|
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v 207 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111101234443211223566553
Q ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 99988999316796368986799999499999999979992999987998677795068888379999069998999996
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 223 ~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs 302 (643)
++||+++++.+..+. +...|.+++|++++++|++++.|+.+++||+++.+... ...|...|++++|++ ++++|++++
T Consensus 208 ~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~-~g~~l~s~s 284 (337)
T d1gxra_ 208 RSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAY-CGKWFVSTG 284 (337)
T ss_dssp EEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECT-TSSEEEEEE
T ss_pred CCCCCCCCEEECCCC-CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCCCCCCEEEECC-CCCEEEEEE
T ss_conf 211111100000246-66615799971530300000025642111111111000-012456541699989-999999994
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 89959999779996508980335866489999399999999978993999935
Q 006497 303 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 303 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~ 355 (643)
.|+.|++||+.....+... .|...|++++|++++++|++++.|++|++||+
T Consensus 285 ~Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 285 KDNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEC--CCCCCEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 8996999989999799992--69998799999279999999908996999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-38 Score=293.14 Aligned_cols=287 Identities=23% Similarity=0.423 Sum_probs=270.3
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 75068887769999938999899997899099990999833898703798889999917999899995999499997799
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~ 145 (643)
.+|++|++.|++++|++++++|++++.|+.|+|||+.+++.+..+..|...|.+++|++++.+++++..++.+.+|+...
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 90 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 89858888768999938989999993899299998999979999957888677776301111011111111101110011
Q ss_pred CCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 80578534888885799994599989999499919999779982456860269884899995999989999789909999
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLW 225 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iw 225 (643)
.+....+..+...+.++.++++++.+++++.|+.+++||+++.+....+..|...+.+++|++++++|++++.|+.|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~ 170 (317)
T d1vyhc1 91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170 (317)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEEEECCCEEEEE
T ss_conf 11111100000000000016998557765267523575114430346871677763000016679999999279829997
Q ss_pred ECCCCCEEEEECCCCCCEEEEEECCC--------------------CCEEEEEECCCCEEEEECCCCEEEEEEECCCCCE
Q ss_conf 88999316796368986799999499--------------------9999999799929999879986777950688883
Q 006497 226 DAKSGRELCSFHGHKNMVLCVKWNQN--------------------GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDV 285 (643)
Q Consensus 226 d~~s~~~~~~~~~~~~~i~~i~~sp~--------------------g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I 285 (643)
++++.+.+..+..+...+.++.|+++ +.++++++.|+.|++||+++++.+.++..|...|
T Consensus 171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v 250 (317)
T d1vyhc1 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250 (317)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred EECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCE
T ss_conf 51254034788247787337998632564111034563034302588614751699789998889996889996889987
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 799990699989999968995999977999650898033586648999939999999997899399993
Q 006497 286 TALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 286 ~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd 354 (643)
.+++|++ ++.+|++++.||.|++||+.+.+.+. .+..|...|++++|++++++|++++.||+|++||
T Consensus 251 ~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMK-TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEEECS-SSSCEEEEETTTEEEEECCTTSCCCE-EEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEEECC-CCCEEEEEECCCEEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 9999879-99999999798949999999991999-9928999889999949999999992899499829
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-37 Score=286.97 Aligned_cols=289 Identities=23% Similarity=0.404 Sum_probs=248.8
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC------------------CCCCCEEEEEECCCC
Q ss_conf 97506888776999993899989999789909999099983389870------------------379888999991799
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ------------------AHDHAIRSMVWSHND 126 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~------------------~h~~~V~~i~~s~~~ 126 (643)
+..+ +|++.|+|++|++||++|++|+ |+.|+|||+.+++.+..+. .|...|++++|++++
T Consensus 56 ~~~~-~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~ 133 (388)
T d1erja_ 56 HKSL-DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG 133 (388)
T ss_dssp EEEE-ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred EEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 7607-9999689999999999999994-9948999813640576631665443244321110146778988999988999
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 98999959994999977998057853488888579999459998999949991999977998245686026988489999
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDW 206 (643)
Q Consensus 127 ~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~ 206 (643)
++|++++.|+.|++|+....+.......|...|.++++++++..+++++.++.+++||..+.........+...+....+
T Consensus 134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 213 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVS 213 (388)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 80121344411112111111111111111111111011111111112221015654101111110000124544211236
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE-----
Q ss_conf 5999989999789909999889993167963-------6898679999949999999997999299998799867-----
Q 006497 207 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE----- 274 (643)
Q Consensus 207 sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~-------~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~----- 274 (643)
..++++|++++.|+.|++||.+++..+..+. .|...|++++|++++++|++++.|+.|++||+++.+.
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 293 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf 88787589973898199963455730001024433345778987899997999999999789928987515776432101
Q ss_pred -------EEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEE------CCCCCEE
Q ss_conf -------779506888837999906999899999689959999779996508980335866489999------3999999
Q 006497 275 -------LESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW------HPIGYLL 341 (643)
Q Consensus 275 -------~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------s~d~~~L 341 (643)
......|...|++++|++ ++.+|++++.||.|++||+.+.+... .+.+|.+.|+++++ ++++.+|
T Consensus 294 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~-~l~~H~~~V~~~~~~~~~~~spd~~~l 371 (388)
T d1erja_ 294 TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLL-MLQGHRNSVISVAVANGSSLGPEYNVF 371 (388)
T ss_dssp -----CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred CCCCCCEEEECCCCCCEEEEEEECC-CCCEEEEEECCCEEEEEECCCCCEEE-EEECCCCCEEEEEEECCCCCCCCCCEE
T ss_conf 3444200110124553278999889-99999999698979999999996999-996889978999984674258999999
Q ss_pred EEEECCCEEEEEECCC
Q ss_conf 9997899399993579
Q 006497 342 CSGSNDHTTKFWCRNR 357 (643)
Q Consensus 342 ~sgs~Dg~I~iWd~~~ 357 (643)
++++.||+|++|++++
T Consensus 372 ~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 372 ATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEE
T ss_conf 9991899799976214
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-35 Score=273.66 Aligned_cols=289 Identities=24% Similarity=0.378 Sum_probs=257.7
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 79975068887769999938999899997899099990999833898703798889999917999899995999499997
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd 142 (643)
...++|++|.+.|++++|++++++|++|+.||.|+|||..+++.+..+..|...|++++|+++++++++++.|+.+.+|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECCC
T ss_conf 65279888789888999989999999997899555631021025799724653377567601211443101332010133
Q ss_pred CCCCC----EEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 79980----57853488888579999459998999949991999977998245686026988489999599998999978
Q 006497 143 NNMNN----VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 143 ~~~~~----~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~ 218 (643)
..... ....+..|.......... ....+.....+.....++............+...+....+.+...++++++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp SSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEC
T ss_conf 222212221110013542110111111-1111111124454320012322111112331015763001244212687605
Q ss_pred CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE--CCCCCEEEEEEECCCCC
Q ss_conf 9909999889993167963689867999994999999999799929999879986777950--68888379999069998
Q 006497 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GHRKDVTALAWHPFHEE 296 (643)
Q Consensus 219 dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~~~~I~~i~~sp~~~~ 296 (643)
|+.|++||+++++.+..+..|...|++++|++++++|++++.|+.|++||++..+.+..+. .+...|++++|++ ++.
T Consensus 205 d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~ 283 (340)
T d1tbga_ 205 DASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGR 283 (340)
T ss_dssp TTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECS-SSC
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECC-CCC
T ss_conf 7369999999994889995788985899997998999999699969997521221111111224457458999989-999
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9999968995999977999650898033586648999939999999997899399993
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd 354 (643)
+|++++.||.|++||+.+... ...+.+|...|++++|++++.+|++++.||.|++||
T Consensus 284 ~l~~g~~dg~i~iwd~~~~~~-~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 284 LLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEECCCEEEEEECCCCCE-EEEECCCCCCEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 999997979899999999939-899848999789999908999999990699799859
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.6e-37 Score=284.81 Aligned_cols=284 Identities=21% Similarity=0.308 Sum_probs=248.0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 68887769999938999899997899099990999833898703798889999917999899995999499997799805
Q 006497 69 NKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 69 ~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~ 148 (643)
..+++.+.+++++++++.|+.+. ++.|.+|++++.+....+.+|...|++++|++++++|++++.||.|++||+.....
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~ 92 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH 92 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC
T ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCC
T ss_conf 77788759999969989999996-99999999999966179747888889999948999672255673674663101111
Q ss_pred --EEEECCCCCCEEEEEEECCCCEEEEEEC--CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE-EEEEECCCCEE
Q ss_conf --7853488888579999459998999949--991999977998245686026988489999599998-99997899099
Q 006497 149 --KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL-LVSGGKDSLVK 223 (643)
Q Consensus 149 --~~~~~~~~~~I~~l~~s~d~~~l~s~s~--dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~-l~sg~~dg~I~ 223 (643)
...+..|...|.+++|++++++|++++. +..+++|++++.+....+..|...|++++|++++++ |++++.|+.|+
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 00001343357543323331110001111221111111111111111111111111111111211101200011221111
Q ss_pred EEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE-------CCCCCEEEEEEECCCCC
Q ss_conf 99889993167963689867999994999999999799929999879986777950-------68888379999069998
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEE 296 (643)
Q Consensus 224 iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~~I~~i~~sp~~~~ 296 (643)
+||+++++....+..|...|+++.|++++++|++++.|+.|++||.++.+.+..+. +|...|++++|++ ++.
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~-~~~ 251 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGT 251 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-TSS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 1111111111111111111111234764221211111111100012446411222111111100246532102478-899
Q ss_pred EEEEEECCCCEEEEECCCCCCEEEEECCCC--CCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 999996899599997799965089803358--664899993999999999789939999357
Q 006497 297 YFVSGSLDGSIFHWLVGHETPQVEIHNVHD--NTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 297 ~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~ 356 (643)
+|++++.|+.|++||+++.+....+...+. ..+.++.|+ +..|++++.||.|++||.+
T Consensus 252 ~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~--~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT--KQALVSISANGFINFVNPE 311 (311)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC--SSCEEEEETTCCEEEEETT
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEEC--CCEEEEEECCCEEEEEECC
T ss_conf 99999379969999999996999997999863329999951--9999999899979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.2e-36 Score=278.94 Aligned_cols=285 Identities=16% Similarity=0.218 Sum_probs=237.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE
Q ss_conf 88776999993899989999789909999099983--3898703798889999917999899995999499997799805
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN--FEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV 148 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~--~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~ 148 (643)
..++|+|++|++|+++||+++.|+.|+|||..+.+ ....+++|.+.|++++|++++++|++++.|+.|++||+++...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred E--EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEE----EEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 7--853488888579999459998999949991999977998245----6860269884899995999989999789909
Q 006497 149 K--ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEE----RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 149 ~--~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~----~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I 222 (643)
. ..+..|...|.+++|+++++.|++++.|+.|++|+++..... .....|...|.+++|++++++|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 10012232211000111111121100000257630254420334331110010111222111111111110001347679
Q ss_pred EEEECCCC------------------CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCC
Q ss_conf 99988999------------------316796368986799999499999999979992999987998677795068888
Q 006497 223 KLWDAKSG------------------RELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 284 (643)
Q Consensus 223 ~iwd~~s~------------------~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 284 (643)
++||.... ..+.....|...|.+++|++++++|++++.|+.|++||+.+.+.+..+..|...
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 245 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 99840157643100122111111110112440476674789875123321000014786058864101210000014665
Q ss_pred EEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEE----------------------------------------EECC
Q ss_conf 379999069998999996899599997799965089----------------------------------------8033
Q 006497 285 VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVE----------------------------------------IHNV 324 (643)
Q Consensus 285 I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~----------------------------------------~~~~ 324 (643)
|.+++|++ ++.+|++| .|+.+++|..+....... +...
T Consensus 246 v~s~~fs~-d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
T d1k8kc_ 246 LLAVTFIT-ESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323 (371)
T ss_dssp EEEEEEEE-TTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred CEEEEECC-CCCEEEEE-CCCCEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCEECCC
T ss_conf 20365469-99799998-19926787760898628872020676542124622001685065205871245566141255
Q ss_pred CCCCEEEEEECCCC----CEEEEEECCCEEEEEECCC
Q ss_conf 58664899993999----9999997899399993579
Q 006497 325 HDNTVWDLAWHPIG----YLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 325 h~~~V~~l~~s~d~----~~L~sgs~Dg~I~iWd~~~ 357 (643)
|.+.|+++++.+.. ..|++++.||.|++|+++.
T Consensus 324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred CCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCC
T ss_conf 5698899999489986567999991899399996986
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-33 Score=256.26 Aligned_cols=250 Identities=16% Similarity=0.302 Sum_probs=214.0
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCEEEEEEECCCCEEEEEECCCC
Q ss_conf 33898703798889999917999899995999499997799805-----7853488888579999459998999949991
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV-----KANKSAHKESVRDLSFCRTDLKFCSCSDDTT 179 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~-----~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~ 179 (643)
+.+..+ .|...|++++|++++++|++|+ ||.|+|||+..... ......|...|.+++|++++++|++++.|+.
T Consensus 43 ~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~ 120 (337)
T d1gxra_ 43 RQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAST 120 (337)
T ss_dssp EEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSE
T ss_pred EEEEEC-CCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
T ss_conf 499987-9999289999989999999997-99889977367763311687640488996899998679988988612332
Q ss_pred EEEEECCCC--EEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 999977998--245686026988489999599998999978990999988999316796368986799999499999999
Q 006497 180 VKVWDFARC--QEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 180 I~iwdl~~~--~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s 257 (643)
|++||+... +....+..|...+.+++|++++.++++++.|+.|++||+++++.......|...+.+++|++++.++++
T Consensus 121 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~ 200 (337)
T d1gxra_ 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111111111111111111111111111111111111111111111110123444321122
Q ss_pred EECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCC
Q ss_conf 97999299998799867779506888837999906999899999689959999779996508980335866489999399
Q 006497 258 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI 337 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 337 (643)
++.|+.|++||+++++.+..+. +...|.+++|++ ++.++++++.|+.+++|+++..... ....|...|++++|+++
T Consensus 201 ~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~ 276 (337)
T d1gxra_ 201 GGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYC 276 (337)
T ss_dssp EETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTT
T ss_pred CCCCCCCCCCCCCCCEEECCCC-CCCCEEEEEECC-CCCCCCEECCCCCCCCCCCCCCCCC--CCCCCCCCCCEEEECCC
T ss_conf 3566553211111100000246-666157999715-3030000002564211111111100--00124565416999899
Q ss_pred CCEEEEEECCCEEEEEECCCCCC
Q ss_conf 99999997899399993579999
Q 006497 338 GYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 338 ~~~L~sgs~Dg~I~iWd~~~~~~ 360 (643)
+++|++++.|+.|++|++.....
T Consensus 277 g~~l~s~s~Dg~i~iwd~~~~~~ 299 (337)
T d1gxra_ 277 GKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE
T ss_pred CCEEEEEECCCEEEEEECCCCCE
T ss_conf 99999994899699998999979
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.7e-34 Score=260.26 Aligned_cols=286 Identities=16% Similarity=0.266 Sum_probs=232.2
Q ss_pred EEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 7997506888776999993899989999789909999099983389870-379888999991799989999599949999
Q 006497 63 FVHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQ-AHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 63 ~~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~-~h~~~V~~i~~s~~~~~L~sg~~dg~I~iw 141 (643)
.+.+.+.||.+.|++++|++|+++|++|+.|+.|++||+++++....+. .|...|++++|+++++ +++++.|+.+++|
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~ 81 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV 81 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEEEE
T ss_conf 613684888878289999799999999908992999999999688998378877489988403311-2102310268873
Q ss_pred ECCCCCE---EEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 7799805---7853488888579999459998999949991999977998245686026988489999599998999978
Q 006497 142 QNNMNNV---KANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 142 d~~~~~~---~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~ 218 (643)
+...... ......+...+.+++|++++..+++++ ++.+.+|+... ..... ....+.+++|++++++|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~g~~ 156 (299)
T d1nr0a2 82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAVGGQ 156 (299)
T ss_dssp CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC--CCCCC--CCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1677620111000111134432100112211111222-22221111111--11101--1112332211111111111111
Q ss_pred CCCEEEEECCCCCEEE-EECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE---EEEECCCCCEEEEEEECCC
Q ss_conf 9909999889993167-96368986799999499999999979992999987998677---7950688883799990699
Q 006497 219 DSLVKLWDAKSGRELC-SFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFH 294 (643)
Q Consensus 219 dg~I~iwd~~s~~~~~-~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~~I~~i~~sp~~ 294 (643)
|+.|++||+++.+... ....|...|++++|++++++|++++.|+.|++||+.+...+ ..+..|...|++++|++ +
T Consensus 157 dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~ 235 (299)
T d1nr0a2 157 DSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP-D 235 (299)
T ss_dssp TSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT-T
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-C
T ss_conf 111111111111111111111111111111111111111111111111111111111111111111111111112466-6
Q ss_pred CCEEEEEECCCCEEEEECCCCCCEE-EEECCC-CCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 9899999689959999779996508-980335-8664899993999999999789939999357
Q 006497 295 EEYFVSGSLDGSIFHWLVGHETPQV-EIHNVH-DNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 295 ~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h-~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~ 356 (643)
+.+|++++.|+.|++||++...... .....| ...|.++.|. ++.+|++++.|+.|++||+.
T Consensus 236 ~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 236 NVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp SSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEE-ETTEEEEEETTSCEEEEECC
T ss_pred CCCEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCEEEEEEC-CCCEEEEEECCCEEEEEECC
T ss_conf 4513888289979999899997314898348988968999977-98999999289979999444
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.7e-33 Score=256.26 Aligned_cols=245 Identities=18% Similarity=0.311 Sum_probs=216.6
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE--EEEECCCCCCEEEEEECCCCCEEEEEEC--CCCEEEE
Q ss_conf 75068887769999938999899997899099990999833--8987037988899999179998999959--9949999
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNF--EMILQAHDHAIRSMVWSHNDNWMVSGDD--GGAIKYW 141 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~--~~~l~~h~~~V~~i~~s~~~~~L~sg~~--dg~I~iw 141 (643)
+.+.+|...|++++|++++++|++|+.||.|+|||+.+.+. ...+..|...|.+++|++++++|++++. +..+++|
T Consensus 52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~ 131 (311)
T d1nr0a1 52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 131 (311)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred EEECCCCCCEEEEEEECCCCEEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 79747888889999948999672255673674663101111000013433575433233311100011112211111111
Q ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 77998057853488888579999459998-99994999199997799824568602698848999959999899997899
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~-l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg 220 (643)
++++.+....+..|...|.+++|++++.+ |++++.|+.|++||+++.+....+..|...|+++.|+++++++++++.|+
T Consensus 132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~ 211 (311)
T d1nr0a1 132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211 (311)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 11111111111111111111111211101200011221111111111111111111111111123476422121111111
Q ss_pred CEEEEECCCCCEEEEEC-------CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC---CEEEEEE
Q ss_conf 09999889993167963-------6898679999949999999997999299998799867779506888---8379999
Q 006497 221 LVKLWDAKSGRELCSFH-------GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRK---DVTALAW 290 (643)
Q Consensus 221 ~I~iwd~~s~~~~~~~~-------~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---~I~~i~~ 290 (643)
.|++||+++++.+..+. +|...|++++|++++++|++++.|+.|+|||+++++++.++..+.. .+.++.|
T Consensus 212 ~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~ 291 (311)
T d1nr0a1 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 291 (311)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEE
T ss_conf 11000124464112221111111002465321024788999999937996999999999699999799986332999995
Q ss_pred ECCCCCEEEEEECCCCEEEEECC
Q ss_conf 06999899999689959999779
Q 006497 291 HPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 291 sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
+ +..|++++.||.|++||.+
T Consensus 292 ~---~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 292 T---KQALVSISANGFINFVNPE 311 (311)
T ss_dssp C---SSCEEEEETTCCEEEEETT
T ss_pred C---CCEEEEEECCCEEEEEECC
T ss_conf 1---9999999899979999588
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-32 Score=249.25 Aligned_cols=283 Identities=19% Similarity=0.354 Sum_probs=232.1
Q ss_pred EEEECCCCCCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 97506888776-99999389998999978990999909998338987037988899999179998999959994999977
Q 006497 65 HTSLNKNRCSI-NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 65 ~~~l~~h~~~I-~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~ 143 (643)
..+|++|.+.| +|++| ++++|++|+.|+.|+|||..+++.+.++.+|.+.|++++|+++ ++|++++.|+.|++|+.
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~ 81 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDI 81 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEET
T ss_pred CEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCC
T ss_conf 58889837886999998--8999999918990999989999399999789998899998699-99999964524432111
Q ss_pred CCCCEEEEECCCCCC--EEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEE-----------------------ECCC
Q ss_conf 998057853488888--579999459998999949991999977998245686-----------------------0269
Q 006497 144 NMNNVKANKSAHKES--VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL-----------------------TGHG 198 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~--I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~-----------------------~~~~ 198 (643)
...+........... +....+.+++..+++++.|+.|++||+.+....... ..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (355)
T d1nexb2 82 KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHM 161 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECC
T ss_conf 11111111100111111111111123220455438886899985677300124652000100000112340121011002
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 88489999599998999978990999988999316796368986799999499999999979992999987998677795
Q 006497 199 WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESF 278 (643)
Q Consensus 199 ~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~ 278 (643)
..+.+ +..++++++++..|+.|++||+++++.+.....+...+.++.+++++.++++++.|+.|++||++++..+..+
T Consensus 162 ~~v~~--~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 162 ASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL 239 (355)
T ss_dssp SCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCCCC--CCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCC
T ss_conf 22100--0025633442114420444301311000110001233211111121002101245636876301221111111
Q ss_pred ECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEE-EECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 068888379999069998999996899599997799965089803358664899-9939999999997899399993579
Q 006497 279 RGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL-AWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 279 ~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~s~d~~~L~sgs~Dg~I~iWd~~~ 357 (643)
..|...|.+++++ +++|++++.||.|++||+++...... .|...+.++ .+++++.+|+++ .|+.|++||++.
T Consensus 240 ~~h~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd~~t 312 (355)
T d1nexb2 240 QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFS---YHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRS 312 (355)
T ss_dssp CCCSSCCCEEEEC---SSEEEEECTTSEEEEEETTTCCEEEE---EECTTCCCCCEEEECSSEEEEE-ETTEEEEEETTT
T ss_pred CCCCCCCCCCCCC---CCEEEEEECCCCCCCCCCCCCCEECC---CCCCCCEEEEEECCCCCEEEEE-ECCEEEEEECCC
T ss_conf 1111111111232---10033320111111111111110001---2468822999984999899998-099799999999
Q ss_pred CC
Q ss_conf 99
Q 006497 358 PG 359 (643)
Q Consensus 358 ~~ 359 (643)
..
T Consensus 313 g~ 314 (355)
T d1nexb2 313 GK 314 (355)
T ss_dssp CC
T ss_pred CC
T ss_conf 97
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-32 Score=246.66 Aligned_cols=281 Identities=21% Similarity=0.363 Sum_probs=169.1
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 75068887769999938999899997899099990999833898703798889999917999899995999499997799
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~ 145 (643)
+.|++|.+.|.+ +++.++++|++|+.|+.|+|||+.+++.+.++.+|...|.+++|++ ++|++++.|+.+++|+...
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~--~~l~s~s~D~~~~~~~~~~ 86 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAET 86 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET--TEEEEEETTSCEEEEETTT
T ss_pred EEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECC--CCCCCCEECCCCCCCCCCC
T ss_conf 898886875099-9997899999991899099998999979999948899989999479--8632100000111111110
Q ss_pred CCEEEEECCCCCCEEEEEEE--------------------------------------CCCCEEEEEECCCCEEEEECCC
Q ss_conf 80578534888885799994--------------------------------------5999899994999199997799
Q 006497 146 NNVKANKSAHKESVRDLSFC--------------------------------------RTDLKFCSCSDDTTVKVWDFAR 187 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s--------------------------------------~d~~~l~s~s~dg~I~iwdl~~ 187 (643)
.........+...+...... .....+++++.|+.|++||...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~ 166 (342)
T d2ovrb2 87 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPET 166 (342)
T ss_dssp TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGG
T ss_pred CCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 00000012333047652024652212344403787403556300111001111000001333024335898699952523
Q ss_pred CEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 82456860269884899995999989999789909999889993167963689867999994999999999799929999
Q 006497 188 CQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLY 267 (643)
Q Consensus 188 ~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iw 267 (643)
...+..+..|...+..+.+ ++..+++++.|+.|++||++.++.+..+..|...+.++.++ +++|++++.|+.|++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iw 242 (342)
T d2ovrb2 167 ETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIW 242 (342)
T ss_dssp TEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEE
T ss_pred CEEEEEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC--CCEEEEECCCCEEEEE
T ss_conf 4366787275444210068--99999999589939995255653656741665320577068--9999997489889998
Q ss_pred ECCCCEEEEEEEC---CCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEE----CCCCCCEEEEEECCCCCE
Q ss_conf 8799867779506---888837999906999899999689959999779996508980----335866489999399999
Q 006497 268 DIRAMKELESFRG---HRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH----NVHDNTVWDLAWHPIGYL 340 (643)
Q Consensus 268 d~~~~~~~~~~~~---~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~s~d~~~ 340 (643)
|+...+....+.. |...+.++.++ ++++++++.||.|++||+++++.+..+. ..|...|++++|++++.+
T Consensus 243 d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~ 319 (342)
T d2ovrb2 243 DIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV 319 (342)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred ECCCCCCCCCCCCCCEEEECEEECCCC---CCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCE
T ss_conf 655442211122100011010000137---98449990899899999999979899862347898897899998799989
Q ss_pred EEEEECCCE----EEEEECC
Q ss_conf 999978993----9999357
Q 006497 341 LCSGSNDHT----TKFWCRN 356 (643)
Q Consensus 341 L~sgs~Dg~----I~iWd~~ 356 (643)
|++++.||+ |++||++
T Consensus 320 la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 320 CAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEECSSSSSCCEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEECC
T ss_conf 99996899970489999389
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-32 Score=250.19 Aligned_cols=272 Identities=19% Similarity=0.326 Sum_probs=225.7
Q ss_pred EEEEECCCCEEEEECCCCCE----EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC---------
Q ss_conf 99997899099990999833----89870379888999991799989999599949999779980578534---------
Q 006497 87 LITGSQSGEFTLWNGQSFNF----EMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS--------- 153 (643)
Q Consensus 87 L~tgs~dg~I~iwd~~~~~~----~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~--------- 153 (643)
.+....++.+.+|+....+. +.....|.+.|+|++|++++++|++|+ |+.|++||+.+++....+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred CCCCCCCCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEE-CCEEEEEEECCCCEEEEECCCCCCCCCC
T ss_conf 224688970898688777620541076079999689999999999999994-9948999813640576631665443244
Q ss_pred ---------CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf ---------88888579999459998999949991999977998245686026988489999599998999978990999
Q 006497 154 ---------AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 154 ---------~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~i 224 (643)
.+...|.+++|++++++|++++.|+.|++||....+.+..+.+|...|.++++++++..+++++.++.|++
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~ 189 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189 (388)
T ss_dssp ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 32111014677898899998899980121344411112111111111111111111111011111111112221015654
Q ss_pred EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE-------CCCCCEEEEEEECCCCCE
Q ss_conf 9889993167963689867999994999999999799929999879986777950-------688883799990699989
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-------GHRKDVTALAWHPFHEEY 297 (643)
Q Consensus 225 wd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-------~~~~~I~~i~~sp~~~~~ 297 (643)
||.++.........+...+....+..++++|++++.|+.|++||.+++..+..+. .|...|++++|++ ++.+
T Consensus 190 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~ 268 (388)
T d1erja_ 190 WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQS 268 (388)
T ss_dssp EETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT-TSSE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEECC-CCCE
T ss_conf 101111110000124544211236887875899738981999634557300010244333457789878999979-9999
Q ss_pred EEEEECCCCEEEEECCCCCC-----------EEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 99996899599997799965-----------0898033586648999939999999997899399993579999
Q 006497 298 FVSGSLDGSIFHWLVGHETP-----------QVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 298 l~sgs~dg~I~iwd~~~~~~-----------~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~ 360 (643)
|++++.|+.|++||+..... .......|...|++++|++++.+|++++.||.|++||+.....
T Consensus 269 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~ 342 (388)
T d1erja_ 269 VVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 342 (388)
T ss_dssp EEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEECCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 99997899289875157764321013444200110124553278999889999999996989799999999969
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-31 Score=243.07 Aligned_cols=261 Identities=27% Similarity=0.481 Sum_probs=233.6
Q ss_pred EEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC
Q ss_conf 99099983389870379888999991799989999599949999779980578534888885799994599989999499
Q 006497 98 LWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD 177 (643)
Q Consensus 98 iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d 177 (643)
.|.-. ......+++|.+.|++++|++++++|++++.|++|++||+++++.+..+..|...|.+++|++++..++++..+
T Consensus 2 ~w~p~-~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~ 80 (317)
T d1vyhc1 2 EWIPR-PPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80 (317)
T ss_dssp CCCCC-SSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCC-CCCCEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCC
T ss_conf 36898-98448985888876899993898999999389929999899997999995788867777630111101111111
Q ss_pred CCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 91999977998245686026988489999599998999978990999988999316796368986799999499999999
Q 006497 178 TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 178 g~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s 257 (643)
+.+.+|+....+....+..+...+.++.++++++.+++++.|+.+++||+++++.+..+..|...+.+++|++++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (317)
T d1vyhc1 81 MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 160 (317)
T ss_dssp SCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCCCEEEECCCCCCEEEE
T ss_conf 11011100111111110000000000001699855776526752357511443034687167776300001667999999
Q ss_pred EECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECC-------------------CCCEEEEEECCCCEEEEECCCCCCE
Q ss_conf 979992999987998677795068888379999069-------------------9989999968995999977999650
Q 006497 258 ASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPF-------------------HEEYFVSGSLDGSIFHWLVGHETPQ 318 (643)
Q Consensus 258 ~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~-------------------~~~~l~sgs~dg~I~iwd~~~~~~~ 318 (643)
++.|+.|++|++++.+.+..+..+...+.++.|++. .+.++++++.|+.|++|++++....
T Consensus 161 ~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~ 240 (317)
T d1vyhc1 161 CSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL 240 (317)
T ss_dssp EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE
T ss_pred EECCCEEEEEEECCCEEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCEE
T ss_conf 92798299975125403478824778733799863256411103456303430258861475169978999888999688
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 898033586648999939999999997899399993579999
Q 006497 319 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 319 ~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~ 360 (643)
.. ...|...|++++|++++.+|++++.||.|++||+.....
T Consensus 241 ~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 281 (317)
T d1vyhc1 241 MT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 281 (317)
T ss_dssp EE-EECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC
T ss_pred EE-EECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE
T ss_conf 99-968899879999879999999997989499999999919
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8.9e-31 Score=237.65 Aligned_cols=282 Identities=15% Similarity=0.207 Sum_probs=223.6
Q ss_pred CCCEEEEEECCCCCEEEEEECCCC-EEEEECCCC--CEEEEECCC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCC
Q ss_conf 877699999389998999978990-999909998--338987037-98889999917--999899995999499997799
Q 006497 72 RCSINRVLWTPTGRRLITGSQSGE-FTLWNGQSF--NFEMILQAH-DHAIRSMVWSH--NDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~dg~-I~iwd~~~~--~~~~~l~~h-~~~V~~i~~s~--~~~~L~sg~~dg~I~iwd~~~ 145 (643)
+..+++++|+++++.|++++.+.. |+.|+.... .....+.+| ...|++++|+| ++.+|++++.||+|++||+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECC
T ss_conf 99847999989979999996998799997688887650289907899988999981179997999994899779854058
Q ss_pred CCE--------EEEECCCCCCEEEEEEECCCCEEEEEEC--CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCE-EE
Q ss_conf 805--------7853488888579999459998999949--991999977998245686026988489999599998-99
Q 006497 146 NNV--------KANKSAHKESVRDLSFCRTDLKFCSCSD--DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSL-LV 214 (643)
Q Consensus 146 ~~~--------~~~~~~~~~~I~~l~~s~d~~~l~s~s~--dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~-l~ 214 (643)
.+. ...+..+...|.+++|+++++++++++. ++.+.+|+.++++.+..+.+|...|++++|++++.. ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred CCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 86215651002541136567377999899988220100124404788850233110012001234321111234320688
Q ss_pred EEECCCCEEEEECCCCCEEEEE---CCCCCCEEEEEECCC-CCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 9978990999988999316796---368986799999499-999999979992999987998677795068888379999
Q 006497 215 SGGKDSLVKLWDAKSGRELCSF---HGHKNMVLCVKWNQN-GNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAW 290 (643)
Q Consensus 215 sg~~dg~I~iwd~~s~~~~~~~---~~~~~~i~~i~~sp~-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~ 290 (643)
+++.|+.|++||.+..+....+ ..+...|.+++|+++ +.+|++++.|+.|++||+++++.+..+..|...+..+.|
T Consensus 177 ~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 256 (325)
T d1pgua1 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF 256 (325)
T ss_dssp EEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEE
T ss_pred EEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEE
T ss_conf 86211122111122110000000015777752776303453100001123321013430012221111111111111000
Q ss_pred E---CCCCCEEEEEECCCCEEEEECCCCCCEEEEEC-CCCCCEE--EEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 0---69998999996899599997799965089803-3586648--9999399999999978993999935
Q 006497 291 H---PFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-VHDNTVW--DLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 291 s---p~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~--~l~~s~d~~~L~sgs~Dg~I~iWd~ 355 (643)
+ + ++.+|++++.|+.|++||++..+.+..+.. .+...+. ++.|.. +.+|++++.||.|++||+
T Consensus 257 s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 257 ALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG-NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEE-TTEEEEEETTSCEEEEET
T ss_pred EEECC-CCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECC-CCEEEEEECCCEEEEEEC
T ss_conf 00036-8999999958993999999999788999954874067699999889-999999979999999979
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-29 Score=225.98 Aligned_cols=274 Identities=22% Similarity=0.472 Sum_probs=231.3
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCC
Q ss_conf 75068887769999938999899997899099990999833898703798889999917999899995999499997799
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNM 145 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~ 145 (643)
.....|...|+|++| |+++|++|+.||.|+|||+.+++.+.++.+|.+.|++++| ++++|++++.|+.|++|++..
T Consensus 9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~ 84 (293)
T d1p22a2 9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNT 84 (293)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSS
T ss_pred ECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCCCCC
T ss_conf 432899998899987--6999999928993999999999199999267787763423--630021001110110000024
Q ss_pred CCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 805785348888857999945999899994999199997799824---56860269884899995999989999789909
Q 006497 146 NNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 146 ~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~---~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I 222 (643)
+.............. .+......++++..++.+.+|+...... ...+..+...+.++.+. ...+++++.|+.|
T Consensus 85 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i 160 (293)
T d1p22a2 85 GEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 160 (293)
T ss_dssp CCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC--CCCCCCCCCCCCE
T ss_conf 641001111110000--111111000001356630686134454442121000113543110000--0220110699860
Q ss_pred EEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 99988999316796368986799999499999999979992999987998677795068888379999069998999996
Q 006497 223 KLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 223 ~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs 302 (643)
++||+++.+.+..+..+...+..+.++ +.++++++.|+.|++||+++.+.+..+..+...+..+.+ +..+|++++
T Consensus 161 ~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~---~~~~l~sg~ 235 (293)
T d1p22a2 161 KVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA 235 (293)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC---CSSEEEEEE
T ss_pred EEECCCCCCEEEEECCCCCCCCCCCCC--CCEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEECCC---CCEEEEEEC
T ss_conf 410078883889971554453221689--875887658998999866556146652143100000145---410799986
Q ss_pred CCCCEEEEECCC--------CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 899599997799--------9650898033586648999939999999997899399993
Q 006497 303 LDGSIFHWLVGH--------ETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 303 ~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd 354 (643)
.||.|++||+.. ..........|.+.|++++|+ +.+|++++.||+|++||
T Consensus 236 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp TTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC--CCEEEEEECCCEEEEEC
T ss_conf 79979999888886444567754557845889988999971--99999992299899959
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.3e-30 Score=236.42 Aligned_cols=245 Identities=10% Similarity=0.167 Sum_probs=205.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE
Q ss_conf 79888999991799989999599949999779980--5785348888857999945999899994999199997799824
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 190 (643)
Q Consensus 113 h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~--~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~ 190 (643)
..++|+|++|++++++|++++.|+.|++|+.++++ ....+.+|...|.+++|++++++|++++.|++|++||+.+...
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~ 85 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC
T ss_conf 99883899998999999999488989999888997899999558899888999979999999997999399986203321
Q ss_pred E--EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE----EEECCCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 5--686026988489999599998999978990999988999316----7963689867999994999999999799929
Q 006497 191 E--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL----CSFHGHKNMVLCVKWNQNGNWVLTASKDQII 264 (643)
Q Consensus 191 ~--~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~----~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I 264 (643)
. ..+..|...|.+++|+++++.|++++.|+.|++|+++..... .....|...|.+++|++++.+|++++.|+.|
T Consensus 86 ~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v 165 (371)
T d1k8kc_ 86 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 165 (371)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEE
T ss_conf 10012232211000111111121100000257630254420334331110010111222111111111110001347679
Q ss_pred EEEECCCC------------------EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCC
Q ss_conf 99987998------------------677795068888379999069998999996899599997799965089803358
Q 006497 265 KLYDIRAM------------------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 326 (643)
Q Consensus 265 ~iwd~~~~------------------~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 326 (643)
++||.... ..+.....|...|.+++|++ ++++|++++.|+.|++||+........ ...|.
T Consensus 166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~ 243 (371)
T d1k8kc_ 166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA-NGSRVAWVSHDSTVCLADADKKMAVAT-LASET 243 (371)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS-SSSEEEEEETTTEEEEEEGGGTTEEEE-EECSS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEC-CCCCCCCCCCCCCCEEEEEECCCCEEE-EECCC
T ss_conf 9984015764310012211111111011244047667478987512-332100001478605886410121000-00146
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
Q ss_conf 6648999939999999997899399993579999
Q 006497 327 NTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 327 ~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~ 360 (643)
..|++++|++++.+|++ +.|+.+++|..+....
T Consensus 244 ~~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~ 276 (371)
T d1k8kc_ 244 LPLLAVTFITESSLVAA-GHDCFPVLFTYDSAAG 276 (371)
T ss_dssp CCEEEEEEEETTEEEEE-ETTSSCEEEEEETTTT
T ss_pred CCCEEEEECCCCCEEEE-ECCCCEEEEEEECCCC
T ss_conf 65203654699979999-8199267877608986
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.6e-28 Score=221.11 Aligned_cols=254 Identities=19% Similarity=0.352 Sum_probs=221.3
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 83389870379888999991799989999599949999779980578534888885799994599989999499919999
Q 006497 104 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183 (643)
Q Consensus 104 ~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iw 183 (643)
.+..+++++|.+.|++++|++++++|++|+.||.|++||+.+++....+..|...|.+++|++++.++++++.|+.+.+|
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~ 124 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY 124 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred EEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCEEEEEECCCCEEECC
T ss_conf 06527988878988899998999999999789955563102102579972465337756760121144310133201013
Q ss_pred ECCCCE----EEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 779982----4568602698848999959999899997899099998899931679636898679999949999999997
Q 006497 184 DFARCQ----EERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 184 dl~~~~----~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s 259 (643)
+..... ....+..|.......... ....++....|.....++............+...+....+.+...++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (340)
T d1tbga_ 125 NLKTREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA 203 (340)
T ss_dssp ESSSSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCCCCCCCCCCEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 3222212221110013542110111111-111111112445432001232211111233101576300124421268760
Q ss_pred CCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE-ECCCCCCEEEEEECCCC
Q ss_conf 99929999879986777950688883799990699989999968995999977999650898-03358664899993999
Q 006497 260 KDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI-HNVHDNTVWDLAWHPIG 338 (643)
Q Consensus 260 ~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~d~ 338 (643)
.|+.|++||+++++.+..+..|...|++++|++ ++.+|++++.|+.|++|+++........ ...+...|++++|++++
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 282 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSG 282 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSS
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 573699999999948899957889858999979-9899999969996999752122111111122445745899998999
Q ss_pred CEEEEEECCCEEEEEECCCCC
Q ss_conf 999999789939999357999
Q 006497 339 YLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 339 ~~L~sgs~Dg~I~iWd~~~~~ 359 (643)
.+|++++.||.|++||+....
T Consensus 283 ~~l~~g~~dg~i~iwd~~~~~ 303 (340)
T d1tbga_ 283 RLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp CEEEEEETTSCEEEEETTTCC
T ss_pred CEEEEEECCCEEEEEECCCCC
T ss_conf 999999797989999999993
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-29 Score=226.21 Aligned_cols=270 Identities=17% Similarity=0.223 Sum_probs=221.6
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 99750688877699999389998999978990999909998338987037988899999179998999959994999977
Q 006497 64 VHTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQN 143 (643)
Q Consensus 64 ~~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~ 143 (643)
..+++.+|...|++++|++ |++|+.||.|++||..+. ...|...|.++.++++ ..+++++.|+++++|+.
T Consensus 5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGI 74 (287)
T ss_dssp EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETTE
T ss_pred EEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCC-CEEEEEEECCCCCCCCC
T ss_conf 3499988798649999895----789848991999989998-----8887787899996599-72898861012221111
Q ss_pred CCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC-CE
Q ss_conf 99805785348888857999945999899994999199997799824568602698848999959999899997899-09
Q 006497 144 NMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS-LV 222 (643)
Q Consensus 144 ~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg-~I 222 (643)
...+ ....+.++.+.+++..+++ +.++.+.+|+..+.+.+..+.. ...+.+ ++++++.+++++.++ .|
T Consensus 75 ~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~~~~v 143 (287)
T d1pgua2 75 TKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRL-NSPGSA--VSLSQNYVAVGLEEGNTI 143 (287)
T ss_dssp EEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEEC-SSCEEE--EEECSSEEEEEETTTSCE
T ss_pred CCCC-------CCCCEEEEEECCCCCEEEE-EECCCCEEEECCCEEEEEECCC-CCEEEE--EECCCCCEEEECCCCCEE
T ss_conf 1111-------1221014664167856999-6033210000110035431012-220356--521475111000221000
Q ss_pred EEEECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEE-EEECCCCCEEEEEEECC-------
Q ss_conf 999889993167963-689867999994999999999799929999879986777-95068888379999069-------
Q 006497 223 KLWDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPF------- 293 (643)
Q Consensus 223 ~iwd~~s~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~I~~i~~sp~------- 293 (643)
++|++...+....+. .+...+++++|++++.+|++++.|+.|++||+.+.+.+. .+..|...|.+++|++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 223 (287)
T d1pgua2 144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE 223 (287)
T ss_dssp EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred EEEECCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC
T ss_conf 21000122100012102478536999516765211011111100000023321100011111111000001365410012
Q ss_pred --CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf --99899999689959999779996508980335866489999399999999978993999935
Q 006497 294 --HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 294 --~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~ 355 (643)
++.++++++.|+.|++|+++..........+|...|++++|++++ .|++++.|+.|++|++
T Consensus 224 ~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 67887027664999599988899975899927878985899998999-8999979992999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-28 Score=221.66 Aligned_cols=247 Identities=16% Similarity=0.229 Sum_probs=203.3
Q ss_pred EEECCC-CCCEEEEEECC--CCCEEEEEECCCCEEEEECCCCCE--------EEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 750688-87769999938--999899997899099990999833--------8987037988899999179998999959
Q 006497 66 TSLNKN-RCSINRVLWTP--TGRRLITGSQSGEFTLWNGQSFNF--------EMILQAHDHAIRSMVWSHNDNWMVSGDD 134 (643)
Q Consensus 66 ~~l~~h-~~~I~~i~~sp--dg~~L~tgs~dg~I~iwd~~~~~~--------~~~l~~h~~~V~~i~~s~~~~~L~sg~~ 134 (643)
..+.+| ...|++++|+| ++.+|++++.||+|+|||....+. ...+..|.+.|.+++|++++++|++++.
T Consensus 56 ~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 135 (325)
T d1pgua1 56 VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135 (325)
T ss_dssp EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred EEEECCCCCCEEEEEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCEEEC
T ss_conf 89907899988999981179997999994899779854058862156510025411365673779998999882201001
Q ss_pred --CCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCEEEEEEE---CCCCCEEEEEECC
Q ss_conf --994999977998057853488888579999459998-9999499919999779982456860---2698848999959
Q 006497 135 --GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLT---GHGWDVKSVDWHP 208 (643)
Q Consensus 135 --dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~-l~s~s~dg~I~iwdl~~~~~~~~~~---~~~~~V~~i~~sp 208 (643)
++.+.+|+.++++....+..|...|.+++|++++.. +++++.|+.|++||+...+....+. .+...|.+++|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~p 215 (325)
T d1pgua1 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 215 (325)
T ss_dssp CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS
T ss_pred CCCCEEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECC
T ss_conf 24404788850233110012001234321111234320688862111221111221100000000157777527763034
Q ss_pred C-CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEC---CCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCC
Q ss_conf 9-9989999789909999889993167963689867999994---99999999979992999987998677795068888
Q 006497 209 T-KSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWN---QNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKD 284 (643)
Q Consensus 209 ~-~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~s---p~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 284 (643)
+ +.+|++++.|+.|++||+++++.+..+..|...+.++.|+ +++++|++++.|+.|+|||+++++.+..+..+...
T Consensus 216 d~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~ 295 (325)
T d1pgua1 216 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 295 (325)
T ss_dssp TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred CCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCC
T ss_conf 53100001123321013430012221111111111111000000368999999958993999999999788999954874
Q ss_pred --EEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf --3799990699989999968995999977
Q 006497 285 --VTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 285 --I~~i~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
+..+++....+.+|++++.||.|++||+
T Consensus 296 ~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 296 LGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 067699999889999999979999999979
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5e-28 Score=217.43 Aligned_cols=276 Identities=17% Similarity=0.225 Sum_probs=205.8
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC------EEEEECCCCCCEEEEEECC-------CCCEEEE
Q ss_conf 97506888776999993899989999789909999099983------3898703798889999917-------9998999
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN------FEMILQAHDHAIRSMVWSH-------NDNWMVS 131 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~------~~~~l~~h~~~V~~i~~s~-------~~~~L~s 131 (643)
....++|.+.|+++++++ ++|++++.|+.|+|||..+.+ .......+...+..+.... +..++++
T Consensus 7 ~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 84 (393)
T d1sq9a_ 7 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84 (393)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred EECCCCCCCCCEEEEEEC--CEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEE
T ss_conf 520876367127999969--999999799969987898788776540467654204771676667500157998768999
Q ss_pred EECCCCEEEEECCCCCEEE-----EE-----CCCCCCEEEEEEECCC-----CEEEEEECCCCEEEEECCCCEE------
Q ss_conf 9599949999779980578-----53-----4888885799994599-----9899994999199997799824------
Q 006497 132 GDDGGAIKYWQNNMNNVKA-----NK-----SAHKESVRDLSFCRTD-----LKFCSCSDDTTVKVWDFARCQE------ 190 (643)
Q Consensus 132 g~~dg~I~iwd~~~~~~~~-----~~-----~~~~~~I~~l~~s~d~-----~~l~s~s~dg~I~iwdl~~~~~------ 190 (643)
++.||.|++|++....... .. ..+...+..++|..+. .++++++.|+.+++|++.....
T Consensus 85 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~ 164 (393)
T d1sq9a_ 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164 (393)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEE
T ss_conf 94899199998228982056512456324311578966899984478865421799983898199987404775341023
Q ss_pred ------------EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE------CCCCCCEEEEEECCCC
Q ss_conf ------------5686026988489999599998999978990999988999316796------3689867999994999
Q 006497 191 ------------ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNG 252 (643)
Q Consensus 191 ------------~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~------~~~~~~i~~i~~sp~g 252 (643)
......+...+.+++|++++ +|++++.|+.|++||+++++.+..+ .+|...|++++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 243 (393)
T d1sq9a_ 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243 (393)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSST
T ss_pred EEECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
T ss_conf 31032000145100025789867899978999-89999389829998602332110000111112425638770046653
Q ss_pred CEEEEEECCC---CEEEEECCCCEEEEEEE-------------CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 9999997999---29999879986777950-------------6888837999906999899999689959999779996
Q 006497 253 NWVLTASKDQ---IIKLYDIRAMKELESFR-------------GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 253 ~~l~s~s~dg---~I~iwd~~~~~~~~~~~-------------~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
++|++++.|+ .|++||+++++.+..+. +|...|++++|++ ++++|++++.|++|++||++++.
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~ 322 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKE 322 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTE
T ss_pred CEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCC-CCCEEEEECCCCEEEEEECCCCC
T ss_conf 20112428988421001035321344431156666431023202358666001389-88806987799989999999997
Q ss_pred CEEEEECCCCCCEE----EEEECCCCCEEEEEE
Q ss_conf 50898033586648----999939999999997
Q 006497 317 PQVEIHNVHDNTVW----DLAWHPIGYLLCSGS 345 (643)
Q Consensus 317 ~~~~~~~~h~~~V~----~l~~s~d~~~L~sgs 345 (643)
.+ ..+.+|.+.|. .++|++++..+++++
T Consensus 323 ~~-~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 323 RI-TTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EE-EEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred EE-EEECCCCCCCCCCCCEEEECCCCCEEEECC
T ss_conf 99-999886876137734899999999999831
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=5.9e-28 Score=216.87 Aligned_cols=252 Identities=15% Similarity=0.215 Sum_probs=206.8
Q ss_pred CCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-CCCCCCEEEEEEECCCCEEEEEECCCCEEE
Q ss_conf 8338987037988899999179998999959994999977998057853-488888579999459998999949991999
Q 006497 104 FNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKV 182 (643)
Q Consensus 104 ~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~I~i 182 (643)
++..+++.+|.+.|++++|++++++|++++.|+.|++||+++++....+ ..|...|.+++|++++. +++++.|+.+++
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEE
T ss_pred CCCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCE-EECCCCEEEEEE
T ss_conf 8613684888878289999799999999908992999999999688998378877489988403311-210231026887
Q ss_pred EECCCCEE---EEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 97799824---568602698848999959999899997899099998899931679636898679999949999999997
Q 006497 183 WDFARCQE---ERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 183 wdl~~~~~---~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s 259 (643)
|++..... ......+...+.+++|+++++++++++ ++.+++|+.. +..... ....+.+++|++++++|++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~--~~~~~~~~~~s~~~~~l~~g~ 155 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP--ISYNSSCVALSNDKQFVAVGG 155 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCC
T ss_conf 31677620111000111134432100112211111222-2222111111--111101--111233221111111111111
Q ss_pred CCCCEEEEECCCCEEEE-EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE--EEECCCCCCEEEEEECC
Q ss_conf 99929999879986777-9506888837999906999899999689959999779996508--98033586648999939
Q 006497 260 KDQIIKLYDIRAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV--EIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 260 ~dg~I~iwd~~~~~~~~-~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~s~ 336 (643)
.|+.|++||+++.+... ....|...|++++|++ ++.+|++++.|+.|++|++.+..... .....|...|++++|++
T Consensus 156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 234 (299)
T d1nr0a2 156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSP 234 (299)
T ss_dssp TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1111111111111111111111111111111111-111111111111111111111111111111111111111112466
Q ss_pred CCCEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 99999999789939999357999953
Q 006497 337 IGYLLCSGSNDHTTKFWCRNRPGDTA 362 (643)
Q Consensus 337 d~~~L~sgs~Dg~I~iWd~~~~~~~~ 362 (643)
++.+|++++.|+.|++|+++......
T Consensus 235 ~~~~l~sgs~dg~i~iwd~~~~~~~~ 260 (299)
T d1nr0a2 235 DNVRLATGSLDNSVIVWNMNKPSDHP 260 (299)
T ss_dssp TSSEEEEEETTSCEEEEETTCTTSCC
T ss_pred CCCCEEEECCCCEEEEEECCCCCCCE
T ss_conf 64513888289979999899997314
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.8e-27 Score=210.18 Aligned_cols=251 Identities=23% Similarity=0.394 Sum_probs=201.7
Q ss_pred EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCC
Q ss_conf 90999833898703798889999917999899995999499997799805785348888857999945999899994999
Q 006497 99 WNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT 178 (643)
Q Consensus 99 wd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg 178 (643)
|+..+.+...++++|.+.|.+ +++.++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+++ +|++++.|+
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~ 77 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDR 77 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred CCCCCCCCCEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEECCC--CCCCCEECC
T ss_conf 989988758898886875099-99978999999918990999989999799999488999899994798--632100000
Q ss_pred CEEEEECCCCEEEEEEECCCCCEEE--------------------------------------EEECCCCCEEEEEECCC
Q ss_conf 1999977998245686026988489--------------------------------------99959999899997899
Q 006497 179 TVKVWDFARCQEERSLTGHGWDVKS--------------------------------------VDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 179 ~I~iwdl~~~~~~~~~~~~~~~V~~--------------------------------------i~~sp~~~~l~sg~~dg 220 (643)
.+++|+................+.. ..+......+++++.|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 157 (342)
T d2ovrb2 78 TLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF 157 (342)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred CCCCCCCCCCCCEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCEEECCCCCEEEEECCCC
T ss_conf 11111111000000012333047652024652212344403787403556300111001111000001333024335898
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEE
Q ss_conf 09999889993167963689867999994999999999799929999879986777950688883799990699989999
Q 006497 221 LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVS 300 (643)
Q Consensus 221 ~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~s 300 (643)
.|++||.+..+.+..+..|...+.++.+ ++.+|++++.|+.|++||++..+.+..+..|...+.++.++ +++|++
T Consensus 158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s 232 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVS 232 (342)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE---TTEEEE
T ss_pred EEEEEECCCCEEEEEECCCCCCCCCCCC--CCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEECC---CCEEEE
T ss_conf 6999525234366787275444210068--99999999589939995255653656741665320577068---999999
Q ss_pred EECCCCEEEEECCCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 96899599997799965089803--358664899993999999999789939999357999
Q 006497 301 GSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 301 gs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~ 359 (643)
++.|+.|++|++........+.. .|...+.++.++ ++++++++.||.|++||++...
T Consensus 233 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 233 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred ECCCCEEEEEECCCCCCCCCCCCCCEEEECEEECCCC--CCEEEEECCCCEEEEEECCCCC
T ss_conf 7489889998655442211122100011010000137--9844999089989999999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-28 Score=218.37 Aligned_cols=289 Identities=13% Similarity=0.042 Sum_probs=218.2
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCEEEEEECCCC-CEEEEEECCCCEEE
Q ss_conf 9750688877699999389998999978990999909998338---9870379888999991799-98999959994999
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE---MILQAHDHAIRSMVWSHND-NWMVSGDDGGAIKY 140 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~---~~l~~h~~~V~~i~~s~~~-~~L~sg~~dg~I~i 140 (643)
...+++|++.|++|+|++++++|++++.|++|+|||+++.... .....|...|++++|++++ .+|++++.|+.|++
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~ 83 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILK 83 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEE
T ss_pred EECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCEEE
T ss_conf 97688998978889995899999999799929999756998636898855899988999995899978998126531145
Q ss_pred EECCCCCEEEEECCCCCC-EEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEE----ECC--CCCEEEEEECCCCCEE
Q ss_conf 977998057853488888-579999459998999949991999977998245686----026--9884899995999989
Q 006497 141 WQNNMNNVKANKSAHKES-VRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSL----TGH--GWDVKSVDWHPTKSLL 213 (643)
Q Consensus 141 wd~~~~~~~~~~~~~~~~-I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~----~~~--~~~V~~i~~sp~~~~l 213 (643)
|+............+... .....+..+...+++++.++.+++||++........ ..+ ......+.+..++..+
T Consensus 84 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (342)
T d1yfqa_ 84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL 163 (342)
T ss_dssp ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCCCE
T ss_conf 42044320000011111111111111111111110122211102023444330230002430012000001000168702
Q ss_pred EEEECCCCEEEEECCCCCEEE---EECCCCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCEEE---------E----
Q ss_conf 999789909999889993167---9636898679999949-9999999979992999987998677---------7----
Q 006497 214 VSGGKDSLVKLWDAKSGRELC---SFHGHKNMVLCVKWNQ-NGNWVLTASKDQIIKLYDIRAMKEL---------E---- 276 (643)
Q Consensus 214 ~sg~~dg~I~iwd~~s~~~~~---~~~~~~~~i~~i~~sp-~g~~l~s~s~dg~I~iwd~~~~~~~---------~---- 276 (643)
++++.|+.|++||++..+... ........+.+..+.+ ++..+++++.|+.+.+|+....... .
T Consensus 164 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred EEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEE
T ss_conf 46517984788760567634111210254221014676369998788654899599998059864011123512565553
Q ss_pred --EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf --950688883799990699989999968995999977999650898033586648999939999999997899399993
Q 006497 277 --SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWC 354 (643)
Q Consensus 277 --~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd 354 (643)
....|...+++++|+| ++.+|++++.||.|++||+++.+.+..+...+ .+..++|++++++|++++.|+.+++|.
T Consensus 244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~--~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN--EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCS--SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred CCCCCCCCCCCEEEEECC-CCCEEEEECCCCEEEEEECCCCCEEEEECCCC--CCEEEEEEECCCEEEEEECCCCEEEEE
T ss_conf 147776235431599669-84479998799989999999894988705899--987999994799999999199278830
Q ss_pred CC
Q ss_conf 57
Q 006497 355 RN 356 (643)
Q Consensus 355 ~~ 356 (643)
..
T Consensus 321 ~~ 322 (342)
T d1yfqa_ 321 AI 322 (342)
T ss_dssp SS
T ss_pred EE
T ss_conf 12
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.2e-26 Score=202.51 Aligned_cols=283 Identities=17% Similarity=0.284 Sum_probs=230.1
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCC--EEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9750688877699999389998999978990999909998338987037988--89999917999899995999499997
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA--IRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~--V~~i~~s~~~~~L~sg~~dg~I~iwd 142 (643)
..++.+|++.|++++|+++ .+|++++.|+.|++|+....+........... +....+.+++.++++++.|+.|++|+
T Consensus 46 ~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~ 124 (355)
T d1nexb2 46 LLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124 (355)
T ss_dssp EEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEE
T ss_pred EEEEECCCCCEEEEEECCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEE
T ss_conf 9999789998899998699-999999645244321111111111110011111111111112322045543888689998
Q ss_pred CCCCCEEEEE-----------------------CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCC
Q ss_conf 7998057853-----------------------48888857999945999899994999199997799824568602698
Q 006497 143 NNMNNVKANK-----------------------SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGW 199 (643)
Q Consensus 143 ~~~~~~~~~~-----------------------~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~ 199 (643)
+......... ..|...+. .+..+++.++++..|+.|++||+.+.+.+.....+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~ 202 (355)
T d1nexb2 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 202 (355)
T ss_dssp CCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCCEECCCCCCCEECCCEECCCCCCCEEEEEEECCCCCC--CCCCCCCEEEEECCCCEEEEEECCCCCCEEEEECCCC
T ss_conf 56773001246520001000001123401210110022210--0002563344211442044430131100011000123
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf 84899995999989999789909999889993167963689867999994999999999799929999879986777950
Q 006497 200 DVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 200 ~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
.+.++.+++++..+++++.|+.|++||++++..+..+.+|...|.++.++ +++|++++.|+.|++||+++......
T Consensus 203 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~-- 278 (355)
T d1nexb2 203 RIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS-- 278 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE--
T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCC--CCEEEEEECCCCCCCCCCCCCCEECC--
T ss_conf 32111111210021012456368763012211111111111111111232--10033320111111111111110001--
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 68888379999069998999996899599997799965089803358664899993999999999789939999357
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 280 ~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~ 356 (643)
.|...+.++.+.+.++.++++++ |+.|++||+++++.+......|...|++++|+++ .++++++.||.+++|.++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 279 YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp EECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEEECCCCCCEEEEEECCC-EEEEEEECCCCEEEEEEE
T ss_conf 24688229999849998999980-9979999999997988884589998999998399-199999898909999995
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=5.4e-27 Score=209.78 Aligned_cols=277 Identities=9% Similarity=0.023 Sum_probs=185.1
Q ss_pred EEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEEC
Q ss_conf 999938-999899997899099990999833898703798889999917999899995999--49999779980578534
Q 006497 77 RVLWTP-TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG--AIKYWQNNMNNVKANKS 153 (643)
Q Consensus 77 ~i~~sp-dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg--~I~iwd~~~~~~~~~~~ 153 (643)
.-.||| ||+++++++ +|.|++||.+++..... .|...|.+++|++|+++|++++.+. .|++||.++++... +.
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~ 82 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FE 82 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CC
T ss_pred CCCCCCCCCCEEEEEE-CCEEEEEECCCCCEEEC--CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCEEE-EE
T ss_conf 0514688999999998-99699998999948991--69998888999899999999992899899999899994887-50
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE----------CCCCEE
Q ss_conf 8888857999945999899994999199997799824568602698848999959999899997----------899099
Q 006497 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG----------KDSLVK 223 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~----------~dg~I~ 223 (643)
.|...|.+++|++++++|++++.++.+++|++...+....+..+...+.+++|++++++|+.+. .++.++
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEE
T ss_conf 89712774121145432100011111000001222100000013552023012132256652123312110002565426
Q ss_pred EEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE-------EEEEECC---------------
Q ss_conf 998899931679636898679999949999999997999299998799867-------7795068---------------
Q 006497 224 LWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE-------LESFRGH--------------- 281 (643)
Q Consensus 224 iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~-------~~~~~~~--------------- 281 (643)
+||+.+++.. .+..+...+.++.|++++++|++++.++.+.+||...... ...+..+
T Consensus 163 v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 241 (360)
T d1k32a3 163 VYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMT 241 (360)
T ss_dssp EEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGS
T ss_pred EECCCCCCEE-EECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCC
T ss_conf 6304557135-303543221100125779999999599855753335440232036411798524696012068777671
Q ss_pred ---------------------CCCEEEEEEEC----------C--CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCC
Q ss_conf ---------------------88837999906----------9--99899999689959999779996508980335866
Q 006497 282 ---------------------RKDVTALAWHP----------F--HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNT 328 (643)
Q Consensus 282 ---------------------~~~I~~i~~sp----------~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 328 (643)
......+...+ . ...++++++.++.|++||+...+. . .+.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~----~~~~~ 316 (360)
T d1k32a3 242 SEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV-T----EVKNN 316 (360)
T ss_dssp CCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCE-E----EEEEE
T ss_pred CCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCCEE-E----EECCC
T ss_conf 553113652665400101247675267541389856999973599706999648998799997999749-8----86488
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf 48999939999999997899399993579999532
Q 006497 329 VWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTAR 363 (643)
Q Consensus 329 V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~~~~ 363 (643)
|.+++|++|+++|++++.||.|++|++++.+....
T Consensus 317 v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~ 351 (360)
T d1k32a3 317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351 (360)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEE
T ss_pred CCEEEECCCCCEEEEEECCCEEEEEECCCCCCCEE
T ss_conf 68799999898999997899499999999985459
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=2.6e-25 Score=197.41 Aligned_cols=247 Identities=16% Similarity=0.255 Sum_probs=149.5
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE------EEEECCCCCCEEEEEEE---C----CCCEEEEE
Q ss_conf 98703798889999917999899995999499997799805------78534888885799994---5----99989999
Q 006497 108 MILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNV------KANKSAHKESVRDLSFC---R----TDLKFCSC 174 (643)
Q Consensus 108 ~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~------~~~~~~~~~~I~~l~~s---~----d~~~l~s~ 174 (643)
...++|.+.|++++++ +++|++++.|++|++||..+.+. ......+...+..+... . +...++++
T Consensus 8 ~~~~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ECCCCCCCCCEEEEEE--CCEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEE
T ss_conf 2087636712799996--99999997999699878987887765404676542047716766675001579987689999
Q ss_pred ECCCCEEEEECCCCEEEEEE----------ECCCCCEEEEEECCC-----CCEEEEEECCCCEEEEECCCCCE-------
Q ss_conf 49991999977998245686----------026988489999599-----99899997899099998899931-------
Q 006497 175 SDDTTVKVWDFARCQEERSL----------TGHGWDVKSVDWHPT-----KSLLVSGGKDSLVKLWDAKSGRE------- 232 (643)
Q Consensus 175 s~dg~I~iwdl~~~~~~~~~----------~~~~~~V~~i~~sp~-----~~~l~sg~~dg~I~iwd~~s~~~------- 232 (643)
+.|+.|++|++........+ ..+...+..++|..+ +.++++++.|+.|++||+.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred ECCCCEEEEECCCCCCEEEEECCCCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCEEEE
T ss_conf 48991999982289820565124563243115789668999844788654217999838981999874047753410233
Q ss_pred -----------EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE------CCCCCEEEEEEECCCC
Q ss_conf -----------67963689867999994999999999799929999879986777950------6888837999906999
Q 006497 233 -----------LCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------GHRKDVTALAWHPFHE 295 (643)
Q Consensus 233 -----------~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~------~~~~~I~~i~~sp~~~ 295 (643)
......+...+.+++|++++ +|++++.|+.|++||+++++.+..+. .|...|++++|+| ++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg 243 (393)
T d1sq9a_ 166 NWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QG 243 (393)
T ss_dssp CCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-ST
T ss_pred EECCCEECCCCEECCCCCCCCEEEEEECCCC-EEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCC-CC
T ss_conf 1032000145100025789867899978999-899993898299986023321100001111124256387700466-53
Q ss_pred CEEEEEECCCC---EEEEECCCCCCEEEEE------------CCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 89999968995---9999779996508980------------335866489999399999999978993999935799
Q 006497 296 EYFVSGSLDGS---IFHWLVGHETPQVEIH------------NVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 296 ~~l~sgs~dg~---I~iwd~~~~~~~~~~~------------~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~ 358 (643)
.+|++++.|+. |++||+..+.....+. .+|...|++++|++|+++|++++.|++|++||++..
T Consensus 244 ~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred CEEEEECCCCCCCEEEECCCCCCEEEEEECCCCCCCCCEEEEECCCCCEEEECCCCCCCEEEEECCCCEEEEEECCCC
T ss_conf 201124289884210010353213444311566664310232023586660013898880698779998999999999
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.5e-25 Score=194.99 Aligned_cols=255 Identities=11% Similarity=0.118 Sum_probs=194.6
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE---EEECCCCCCEEEEEEECCC-CEEEEEECCCCE
Q ss_conf 338987037988899999179998999959994999977998057---8534888885799994599-989999499919
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK---ANKSAHKESVRDLSFCRTD-LKFCSCSDDTTV 180 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~---~~~~~~~~~I~~l~~s~d~-~~l~s~s~dg~I 180 (643)
+.+...++|++.|++|+|++++++|++++.|++|+|||++..... .....|...|.+++|++++ ..|++++.|+.|
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEECCCCCCE
T ss_conf 75976889989788899958999999997999299997569986368988558999889999958999789981265311
Q ss_pred EEEECCCCEEEEEEECCCCC-EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE----CC--CCCCEEEEEECCCCC
Q ss_conf 99977998245686026988-489999599998999978990999988999316796----36--898679999949999
Q 006497 181 KVWDFARCQEERSLTGHGWD-VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF----HG--HKNMVLCVKWNQNGN 253 (643)
Q Consensus 181 ~iwdl~~~~~~~~~~~~~~~-V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~----~~--~~~~i~~i~~sp~g~ 253 (643)
++|++...........+... .....+..+...+++++.|+.+++||++........ .. .........+..+++
T Consensus 82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCCCCCCCCEEEEEEEECCCC
T ss_conf 45420443200000111111111111111111111101222111020234443302300024300120000010001687
Q ss_pred EEEEEECCCCEEEEECCCCEEE---EEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEE------E----
Q ss_conf 9999979992999987998677---79506888837999906999899999689959999779996508------9----
Q 006497 254 WVLTASKDQIIKLYDIRAMKEL---ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQV------E---- 320 (643)
Q Consensus 254 ~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~------~---- 320 (643)
.+++++.|+.|++||++..+.. .........+.+..+.+.++..+++++.||.+.+|+.+...... .
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH 241 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred CEEEECCCCCEEEEECCCCCCCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEE
T ss_conf 02465179847887605676341112102542210146763699987886548995999980598640111235125655
Q ss_pred ----EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf ----803358664899993999999999789939999357999
Q 006497 321 ----IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 321 ----~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~ 359 (643)
....|...|++++|++++.+|++++.||.|++||++...
T Consensus 242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred EECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC
T ss_conf 5314777623543159966984479998799989999999894
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.5e-22 Score=174.34 Aligned_cols=240 Identities=23% Similarity=0.364 Sum_probs=196.4
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 33898703798889999917999899995999499997799805785348888857999945999899994999199997
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
+.+.....|...|+|+.| ++++|++|+.||+|+|||+++++.+..+.+|...|.+++| ++++|++++.|+.|++|+
T Consensus 6 ~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 6 QRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 81 (293)
T ss_dssp CCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEC--CCCEEECCCCCCCCCCCC
T ss_conf 898432899998899987--6999999928993999999999199999267787763423--630021001110110000
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE---EEEECCCCCCEEEEEECCCCCEEEEEECC
Q ss_conf 799824568602698848999959999899997899099998899931---67963689867999994999999999799
Q 006497 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRE---LCSFHGHKNMVLCVKWNQNGNWVLTASKD 261 (643)
Q Consensus 185 l~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~---~~~~~~~~~~i~~i~~sp~g~~l~s~s~d 261 (643)
+................ ..+......++++..++.+.+||..+... ...+..+...+.++.+. ...+++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d 157 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD 157 (293)
T ss_dssp SSSCCEEEEECCCCSCE--EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred CCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEC--CCCCCCCCCC
T ss_conf 02464100111111000--0111111000001356630686134454442121000113543110000--0220110699
Q ss_pred CCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEE
Q ss_conf 92999987998677795068888379999069998999996899599997799965089803358664899993999999
Q 006497 262 QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL 341 (643)
Q Consensus 262 g~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L 341 (643)
+.|++||+++.+.+..+..+...+..+.++ +..+++++.|+.|++||++...... ....+...+.. ++.++.+|
T Consensus 158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~v~~--~~~~~~~l 231 (293)
T d1p22a2 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLR-VLEGHEELVRC--IRFDNKRI 231 (293)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEE-EECCCSSCEEE--EECCSSEE
T ss_pred CCEEEECCCCCCEEEEECCCCCCCCCCCCC---CCEEEEECCCCEEEEEECCCCEEEE-EECCCCEEEEE--CCCCCEEE
T ss_conf 860410078883889971554453221689---8758876589989998665561466-52143100000--14541079
Q ss_pred EEEECCCEEEEEECCCC
Q ss_conf 99978993999935799
Q 006497 342 CSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 342 ~sgs~Dg~I~iWd~~~~ 358 (643)
++++.||.|++|++...
T Consensus 232 ~sg~~dg~i~iwd~~~~ 248 (293)
T d1p22a2 232 VSGAYDGKIKVWDLVAA 248 (293)
T ss_dssp EEEETTSCEEEEEHHHH
T ss_pred EEECCCCEEEEEECCCC
T ss_conf 99867997999988888
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.1e-22 Score=178.03 Aligned_cols=231 Identities=16% Similarity=0.259 Sum_probs=107.7
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 33898703798889999917999899995999499997799805785348888857999945999899994999199997
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
+.++++++|.+.|++++|++ |++++.||+|++||+.+. ...|...|.+++++++ ..+++++.|++|++|+
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred CEEEEECCCCCCEEEEEECC----EEEEECCCEEEEEECCCC-----CCCCCCCEEEEEECCC-CEEEEEEECCCCCCCC
T ss_conf 03499988798649999895----789848991999989998-----8887787899996599-7289886101222111
Q ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC-C
Q ss_conf 799824568602698848999959999899997899099998899931679636898679999949999999997999-2
Q 006497 185 FARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQ-I 263 (643)
Q Consensus 185 l~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg-~ 263 (643)
+...+ ....+.++++++++..+++ +.++.+.+|+..+++.+..+.. ...+.+ ++++++.+++++.++ .
T Consensus 74 ~~~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~v~~~~~~~ 142 (287)
T d1pgua2 74 ITKHE-------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRL-NSPGSA--VSLSQNYVAVGLEEGNT 142 (287)
T ss_dssp EEEEE-------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEEC-SSCEEE--EEECSSEEEEEETTTSC
T ss_pred CCCCC-------CCCCEEEEEECCCCCEEEE-EECCCCEEEECCCEEEEEECCC-CCEEEE--EECCCCCEEEECCCCCE
T ss_conf 11111-------1221014664167856999-6033210000110035431012-220356--52147511100022100
Q ss_pred EEEEECCCCEEEEEEE-CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCC-----
Q ss_conf 9999879986777950-6888837999906999899999689959999779996508980335866489999399-----
Q 006497 264 IKLYDIRAMKELESFR-GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPI----- 337 (643)
Q Consensus 264 I~iwd~~~~~~~~~~~-~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d----- 337 (643)
+++|++...+....+. .+...+++++|++ ++.+|++++.||.|++||+.+..........|...|++++|+++
T Consensus 143 v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 221 (287)
T d1pgua2 143 IQVFKLSDLEVSFDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGAN 221 (287)
T ss_dssp EEEEETTEEEEEEECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC----
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECC-CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 021000122100012102478536999516-7652110111111000000233211000111111110000013654100
Q ss_pred -----CCEEEEEECCCEEEEEECCC
Q ss_conf -----99999997899399993579
Q 006497 338 -----GYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 338 -----~~~L~sgs~Dg~I~iWd~~~ 357 (643)
+.+|++++.|++|++|++++
T Consensus 222 ~~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 222 EEEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp --CCSCCEEEEEETTSCEEEEESSC
T ss_pred CCCCCCCEEEEECCCCEEEEEECCC
T ss_conf 1267887027664999599988899
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.93 E-value=1.1e-22 Score=177.96 Aligned_cols=246 Identities=10% Similarity=0.015 Sum_probs=191.0
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC--CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 8887769999938999899997899--09999099983389870379888999991799989999599949999779980
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSG--EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN 147 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg--~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~ 147 (643)
.|...|++++|++|+++|++++.+. .|++||.++++. ..+..|...|.+++|++++++|++++.++.+++|+..+.+
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 118 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK 118 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCCCEEEEEECCCCCE-EEEECCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 699988889998999999999928998999998999948-8750897127741211454321000111110000012221
Q ss_pred EEEEECCCCCCEEEEEEECCCCEEEEEE----------CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 5785348888857999945999899994----------999199997799824568602698848999959999899997
Q 006497 148 VKANKSAHKESVRDLSFCRTDLKFCSCS----------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG 217 (643)
Q Consensus 148 ~~~~~~~~~~~I~~l~~s~d~~~l~s~s----------~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~ 217 (643)
....+..+...+.+++|++++++|+.+. .++.+++||+...+... +..+...+..++|+++++.|++++
T Consensus 119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEE
T ss_pred EEEEEECCCCCCCCHHHCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCCEEE-ECCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 0000001355202301213225665212331211000256542663045571353-035432211001257799999995
Q ss_pred CCCCEEEEECCCCCE-------EEEECC------------------------------------CCCCEEEEEECCCCC-
Q ss_conf 899099998899931-------679636------------------------------------898679999949999-
Q 006497 218 KDSLVKLWDAKSGRE-------LCSFHG------------------------------------HKNMVLCVKWNQNGN- 253 (643)
Q Consensus 218 ~dg~I~iwd~~s~~~-------~~~~~~------------------------------------~~~~i~~i~~sp~g~- 253 (643)
.++.+.+||...... ...+.. .......+...+++.
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred CCCCEECCCCCCCCEEECCCCCEEEEECCCCCCCCCEECCCCCCCCCCCEEECCCCCCEEECCCCCCCEEEEEECCCCCE
T ss_conf 99855753335440232036411798524696012068777671553113652665400101247675267541389856
Q ss_pred ------------EEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEE
Q ss_conf ------------99999799929999879986777950688883799990699989999968995999977999650898
Q 006497 254 ------------WVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEI 321 (643)
Q Consensus 254 ------------~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 321 (643)
++++++.++.|++||+.+.+.. . +...|.+++|++ ++++|++++.||.|++|+++.+.....+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~---~~~~v~~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-E---VKNNLTDLRLSA-DRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-E---EEEEEEEEEECT-TSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred EEEEEECCCCEEEEEECCCCCEEEEEECCCCEEE-E---ECCCCCEEEECC-CCCEEEEEECCCEEEEEECCCCCCCEEE
T ss_conf 9999735997069996489987999979997498-8---648868799999-8989999978994999999999854599
Q ss_pred E
Q ss_conf 0
Q 006497 322 H 322 (643)
Q Consensus 322 ~ 322 (643)
.
T Consensus 353 ~ 353 (360)
T d1k32a3 353 E 353 (360)
T ss_dssp C
T ss_pred E
T ss_conf 8
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=1e-22 Score=178.28 Aligned_cols=292 Identities=9% Similarity=0.051 Sum_probs=199.9
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-----CCCCCCEEEEEECCCCCEEEE-EECCCCEE
Q ss_conf 750688877699999389998999978990999909998338987-----037988899999179998999-95999499
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMIL-----QAHDHAIRSMVWSHNDNWMVS-GDDGGAIK 139 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l-----~~h~~~V~~i~~s~~~~~L~s-g~~dg~I~ 139 (643)
.++..|. .+..++|+|||++|++++.|+.|++||+.+++..... ..|...+.+++|++|+++|++ +..++.++
T Consensus 56 ~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~ 134 (426)
T d1hzua2 56 KVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFA 134 (426)
T ss_dssp EEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEE
T ss_pred EEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEECCCCCEEEEEECCCCEEE
T ss_conf 9996899-803899989999999995899889997568860489998678887645885002688987999635897699
Q ss_pred EEECCCCCEEEEECCCCCCE-----------EEEEEECCCCEEEEEEC-CCCEEEEECCCCEEE-EEEECCCCCEEEEEE
Q ss_conf 99779980578534888885-----------79999459998999949-991999977998245-686026988489999
Q 006497 140 YWQNNMNNVKANKSAHKESV-----------RDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEE-RSLTGHGWDVKSVDW 206 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~~~I-----------~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~-~~~~~~~~~V~~i~~ 206 (643)
+||..+..+......+...+ ..+.++.++..++.... .+.+.+++....... .....+...+..+.+
T Consensus 135 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (426)
T d1hzua2 135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGW 214 (426)
T ss_dssp EEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEECCCCCCEEEEE
T ss_conf 98577641257862267773643642788503899878787888852789769999924665204577566775376137
Q ss_pred CCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCC--CCCEEEEEECCCCC-EEE--EEECCCCEEEEECCC-------CE
Q ss_conf 59999899997-8990999988999316796368--98679999949999-999--997999299998799-------86
Q 006497 207 HPTKSLLVSGG-KDSLVKLWDAKSGRELCSFHGH--KNMVLCVKWNQNGN-WVL--TASKDQIIKLYDIRA-------MK 273 (643)
Q Consensus 207 sp~~~~l~sg~-~dg~I~iwd~~s~~~~~~~~~~--~~~i~~i~~sp~g~-~l~--s~s~dg~I~iwd~~~-------~~ 273 (643)
++++++++++. .+..+.+++..+++.+..+... ......+.+...+. .+. ....|+.+.+|+... ++
T Consensus 215 ~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~ 294 (426)
T d1hzua2 215 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWK 294 (426)
T ss_dssp CTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTS
T ss_pred CCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCE
T ss_conf 78886788642011000000025562788750587444342011006987745774157896598852256652033025
Q ss_pred EEEEEECCCCCEEEEEEECCCCCEEEE-------EECCCCEEEEECCCCCCEEEEE--------CCCCCCEEEEEECCCC
Q ss_conf 777950688883799990699989999-------9689959999779996508980--------3358664899993999
Q 006497 274 ELESFRGHRKDVTALAWHPFHEEYFVS-------GSLDGSIFHWLVGHETPQVEIH--------NVHDNTVWDLAWHPIG 338 (643)
Q Consensus 274 ~~~~~~~~~~~I~~i~~sp~~~~~l~s-------gs~dg~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~s~d~ 338 (643)
....+.+|...+..++|+| ++.+|++ ++.+++|++||+.+......+. ..+...|.+++|++||
T Consensus 295 ~~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG 373 (426)
T d1hzua2 295 KVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG 373 (426)
T ss_dssp EEEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred EEEEEECCCCCEEEEECCC-CCCEEEEEECCCCCCCCCCEEEEEECCCCCCCEEEECCCHHCCCCCCCCCEEEEEECCCC
T ss_conf 8689866887636787489-986188850679880228879999898787670895021102567788518987999999
Q ss_pred CEEEEE-----ECCCEEEEEECCCCC
Q ss_conf 999999-----789939999357999
Q 006497 339 YLLCSG-----SNDHTTKFWCRNRPG 359 (643)
Q Consensus 339 ~~L~sg-----s~Dg~I~iWd~~~~~ 359 (643)
++++.. +.|+.|++||.++.+
T Consensus 374 k~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 374 DEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp SEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred CEEEEEEECCCCCCCEEEEEECCCCE
T ss_conf 99999972488889829999999873
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=3.9e-20 Score=159.21 Aligned_cols=264 Identities=13% Similarity=0.071 Sum_probs=207.5
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 99997899099990999833898703798889999917999899-99599949999779980578534888885799994
Q 006497 87 LITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFC 165 (643)
Q Consensus 87 L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s 165 (643)
.++.+.+++|.+||.++++.+.++.. ...+..++|++|+++|+ ++..++.|++||+.+.+.+..+..+. .+..++|+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~ 82 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVS 82 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCC
T ss_conf 99978999899999999959999988-99836999928989999997899989999999894103200024-64311000
Q ss_pred CCCCEEEE-EECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCE
Q ss_conf 59998999-9499919999779982456860269884899995999989999-789909999889993167963689867
Q 006497 166 RTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGRELCSFHGHKNMV 243 (643)
Q Consensus 166 ~d~~~l~s-~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg-~~dg~I~iwd~~s~~~~~~~~~~~~~i 243 (643)
+++..+++ +..++.+.+|+..+.+....+.. .....++.+++++..+++. ..+..+.+|+..+.+.+..+.. ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP 160 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred CCCCCCCCCCCCCCEEEECCCCCCEEEEECCC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCC
T ss_conf 11111111111110011001243024320244-444237876058971554201111001100014630353156-7884
Q ss_pred EEEEECCCCCEEEEEECC-CCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEE---CCCCEEEEECCCCCCEE
Q ss_conf 999994999999999799-92999987998677795068888379999069998999996---89959999779996508
Q 006497 244 LCVKWNQNGNWVLTASKD-QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGS---LDGSIFHWLVGHETPQV 319 (643)
Q Consensus 244 ~~i~~sp~g~~l~s~s~d-g~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs---~dg~I~iwd~~~~~~~~ 319 (643)
.++.+++++..+++++.+ +.+.+|+....+....+. .......+++++ ++..++.+. .++.|++||..+.+...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~~~ 238 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKITA 238 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEEEE
T ss_pred EEEEEECCCCCEEEECCCCCCCCCCCCCCEEEEECCC-CCCCCCEEECCC-CCCCCCCCCCCCEEEEEEEEECCCCEEEE
T ss_conf 2888604654013101211111111111000111013-357750311011-11011110021000023236569981999
Q ss_pred EEECCCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCC
Q ss_conf 9803358664899993999999-99978993999935799
Q 006497 320 EIHNVHDNTVWDLAWHPIGYLL-CSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 320 ~~~~~h~~~V~~l~~s~d~~~L-~sgs~Dg~I~iWd~~~~ 358 (643)
.+.. ...+++++|++|+++| ++++.|+.|++||++..
T Consensus 239 ~~~~--~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 239 RIPV--GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEC--CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EECC--CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCC
T ss_conf 9848--9987799991898999999899996999999999
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=8e-22 Score=171.70 Aligned_cols=287 Identities=10% Similarity=0.026 Sum_probs=179.4
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE--EEEC---CCCCCEEEEEECCCCCEE-EEEECCCCE
Q ss_conf 9750688877699999389998999978990999909998338--9870---379888999991799989-999599949
Q 006497 65 HTSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFE--MILQ---AHDHAIRSMVWSHNDNWM-VSGDDGGAI 138 (643)
Q Consensus 65 ~~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~--~~l~---~h~~~V~~i~~s~~~~~L-~sg~~dg~I 138 (643)
...+..+. .+..++|+|||++|++++.|+.|++||+.+.+.. ..+. .|.+.+.+..|++|+++| +++..++.|
T Consensus 55 ~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v 133 (432)
T d1qksa2 55 KTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133 (432)
T ss_dssp EEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred EEEEECCC-CEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEE
T ss_conf 99973799-71379988999999998289997899810898128899844889877698432188888899981789827
Q ss_pred EEEECCCCCEEEEECC-----------CCCCEEEEEEECCCCEEE-EEECCCCEEEEECCCCEEEEEEE-CCCCCEEEEE
Q ss_conf 9997799805785348-----------888857999945999899-99499919999779982456860-2698848999
Q 006497 139 KYWQNNMNNVKANKSA-----------HKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLT-GHGWDVKSVD 205 (643)
Q Consensus 139 ~iwd~~~~~~~~~~~~-----------~~~~I~~l~~s~d~~~l~-s~s~dg~I~iwdl~~~~~~~~~~-~~~~~V~~i~ 205 (643)
++||..+.+.+..+.. .......+.+++++..++ +...++.|.+||..+.+...... .+...+.+++
T Consensus 134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred EEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCE
T ss_conf 99907655422540247764352201688850589987899989999816882999984378752279983367542653
Q ss_pred ECCCCCEEEEEEC-CCCEEEEECCCCCEEEEECC-----CCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCE-----
Q ss_conf 9599998999978-99099998899931679636-----898679999949999999997-99929999879986-----
Q 006497 206 WHPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHG-----HKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK----- 273 (643)
Q Consensus 206 ~sp~~~~l~sg~~-dg~I~iwd~~s~~~~~~~~~-----~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~----- 273 (643)
|+++++++++++. +..+.++|.++.+.+..+.. +........+...+....+.. .++.|.+|+.....
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~ 293 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNA 293 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCCCCCEECCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 88988799995166636777614452688872148622456766410148988310213568835876245665554656
Q ss_pred --EEEEEECCCCC-------------------------EEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCC
Q ss_conf --77795068888-------------------------379999069998999996899599997799965089803358
Q 006497 274 --ELESFRGHRKD-------------------------VTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHD 326 (643)
Q Consensus 274 --~~~~~~~~~~~-------------------------I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 326 (643)
....+..+... ...+++ + ++..+++++.|+.+++|++.+...+ ..|.
T Consensus 294 ~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~l----~~~~ 367 (432)
T d1qksa2 294 WKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAGI----TEGQ 367 (432)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHTC----CSSC
T ss_pred CEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCEEEEEEE-E-ECHHHCCCCCCCCEEECCCCCCCCC----CCCC
T ss_conf 57779988689976888726886410211267888770359999-9-6246104556784486334344445----7899
Q ss_pred CCEEEEEECCCCCEEEEEE-----CCCEEEEEECCCC
Q ss_conf 6648999939999999997-----8993999935799
Q 006497 327 NTVWDLAWHPIGYLLCSGS-----NDHTTKFWCRNRP 358 (643)
Q Consensus 327 ~~V~~l~~s~d~~~L~sgs-----~Dg~I~iWd~~~~ 358 (643)
..+.+++|++||++++.+. .||.|.|||..+.
T Consensus 368 ~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~ 404 (432)
T d1qksa2 368 PRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 404 (432)
T ss_dssp CEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCC
T ss_conf 8689767989999999997048888886899999995
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=2.8e-20 Score=160.35 Aligned_cols=268 Identities=6% Similarity=0.002 Sum_probs=202.9
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCC--CCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCC----
Q ss_conf 98999978990999909998338987037--98889999917999899-995999499997799805785348888----
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAH--DHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKE---- 157 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h--~~~V~~i~~s~~~~~L~-sg~~dg~I~iwd~~~~~~~~~~~~~~~---- 157 (643)
++|++++.|++|.|||+++.+.+..+..+ ...+.+++|++|+++++ +++.++.|.+||+.+++.+..+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~ 81 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCC
T ss_conf 69999767998999999999499999877889982379999998999999789994999999999298887247773125
Q ss_pred -CEEEEEEECCCCEEEEEE------------CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf -857999945999899994------------9991999977998245686026988489999599998999978990999
Q 006497 158 -SVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKL 224 (643)
Q Consensus 158 -~I~~l~~s~d~~~l~s~s------------~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~i 224 (643)
.+..++|++++++++++. .+..+.+||..+.+....+.. ...+.+++|+++++++++++. .+.+
T Consensus 82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC-CCCCEEEEECCCCCEEEEECC--CCCE
T ss_conf 4025489868775799950477620342034555212035667759884145-687218998688888999717--7505
Q ss_pred EECCCCCEEEEECCCCCCEEEEEECC------------------------CCCEEEEEECCCCEEEEECCCCEEEE-EEE
Q ss_conf 98899931679636898679999949------------------------99999999799929999879986777-950
Q 006497 225 WDAKSGRELCSFHGHKNMVLCVKWNQ------------------------NGNWVLTASKDQIIKLYDIRAMKELE-SFR 279 (643)
Q Consensus 225 wd~~s~~~~~~~~~~~~~i~~i~~sp------------------------~g~~l~s~s~dg~I~iwd~~~~~~~~-~~~ 279 (643)
||..+++....+..+... ....+.+ +...+.....++.+.+||..+++... .+.
T Consensus 159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCEEEEEEC
T ss_conf 663037278886147754-3311357763140146653124663244410366045403676179998688858889832
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 68888379999069998999996899599997799965089803358664899993999999999789939999357999
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 280 ~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~ 359 (643)
.+...+..+.+++ ++.+++.. ++.|++||+.+.+....+. +...+.+++|++|+++|++++.|+.|++||.+..+
T Consensus 238 ~~~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 238 IMDVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCCCEEEEEECC-CCEEEEEC--CCCEEEEECCCCCEEEEEC--CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 8875058887426-61399973--5528999898896999974--89988999997899999999499929999999876
Q ss_pred CC
Q ss_conf 95
Q 006497 360 DT 361 (643)
Q Consensus 360 ~~ 361 (643)
..
T Consensus 313 ~v 314 (337)
T d1pbyb_ 313 KK 314 (337)
T ss_dssp EE
T ss_pred EE
T ss_conf 98
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=1.9e-20 Score=161.49 Aligned_cols=275 Identities=11% Similarity=0.027 Sum_probs=195.7
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE-----CCCCCCEE
Q ss_conf 8999978990999909998338987037988899999179998999959994999977998057853-----48888857
Q 006497 86 RLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK-----SAHKESVR 160 (643)
Q Consensus 86 ~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~-----~~~~~~I~ 160 (643)
++++...||.|+|||..+++.+.++..+ ..+..++|++||++|++++.|+.|++||+++.+..... ..|...+.
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~ 112 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES 112 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEEEECCCCCCCEEE
T ss_conf 9999759997999999999599999689-980389998999999999589988999756886048999867888764588
Q ss_pred EEEEECCCCEEEE-EECCCCEEEEECCCCEEEEEEECCCC-----------CEEEEEECCCCCEEEEEEC-CCCEEEEEC
Q ss_conf 9999459998999-94999199997799824568602698-----------8489999599998999978-990999988
Q 006497 161 DLSFCRTDLKFCS-CSDDTTVKVWDFARCQEERSLTGHGW-----------DVKSVDWHPTKSLLVSGGK-DSLVKLWDA 227 (643)
Q Consensus 161 ~l~~s~d~~~l~s-~s~dg~I~iwdl~~~~~~~~~~~~~~-----------~V~~i~~sp~~~~l~sg~~-dg~I~iwd~ 227 (643)
+++|++|++++++ +..++.+.+||.........+..+.. ....+..++++..++.... .+.+.+++.
T Consensus 113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~ 192 (426)
T d1hzua2 113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192 (426)
T ss_dssp CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEE
T ss_conf 50026889879996358976999857764125786226777364364278850389987878788885278976999992
Q ss_pred CCCCEE-EEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEECCC--CCEEEEEEECCCCCEEE--EE
Q ss_conf 999316-79636898679999949999999997-99929999879986777950688--88379999069998999--99
Q 006497 228 KSGREL-CSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFRGHR--KDVTALAWHPFHEEYFV--SG 301 (643)
Q Consensus 228 ~s~~~~-~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~--~~I~~i~~sp~~~~~l~--sg 301 (643)
.....+ .....+...+..+.|++++++++++. .+..+.+++..+.+.+..+.... .......+.......+. ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred CCCCCEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECCCCCCEEEECC
T ss_conf 46652045775667753761377888678864201100000002556278875058744434201100698774577415
Q ss_pred ECCCCEEEEECCCCC------CEEEEECCCCCCEEEEEECCCCCEEEE-------EECCCEEEEEECCCCCCC
Q ss_conf 689959999779996------508980335866489999399999999-------978993999935799995
Q 006497 302 SLDGSIFHWLVGHET------PQVEIHNVHDNTVWDLAWHPIGYLLCS-------GSNDHTTKFWCRNRPGDT 361 (643)
Q Consensus 302 s~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~d~~~L~s-------gs~Dg~I~iWd~~~~~~~ 361 (643)
+.|+.+.+|+..... .....+..|...++.++|+||+++|++ +..|++|++||+......
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~ 345 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 345 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred CCCCEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCCC
T ss_conf 7896598852256652033025868986688763678748998618885067988022887999989878767
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.90 E-value=5.7e-18 Score=143.27 Aligned_cols=245 Identities=12% Similarity=0.111 Sum_probs=194.1
Q ss_pred CCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCCEEE
Q ss_conf 7769999938999899-9978990999909998338987037988899999179998999-9599949999779980578
Q 006497 73 CSINRVLWTPTGRRLI-TGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVS-GDDGGAIKYWQNNMNNVKA 150 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~-tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~s-g~~dg~I~iwd~~~~~~~~ 150 (643)
..+..++|++|+++|+ ++..++.|++||..+++.+..+..+. .+..+.|+++++.+++ +..++.+.+|+..+.+...
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCEEEEEECCC-CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEE
T ss_conf 9836999928989999997899989999999894103200024-643110001111111111111001100124302432
Q ss_pred EECCCCCCEEEEEEECCCCEEE-EEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECC-CCEEEEECC
Q ss_conf 5348888857999945999899-99499919999779982456860269884899995999989999789-909999889
Q 006497 151 NKSAHKESVRDLSFCRTDLKFC-SCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKD-SLVKLWDAK 228 (643)
Q Consensus 151 ~~~~~~~~I~~l~~s~d~~~l~-s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~d-g~I~iwd~~ 228 (643)
.+.. .....++.+++++..++ ++..+..+.+|+..+......+.. ...+.++.+++++..++++..+ +.+.+|+..
T Consensus 111 ~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 111 TVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ECCC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEECCC-CCCCEEEEEECCCCCEEEECCCCCCCCCCCCC
T ss_conf 0244-444237876058971554201111001100014630353156-78842888604654013101211111111111
Q ss_pred CCCEEEEECCCCCCEEEEEECCCCCEEEEEEC---CCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCE-EEEEECC
Q ss_conf 99316796368986799999499999999979---9929999879986777950688883799990699989-9999689
Q 006497 229 SGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY-FVSGSLD 304 (643)
Q Consensus 229 s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~-l~sgs~d 304 (643)
..+....+. .......++++++++.++++.. ++.|++||+.+++.+..+.. ...+.+++|++ ++++ +++++.+
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~va~sp-dg~~l~va~~~~ 265 (301)
T d1l0qa2 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV-GPDPAGIAVTP-DGKKVYVALSFC 265 (301)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC-CSSEEEEEECT-TSSEEEEEETTT
T ss_pred CEEEEECCC-CCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECC-CCCEEEEEEEC-CCCEEEEEECCC
T ss_conf 000111013-357750311011110111100210000232365699819999848-99877999918-989999998999
Q ss_pred CCEEEEECCCCCCEEEEEC
Q ss_conf 9599997799965089803
Q 006497 305 GSIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 305 g~I~iwd~~~~~~~~~~~~ 323 (643)
+.|++||+.+.+....+..
T Consensus 266 ~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 266 NTVSVIDTATNTITATMAV 284 (301)
T ss_dssp TEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEECCCCEEEEEEEC
T ss_conf 9699999999959999968
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.89 E-value=8.8e-21 Score=164.00 Aligned_cols=278 Identities=10% Similarity=-0.010 Sum_probs=201.5
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCC
Q ss_conf 99938999899997899099990999833898703-798889999917999899-9959994999977998057853488
Q 006497 78 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAH 155 (643)
Q Consensus 78 i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~~s~~~~~L~-sg~~dg~I~iwd~~~~~~~~~~~~~ 155 (643)
++|++++++|++++.++.|.+||+++++.+.++.. +...+.+++|++|+++++ ++..++.|++||+.+++....+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCCCCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCCCEEEEEECCCCCEEEEECCCCEEEEEECCC
T ss_conf 55889996999986999799999999989999994899970459997898999999789993999967567131231036
Q ss_pred C------CCEEEEEEECCCCEEEEEE------------CCCCEEEEECCCCEEEEEEEC--CCCCEEEEEECCCCCEEEE
Q ss_conf 8------8857999945999899994------------999199997799824568602--6988489999599998999
Q 006497 156 K------ESVRDLSFCRTDLKFCSCS------------DDTTVKVWDFARCQEERSLTG--HGWDVKSVDWHPTKSLLVS 215 (643)
Q Consensus 156 ~------~~I~~l~~s~d~~~l~s~s------------~dg~I~iwdl~~~~~~~~~~~--~~~~V~~i~~sp~~~~l~s 215 (643)
. ..+..++|++|+++++++. .+..+.+|+..+++....+.. ....+..+.++.++.+++.
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCCEEEEEECCCCEEEEE
T ss_conf 54345477417999905888899970577521565146762489985256326568873102474399995278789984
Q ss_pred EECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCC--------------------------CEEEEEECCCCEEEEEC
Q ss_conf 9789909999889993167963689867999994999--------------------------99999979992999987
Q 006497 216 GGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNG--------------------------NWVLTASKDQIIKLYDI 269 (643)
Q Consensus 216 g~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g--------------------------~~l~s~s~dg~I~iwd~ 269 (643)
+..+.+||+.+++.+..+..+. ....+.+++++ ..++++..+..+.+||+
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (346)
T d1jmxb_ 162 ---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL 237 (346)
T ss_dssp ---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred ---CCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf ---7962699806997899996489-866237712552899986499816765123111267325754047834999977
Q ss_pred CCCEEEE-EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 9986777-950688883799990699989999968995999977999650898033586648999939999999997899
Q 006497 270 RAMKELE-SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDH 348 (643)
Q Consensus 270 ~~~~~~~-~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg 348 (643)
.++.... .+..+...+..+.+++. +.+++... ++.|.+||..+.+....+.. ...+++++|++|+++|++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~v~v~d~~~~~~~~~~~~--~~~~~~va~s~DG~~l~v~~~d~ 313 (346)
T d1jmxb_ 238 KTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGV-LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFN 313 (346)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSS-CTTEEEEE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSS
T ss_pred CCCCEEEEEEECCCCEEEEEEEECC-CCEEEEEC-CCEEEEEECCCCCEEEEECC--CCCEEEEEECCCCCEEEEEECCC
T ss_conf 7883687876315660688897179-97899942-98389998999939999749--99778999968999999994899
Q ss_pred EEEEEECCCCCCCCC
Q ss_conf 399993579999532
Q 006497 349 TTKFWCRNRPGDTAR 363 (643)
Q Consensus 349 ~I~iWd~~~~~~~~~ 363 (643)
.|++||.+..+....
T Consensus 314 ~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 314 DLAVFNPDTLEKVKN 328 (346)
T ss_dssp EEEEEETTTTEEEEE
T ss_pred CEEEEECCCCCEEEE
T ss_conf 299999965879799
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.5e-18 Score=144.07 Aligned_cols=275 Identities=9% Similarity=0.031 Sum_probs=199.2
Q ss_pred CHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCEEECEEEEEECCCCCCEEEEEECCCCCEEE-E
Q ss_conf 404568743247886326767310023902120385314761699984010079975068887769999938999899-9
Q 006497 11 DYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRLI-T 89 (643)
Q Consensus 11 ~~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~spdg~~L~-t 89 (643)
+|..+.....++++|+..+.+. .....+..+...+.+++|++||++|+ +
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~------------------------------~~~i~~~~~~~~~~~i~~spDg~~l~v~ 51 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAV------------------------------DKVITIADAGPTPMVPMVAPGGRIAYAT 51 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE------------------------------EEEEECTTCTTCCCCEEECTTSSEEEEE
T ss_pred EEEEEECCCCEEEEEECCCCEE------------------------------EEEEECCCCCCCCCEEEECCCCCEEEEE
T ss_conf 6999976799899999999949------------------------------9999877889982379999998999999
Q ss_pred EECCCCEEEEECCCCCEEEEECCCCC-----CEEEEEECCCCCEEEEEE------------CCCCEEEEECCCCCEEEEE
Q ss_conf 97899099990999833898703798-----889999917999899995------------9994999977998057853
Q 006497 90 GSQSGEFTLWNGQSFNFEMILQAHDH-----AIRSMVWSHNDNWMVSGD------------DGGAIKYWQNNMNNVKANK 152 (643)
Q Consensus 90 gs~dg~I~iwd~~~~~~~~~l~~h~~-----~V~~i~~s~~~~~L~sg~------------~dg~I~iwd~~~~~~~~~~ 152 (643)
++.++.|.+||..+++.+..+..+.. .+..++|++++++++++. .+..+.+||..+.+....+
T Consensus 52 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 131 (337)
T d1pbyb_ 52 VNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAF 131 (337)
T ss_dssp ETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEE
T ss_pred ECCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEEC
T ss_conf 78999499999999929888724777312540254898687757999504776203420345552120356677598841
Q ss_pred CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCC-----------------------
Q ss_conf 488888579999459998999949991999977998245686026988489999599-----------------------
Q 006497 153 SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPT----------------------- 209 (643)
Q Consensus 153 ~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~----------------------- 209 (643)
.. ...+..++|+++++++++++. .+.+||..+.+....+..+... ....+.++
T Consensus 132 ~~-~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
T d1pbyb_ 132 EA-PRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp EC-CSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred CC-CCCCEEEEECCCCCEEEEECC--CCCEEEEECCCEEEEEECCCCC-CCCEECCCCCEEECCCCCCCEEEEEEEEEEE
T ss_conf 45-687218998688888999717--7505663037278886147754-3311357763140146653124663244410
Q ss_pred -CCEEEEEECCCCEEEEECCCCCEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf -99899997899099998899931679-6368986799999499999999979992999987998677795068888379
Q 006497 210 -KSLLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 210 -~~~l~sg~~dg~I~iwd~~s~~~~~~-~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
...+.....++.+.+||..+++.... +..+...+.++.+++++.+++.+ ++.|++||+.+++.+..+. +...+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~-~~~~~~~ 284 (337)
T d1pbyb_ 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP-LPHSYYS 284 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-CSSCCCE
T ss_pred CCCEEEECCCCCCEEEEECCCCCEEEEEECCCCCCEEEEEECCCCEEEEEC--CCCEEEEECCCCCEEEEEC-CCCCEEE
T ss_conf 366045403676179998688858889832887505888742661399973--5528999898896999974-8998899
Q ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEC
Q ss_conf 999069998999996899599997799965089803
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 288 i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 323 (643)
++|++ ++++|++++.++.|++||.++.+....+..
T Consensus 285 ~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 285 VNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEEC
T ss_conf 99978-999999994999299999998769899988
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.9e-17 Score=139.45 Aligned_cols=267 Identities=10% Similarity=0.016 Sum_probs=188.5
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE--EEE---CCCCC
Q ss_conf 9998999978990999909998338987037988899999179998999959994999977998057--853---48888
Q 006497 83 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK--ANK---SAHKE 157 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~--~~~---~~~~~ 157 (643)
+.-++++.+.+|.|.|||..+++.+..+..+ ..+..++|++|+++|++++.|+.|++||+.+.+.. ..+ ..+..
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CCEEEEEECCCCEEEEEECCCCCEEEEEECC-CCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCEEEEEEECCCCCCC
T ss_conf 8289999769997999989998399997379-971379988999999998289997899810898128899844889877
Q ss_pred CEEEEEEECCCCEE-EEEECCCCEEEEECCCCEEEEEEEC-----------CCCCEEEEEECCCCCEEE-EEECCCCEEE
Q ss_conf 85799994599989-9994999199997799824568602-----------698848999959999899-9978990999
Q 006497 158 SVRDLSFCRTDLKF-CSCSDDTTVKVWDFARCQEERSLTG-----------HGWDVKSVDWHPTKSLLV-SGGKDSLVKL 224 (643)
Q Consensus 158 ~I~~l~~s~d~~~l-~s~s~dg~I~iwdl~~~~~~~~~~~-----------~~~~V~~i~~sp~~~~l~-sg~~dg~I~i 224 (643)
.+.+..|++|+++| +++..++.|++||..+.+.+..+.. .......+.+++++..++ +...++.|.+
T Consensus 110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~ 189 (432)
T d1qksa2 110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL 189 (432)
T ss_dssp EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred EEEECCCCCCCCEEEEECCCCCEEEEEECCCCCCEEEECCCCCCCCCEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
T ss_conf 69843218888889998178982799907655422540247764352201688850589987899989999816882999
Q ss_pred EECCCCCEEEEEC-CCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCEEEEEEECC-----CCCEEEEEEECCCCCE
Q ss_conf 9889993167963-68986799999499999999979-992999987998677795068-----8883799990699989
Q 006497 225 WDAKSGRELCSFH-GHKNMVLCVKWNQNGNWVLTASK-DQIIKLYDIRAMKELESFRGH-----RKDVTALAWHPFHEEY 297 (643)
Q Consensus 225 wd~~s~~~~~~~~-~~~~~i~~i~~sp~g~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~-----~~~I~~i~~sp~~~~~ 297 (643)
||..+.+...... .+...+..+.|+++++++++++. +..+.++|.++.+.+..+... ........+.. .+..
T Consensus 190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~ 268 (432)
T d1qksa2 190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPV 268 (432)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEE
T ss_pred EECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCEECCC-CCCE
T ss_conf 984378752279983367542653889887999951666367776144526888721486224567664101489-8831
Q ss_pred EEEEE-CCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 99996-899599997799965089803358664899993999999999789939999357
Q 006497 298 FVSGS-LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 298 l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~ 356 (643)
.++.. .++.|.+|....... ..|...+....+++++..+++++.+..+++|...
T Consensus 269 ~~~~~lg~~~v~~~~~~~~~~-----~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~ 323 (432)
T d1qksa2 269 WATSHMGDDSVALIGTDPEGH-----PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDA 323 (432)
T ss_dssp EEEEBSSSSEEEEEECCTTTC-----TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEEC
T ss_pred ECCCCCCCCEEEECCCCCCCC-----CCCCCEEEEEEECCCCCEEEEEECCCCCCEEECC
T ss_conf 021356883587624566555-----4656577799886899768887268864102112
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.86 E-value=1.3e-16 Score=133.36 Aligned_cols=285 Identities=9% Similarity=-0.045 Sum_probs=199.1
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE--------
Q ss_conf 5068887769999938999899997-----899099990999833898703798889999917999899995--------
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-------- 133 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs-----~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~-------- 133 (643)
....+...+.+++++||++.+++.. .++.|.+||..+++.+..+..+... .++|++|+++|+++.
T Consensus 15 a~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~ 92 (373)
T d2madh_ 15 AAGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAK 92 (373)
T ss_pred HCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEEECCCCCCC
T ss_conf 1456789865630189997899973422578765999989999799999579886--07986899989999605775321
Q ss_pred --CCCCEEEEECCCCCEEEEECCCCCCE-------EEEEEECCCCEEEEEE--CCCCEEEEECCCCEEEEEEECCCCCEE
Q ss_conf --99949999779980578534888885-------7999945999899994--999199997799824568602698848
Q 006497 134 --DGGAIKYWQNNMNNVKANKSAHKESV-------RDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVK 202 (643)
Q Consensus 134 --~dg~I~iwd~~~~~~~~~~~~~~~~I-------~~l~~s~d~~~l~s~s--~dg~I~iwdl~~~~~~~~~~~~~~~V~ 202 (643)
.++.|.+||..+++....+..+.... ..+.|+++++.++... .++.+.+|+....+..... ....
T Consensus 93 ~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 168 (373)
T d2madh_ 93 GKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLL----SSPT 168 (373)
T ss_pred CCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCEEEEEE----CCCE
T ss_conf 245318999977789388897268851368516897089985899379999869874677623687289982----4520
Q ss_pred EEEECCCCCE-EEEEECCCCEEEEECCCCCEEEEECCC------CCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE
Q ss_conf 9999599998-999978990999988999316796368------986799999499999999979992999987998677
Q 006497 203 SVDWHPTKSL-LVSGGKDSLVKLWDAKSGRELCSFHGH------KNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL 275 (643)
Q Consensus 203 ~i~~sp~~~~-l~sg~~dg~I~iwd~~s~~~~~~~~~~------~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~ 275 (643)
++.++++++. +++.+.|+.+.+||....+........ ......+.+..++. ++..+.++.+.+|+.......
T Consensus 169 ~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 247 (373)
T d2madh_ 169 CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGAT 247 (373)
T ss_pred EEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCEEEEEEECCCCE-EEEECCCCEEEEEECCCCEEE
T ss_conf 6999628991999994799399997477426678863003667530434588789942-999258965999976899078
Q ss_pred E--EEECCCC----------CEEEEEEECC---------CCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 7--9506888----------8379999069---------99899999689959999779996508980335866489999
Q 006497 276 E--SFRGHRK----------DVTALAWHPF---------HEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 334 (643)
Q Consensus 276 ~--~~~~~~~----------~I~~i~~sp~---------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 334 (643)
. .+..... ....++++++ .+..+++...++.+.+||..+.+....+. +...+.+++|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~ 325 (373)
T d2madh_ 248 NKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISV 325 (373)
T ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEEEC--CCCCEEEEEE
T ss_conf 97763056475786641367413357714997599954888247862589869999899996989866--8998258999
Q ss_pred CCCCCE--EEEEECCCEEEEEECCCCCC
Q ss_conf 399999--99997899399993579999
Q 006497 335 HPIGYL--LCSGSNDHTTKFWCRNRPGD 360 (643)
Q Consensus 335 s~d~~~--L~sgs~Dg~I~iWd~~~~~~ 360 (643)
++|++. +++++.|+.|++||+...+.
T Consensus 326 spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 326 AQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCCEEEEEEECCCCEEEEEECCCCCE
T ss_conf 9899989999967999299999999989
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=6.5e-17 Score=135.52 Aligned_cols=274 Identities=10% Similarity=0.072 Sum_probs=189.2
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEE---ECCCCCCE
Q ss_conf 8999978990999909998338987--03798889999917999899995-999499997799805785---34888885
Q 006497 86 RLITGSQSGEFTLWNGQSFNFEMIL--QAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKAN---KSAHKESV 159 (643)
Q Consensus 86 ~L~tgs~dg~I~iwd~~~~~~~~~l--~~h~~~V~~i~~s~~~~~L~sg~-~dg~I~iwd~~~~~~~~~---~~~~~~~I 159 (643)
.++++..++.|++|++........+ ..+.+.+..++|++|+++|++++ .|+.|++|++........ .......+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 99987899938999983999769999975799886899958979999997789969999996898707985301369985
Q ss_pred EEEEEECCCCEEEEEEC-CCCEEEEECCCCEEEEEE--ECCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEEE
Q ss_conf 79999459998999949-991999977998245686--026988489999599998999978-99099998899931679
Q 006497 160 RDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL--TGHGWDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELCS 235 (643)
Q Consensus 160 ~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~--~~~~~~V~~i~~sp~~~~l~sg~~-dg~I~iwd~~s~~~~~~ 235 (643)
..++|++|+++|++++. ++.|.+|+.......... ..+...+.++.++++++++++++. +..|.+|+.........
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA 165 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEE
T ss_conf 49999599988742056888302200111000000100377853149886301013102565542056897326874100
Q ss_pred ------ECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCE----EEEEEE------CCCCCEEEEEEECCCCCEE
Q ss_conf ------636898679999949999999997-99929999879986----777950------6888837999906999899
Q 006497 236 ------FHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMK----ELESFR------GHRKDVTALAWHPFHEEYF 298 (643)
Q Consensus 236 ------~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~----~~~~~~------~~~~~I~~i~~sp~~~~~l 298 (643)
..........++|++++.+++... ..+...+|+..... ...... ........+++++++..++
T Consensus 166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred EECEEEEEECCCCCCEEEEECCCEEEEEECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEE
T ss_conf 10001334038875279996020147862046672178851035552021002234306877655312689951567205
Q ss_pred EEEECCCCEEEEECCCCCCEEEEEC--CCCCCEEEEEECCCCCEEEEEE-CCCEEEEEECCCCC
Q ss_conf 9996899599997799965089803--3586648999939999999997-89939999357999
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIHN--VHDNTVWDLAWHPIGYLLCSGS-NDHTTKFWCRNRPG 359 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~d~~~L~sgs-~Dg~I~iWd~~~~~ 359 (643)
+++..++.+.+|++........... .....+++++|++|+++|++++ .++.|++|+++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~t 309 (333)
T d1ri6a_ 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 309 (333)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred EECCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 5045688278788739997899999967899762899907989999998899939999997999
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.79 E-value=9.5e-17 Score=134.30 Aligned_cols=277 Identities=8% Similarity=-0.008 Sum_probs=190.8
Q ss_pred CCCCHHHHHHHHEEEEEEECCCCCCCCCCCCCHHHHCCCCCEEEECCCCCCEEECEEEEEECCCCCCEEEEEECCCCCEE
Q ss_conf 44340456874324788632676731002390212038531476169998401007997506888776999993899989
Q 006497 8 RAVDYTSTVVRYMQIRMWQRDSRDRTVLQATPAAAIDMLPTVAYTDNPSTSFAAKFVHTSLNKNRCSINRVLWTPTGRRL 87 (643)
Q Consensus 8 r~~~~~~~~~~~~~ir~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~I~~i~~spdg~~L 87 (643)
..-+|..+.....++.+|++...+ .+.+....|...+.+++|++|++++
T Consensus 6 ~~~~~l~~~~~~~~v~v~D~~t~~-------------------------------~~~t~~~~~~~~p~~l~~spDG~~l 54 (346)
T d1jmxb_ 6 AGHEYMIVTNYPNNLHVVDVASDT-------------------------------VYKSCVMPDKFGPGTAMMAPDNRTA 54 (346)
T ss_dssp TTCEEEEEEETTTEEEEEETTTTE-------------------------------EEEEEECSSCCSSCEEEECTTSSEE
T ss_pred CCCCEEEEECCCCEEEEEECCCCC-------------------------------EEEEEECCCCCCCCEEEECCCCCEE
T ss_conf 999699998699979999999998-------------------------------9999994899970459997898999
Q ss_pred EEE-ECCCCEEEEECCCCCEEEEECCCCC------CEEEEEECCCCCEEEEEE------------CCCCEEEEECCCCCE
Q ss_conf 999-7899099990999833898703798------889999917999899995------------999499997799805
Q 006497 88 ITG-SQSGEFTLWNGQSFNFEMILQAHDH------AIRSMVWSHNDNWMVSGD------------DGGAIKYWQNNMNNV 148 (643)
Q Consensus 88 ~tg-s~dg~I~iwd~~~~~~~~~l~~h~~------~V~~i~~s~~~~~L~sg~------------~dg~I~iwd~~~~~~ 148 (643)
+++ ..++.|++||+.+++....+..... .+..++|++|+++++++. .+..+.+|+..+++.
T Consensus 55 ~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 55 YVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred EEEECCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCEEEEEECCCCEE
T ss_conf 99978999399996756713123103654345477417999905888899970577521565146762489985256326
Q ss_pred EEEECC--CCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCC---------------
Q ss_conf 785348--888857999945999899994999199997799824568602698848999959999---------------
Q 006497 149 KANKSA--HKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS--------------- 211 (643)
Q Consensus 149 ~~~~~~--~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~--------------- 211 (643)
...+.. ....+..+.++.++..++. +..+.+|++.+.+.+..+..+. ....+.+++++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (346)
T d1jmxb_ 135 AKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSML 210 (346)
T ss_dssp BCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred EEEEEEEECCCCEEEEEECCCCEEEEE---CCCCEEEECCCCCEEEEEECCC-CCCCEEEECCCCEEEEEECCCCCEEEE
T ss_conf 568873102474399995278789984---7962699806997899996489-866237712552899986499816765
Q ss_pred -----------EEEEEECCCCEEEEECCCCCEEEE-ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE
Q ss_conf -----------899997899099998899931679-63689867999994999999999799929999879986777950
Q 006497 212 -----------LLVSGGKDSLVKLWDAKSGRELCS-FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 212 -----------~l~sg~~dg~I~iwd~~s~~~~~~-~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~ 279 (643)
.++++..+..+.+||+.++..... +..+...+.++.+++++.+++... ++.|.+||..+++.+..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~ 289 (346)
T d1jmxb_ 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN 289 (346)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE
T ss_pred EEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEEC
T ss_conf 123111267325754047834999977788368787631566068889717997899942-9838999899993999974
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEE
Q ss_conf 6888837999906999899999689959999779996508980
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIH 322 (643)
Q Consensus 280 ~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 322 (643)
+...+.+++|++ +++++++++.|+.|++||.++.+.+..+.
T Consensus 290 -~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 290 -LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp -CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred -CCCCEEEEEECC-CCCEEEEEECCCCEEEEECCCCCEEEEEE
T ss_conf -999778999968-99999999489929999996587979998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.8e-14 Score=117.52 Aligned_cols=246 Identities=9% Similarity=0.129 Sum_probs=169.3
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEEEE---CCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC
Q ss_conf 688877699999389998999978-990999909998338987---037988899999179998999959-994999977
Q 006497 69 NKNRCSINRVLWTPTGRRLITGSQ-SGEFTLWNGQSFNFEMIL---QAHDHAIRSMVWSHNDNWMVSGDD-GGAIKYWQN 143 (643)
Q Consensus 69 ~~h~~~I~~i~~spdg~~L~tgs~-dg~I~iwd~~~~~~~~~l---~~h~~~V~~i~~s~~~~~L~sg~~-dg~I~iwd~ 143 (643)
..|.+.|..++|+|||++|++++. |+.|++|++........+ ......+..++|++|+++|++++. ++.|.+|+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ECCCCCEEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECC
T ss_conf 75799886899958979999997789969999996898707985301369985499995999887420568883022001
Q ss_pred CCCCEEEE--ECCCCCCEEEEEEECCCCEEEEEEC-CCCEEEEECCCCEEEEEE------ECCCCCEEEEEECCCCCEEE
Q ss_conf 99805785--3488888579999459998999949-991999977998245686------02698848999959999899
Q 006497 144 NMNNVKAN--KSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSL------TGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 144 ~~~~~~~~--~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~------~~~~~~V~~i~~sp~~~~l~ 214 (643)
........ ...+...+.++.++++++++++++. +..|.+|+.......... .........++|++++..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~ 192 (333)
T d1ri6a_ 113 EDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAY 192 (333)
T ss_dssp ETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEE
T ss_pred CCCCCEECCCCCCCCCCCEEEEEEECCEEEECCCCCCCEEEEEEECCCCCCEEEECEEEEEECCCCCCEEEEECCCEEEE
T ss_conf 11000000100377853149886301013102565542056897326874100100013340388752799960201478
Q ss_pred EEE-CCCCEEEEECCCCCE----EEEEC------CCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEE---EEE
Q ss_conf 997-899099998899931----67963------6898679999949999999997-99929999879986777---950
Q 006497 215 SGG-KDSLVKLWDAKSGRE----LCSFH------GHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELE---SFR 279 (643)
Q Consensus 215 sg~-~dg~I~iwd~~s~~~----~~~~~------~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~---~~~ 279 (643)
... ..+...+|+...... ...+. ........++++++++++++.. .++.+.+|++....... ...
T Consensus 193 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (333)
T d1ri6a_ 193 CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ 272 (333)
T ss_dssp EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred EECCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 62046672178851035552021002234306877655312689951567205504568827878873999789999996
Q ss_pred CCCCCEEEEEEECCCCCEEEEEE-CCCCEEEEECCCC
Q ss_conf 68888379999069998999996-8995999977999
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGS-LDGSIFHWLVGHE 315 (643)
Q Consensus 280 ~~~~~I~~i~~sp~~~~~l~sgs-~dg~I~iwd~~~~ 315 (643)
.....+..++|+| ++++|++++ .++.|.+|+++..
T Consensus 273 ~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~ 308 (333)
T d1ri6a_ 273 PTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGE 308 (333)
T ss_dssp ECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETT
T ss_pred CCCCCEEEEEEEC-CCCEEEEEECCCCEEEEEEEECC
T ss_conf 7899762899907-98999999889993999999799
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.78 E-value=1.1e-13 Score=111.69 Aligned_cols=261 Identities=8% Similarity=-0.052 Sum_probs=178.2
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEEC----------CCCEEEEECCCCCEEEEECCCCCCE-------EEEEECCCCCEE
Q ss_conf 50688877699999389998999978----------9909999099983389870379888-------999991799989
Q 006497 67 SLNKNRCSINRVLWTPTGRRLITGSQ----------SGEFTLWNGQSFNFEMILQAHDHAI-------RSMVWSHNDNWM 129 (643)
Q Consensus 67 ~l~~h~~~I~~i~~spdg~~L~tgs~----------dg~I~iwd~~~~~~~~~l~~h~~~V-------~~i~~s~~~~~L 129 (643)
.+..+.. ..++|++||++|+++.. ++.|.+||..+++....+..+.... ..+.|+++++.+
T Consensus 62 ~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 139 (373)
T d2madh_ 62 HVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL 139 (373)
T ss_pred EEECCCC--CCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCEEEECCCCCCEEEEECCCCE
T ss_conf 9957988--60798689998999960577532124531899997778938889726885136851689708998589937
Q ss_pred EEEE--CCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCE-EEEEECCCCEEEEECCCCEEEEEEECCC------CC
Q ss_conf 9995--9994999977998057853488888579999459998-9999499919999779982456860269------88
Q 006497 130 VSGD--DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLK-FCSCSDDTTVKVWDFARCQEERSLTGHG------WD 200 (643)
Q Consensus 130 ~sg~--~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~-l~s~s~dg~I~iwdl~~~~~~~~~~~~~------~~ 200 (643)
++.. .++.+.+|+....+..... ....++.++++++. +++.+.|+.+.+|+.............. ..
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (373)
T d2madh_ 140 LFFQFAAGPAVGLVVQGGSSDDQLL----SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLL 215 (373)
T ss_pred EEEEECCCCCEEEEECCCCEEEEEE----CCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEEEEECCCCCCCCE
T ss_conf 9999869874677623687289982----452069996289919999947993999974774266788630036675304
Q ss_pred EEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE--ECCCC----------CCEEEEEECCCCCEE----------EEE
Q ss_conf 48999959999899997899099998899931679--63689----------867999994999999----------999
Q 006497 201 VKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCS--FHGHK----------NMVLCVKWNQNGNWV----------LTA 258 (643)
Q Consensus 201 V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~--~~~~~----------~~i~~i~~sp~g~~l----------~s~ 258 (643)
...+.+..++ .++....++.+.+|+..+...... +.... .....+.+++++..+ +..
T Consensus 216 ~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 294 (373)
T d2madh_ 216 TQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLH 294 (373)
T ss_pred EEEEEECCCC-EEEEECCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 3458878994-299925896599997689907897763056475786641367413357714997599954888247862
Q ss_pred ECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECC
Q ss_conf 79992999987998677795068888379999069998--9999968995999977999650898033586648999939
Q 006497 259 SKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEE--YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 259 s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 336 (643)
..++.+.+||..+++.+..+. +...+..++|++ +++ ++++++.|+.|++||+.+.+....+. .+....+.+++..
T Consensus 295 ~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~-~~g~~P~~l~~~~ 371 (373)
T d2madh_ 295 AAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTV-ELGSGPQVLSVMN 371 (373)
T ss_pred CCCCEEEEEECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEC-CCCCCCCEEEEEC
T ss_conf 589869999899996989866-899825899998-9998999996799929999999998999988-8898981899846
Q ss_pred C
Q ss_conf 9
Q 006497 337 I 337 (643)
Q Consensus 337 d 337 (643)
+
T Consensus 372 ~ 372 (373)
T d2madh_ 372 E 372 (373)
T ss_pred C
T ss_conf 8
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=3.4e-16 Score=130.24 Aligned_cols=277 Identities=8% Similarity=-0.043 Sum_probs=183.4
Q ss_pred EEEEEECCCCCEEEEEE-----CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CCCCEE
Q ss_conf 69999938999899997-----899099990999833898703798889999917999899995----------999499
Q 006497 75 INRVLWTPTGRRLITGS-----QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DGGAIK 139 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs-----~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~----------~dg~I~ 139 (643)
+.-.+.++|++.+++.. .+..|.+||..+++.+.++..+... .++|++|+++|++.+ .|+.|+
T Consensus 4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~ 81 (355)
T d2bbkh_ 4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE 81 (355)
T ss_dssp CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCCCC--CEEECCCCCEEEEEECCCCCCCCCCCCCEEE
T ss_conf 17476589999999982664777671999999999499999899998--5699489999999967776420158999899
Q ss_pred EEECCCCCEEEEECCCC-------CCEEEEEEECCCCEEEEEE--CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCC
Q ss_conf 99779980578534888-------8857999945999899994--99919999779982456860269884899995999
Q 006497 140 YWQNNMNNVKANKSAHK-------ESVRDLSFCRTDLKFCSCS--DDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK 210 (643)
Q Consensus 140 iwd~~~~~~~~~~~~~~-------~~I~~l~~s~d~~~l~s~s--~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~ 210 (643)
+||..+++....+..+. .....++|+++++.++++. .+..+.+|+..+.+.+..+....... ... ...
T Consensus 82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~ 158 (355)
T d2bbkh_ 82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYH-IFP--TAP 158 (355)
T ss_dssp EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEE-EEE--EET
T ss_pred EEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCCE-EEE--CCC
T ss_conf 99999997988980588640311798734999338871577327988204543057883766770587404-730--699
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEE------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEE--EEEECCC
Q ss_conf 98999978990999988999316796------368986799999499999999979992999987998677--7950688
Q 006497 211 SLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKEL--ESFRGHR 282 (643)
Q Consensus 211 ~~l~sg~~dg~I~iwd~~s~~~~~~~------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~ 282 (643)
...+..+.|+...++.......+..+ ..+...+....+..++..++.++.++.+++|++...+.. .....+.
T Consensus 159 ~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 238 (355)
T d2bbkh_ 159 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 238 (355)
T ss_dssp TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred CCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCCCC
T ss_conf 63699938999899983478737999624333000110610215389973887469982999965899079984457844
Q ss_pred ----------CCEEEEEEECCCCCEEEEEECC----------CCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC--E
Q ss_conf ----------8837999906999899999689----------95999977999650898033586648999939999--9
Q 006497 283 ----------KDVTALAWHPFHEEYFVSGSLD----------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY--L 340 (643)
Q Consensus 283 ----------~~I~~i~~sp~~~~~l~sgs~d----------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~--~ 340 (643)
.....+++++ ++..++....+ ..|.+||..+.+....+.. ...+.+++|++|++ +
T Consensus 239 ~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~--~~~~~~~a~spDG~~~l 315 (355)
T d2bbkh_ 239 EAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM--GHEIDSINVSQDEKPLL 315 (355)
T ss_dssp HHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEE
T ss_pred CCEEEEEEECCCEEEEEEEC-CCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECC--CCCEEEEEECCCCCEEE
T ss_conf 12685433035108999807-9976788740687126517997599986788849899668--99877999928999699
Q ss_pred EEEEECCCEEEEEECCCCC
Q ss_conf 9999789939999357999
Q 006497 341 LCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 341 L~sgs~Dg~I~iWd~~~~~ 359 (643)
+++++.|+.|++||+...+
T Consensus 316 ~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 316 YALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEEECCCCEEEEEECCCCC
T ss_conf 9997899989999999998
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=4.4e-14 Score=114.64 Aligned_cols=255 Identities=8% Similarity=0.023 Sum_probs=167.5
Q ss_pred EEEEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCCCCEEEEEE--CC
Q ss_conf 69999938999899997----------899099990999833898703798-------889999917999899995--99
Q 006497 75 INRVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD--DG 135 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~l~~h~~-------~V~~i~~s~~~~~L~sg~--~d 135 (643)
+..++|++|+++|++.+ .++.|++||..+++....+..+.. ....++|++++++++++. .+
T Consensus 49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~ 128 (355)
T d2bbkh_ 49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA 128 (355)
T ss_dssp SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred CCCEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEECCCCCCEEEEECCCCEEEEECCCCC
T ss_conf 98569948999999996777642015899989999999997988980588640311798734999338871577327988
Q ss_pred CCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEE------CCCCCEEEEEECCC
Q ss_conf 949999779980578534888885799994599989999499919999779982456860------26988489999599
Q 006497 136 GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDWHPT 209 (643)
Q Consensus 136 g~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~------~~~~~V~~i~~sp~ 209 (643)
..+.+|+..+.+....+....... .+.......+..+.|+...++..........+. .+...+....+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (355)
T d2bbkh_ 129 PAVGVVDLEGKAFKRMLDVPDCYH---IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK 205 (355)
T ss_dssp CEEEEEETTTTEEEEEEECCSEEE---EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT
T ss_pred CEEEEEECCCCCEEEEEECCCCCE---EEECCCCCEEEECCCCCEEEEEECCCCEEEEEECCCCCCEECCEEEECCCCCC
T ss_conf 204543057883766770587404---73069963699938999899983478737999624333000110610215389
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEE--ECCC----------CCCEEEEEECCCCCEEEEEECC----------CCEEEE
Q ss_conf 99899997899099998899931679--6368----------9867999994999999999799----------929999
Q 006497 210 KSLLVSGGKDSLVKLWDAKSGRELCS--FHGH----------KNMVLCVKWNQNGNWVLTASKD----------QIIKLY 267 (643)
Q Consensus 210 ~~~l~sg~~dg~I~iwd~~s~~~~~~--~~~~----------~~~i~~i~~sp~g~~l~s~s~d----------g~I~iw 267 (643)
+..++.++.++.+++|++..++.... ...+ ......+++++++..++....+ ..|.+|
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~ 285 (355)
T d2bbkh_ 206 AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVL 285 (355)
T ss_dssp TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEE
T ss_conf 97388746998299996589907998445784412685433035108999807997678874068712651799759998
Q ss_pred ECCCCEEEEEEECCCCCEEEEEEECCCCC--EEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEEC
Q ss_conf 87998677795068888379999069998--999996899599997799965089803358664899993
Q 006497 268 DIRAMKELESFRGHRKDVTALAWHPFHEE--YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH 335 (643)
Q Consensus 268 d~~~~~~~~~~~~~~~~I~~i~~sp~~~~--~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 335 (643)
|..+++.+..+. ....+.+++|++ +++ +++++..|+.|++||..+.+.+..+. .+...-..+.+.
T Consensus 286 d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~-~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 286 DAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVN-QLGHGPQVITTA 352 (355)
T ss_dssp ETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEEC-CCCSSCCEEECC
T ss_pred ECCCCCEEEEEC-CCCCEEEEEECC-CCCEEEEEEECCCCEEEEEECCCCCEEEEEE-CCCCCCCEEEEC
T ss_conf 678884989966-899877999928-9996999997899989999999998999992-869796589969
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.64 E-value=4.2e-13 Score=107.44 Aligned_cols=289 Identities=9% Similarity=0.035 Sum_probs=162.9
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC
Q ss_conf 750688877699999389998999978---------99099990999833898703798889999917999899995999
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG 136 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~---------dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg 136 (643)
..+..|...|.++.||||+++|+.++. ++.+.|||+.+++ ...+..+...+..+.|+||+++||... +.
T Consensus 55 ~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~ 132 (470)
T d2bgra1 55 STFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NN 132 (470)
T ss_dssp TTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred HHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCCCEEEEEE-CC
T ss_conf 5644316765405998988979999777100010467349999898885-131246874231010146764135751-46
Q ss_pred CEEEEECCCCCEEEEECCC------------------CCCEEEEEEECCCCEEEEEECCCC-EEEEEC------------
Q ss_conf 4999977998057853488------------------888579999459998999949991-999977------------
Q 006497 137 AIKYWQNNMNNVKANKSAH------------------KESVRDLSFCRTDLKFCSCSDDTT-VKVWDF------------ 185 (643)
Q Consensus 137 ~I~iwd~~~~~~~~~~~~~------------------~~~I~~l~~s~d~~~l~s~s~dg~-I~iwdl------------ 185 (643)
.+.+|+..+++........ ......+.|+||+++|+....|.+ +..|++
T Consensus 133 ~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~ 212 (470)
T d2bgra1 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPK 212 (470)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCE
T ss_pred CCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCE
T ss_conf 41379889994653210147774053543201121004776530799998722026863776706998766047778871
Q ss_pred -----------------------CCCEEEEEEE-----------CCCCCEEEEEECCCCCEEEEEE-CCC-----CEEEE
Q ss_conf -----------------------9982456860-----------2698848999959999899997-899-----09999
Q 006497 186 -----------------------ARCQEERSLT-----------GHGWDVKSVDWHPTKSLLVSGG-KDS-----LVKLW 225 (643)
Q Consensus 186 -----------------------~~~~~~~~~~-----------~~~~~V~~i~~sp~~~~l~sg~-~dg-----~I~iw 225 (643)
.......... .....+..+.|..++.+++... ..+ .+..+
T Consensus 213 ~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~ 292 (470)
T d2bgra1 213 TVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY 292 (470)
T ss_dssp EEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred EEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEE
T ss_conf 35403665454688625799998886145520332247863347898667788876878334787304688159999996
Q ss_pred ECCCCCEEEEEC------CCCCC-----EEEEEECCCC--CEEEEEECCCCEEEE--ECCCCEEEEEEECCCCCEEEEEE
Q ss_conf 889993167963------68986-----7999994999--999999799929999--87998677795068888379999
Q 006497 226 DAKSGRELCSFH------GHKNM-----VLCVKWNQNG--NWVLTASKDQIIKLY--DIRAMKELESFRGHRKDVTALAW 290 (643)
Q Consensus 226 d~~s~~~~~~~~------~~~~~-----i~~i~~sp~g--~~l~s~s~dg~I~iw--d~~~~~~~~~~~~~~~~I~~i~~ 290 (643)
|..++....... ..... .....+..++ .+++....|+...|| +.. +.....+......|..+..
T Consensus 293 d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~-g~~~~~lt~g~~~v~~~~~ 371 (470)
T d2bgra1 293 DESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQID-KKDCTFITKGTWEVIGIEA 371 (470)
T ss_dssp ETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETT-CSCCEESCCSSSCEEEEEE
T ss_pred CCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEEEEECCCCCCEEEEEECC-CCCEEEECCCCEEEEEEEE
T ss_conf 188894789998751466214335313577724542378847987436757645999526-8730451169804878789
Q ss_pred ECCCCCEEEEEECCC----CEEEE--ECCCCCCEEEE---ECCCCCCEEEEEECCCCCEEEEE---ECCCEEEEEECCCC
Q ss_conf 069998999996899----59999--77999650898---03358664899993999999999---78993999935799
Q 006497 291 HPFHEEYFVSGSLDG----SIFHW--LVGHETPQVEI---HNVHDNTVWDLAWHPIGYLLCSG---SNDHTTKFWCRNRP 358 (643)
Q Consensus 291 sp~~~~~l~sgs~dg----~I~iw--d~~~~~~~~~~---~~~h~~~V~~l~~s~d~~~L~sg---s~Dg~I~iWd~~~~ 358 (643)
.. ++.++++++.++ .-.+| ++........+ ...|...+.+++||+|+++++.. ...-.+.+|+....
T Consensus 372 ~d-~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g 450 (470)
T d2bgra1 372 LT-SDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVND 450 (470)
T ss_dssp EC-SSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTT
T ss_pred EC-CCEEEEEEECCCCCCCEEEEEEEECCCCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCC
T ss_conf 77-99999999568998351799999888998605703543588898799999989999999832899981999998999
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=4.1e-13 Score=107.54 Aligned_cols=279 Identities=8% Similarity=-0.101 Sum_probs=178.8
Q ss_pred CCCCEEEEEECCCCCEEEEE---ECC--CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE----------CC
Q ss_conf 88776999993899989999---789--9099990999833898703798889999917999899995----------99
Q 006497 71 NRCSINRVLWTPTGRRLITG---SQS--GEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD----------DG 135 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tg---s~d--g~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~----------~d 135 (643)
+.+....++..++++..... ..+ ..|.+||..+++.+..+..+... .++|++|++.|++.+ .|
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCCC--CCEECCCCCEEEEECCCCCCCCCCCCC
T ss_conf 679866645589876126972045788621799708998377888578777--513989998899975567640103567
Q ss_pred CCEEEEECCCCCEEEEECCCC-------CCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCEEEEEEECCCCCEEEEEEC
Q ss_conf 949999779980578534888-------8857999945999899994-99919999779982456860269884899995
Q 006497 136 GAIKYWQNNMNNVKANKSAHK-------ESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQEERSLTGHGWDVKSVDWH 207 (643)
Q Consensus 136 g~I~iwd~~~~~~~~~~~~~~-------~~I~~l~~s~d~~~l~s~s-~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~s 207 (643)
+.|.+||..+.+....+..+. .....++|++|+++++++. .++.+.+||+.+.+....+..+...... .
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~---~ 172 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH---P 172 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCE---E
T ss_pred CEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEEEEEECCCCCEEEEEECCCCCEEC---C
T ss_conf 8699998999938306437854210246886405887899899999689985999989989386786046752374---6
Q ss_pred CCCCEEEEEECCCCEEEEECCCCCEEEEE------CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE--
Q ss_conf 99998999978990999988999316796------3689867999994999999999799929999879986777950--
Q 006497 208 PTKSLLVSGGKDSLVKLWDAKSGRELCSF------HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR-- 279 (643)
Q Consensus 208 p~~~~l~sg~~dg~I~iwd~~s~~~~~~~------~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~-- 279 (643)
.....++..+.||.+.+|++......... ..+...+..+.+..++..++.. ++.+.+++...........
T Consensus 173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~ 250 (368)
T d1mdah_ 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAID 250 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCC
T ss_pred CCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCEEEEEECC
T ss_conf 998239999489988999826896266653031113566646601015586899934--897799960699369976024
Q ss_pred CCC----------CCEEEEEEECCCCCEEEEE-ECC--------CCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC-
Q ss_conf 688----------8837999906999899999-689--------95999977999650898033586648999939999-
Q 006497 280 GHR----------KDVTALAWHPFHEEYFVSG-SLD--------GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY- 339 (643)
Q Consensus 280 ~~~----------~~I~~i~~sp~~~~~l~sg-s~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~- 339 (643)
... .....+++++ ++..++.. ..+ ..|.+||..+.+....+. +...+.+++|++|++
T Consensus 251 ~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~ 327 (368)
T d1mdah_ 251 GNESGRKADNFRSAGFQMVAKLK-NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGAS 327 (368)
T ss_dssp SSCTHHHHTTEEECSSSCEEEET-TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSC
T ss_pred CCCCEEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEEC--CCCCEEEEEECCCCCE
T ss_conf 65430455401278835688717-99879998358973340588649999899994868955--8996517999989998
Q ss_pred E-EEEEECCCEEEEEECCCCC
Q ss_conf 9-9999789939999357999
Q 006497 340 L-LCSGSNDHTTKFWCRNRPG 359 (643)
Q Consensus 340 ~-L~sgs~Dg~I~iWd~~~~~ 359 (643)
+ +++...|+.|++||....+
T Consensus 328 ~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 328 DNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEEEETTTTEEEEEESSSCE
T ss_pred EEEEEECCCCEEEEEECCCCC
T ss_conf 999994899969999899997
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.59 E-value=3.4e-12 Score=100.69 Aligned_cols=279 Identities=11% Similarity=0.047 Sum_probs=163.5
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC-----CCCEEEEEECCCCCEEEEEEC---------CCCEEEE
Q ss_conf 99999389998999978990999909998338987037-----988899999179998999959---------9949999
Q 006497 76 NRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH-----DHAIRSMVWSHNDNWMVSGDD---------GGAIKYW 141 (643)
Q Consensus 76 ~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~i~~s~~~~~L~sg~~---------dg~I~iw 141 (643)
..+.|.+|+.++.. .++.+.+||..+++....+..+ ...|.++.|++|+++|+.++. ++.+.+|
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCCEECCCCEEEEE--CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEECCCCCEEEEEECCCCEEEECCCCEEEEE
T ss_conf 57896899979997--5994999988999789997015644316765405998988979999777100010467349999
Q ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECC------------------CCCEEE
Q ss_conf 77998057853488888579999459998999949991999977998245686026------------------988489
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH------------------GWDVKS 203 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~------------------~~~V~~ 203 (643)
|+.+++.. .+..+...+....|++|++.|+... ++.+++|+...++........ ......
T Consensus 98 d~~~~~~~-~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~ 175 (470)
T d2bgra1 98 DLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA 175 (470)
T ss_dssp ETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred ECCCCCCC-CCCCCCCCCCCCCCCCCCCEEEEEE-CCCCEEEECCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 89888513-1246874231010146764135751-464137988999465321014777405354320112100477653
Q ss_pred EEECCCCCEEEEEECCCC-EEEEEC-----------------------------------CCCCEEEEE-----------
Q ss_conf 999599998999978990-999988-----------------------------------999316796-----------
Q 006497 204 VDWHPTKSLLVSGGKDSL-VKLWDA-----------------------------------KSGRELCSF----------- 236 (643)
Q Consensus 204 i~~sp~~~~l~sg~~dg~-I~iwd~-----------------------------------~s~~~~~~~----------- 236 (643)
+.|+||++.|+....|.. +..|++ ..++.....
T Consensus 176 ~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 255 (470)
T d2bgra1 176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM 255 (470)
T ss_dssp EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHH
T ss_pred CEECCCCCCCCEEEECCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCC
T ss_conf 07999987220268637767069987660477788713540366545468862579999888614552033224786334
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCC-----CEEEEECCCCEEEEEEE------CCCCC-----EEEEEEECCCCC-EE
Q ss_conf 36898679999949999999997-999-----29999879986777950------68888-----379999069998-99
Q 006497 237 HGHKNMVLCVKWNQNGNWVLTAS-KDQ-----IIKLYDIRAMKELESFR------GHRKD-----VTALAWHPFHEE-YF 298 (643)
Q Consensus 237 ~~~~~~i~~i~~sp~g~~l~s~s-~dg-----~I~iwd~~~~~~~~~~~------~~~~~-----I~~i~~sp~~~~-~l 298 (643)
......+..+.|..++..++... ..+ .+..+|..++....... ..... -....+...... ++
T Consensus 256 ~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (470)
T d2bgra1 256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYK 335 (470)
T ss_dssp HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEE
T ss_pred CCCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEEEECCCEEECCCCCCCEEEECCCCCEE
T ss_conf 78986677888768783347873046881599999961888947899987514662143353135777245423788479
Q ss_pred EEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEE-EEEECCC----EEEEEECCCCC
Q ss_conf 9996899599997799965089803358664899993999999-9997899----39999357999
Q 006497 299 VSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLL-CSGSNDH----TTKFWCRNRPG 359 (643)
Q Consensus 299 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L-~sgs~Dg----~I~iWd~~~~~ 359 (643)
+....||...+|.+.........+......|..+. +.+++.+ +++..++ .-.||.++-.+
T Consensus 336 ~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~~~~-~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g 400 (470)
T d2bgra1 336 IISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLSD 400 (470)
T ss_dssp EEECTTSCEEEEEEETTCSCCEESCCSSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTC
T ss_pred EEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEE-EECCCEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf 87436757645999526873045116980487878-977999999995689983517999998889
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=8.5e-13 Score=105.17 Aligned_cols=250 Identities=7% Similarity=-0.052 Sum_probs=165.4
Q ss_pred EEEECCCCCEEEEEE----------CCCCEEEEECCCCCEEEEECCCCC-------CEEEEEECCCCCEEEEEE-CCCCE
Q ss_conf 999938999899997----------899099990999833898703798-------889999917999899995-99949
Q 006497 77 RVLWTPTGRRLITGS----------QSGEFTLWNGQSFNFEMILQAHDH-------AIRSMVWSHNDNWMVSGD-DGGAI 138 (643)
Q Consensus 77 ~i~~spdg~~L~tgs----------~dg~I~iwd~~~~~~~~~l~~h~~-------~V~~i~~s~~~~~L~sg~-~dg~I 138 (643)
.++|++|++.|++.+ .|+.|.+||..+++....+..+.. ....++|++|+++|+++. .++.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v 148 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred CCEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCEECCCCCCCCEEECCCCCEEEEEECCCCEE
T ss_conf 51398999889997556764010356786999989999383064378542102468864058878998999996899859
Q ss_pred EEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEE------CCCCCEEEEEECCCCCE
Q ss_conf 999779980578534888885799994599989999499919999779982456860------26988489999599998
Q 006497 139 KYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT------GHGWDVKSVDWHPTKSL 212 (643)
Q Consensus 139 ~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~------~~~~~V~~i~~sp~~~~ 212 (643)
.+||+.+.+....+..+..... +......++..+.|+.+.+|++.......... .+...+....+.+++..
T Consensus 149 ~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 225 (368)
T d1mdah_ 149 AGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEECCCCCEEEEEECCCCCEE---CCCCCCEEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEECCCCCCCEE
T ss_conf 9998998938678604675237---4699823999948998899982689626665303111356664660101558689
Q ss_pred EEEEECCCCEEEEECCCCCEEEEEC--CC----------CCCEEEEEECCCCCEEEEEECC---------CCEEEEECCC
Q ss_conf 9999789909999889993167963--68----------9867999994999999999799---------9299998799
Q 006497 213 LVSGGKDSLVKLWDAKSGRELCSFH--GH----------KNMVLCVKWNQNGNWVLTASKD---------QIIKLYDIRA 271 (643)
Q Consensus 213 l~sg~~dg~I~iwd~~s~~~~~~~~--~~----------~~~i~~i~~sp~g~~l~s~s~d---------g~I~iwd~~~ 271 (643)
+.. .++.+++++........... .. ......+++++++..+++...+ ..|.+||..+
T Consensus 226 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t 303 (368)
T d1mdah_ 226 VWA--VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV 303 (368)
T ss_dssp EEC--BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS
T ss_pred EEE--CCCCEEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCC
T ss_conf 993--489779996069936997602465430455401278835688717998799983589733405886499998999
Q ss_pred CEEEEEEECCCCCEEEEEEECCCCC-EEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEE
Q ss_conf 8677795068888379999069998-99999689959999779996508980335866489999
Q 006497 272 MKELESFRGHRKDVTALAWHPFHEE-YFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAW 334 (643)
Q Consensus 272 ~~~~~~~~~~~~~I~~i~~sp~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 334 (643)
++.+..+. ....+..++|++++.. +++++..++.|++||..+++.+..+... ..-+.|.+
T Consensus 304 ~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g--~~P~~l~~ 364 (368)
T d1mdah_ 304 GQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSV 364 (368)
T ss_dssp CCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEEC
T ss_pred CCEEEEEC-CCCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECC--CCCCEEEE
T ss_conf 94868955-899651799998999899999489996999989999799998799--99878997
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.53 E-value=1.6e-11 Score=95.77 Aligned_cols=282 Identities=7% Similarity=-0.016 Sum_probs=177.5
Q ss_pred CCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEECCCCC--EEEEEECCC--------
Q ss_conf 68887769999938999899997-899099990999833898703-798889999917999--899995999--------
Q 006497 69 NKNRCSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQA-HDHAIRSMVWSHNDN--WMVSGDDGG-------- 136 (643)
Q Consensus 69 ~~h~~~I~~i~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~l~~-h~~~V~~i~~s~~~~--~L~sg~~dg-------- 136 (643)
..|.-.+....+++||++|++.. .+..|.++|+++++...++.. ....+..++|+++++ +++..+.+.
T Consensus 68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~ 147 (441)
T d1qnia2 68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT 147 (441)
T ss_dssp CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred CCCCCCCCEECCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCC
T ss_conf 55677722103268888899973899979999887784755795678878643487056998999956677544367663
Q ss_pred ---------CEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCC-CEEEEECCCCEEEEEEECCCCCEEEEEE
Q ss_conf ---------499997799805785348888857999945999899994999-1999977998245686026988489999
Q 006497 137 ---------AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDT-TVKVWDFARCQEERSLTGHGWDVKSVDW 206 (643)
Q Consensus 137 ---------~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg-~I~iwdl~~~~~~~~~~~~~~~V~~i~~ 206 (643)
.+..+|..+.+....+.. ......+.++++++++++.+.+. .+..++..+......+.... .-..+++
T Consensus 148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~p~~~~~ 225 (441)
T d1qnia2 148 DFSLDNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-VERIAAA 225 (441)
T ss_dssp CCCGGGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-HHHHHHH
T ss_pred CCCCCCCCCEEEEECCCCCEEEEEEEC-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC-CCCEEEE
T ss_conf 001455532388663755606478736-99865469879999899985178731898515712178999688-5110799
Q ss_pred CCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEE-EECCCCEEEEECCCCEEE----------
Q ss_conf 599998999978990999988999316796368986799999499999999-979992999987998677----------
Q 006497 207 HPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLT-ASKDQIIKLYDIRAMKEL---------- 275 (643)
Q Consensus 207 sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s-~s~dg~I~iwd~~~~~~~---------- 275 (643)
.++++++.++ .++.+.+++....+.+..+...+ ....+.+++||+++++ +..+++|.+||+.+.+..
T Consensus 226 ~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~ 303 (441)
T d1qnia2 226 VKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDT 303 (441)
T ss_dssp HHTTCCBCCT-TCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGG
T ss_pred ECCCCEEEEC-CCCCEEEECCCCCCEEEEEECCC-CCCCCEECCCCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEE
T ss_conf 6699999969-99828998036870689971798-866726899987899907759938999832244575256884247
Q ss_pred -EEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCC---------CCCEEEEE-----CCCCCCEEEEEECCCCCE
Q ss_conf -795068888379999069998999996899599997799---------96508980-----335866489999399999
Q 006497 276 -ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGH---------ETPQVEIH-----NVHDNTVWDLAWHPIGYL 340 (643)
Q Consensus 276 -~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~---------~~~~~~~~-----~~h~~~V~~l~~s~d~~~ 340 (643)
.......-.....+|++ +++.+.+...|..|..|++.. ........ .+|...+.+.++++||++
T Consensus 304 ~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~ 382 (441)
T d1qnia2 304 IVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKW 382 (441)
T ss_dssp EEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCE
T ss_pred EEEECCCCCCCCCCEECC-CCEEEECCCCCCEEEEECCCHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 996014554766522657-8559985244316897235422133226777656864532668987752454223898848
Q ss_pred EEEEECCCEEEEEEC
Q ss_conf 999978993999935
Q 006497 341 LCSGSNDHTTKFWCR 355 (643)
Q Consensus 341 L~sgs~Dg~I~iWd~ 355 (643)
|++++.-..=|++.+
T Consensus 383 l~s~~k~s~dr~~~~ 397 (441)
T d1qnia2 383 LVVLSKFSKDRFLPV 397 (441)
T ss_dssp EEEEESCCGGGSCCC
T ss_pred EEECCCCCCCCCCCC
T ss_conf 996574442557678
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.37 E-value=2.5e-08 Score=72.21 Aligned_cols=258 Identities=12% Similarity=0.129 Sum_probs=134.8
Q ss_pred CEEEEEECCCCCEEEEEEC-------CCCEEEEECCCCCEEEEECCC----CCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 7699999389998999978-------990999909998338987037----98889999917999899995999499997
Q 006497 74 SINRVLWTPTGRRLITGSQ-------SGEFTLWNGQSFNFEMILQAH----DHAIRSMVWSHNDNWMVSGDDGGAIKYWQ 142 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~-------dg~I~iwd~~~~~~~~~l~~h----~~~V~~i~~s~~~~~L~sg~~dg~I~iwd 142 (643)
....++|.++|+++++... ++.|..||..+++........ ...-..+.|.++++.|+++.....|..++
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf 97173996999999998754023452999999989999599997776556788530699907999899997798399994
Q ss_pred CCCCCEEEEECCCCC----CEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 799805785348888----8579999459998999949991999977998245686026988489999599998999978
Q 006497 143 NNMNNVKANKSAHKE----SVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGK 218 (643)
Q Consensus 143 ~~~~~~~~~~~~~~~----~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~ 218 (643)
.+............. ..+++++.++++..++-. .+.+..|+... .. .. .
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~-~~~~~~~~~~~-----~~--~~-------------------~ 151 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTR-----SM--QE-------------------K 151 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCB-----TT--SS-------------------S
T ss_pred CCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECC-CCCCCCCCCCC-----EE--CC-------------------C
T ss_conf 7774799973343245457872789888998999148-66754320110-----00--26-------------------8
Q ss_pred CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCC----EEEE-EECCCCEEEEECCCCEEEE------EEEC-CCCCEE
Q ss_conf 99099998899931679636898679999949999----9999-9799929999879986777------9506-888837
Q 006497 219 DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGN----WVLT-ASKDQIIKLYDIRAMKELE------SFRG-HRKDVT 286 (643)
Q Consensus 219 dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~----~l~s-~s~dg~I~iwd~~~~~~~~------~~~~-~~~~I~ 286 (643)
++.|+.++.+ ++...... .-...+.++|+++++ +|++ -+..+.|..||+.....+. .+.. ......
T Consensus 152 ~G~v~~~~~d-g~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pd 229 (314)
T d1pjxa_ 152 FGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGAD 229 (314)
T ss_dssp CEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEE
T ss_pred CCEEEEEEEC-CCEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEEEECCCCCCCCEEEEEEECCCCCCCCCE
T ss_conf 8438999525-74037507-853221369978877630379998602431177611676543015689971335666410
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC-EEEEEECCCEEEEEECCCCCCCC
Q ss_conf 99990699989999968995999977999650898033586648999939999-99999789939999357999953
Q 006497 287 ALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSGSNDHTTKFWCRNRPGDTA 362 (643)
Q Consensus 287 ~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~-~L~sgs~Dg~I~iWd~~~~~~~~ 362 (643)
.+++.. +++++++....+.|.+|+.+.......+.. .....++++|.+|++ ++++.+.++.|...++...+.+.
T Consensus 230 GiavD~-~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~-p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~~~ 304 (314)
T d1pjxa_ 230 GMDFDE-DNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGKKQ 304 (314)
T ss_dssp EEEEBT-TCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBCCC
T ss_pred EEEEEC-CCCEEEEECCCCEEEEEECCCCEEEEEEEC-CCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCHHH
T ss_conf 257834-785799982799999996999979999979-999878999928989999998789919999789999055
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.37 E-value=6.3e-10 Score=84.03 Aligned_cols=265 Identities=10% Similarity=0.030 Sum_probs=172.1
Q ss_pred EEEEECCCCEEEEECCCCCEEEEECC------------------------------CCCCEEEEEECCCCCEEEEEE-CC
Q ss_conf 99997899099990999833898703------------------------------798889999917999899995-99
Q 006497 87 LITGSQSGEFTLWNGQSFNFEMILQA------------------------------HDHAIRSMVWSHNDNWMVSGD-DG 135 (643)
Q Consensus 87 L~tgs~dg~I~iwd~~~~~~~~~l~~------------------------------h~~~V~~i~~s~~~~~L~sg~-~d 135 (643)
+++++.+|.|++|++.+++.++++.. |.-.......++||++|++.. .+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEECCCCCCEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCEECCCCCCCEEEEECCCC
T ss_conf 99688777489996789807999976757898799988865047831332256755677722103268888899973899
Q ss_pred CCEEEEECCCCCEEEEEC-CCCCCEEEEEEECCCCE--EEEEECCC-----------------CEEEEECCCCEEEEEEE
Q ss_conf 949999779980578534-88888579999459998--99994999-----------------19999779982456860
Q 006497 136 GAIKYWQNNMNNVKANKS-AHKESVRDLSFCRTDLK--FCSCSDDT-----------------TVKVWDFARCQEERSLT 195 (643)
Q Consensus 136 g~I~iwd~~~~~~~~~~~-~~~~~I~~l~~s~d~~~--l~s~s~dg-----------------~I~iwdl~~~~~~~~~~ 195 (643)
.+|.++|+.+.+....+. .+...+..++|+++++. ++..+.+. .+..+|..+.+....+.
T Consensus 94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~ 173 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI 173 (441)
T ss_dssp TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEEE
T ss_conf 97999988778475579567887864348705699899995667754436766300145553238866375560647873
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCC-CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEE
Q ss_conf 2698848999959999899997899-099998899931679636898679999949999999997999299998799867
Q 006497 196 GHGWDVKSVDWHPTKSLLVSGGKDS-LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKE 274 (643)
Q Consensus 196 ~~~~~V~~i~~sp~~~~l~sg~~dg-~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~ 274 (643)
. ......+.++++++++++.+.+. .+..++..+.+....+... ..-..+.+.++++++.++ .++.+.+++....+.
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v 250 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEF 250 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSS
T ss_pred C-CCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCEEEEEEEC-CCCCEEEEECCCCEEEEC-CCCCEEEECCCCCCE
T ss_conf 6-9986546987999989998517873189851571217899968-851107996699999969-998289980368706
Q ss_pred EEEEECCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCC----------EEEEECCCCCCEEEEEECCCCCEEEE
Q ss_conf 77950688883799990699989-99996899599997799965----------08980335866489999399999999
Q 006497 275 LESFRGHRKDVTALAWHPFHEEY-FVSGSLDGSIFHWLVGHETP----------QVEIHNVHDNTVWDLAWHPIGYLLCS 343 (643)
Q Consensus 275 ~~~~~~~~~~I~~i~~sp~~~~~-l~sgs~dg~I~iwd~~~~~~----------~~~~~~~h~~~V~~l~~s~d~~~L~s 343 (643)
+..+... .....+.++| ++++ ++++..+++|.+||+++... .+.......-.....+|+.++..+.+
T Consensus 251 ~~~IPvg-ksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts 328 (441)
T d1qnia2 251 TRYIPVP-KNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT 328 (441)
T ss_dssp EEEECCB-SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE
T ss_pred EEEEECC-CCCCCCEECC-CCCEEEEECCCCCCEEEEEEEHHHHHHHCCCCCCEEEEEECCCCCCCCCCEECCCCEEEEC
T ss_conf 8997179-8866726899-9878999077599389998322445752568842479960145547665226578559985
Q ss_pred EECCCEEEEEECC
Q ss_conf 9789939999357
Q 006497 344 GSNDHTTKFWCRN 356 (643)
Q Consensus 344 gs~Dg~I~iWd~~ 356 (643)
...|..|..|+++
T Consensus 329 ~~~ds~v~kw~~~ 341 (441)
T d1qnia2 329 LFIDSQVCKWNIA 341 (441)
T ss_dssp ETTTTEEEEEEHH
T ss_pred CCCCCEEEEECCC
T ss_conf 2443168972354
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=3.8e-09 Score=78.28 Aligned_cols=196 Identities=9% Similarity=-0.025 Sum_probs=75.5
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEE
Q ss_conf 7769999938999899997-899099990999833898703798889999917999899995999499997799805785
Q 006497 73 CSINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~ 151 (643)
..-..|++++++++.++.. .++.+..++...................+++.++++++++....+.+++++.........
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112000000
Q ss_pred ECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 34888885799994599989999499919999779982456860269884899995999989999789909999889993
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGR 231 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~ 231 (643)
........++++.++++++++-..+..+.+++...................++++++++++++...++.|..+|.+...
T Consensus 94 -~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 94 -FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp -CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred -EEEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCE
T ss_conf -1000000000245532057503355532112322220122320366775205454899886410256433222343100
Q ss_pred EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 16796368986799999499999999979992999987
Q 006497 232 ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDI 269 (643)
Q Consensus 232 ~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~ 269 (643)
........-.....+++.++++++++....+.|..++.
T Consensus 173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~ 210 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 210 (260)
T ss_dssp EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECT
T ss_pred EEEEECCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEC
T ss_conf 12221011478763123100013432148998999969
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.35 E-value=4.4e-09 Score=77.77 Aligned_cols=238 Identities=10% Similarity=-0.023 Sum_probs=155.4
Q ss_pred CCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEE
Q ss_conf 8889999917999899995-999499997799805785348888857999945999899994999199997799824568
Q 006497 115 HAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 115 ~~V~~i~~s~~~~~L~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~ 193 (643)
-.-..+++.++++++++.. ..+.+..++...................+++.++++.+++....+.+++++..+...+..
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~ 93 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP 93 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC
T ss_pred CCCCEEEECCCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCEEEEECCCCCEEEEEEEECEEEEEEECCCEEEEE
T ss_conf 98788999699999999718998899993899668974369866840899938998898631000035542112000000
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCE
Q ss_conf 60269884899995999989999789909999889993167963689867999994999999999799929999879986
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMK 273 (643)
Q Consensus 194 ~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~ 273 (643)
.. ......+++++++++++++-..+..+..++...................++++++++++++...++.|..+|.....
T Consensus 94 ~~-~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~ 172 (260)
T d1rwia_ 94 FD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN 172 (260)
T ss_dssp CC-SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred EE-EEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCCE
T ss_conf 10-00000000245532057503355532112322220122320366775205454899886410256433222343100
Q ss_pred EEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 77795068888379999069998999996899599997799965089803358664899993999999999789939999
Q 006497 274 ELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFW 353 (643)
Q Consensus 274 ~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iW 353 (643)
..............+++.+ +++++++...++.|..++...... .......-.....|++++++.++++-..++.|+.+
T Consensus 173 ~~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i 250 (260)
T d1rwia_ 173 QVVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKL 250 (260)
T ss_dssp EEECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEE
T ss_pred EEEEECCCCCCCCCCEEEE-EEEEEEEECCCCEEEEEECCCCEE-EEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEE
T ss_conf 1222101147876312310-001343214899899996999769-99706998981799990899999997999989999
Q ss_pred EC
Q ss_conf 35
Q 006497 354 CR 355 (643)
Q Consensus 354 d~ 355 (643)
+.
T Consensus 251 ~~ 252 (260)
T d1rwia_ 251 TS 252 (260)
T ss_dssp CC
T ss_pred EC
T ss_conf 59
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.34 E-value=2.5e-08 Score=72.29 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=99.6
Q ss_pred CCEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCEEE---EE--CCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCC
Q ss_conf 88489999599998999978-9909999889993167---96--36898679999949999999997-999299998799
Q 006497 199 WDVKSVDWHPTKSLLVSGGK-DSLVKLWDAKSGRELC---SF--HGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRA 271 (643)
Q Consensus 199 ~~V~~i~~sp~~~~l~sg~~-dg~I~iwd~~s~~~~~---~~--~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~ 271 (643)
..+.++.|+|+++++++++. ...|.+|+......+. .. .........++|+++++++++.. .++.|.+|++..
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~ 224 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCCCCCEEEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 81159788899998998207998799997068871665251111278874089998899866999515899899999559
Q ss_pred CEEE--EE---EE--------------CCCCCEEEEEEECCCCCEEEEEEC-C-----CCEEEEECCCCCCEEEEEC---
Q ss_conf 8677--79---50--------------688883799990699989999968-9-----9599997799965089803---
Q 006497 272 MKEL--ES---FR--------------GHRKDVTALAWHPFHEEYFVSGSL-D-----GSIFHWLVGHETPQVEIHN--- 323 (643)
Q Consensus 272 ~~~~--~~---~~--------------~~~~~I~~i~~sp~~~~~l~sgs~-d-----g~I~iwd~~~~~~~~~~~~--- 323 (643)
.+.. .. .. ........+.+++ ++++++++.. + +.|..|++...........
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEEEE
T ss_conf 8753778731240245565566654444357763169989-999789971357875422799998568871446767667
Q ss_pred --CCCCCEEEEEECC-CCCEEEEE-ECCCEEEEEECCCCC
Q ss_conf --3586648999939-99999999-789939999357999
Q 006497 324 --VHDNTVWDLAWHP-IGYLLCSG-SNDHTTKFWCRNRPG 359 (643)
Q Consensus 324 --~h~~~V~~l~~s~-d~~~L~sg-s~Dg~I~iWd~~~~~ 359 (643)
.......++++++ ++++|+++ ..++.|.+|+++...
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred EECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 7767998647896489999999996799949999982886
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.31 E-value=3.2e-08 Score=71.47 Aligned_cols=194 Identities=11% Similarity=0.053 Sum_probs=107.0
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC--EEEE
Q ss_conf 76999993899989999789909999099983389870379888999991799989999599949999779980--5785
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN--VKAN 151 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~--~~~~ 151 (643)
.+..+++++||+++++...+++|+.|+... + ...+......+.+++|.++++++++...++.+.+|+..... ....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~ 106 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 106 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCCCEEECCCCCEEEEECCCCEEEEEECCC-C-EEEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEEECCCCCCEEEC
T ss_conf 847877999988999968899899990899-8-89997179985368986778869983289537888710111101210
Q ss_pred -ECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEEC----------CCCCEEEEEECCCCCEEEEEECCC
Q ss_conf -348888857999945999899994999199997799824568602----------698848999959999899997899
Q 006497 152 -KSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG----------HGWDVKSVDWHPTKSLLVSGGKDS 220 (643)
Q Consensus 152 -~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~----------~~~~V~~i~~sp~~~~l~sg~~dg 220 (643)
..........+++.++++++++.+.++.+..++............ .......+.++. +.++++.+.++
T Consensus 107 ~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~ 185 (302)
T d2p4oa1 107 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKM 185 (302)
T ss_dssp EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTT
T ss_pred CCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC-CCEEEECCCCC
T ss_conf 23578632216677157978750356554102421687303675188640143157632243201169-83044037887
Q ss_pred CEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 099998899931679--63689867999994999999999799929999879
Q 006497 221 LVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIR 270 (643)
Q Consensus 221 ~I~iwd~~s~~~~~~--~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~ 270 (643)
.|+.++......... ..........++++++++++++...++.|..++..
T Consensus 186 ~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 186 LLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp EEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCCCCEEEECCC
T ss_conf 6986344333323453101589987523787999999997489918998789
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.28 E-value=7.5e-08 Score=68.71 Aligned_cols=239 Identities=8% Similarity=0.027 Sum_probs=154.4
Q ss_pred CEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEE
Q ss_conf 33898703798889999917999899995999499997799805785348888857999945999899994999199997
Q 006497 105 NFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWD 184 (643)
Q Consensus 105 ~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwd 184 (643)
+.+..+. ....+..+++.+|++++++...+++|..|+.+... ..+......+.+++|.++++.+++...++.+.+|+
T Consensus 19 ~v~~~~p-~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~ 95 (302)
T d2p4oa1 19 KIITSFP-VNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVS 95 (302)
T ss_dssp EEEEEEC-TTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CEEEECC-CCCCCCCEEECCCCCEEEEECCCCEEEEEECCCCE--EEEECCCCCCCEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 0788888-99884787799998899996889989999089988--99971799853689867788699832895378887
Q ss_pred CCCCEE-EEEE--ECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC----------CCCCCEEEEEECCC
Q ss_conf 799824-5686--0269884899995999989999789909999889993167963----------68986799999499
Q 006497 185 FARCQE-ERSL--TGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH----------GHKNMVLCVKWNQN 251 (643)
Q Consensus 185 l~~~~~-~~~~--~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~----------~~~~~i~~i~~sp~ 251 (643)
...... ...+ .........+++.++++++++.+.++.+..+|...+....... ........+.+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~- 174 (302)
T d2p4oa1 96 LVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG- 174 (302)
T ss_dssp EECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-
T ss_pred ECCCCCCEEECCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEECCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCC-
T ss_conf 1011110121023578632216677157978750356554102421687303675188640143157632243201169-
Q ss_pred CCEEEEEECCCCEEEEECCCCEEEEE--EECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCE
Q ss_conf 99999997999299998799867779--5068888379999069998999996899599997799965089803358664
Q 006497 252 GNWVLTASKDQIIKLYDIRAMKELES--FRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 329 (643)
Q Consensus 252 g~~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 329 (643)
+.++++.+.++.|..+++........ ..........+++++ +++++++...++.|..++.+.....+......-...
T Consensus 175 ~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~-dG~l~va~~~~~~V~~i~p~G~~~~~~~~~~~~~~p 253 (302)
T d2p4oa1 175 NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV-EGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGS 253 (302)
T ss_dssp TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT-TCCEEEECBTTCCEEEECTTCCEEEEECGGGTCTTE
T ss_pred CCEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCC
T ss_conf 8304403788769863443333234531015899875237879-999999974899189987899789999637898882
Q ss_pred EEEEE---CCCCCEEEEEECCC
Q ss_conf 89999---39999999997899
Q 006497 330 WDLAW---HPIGYLLCSGSNDH 348 (643)
Q Consensus 330 ~~l~~---s~d~~~L~sgs~Dg 348 (643)
++++| .+|++.|+.++..+
T Consensus 254 t~vafg~~~~D~~~Lyvtt~~g 275 (302)
T d2p4oa1 254 TAVAFGQTEGDCTAIYVVTNGG 275 (302)
T ss_dssp EEEEECCSTTTTTEEEEEECTT
T ss_pred EEEEECCCCCCCCEEEEECCCC
T ss_conf 4899708788789899998898
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.24 E-value=1.1e-07 Score=67.55 Aligned_cols=250 Identities=10% Similarity=0.053 Sum_probs=147.1
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEE-CCCCCCEEEEEECCCCCEEEEEE---CCCCEEE
Q ss_conf 7506888776999993899989999789909999099983-38987-03798889999917999899995---9994999
Q 006497 66 TSLNKNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFN-FEMIL-QAHDHAIRSMVWSHNDNWMVSGD---DGGAIKY 140 (643)
Q Consensus 66 ~~l~~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~-~~~~l-~~h~~~V~~i~~s~~~~~L~sg~---~dg~I~i 140 (643)
.........+.-|+|++++++|++... +.+..|.+.... ..... .........+.++++++.+++.. ..+.|..
T Consensus 33 ~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~ 111 (365)
T d1jofa_ 33 RTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp EEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred EEECCCCCCCCEEEECCCCCEEEEEEC-CCEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEEEEEECCCCCEEEE
T ss_conf 445168999777999489899999938-9478999908997698764128998678998789987999993279978998
Q ss_pred EECCCC-------------CE----EEEECCCCCCEEEEEEECCCCEEEEEEC-CCCEEEEECCCCEEEE---EEE--CC
Q ss_conf 977998-------------05----7853488888579999459998999949-9919999779982456---860--26
Q 006497 141 WQNNMN-------------NV----KANKSAHKESVRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEER---SLT--GH 197 (643)
Q Consensus 141 wd~~~~-------------~~----~~~~~~~~~~I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~---~~~--~~ 197 (643)
+.+... .. ..........+.++.|++|++++++++. ...|.+|+......+. ... ..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T d1jofa_ 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred EECCCCCCCCEEEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCEEEEEECCCCCCEEECCCEEECCC
T ss_conf 67457887420686640330047646755688981159788899998998207998799997068871665251111278
Q ss_pred CCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEEC-------------------CCCCCEEEEEECCCCCEEEE
Q ss_conf 98848999959999899997-89909999889993167963-------------------68986799999499999999
Q 006497 198 GWDVKSVDWHPTKSLLVSGG-KDSLVKLWDAKSGRELCSFH-------------------GHKNMVLCVKWNQNGNWVLT 257 (643)
Q Consensus 198 ~~~V~~i~~sp~~~~l~sg~-~dg~I~iwd~~s~~~~~~~~-------------------~~~~~i~~i~~sp~g~~l~s 257 (643)
....+.++|+++++++++.. .++.|.+|++...+...... ........+.+++++++|++
T Consensus 192 g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv 271 (365)
T d1jofa_ 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA 271 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEE
T ss_conf 87408999889986699951589989999955987537787312402455655666544443577631699899997899
Q ss_pred EEC------CCCEEEEECCCCEEEEE---E---ECCCCCEEEEEEECCCCCEEEEE-ECCCCEEEEECCCCC
Q ss_conf 979------99299998799867779---5---06888837999906999899999-689959999779996
Q 006497 258 ASK------DQIIKLYDIRAMKELES---F---RGHRKDVTALAWHPFHEEYFVSG-SLDGSIFHWLVGHET 316 (643)
Q Consensus 258 ~s~------dg~I~iwd~~~~~~~~~---~---~~~~~~I~~i~~sp~~~~~l~sg-s~dg~I~iwd~~~~~ 316 (643)
+.. ...|..|++.....+.. + .........+++++.++++|+++ ..++.|.+|+++...
T Consensus 272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp EEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ECCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCEEEECCCCCCEEEEEECCCCEEEEEEEECCC
T ss_conf 713578754227999985688714467676677767998647896489999999996799949999982886
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.22 E-value=1.5e-07 Score=66.45 Aligned_cols=212 Identities=9% Similarity=0.080 Sum_probs=92.8
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCC----CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 769999938999899997899099990999833898703798----8899999179998999959994999977998057
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDH----AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVK 149 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~----~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~ 149 (643)
.-..++|.++++.|+++.....|..++.+...........++ ..+.+++.+++++.++-. .+.+..|+...
T Consensus 72 ~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~-~~~~~~~~~~~---- 146 (314)
T d1pjxa_ 72 IPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-AGEVAPADYTR---- 146 (314)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-BCBCTTSCCCB----
T ss_pred CCEEEEEECCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECC-CCCCCCCCCCC----
T ss_conf 5306999079998999977983999947774799973343245457872789888998999148-66754320110----
Q ss_pred EEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCC-----EEEEEECCCCEEE
Q ss_conf 85348888857999945999899994999199997799824568602698848999959999-----8999978990999
Q 006497 150 ANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKS-----LLVSGGKDSLVKL 224 (643)
Q Consensus 150 ~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~-----~l~sg~~dg~I~i 224 (643)
.... .++.|+.++.+. +...... ....-+.++|+++++ ++++-+..+.|..
T Consensus 147 ---~~~~-------------------~~G~v~~~~~dg-~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~ 202 (314)
T d1pjxa_ 147 ---SMQE-------------------KFGSIYCFTTDG-QMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp ---TTSS-------------------SCEEEEEECTTS-CEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred ---EECC-------------------CCCEEEEEEECC-CEEEEEC-CCCEEEEEEECCCCCCCEEEEEEEEECCCCEEE
T ss_conf ---0026-------------------884389995257-4037507-853221369978877630379998602431177
Q ss_pred EECCCCCEEE------EECC-CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCE
Q ss_conf 9889993167------9636-89867999994999999999799929999879986777950688883799990699989
Q 006497 225 WDAKSGRELC------SFHG-HKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEY 297 (643)
Q Consensus 225 wd~~s~~~~~------~~~~-~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~ 297 (643)
||+.....+. .+.. .......+++..+|++.++....+.|.+||.+.++.+..+.......++++|.++...+
T Consensus 203 ~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~l 282 (314)
T d1pjxa_ 203 YDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp EEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEE
T ss_pred EECCCCCCCCEEEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCEE
T ss_conf 61167654301568997133566641025783478579998279999999699997999997999987899992898999
Q ss_pred EEEEECCCCEEEEECCC
Q ss_conf 99996899599997799
Q 006497 298 FVSGSLDGSIFHWLVGH 314 (643)
Q Consensus 298 l~sgs~dg~I~iwd~~~ 314 (643)
+++.+.++.|...++..
T Consensus 283 yVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 283 FVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEETTTTEEEEEECSS
T ss_pred EEEECCCCCEEEEECCC
T ss_conf 99987899199997899
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=9.5e-08 Score=67.97 Aligned_cols=281 Identities=11% Similarity=0.090 Sum_probs=137.1
Q ss_pred CCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCCCEEEEECC--CCCCEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 877699999389998999978---------99099990999833898703--7988899999179998999959994999
Q 006497 72 RCSINRVLWTPTGRRLITGSQ---------SGEFTLWNGQSFNFEMILQA--HDHAIRSMVWSHNDNWMVSGDDGGAIKY 140 (643)
Q Consensus 72 ~~~I~~i~~spdg~~L~tgs~---------dg~I~iwd~~~~~~~~~l~~--h~~~V~~i~~s~~~~~L~sg~~dg~I~i 140 (643)
...+....||+|+++|+.... .+.+.++|+.+++....... ....+....|+|||+.||... ++.|.+
T Consensus 60 ~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~ 138 (465)
T d1xfda1 60 SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYY 138 (465)
T ss_dssp TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEE
T ss_pred CCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEE
T ss_conf 4553213898988869999845100476033528999856884564157667764311002426785699996-132999
Q ss_pred EECCCCCEEEEECC-CCCC-----------------EEEEEEECCCCEEEEEEC-CCCEEEEECCCCEEEEEEECCCCCE
Q ss_conf 97799805785348-8888-----------------579999459998999949-9919999779982456860269884
Q 006497 141 WQNNMNNVKANKSA-HKES-----------------VRDLSFCRTDLKFCSCSD-DTTVKVWDFARCQEERSLTGHGWDV 201 (643)
Q Consensus 141 wd~~~~~~~~~~~~-~~~~-----------------I~~l~~s~d~~~l~s~s~-dg~I~iwdl~~~~~~~~~~~~~~~V 201 (643)
.+...+........ .... -..+.|+||+++|+.... +..|..+.+.... ......+
T Consensus 139 ~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~ 213 (465)
T d1xfda1 139 CAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTV 213 (465)
T ss_dssp ESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCC
T ss_pred EECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCEEECCCCC-----CCCCCEE
T ss_conf 95489965897112676604436643100123036643489779898689999536666146412344-----5444313
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC------CCCCCEEEEEECCCCCEEEEEEC-C---CCEEEEECCC
Q ss_conf 899995999989999789909999889993167963------68986799999499999999979-9---9299998799
Q 006497 202 KSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH------GHKNMVLCVKWNQNGNWVLTASK-D---QIIKLYDIRA 271 (643)
Q Consensus 202 ~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~------~~~~~i~~i~~sp~g~~l~s~s~-d---g~I~iwd~~~ 271 (643)
..+.+-..+... ....+.++|+.++....... .....+..+.|++++++++.... + ..|.++|..+
T Consensus 214 ~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~t 289 (465)
T d1xfda1 214 KPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT 289 (465)
T ss_dssp EEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT
T ss_pred EEEECCCCCCCC----CCEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCEEEEECCCC
T ss_conf 345302568889----7213799836898178999525767666630456687579938999974100301379970799
Q ss_pred CEEEEEEECC-CCCE----EEEEEECCCCCEEE--EEECCC--CEEEEECC-----CCCCEEEEECCCCCCEEEE-EECC
Q ss_conf 8677795068-8883----79999069998999--996899--59999779-----9965089803358664899-9939
Q 006497 272 MKELESFRGH-RKDV----TALAWHPFHEEYFV--SGSLDG--SIFHWLVG-----HETPQVEIHNVHDNTVWDL-AWHP 336 (643)
Q Consensus 272 ~~~~~~~~~~-~~~I----~~i~~sp~~~~~l~--sgs~dg--~I~iwd~~-----~~~~~~~~~~~h~~~V~~l-~~s~ 336 (643)
+++...+... ...| ....|++++..+++ ....+| .++...+. ........+....-.|..+ .|+.
T Consensus 290 g~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~ 369 (465)
T d1xfda1 290 GVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE 369 (465)
T ss_dssp CCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET
T ss_pred CCEEEEEEECCCCEEECCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEEECC
T ss_conf 92787789727851735678605746898057777654316671689983156666788626982269921997789838
Q ss_pred CCCEEEE-EECC--CEEEEEECCCCCCCC
Q ss_conf 9999999-9789--939999357999953
Q 006497 337 IGYLLCS-GSND--HTTKFWCRNRPGDTA 362 (643)
Q Consensus 337 d~~~L~s-gs~D--g~I~iWd~~~~~~~~ 362 (643)
+++.|+. +..+ +.-.+|.++-.+...
T Consensus 370 ~~~~vyF~a~~~~p~~~hly~v~l~g~~~ 398 (465)
T d1xfda1 370 KGNKIYFLSTEDLPRRRQLYSANTVGNFN 398 (465)
T ss_dssp TTTEEEEEESSSCTTCCEEEEECSSTTCC
T ss_pred CCCEEEEEEECCCCCCEEEEEEECCCCCC
T ss_conf 99999999968999826899997789986
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.6e-07 Score=64.71 Aligned_cols=233 Identities=13% Similarity=0.091 Sum_probs=109.6
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEE
Q ss_conf 099990999833898703798889999917999899995999---49999779980578534888885799994599989
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGG---AIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKF 171 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg---~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l 171 (643)
.|+|.|.+..+..... .....+...+|+|||+.||....+. .+.+.+........ +..+........|++++..+
T Consensus 20 ~l~i~d~dG~~~~~l~-~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~spdg~~i 97 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKL 97 (269)
T ss_dssp EEEEEETTSCSCEEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECCSSCEEEEEECTTSSEE
T ss_pred EEEEECCCCCCCEEEE-CCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEEE-EEEEECCCCCCEECCCCCEE
T ss_conf 9999928999767986-589842603887899989999815267513443113675067-76420245430244889864
Q ss_pred EEEEC-CCC--EEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCC--CEEEEECCCCCEEEEECCCCCCEEE
Q ss_conf 99949-991--99997799824568602698848999959999899997-899--0999988999316796368986799
Q 006497 172 CSCSD-DTT--VKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDS--LVKLWDAKSGRELCSFHGHKNMVLC 245 (643)
Q Consensus 172 ~s~s~-dg~--I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~-~dg--~I~iwd~~s~~~~~~~~~~~~~i~~ 245 (643)
+.... ++. +..+..... ................++.++..++... .++ .|.+.++.... ...+.........
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~ 175 (269)
T d2hqsa1 98 AFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQD 175 (269)
T ss_dssp EEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEE
T ss_pred EEEEECCCCCCEEECCCCCC-CCEEEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCC-CEEEECCCCCCCC
T ss_conf 67640278641000022212-200001014421145434554433000012687438654213310-0010001222234
Q ss_pred EEECCCCCEEEEEECC-CC--EEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEEC---CCCEEEEECCCCCCEE
Q ss_conf 9994999999999799-92--9999879986777950688883799990699989999968---9959999779996508
Q 006497 246 VKWNQNGNWVLTASKD-QI--IKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSL---DGSIFHWLVGHETPQV 319 (643)
Q Consensus 246 i~~sp~g~~l~s~s~d-g~--I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~---dg~I~iwd~~~~~~~~ 319 (643)
..|+++++.++..+.+ +. +.+.|..... ..............|+| +++.|+..+. ...|++++++... ..
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SP-DG~~i~f~s~~~~~~~l~~~~~dg~~-~~ 251 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTDGRF-KA 251 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCC--EEECCCSSSCEEEEECT-TSSEEEEEEEETTEEEEEEEETTSCC-EE
T ss_pred CCCCCCCCEEEEEEECCCCEEEEEEECCCCC--CEEEECCCCCCCEEECC-CCCEEEEEECCCCCCEEEEEECCCCC-EE
T ss_conf 3223454305778605880125676035644--05850686544558989-99999999817998479999999997-79
Q ss_pred EEECCCCCCEEEEEECC
Q ss_conf 98033586648999939
Q 006497 320 EIHNVHDNTVWDLAWHP 336 (643)
Q Consensus 320 ~~~~~h~~~V~~l~~s~ 336 (643)
. +......+...+|+|
T Consensus 252 ~-lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 252 R-LPATDGQVKFPAWSP 267 (269)
T ss_dssp E-CCCSSSEEEEEEECC
T ss_pred E-EECCCCCEEEEEECC
T ss_conf 9-857998588378289
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.17 E-value=2.7e-07 Score=64.64 Aligned_cols=179 Identities=12% Similarity=0.120 Sum_probs=75.4
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC------CCCEEEEEECCCCC-EEEEE-ECCCCEEEEECCC
Q ss_conf 7699999389998999978990999909998338987037------98889999917999-89999-5999499997799
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH------DHAIRSMVWSHNDN-WMVSG-DDGGAIKYWQNNM 145 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h------~~~V~~i~~s~~~~-~L~sg-~~dg~I~iwd~~~ 145 (643)
.-..|+++++++++++-..+..|++||.+ ++.+..+... ...-..+++..+.. ++++. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699-9999981665788664226630001234455200004775310000025-
Q ss_pred CCEEEEE-CCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEE--CCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 8057853-4888885799994599989999499919999779982456860--269884899995999989999789909
Q 006497 146 NNVKANK-SAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT--GHGWDVKSVDWHPTKSLLVSGGKDSLV 222 (643)
Q Consensus 146 ~~~~~~~-~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~--~~~~~V~~i~~sp~~~~l~sg~~dg~I 222 (643)
++....+ .........+++..++..+++....+.+.+++.. ++.+..+. .+......+++.++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCE
T ss_conf 630240388864254200001478479996326325676268-7501002200102566243201200178620135510
Q ss_pred EEEECCCCCEEEEEC--CCCCCEEEEEECCCCCEEE
Q ss_conf 999889993167963--6898679999949999999
Q 006497 223 KLWDAKSGRELCSFH--GHKNMVLCVKWNQNGNWVL 256 (643)
Q Consensus 223 ~iwd~~s~~~~~~~~--~~~~~i~~i~~sp~g~~l~ 256 (643)
++||.. ++.+.++. +.......|++.+++++++
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~V 215 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILI 215 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEE
T ss_pred EEEECC-CCEEEEECCCCCCCCCCCCCCCCCCEEEE
T ss_conf 023047-94445301132114876232314786999
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.13 E-value=3.9e-07 Score=63.48 Aligned_cols=229 Identities=7% Similarity=-0.007 Sum_probs=127.5
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC----CCEEEEECCC
Q ss_conf 888776999993899989999789909999099983389870379888999991799989999599----9499997799
Q 006497 70 KNRCSINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDG----GAIKYWQNNM 145 (643)
Q Consensus 70 ~h~~~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~d----g~I~iwd~~~ 145 (643)
.....+..++|.++++++++-..++.|..|+.++.+....+.........+++.++++++++...+ +.+...+...
T Consensus 37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~ 116 (319)
T d2dg1a1 37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG 116 (319)
T ss_dssp SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred CCCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCC
T ss_conf 68867470789999999999779999999989999599999489987038999999999999568973110499873899
Q ss_pred CCEEEEECC--CCCCEEEEEEECCCCEEEEEEC------CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-
Q ss_conf 805785348--8888579999459998999949------9919999779982456860269884899995999989999-
Q 006497 146 NNVKANKSA--HKESVRDLSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG- 216 (643)
Q Consensus 146 ~~~~~~~~~--~~~~I~~l~~s~d~~~l~s~s~------dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg- 216 (643)
......... .......+++.++++..++... .+.+..++.... .+..+...-...+.++|+++++.|+++
T Consensus 117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad 195 (319)
T d2dg1a1 117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTE 195 (319)
T ss_dssp CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEE
T ss_pred CEEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCCC-EEEEEEECCCEEEEEEECCCCCEEEEEC
T ss_conf 636444267775558752267730653200135400257421578841663-3578861233010001012221278740
Q ss_pred ECCCCEEEEECCCCC-EEEE-------ECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECC------C
Q ss_conf 789909999889993-1679-------6368986799999499999999979992999987998677795068------8
Q 006497 217 GKDSLVKLWDAKSGR-ELCS-------FHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGH------R 282 (643)
Q Consensus 217 ~~dg~I~iwd~~s~~-~~~~-------~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~------~ 282 (643)
+..+.|+.||++... .... ..........+++..+|++.++...++.|.+||- +++.+.++... .
T Consensus 196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~ 274 (319)
T d2dg1a1 196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 274 (319)
T ss_dssp GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred CCCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCC
T ss_conf 4689147999769983620246333312577641036417389999999848998999979-995988996887577867
Q ss_pred CCEEEEEEECCCCCEEEEE
Q ss_conf 8837999906999899999
Q 006497 283 KDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 283 ~~I~~i~~sp~~~~~l~sg 301 (643)
..+++++|.+ +...+++.
T Consensus 275 ~~~~~~~~~~-~~~~~~~t 292 (319)
T d2dg1a1 275 LRSTHPQFIP-GTNQLIIC 292 (319)
T ss_dssp CBCCEEEECT-TSCEEEEE
T ss_pred CEEEEEEEEC-CCCEEEEE
T ss_conf 5046677807-99889998
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=4.4e-07 Score=63.03 Aligned_cols=250 Identities=9% Similarity=0.042 Sum_probs=117.4
Q ss_pred EECCCCCEEEEEECCCCEEEEECCCCCEEEEECCC---CCCEEEEEECCCCCEEEEEEC---------CCCEEEEECCCC
Q ss_conf 99389998999978990999909998338987037---988899999179998999959---------994999977998
Q 006497 79 LWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAH---DHAIRSMVWSHNDNWMVSGDD---------GGAIKYWQNNMN 146 (643)
Q Consensus 79 ~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h---~~~V~~i~~s~~~~~L~sg~~---------dg~I~iwd~~~~ 146 (643)
.|.+++.++. -..+|.|.+||..+++....+... ...+....|++|+++++.... .+.+.++|+.++
T Consensus 23 ~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 23 KWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred EEECCCCEEE-EECCCCEEEEECCCCCEEEEECCCCCCCCCCCEEEECCCCCEEEEEECCCCEEEEECCCCEEEEECCCC
T ss_conf 8917984899-928996999987899889987276444455321389898886999984510047603352899985688
Q ss_pred CEEEEEC--CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECC-CC-----------------CEEEEEE
Q ss_conf 0578534--88888579999459998999949991999977998245686026-98-----------------8489999
Q 006497 147 NVKANKS--AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGH-GW-----------------DVKSVDW 206 (643)
Q Consensus 147 ~~~~~~~--~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~-~~-----------------~V~~i~~ 206 (643)
....... .....+....|+||++.||... ++.|.+.+...+..++..... .. .-..+.|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred CEEECCCCCCCCCCCCEEEECCCCCEEEEEE-CCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHCCCCCEEEE
T ss_conf 4564157667764311002426785699996-132999954899658971126766044366431001230366434897
Q ss_pred CCCCCEEEEEEC-CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE------
Q ss_conf 599998999978-9909999889993167963689867999994999999999799929999879986777950------
Q 006497 207 HPTKSLLVSGGK-DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR------ 279 (643)
Q Consensus 207 sp~~~~l~sg~~-dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~------ 279 (643)
+||++.|+.... +..|..+.+.... ......+..+.+...|... ....+.++|+..........
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~-----~~~~p~~~~~~Yp~~G~~n----p~~~l~v~d~~~~~~~~~~~~~~~~~ 251 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSEN----PSISLHVIGLNGPTHDLEMMPPDDPR 251 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSCC----CEEEEEEEESSSSCCCEECCCCCCGG
T ss_pred CCCCCEEEEEEECCCCCCEEECCCCC-----CCCCCEEEEEECCCCCCCC----CCEEEEEEECCCCCEEEEEECCCCCC
T ss_conf 79898689999536666146412344-----5444313345302568889----72137998368981789995257676
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEC-C---CCEEEEECCCCCCEEEEECCCCCCE----EEEEECCCCCE
Q ss_conf 688883799990699989999968-9---9599997799965089803358664----89999399999
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSL-D---GSIFHWLVGHETPQVEIHNVHDNTV----WDLAWHPIGYL 340 (643)
Q Consensus 280 ~~~~~I~~i~~sp~~~~~l~sgs~-d---g~I~iwd~~~~~~~~~~~~~h~~~V----~~l~~s~d~~~ 340 (643)
....-+..+.|++ ++++++.... + ..|.++|..++.............| ....|++|++.
T Consensus 252 ~~~~y~~~~~W~~-d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~ 319 (465)
T d1xfda1 252 MREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRK 319 (465)
T ss_dssp GSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred CCCCEEEEEEECC-CCEEEEEEECCCCCCCEEEEECCCCCCEEEEEEECCCCEEECCCCCEEECCCCCE
T ss_conf 6663045668757-9938999974100301379970799927877897278517356786057468980
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.11 E-value=4.8e-07 Score=62.81 Aligned_cols=236 Identities=12% Similarity=0.130 Sum_probs=158.4
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC------CCCCEEEEEEECCCCEEEEE--ECCCCEEEEECCC
Q ss_conf 889999917999899995999499997799805785348------88885799994599989999--4999199997799
Q 006497 116 AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA------HKESVRDLSFCRTDLKFCSC--SDDTTVKVWDFAR 187 (643)
Q Consensus 116 ~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~------~~~~I~~l~~s~d~~~l~s~--s~dg~I~iwdl~~ 187 (643)
.-..+++.++++++++-..+..|++||.+ ++.+..+.. .......+++..+....+.. +.++.|.+++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CCCEEEECCCCCEEEEECCCCEEEEEECC-CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC-
T ss_conf 90079994999899997998989999699-9999981665788664226630001234455200004775310000025-
Q ss_pred CEEEEEEE-CCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE--CCCCCCEEEEEECCCCCEEEEEECCCCE
Q ss_conf 82456860-26988489999599998999978990999988999316796--3689867999994999999999799929
Q 006497 188 CQEERSLT-GHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSF--HGHKNMVLCVKWNQNGNWVLTASKDQII 264 (643)
Q Consensus 188 ~~~~~~~~-~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~--~~~~~~i~~i~~sp~g~~l~s~s~dg~I 264 (643)
+.....+. ........+++.+++.++++....+.+.+++.. ++.+..+ ..+......+++.++++++++....+.|
T Consensus 102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 180 (279)
T ss_dssp SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred CCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC-CCEEECCCCCCCCCCCCEEEECCCEEEEEEECCCCCE
T ss_conf 630240388864254200001478479996326325676268-7501002200102566243201200178620135510
Q ss_pred EEEECCCCEEEEEEE--CCCCCEEEEEEECCCCCEEEEEEC-CCCEEEEECCCCCCEEEEEC-CCCCCEEEEEECCCCCE
Q ss_conf 999879986777950--688883799990699989999968-99599997799965089803-35866489999399999
Q 006497 265 KLYDIRAMKELESFR--GHRKDVTALAWHPFHEEYFVSGSL-DGSIFHWLVGHETPQVEIHN-VHDNTVWDLAWHPIGYL 340 (643)
Q Consensus 265 ~iwd~~~~~~~~~~~--~~~~~I~~i~~sp~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~d~~~ 340 (643)
++||.. ++.+.++. +.......+++.+ +++++++-.. +..|.+++. +++....+.. ......+.+++.+|+.+
T Consensus 181 ~~~d~~-G~~~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 181 KVFNYE-GQYLRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred EEEECC-CCEEEEECCCCCCCCCCCCCCCC-CCEEEEEECCCCCEEEEECC-CCCEEEEEECCCCCCCEEEEEEECCCCE
T ss_conf 023047-94445301132114876232314-78699997899808999999-9999999968888898837999089919
Q ss_pred EEEEECCCEEEEEECCCC
Q ss_conf 999978993999935799
Q 006497 341 LCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 341 L~sgs~Dg~I~iWd~~~~ 358 (643)
++++.++.|++|+...-
T Consensus 258 -~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 258 -VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp -EEEETTTEEEEEECSCC
T ss_pred -EEEECCCEEEEEEEEEE
T ss_conf -99918996999872203
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=7.3e-07 Score=61.45 Aligned_cols=216 Identities=11% Similarity=0.126 Sum_probs=113.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCC---CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEE--EEECC
Q ss_conf 887769999938999899997899---0999909998338987037988899999179998999959-99499--99779
Q 006497 71 NRCSINRVLWTPTGRRLITGSQSG---EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GGAIK--YWQNN 144 (643)
Q Consensus 71 h~~~I~~i~~spdg~~L~tgs~dg---~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~-dg~I~--iwd~~ 144 (643)
+...+..-+|||||+.||....+. .+.+.+....... .+..+.+......|+++++.++.... ++... .+...
T Consensus 37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~ 115 (269)
T d2hqsa1 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA 115 (269)
T ss_dssp ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCEE-EEEEEECCCCCCEECCCCCEEEEEEECCCCCCEEECCCC
T ss_conf 8984260388789998999981526751344311367506-776420245430244889864676402786410000222
Q ss_pred CCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCC--CEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCC-
Q ss_conf 9805785348888857999945999899994-999--199997799824568602698848999959999899997899-
Q 006497 145 MNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDT--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDS- 220 (643)
Q Consensus 145 ~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s-~dg--~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg- 220 (643)
..... .............++.++..++... .++ .|.+.++...... .+...........|+++++.++..+.++
T Consensus 116 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 116 SGQIR-QVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp TCCEE-ECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred CCCCE-EEEECCCCCCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCE-EEECCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf 12200-00101442114543455443300001268743865421331000-10001222234322345430577860588
Q ss_pred --CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC---CCCEEEEECCCCEEEEEEECCCCCEEEEEEEC
Q ss_conf --0999988999316796368986799999499999999979---99299998799867779506888837999906
Q 006497 221 --LVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK---DQIIKLYDIRAMKELESFRGHRKDVTALAWHP 292 (643)
Q Consensus 221 --~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp 292 (643)
.|.+.|...+.. .+...........|+|||++|+..+. ...|.++++.... ...+......+...+|+|
T Consensus 194 ~~~i~~~~~~~~~~--~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 194 QQHIAKQDLATGGV--QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARLPATDGQVKFPAWSP 267 (269)
T ss_dssp CEEEEEEETTTCCE--EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEECCCSSSEEEEEEECC
T ss_pred CEEEEEEECCCCCC--EEEECCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCC-EEEEECCCCCEEEEEECC
T ss_conf 01256760356440--585068654455898999999999817998479999999997-799857998588378289
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.99 E-value=1.4e-06 Score=59.30 Aligned_cols=232 Identities=8% Similarity=0.038 Sum_probs=149.5
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEC----CCCEEEEECCCC
Q ss_conf 7988899999179998999959994999977998057853488888579999459998999949----991999977998
Q 006497 113 HDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARC 188 (643)
Q Consensus 113 h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~----dg~I~iwdl~~~ 188 (643)
....+..++|.++++++++-..++.|..|+.+.................+++.++++.+++... .+.+...+....
T Consensus 38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CCCCCEECEECCCCCEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEECCCCCCCEEEEEECCCCC
T ss_conf 88674707899999999997799999999899995999994899870389999999999995689731104998738996
Q ss_pred EEEEEEEC--CCCCEEEEEECCCCCEEEEEEC------CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE-E
Q ss_conf 24568602--6988489999599998999978------9909999889993167963689867999994999999999-7
Q 006497 189 QEERSLTG--HGWDVKSVDWHPTKSLLVSGGK------DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA-S 259 (643)
Q Consensus 189 ~~~~~~~~--~~~~V~~i~~sp~~~~l~sg~~------dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~-s 259 (643)
........ .......+++.+++++.++... .+.+..++... +.+..+...-...+.++|+++++.|+++ +
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~~~~pnGia~s~dg~~lyvad~ 196 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQNISVANGIALSTDEKVLWVTET 196 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred EEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCEEEEEECCC-CEEEEEEECCCEEEEEEECCCCCEEEEECC
T ss_conf 3644426777555875226773065320013540025742157884166-335788612330100010122212787404
Q ss_pred CCCCEEEEECCCCE-EEE-------EEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEEC-----CCC
Q ss_conf 99929999879986-777-------95068888379999069998999996899599997799965089803-----358
Q 006497 260 KDQIIKLYDIRAMK-ELE-------SFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHN-----VHD 326 (643)
Q Consensus 260 ~dg~I~iwd~~~~~-~~~-------~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~ 326 (643)
..+.|..||+.... ... ...........+++.. +++++++...++.|.+++- .++.+..+.. .+.
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~ 274 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM 274 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred CCCCEEEEEECCCCCEECCCCCEEEECCCCCCCEEEEEECC-CCCEEEEECCCCEEEEECC-CCCEEEEEECCCCCCCCC
T ss_conf 68914799976998362024633331257764103641738-9999999848998999979-995988996887577867
Q ss_pred CCEEEEEECCCCCEEEEEECC
Q ss_conf 664899993999999999789
Q 006497 327 NTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 327 ~~V~~l~~s~d~~~L~sgs~D 347 (643)
..+++++|.++...+++...|
T Consensus 275 ~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 275 LRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp CBCCEEEECTTSCEEEEEEEC
T ss_pred CEEEEEEEECCCCEEEEECCC
T ss_conf 504667780799889998578
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.59 E-value=2.2e-05 Score=50.49 Aligned_cols=221 Identities=9% Similarity=-0.002 Sum_probs=108.7
Q ss_pred EEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 999993899989999-7899099990999833898703798889999917999899995999499997799805785348
Q 006497 76 NRVLWTPTGRRLITG-SQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 154 (643)
Q Consensus 76 ~~i~~spdg~~L~tg-s~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~ 154 (643)
-...|++....|+.. -..+.|..||.++++.. .+. ....+.++++..++.+++ ++.+| +.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~v-a~~~g-l~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLI-ASDDG-LFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEE-EETTE-EEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEE-EEE-CCCCCEEEEEECCCCEEE-EEECC-CEEEECCCCEEEEEEEE
T ss_conf 587598999999999878999999989989599-998-999817989965998899-97376-38950464513578664
Q ss_pred ----CCCCEEEEEEECCCCEEEEEEC----CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCCEEEE
Q ss_conf ----8888579999459998999949----9919999779982456860269884899995999989999-789909999
Q 006497 155 ----HKESVRDLSFCRTDLKFCSCSD----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLW 225 (643)
Q Consensus 155 ----~~~~I~~l~~s~d~~~l~s~s~----dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg-~~dg~I~iw 225 (643)
....++++.+.++++..++... .+.-.+|.+..++....... -...+.++|+++++.++.+ +..+.|..|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEEC-CCCCCEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 04787661013579799999887426431333305766229968998650-68764024658776689851566324676
Q ss_pred ECCCCC--------EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCC-CC
Q ss_conf 889993--------167963689867999994999999999799929999879986777950688883799990699-98
Q 006497 226 DAKSGR--------ELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH-EE 296 (643)
Q Consensus 226 d~~s~~--------~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~-~~ 296 (643)
++.... ....+.........+++..+|++.++.-..+.|..||- +++.+..+......+++++|--.+ ..
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~ 254 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASR 254 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCE
T ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEEECCCCEEEECC-CCCEEEEECCCCCCEEEEEEECCCCCE
T ss_conf 4535555324535788416755566632678699998953207884688569-992866863899852798982899999
Q ss_pred EEEEEE
Q ss_conf 999996
Q 006497 297 YFVSGS 302 (643)
Q Consensus 297 ~l~sgs 302 (643)
++++..
T Consensus 255 LyvTta 260 (295)
T d2ghsa1 255 LLVTSA 260 (295)
T ss_dssp EEEEEB
T ss_pred EEEEEC
T ss_conf 999978
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.45 E-value=5.1e-05 Score=47.86 Aligned_cols=95 Identities=12% Similarity=0.070 Sum_probs=55.9
Q ss_pred EECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC-CC-----CEEEEECCCCCEEE
Q ss_conf 99389--998999978990999909998338987037988899999179998999959-99-----49999779980578
Q 006497 79 LWTPT--GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDD-GG-----AIKYWQNNMNNVKA 150 (643)
Q Consensus 79 ~~spd--g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~-dg-----~I~iwd~~~~~~~~ 150 (643)
..+|| |+.++..+ ++.|.+.|+.+++.. .+..+.+.+...+|+|||+.|+.... ++ .|.+++...++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEE-EEECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE
T ss_conf 258887999999990-996899989999879-976699852677987899989999862898772289999825995288
Q ss_pred EECC------CCCCEEEEEEECCCCEEEEEE
Q ss_conf 5348------888857999945999899994
Q 006497 151 NKSA------HKESVRDLSFCRTDLKFCSCS 175 (643)
Q Consensus 151 ~~~~------~~~~I~~l~~s~d~~~l~s~s 175 (643)
.... .........|+++++.|+...
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 6416887547644434310279887799997
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.25 E-value=0.00014 Score=44.61 Aligned_cols=225 Identities=5% Similarity=-0.019 Sum_probs=122.5
Q ss_pred EECCC--CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEC-C-----CCEEEEECCCCEEEE
Q ss_conf 99179--998999959994999977998057853488888579999459998999949-9-----919999779982456
Q 006497 121 VWSHN--DNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSD-D-----TTVKVWDFARCQEER 192 (643)
Q Consensus 121 ~~s~~--~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~-d-----g~I~iwdl~~~~~~~ 192 (643)
..+|+ |+.++..+ ++.|.+.|+..++... +..+...+...+|++|++.|+.... + ..|.+++...++...
T Consensus 5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~ 82 (281)
T d1k32a2 5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR 82 (281)
T ss_dssp CEEEEEETTEEEEEE-TTEEEEEETTTCCEEE-EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred CCCCCCCCCEEEEEE-CCCEEEEECCCCCEEE-EECCCCCCCCEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEE
T ss_conf 258887999999990-9968999899998799-76699852677987899989999862898772289999825995288
Q ss_pred EEEC------CCCCEEEEEECCCCCEEEEEECC------CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC
Q ss_conf 8602------69884899995999989999789------90999988999316796368986799999499999999979
Q 006497 193 SLTG------HGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK 260 (643)
Q Consensus 193 ~~~~------~~~~V~~i~~sp~~~~l~sg~~d------g~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~ 260 (643)
.... .........|+++++.|+..... ..+...+........ . .......+.+...+..++....
T Consensus 83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-L--NLGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-C--CSCSCSEEEEETTEEEEEESCS
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEEEE-E--CCCCCCEEEECCCCEEEEEECC
T ss_conf 641688754764443431027988779999713787652024651587760688-0--1786523464699849886204
Q ss_pred CC-----------CEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCC--CEEEEECCCCCCEEEEECCCCC
Q ss_conf 99-----------2999987998677795068888379999069998999996899--5999977999650898033586
Q 006497 261 DQ-----------IIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDG--SIFHWLVGHETPQVEIHNVHDN 327 (643)
Q Consensus 261 dg-----------~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~ 327 (643)
+. ...++........ .............++. ..++.....++ .|++++++.... ..+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~d~~g~~~-~~lt~~~-- 233 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVG--HRIYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-- 233 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEET--TEEEEEECTTSSCEEEEEETTSCSC-EECCCCC--
T ss_pred CCCEEEEECCCCCCEEEEECCCCCEE-ECCCCCCCCCEEEEEC--CCCCEECCCCCCCCEEEEECCCCCE-EEEECCC--
T ss_conf 66404442058862044411366122-4047766642133103--5320001134552128996899965-9810589--
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 648999939999999997899399993579
Q 006497 328 TVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 328 ~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~ 357 (643)
......|++|++.|+.. .++.|.+++++.
T Consensus 234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~ 262 (281)
T d1k32a2 234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 262 (281)
T ss_dssp SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred CCCCCCCCCCCCEEEEE-ECCEEEEEECCC
T ss_conf 86443286798999998-599999998999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.15 E-value=0.00022 Score=43.23 Aligned_cols=220 Identities=10% Similarity=-0.002 Sum_probs=140.0
Q ss_pred EEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEEC
Q ss_conf 9999917999899-995999499997799805785348888857999945999899994999199997799824568602
Q 006497 118 RSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTG 196 (643)
Q Consensus 118 ~~i~~s~~~~~L~-sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~ 196 (643)
....|...++.|+ +--..+.|..||.++++.... .....+.++++..++.++++ +.+ .|.++|..+++.......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~--~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH--ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred ECCEEECCCCEEEEEECCCCEEEEEECCCCEEEEE--ECCCCCEEEEEECCCCEEEE-EEC-CCEEEECCCCEEEEEEEE
T ss_conf 58759899999999987899999998998959999--89998179899659988999-737-638950464513578664
Q ss_pred C----CCCEEEEEECCCCCEEEEEEC----CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEE
Q ss_conf 6----988489999599998999978----99099998899931679636898679999949999999997-99929999
Q 006497 197 H----GWDVKSVDWHPTKSLLVSGGK----DSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLY 267 (643)
Q Consensus 197 ~----~~~V~~i~~sp~~~~l~sg~~----dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iw 267 (643)
. ...++.+.+.+++++.++... .+.-.+|.+..++...... .-...+.++|+++++.++... ..+.|..|
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCCCCEEEEEECCCCEEEEEE-CCCCCCEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 0478766101357979999988742643133330576622996899865-068764024658776689851566324676
Q ss_pred ECCCC--------EEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEEC-CCC
Q ss_conf 87998--------677795068888379999069998999996899599997799965089803358664899993-999
Q 006497 268 DIRAM--------KELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWH-PIG 338 (643)
Q Consensus 268 d~~~~--------~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-~d~ 338 (643)
++... .....+.........+++.. ++++.++.-..+.|..|+- +++....+.. -...+++++|- +|.
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp-~G~~~~~i~l-P~~~~T~~~FGG~d~ 252 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDA 252 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTS
T ss_pred EECCCCCCCCCCEEEEECCCCCCCCCCCEEECC-CCCEEEEEECCCCEEEECC-CCCEEEEECC-CCCCEEEEEEECCCC
T ss_conf 453555532453578841675556663267869-9998953207884688569-9928668638-998527989828999
Q ss_pred CEEEEEE
Q ss_conf 9999997
Q 006497 339 YLLCSGS 345 (643)
Q Consensus 339 ~~L~sgs 345 (643)
+.|+..+
T Consensus 253 ~~LyvTt 259 (295)
T d2ghsa1 253 SRLLVTS 259 (295)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
T ss_conf 9999997
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=98.01 E-value=0.0004 Score=41.27 Aligned_cols=274 Identities=11% Similarity=0.071 Sum_probs=153.3
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCCC----------CE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 9899997899099990999833898703798----------88-999991799989999599949999779980578534
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH----------AI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~----------~V-~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~ 153 (643)
..|++++.++.|.-.|.++++.+-++..... .+ ..++. .+..++.+..|+.|.-.|..+++.+....
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCE--ECCEEEEEECCCEEEEEECCCCCEEECCC
T ss_conf 9999978999599996899987988779877644544322465357504--68849997389879999777895773057
Q ss_pred CCCC----CEEEEEEECCCCEEEEEE------CCCCEEEEECCCCEEEEEEECCC-------------------------
Q ss_conf 8888----857999945999899994------99919999779982456860269-------------------------
Q 006497 154 AHKE----SVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------- 198 (643)
Q Consensus 154 ~~~~----~I~~l~~s~d~~~l~s~s------~dg~I~iwdl~~~~~~~~~~~~~------------------------- 198 (643)
.... .++..-..-++ .++++. ..|.|.-+|.++++.+..+....
T Consensus 145 ~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (560)
T ss_dssp CSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred CCCCCCCEEEEEEEEEECC-CCCCCCCCEECCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6675540454320045068-510365311001355389997788627766410034556776431122345666665310
Q ss_pred -----C-CEEEEEECCCCCEEEEEEC-------------------CCCEEEEECCCCCEEEEECCCCCCE---------E
Q ss_conf -----8-8489999599998999978-------------------9909999889993167963689867---------9
Q 006497 199 -----W-DVKSVDWHPTKSLLVSGGK-------------------DSLVKLWDAKSGRELCSFHGHKNMV---------L 244 (643)
Q Consensus 199 -----~-~V~~i~~sp~~~~l~sg~~-------------------dg~I~iwd~~s~~~~~~~~~~~~~i---------~ 244 (643)
. .-..+.++++..+++.+.. ...|.-.|+++++.+..++.....+ .
T Consensus 224 ~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~ 303 (560)
T d1kv9a2 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (560)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEE
T ss_conf 02678875565521434680364478874355564246677654530368733776421588710365332345651244
Q ss_pred EEEECCCC---CEEEEEECCCCEEEEECCCCEEEEEEECCCCC------------------------------------E
Q ss_conf 99994999---99999979992999987998677795068888------------------------------------3
Q 006497 245 CVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKD------------------------------------V 285 (643)
Q Consensus 245 ~i~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~------------------------------------I 285 (643)
-+....++ ..++.+..+|.+.++|..+++.+......... -
T Consensus 304 l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w 383 (560)
T d1kv9a2 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNW 383 (560)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCS
T ss_pred EEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCCC
T ss_conf 20031179602566625765369998468882435344465443345572213210001232233550565356665456
Q ss_pred EEEEEECCCCCEEEEEECC------------------------------------CCEEEEECCCCCCEEEEECCCCCCE
Q ss_conf 7999906999899999689------------------------------------9599997799965089803358664
Q 006497 286 TALAWHPFHEEYFVSGSLD------------------------------------GSIFHWLVGHETPQVEIHNVHDNTV 329 (643)
Q Consensus 286 ~~i~~sp~~~~~l~sgs~d------------------------------------g~I~iwd~~~~~~~~~~~~~h~~~V 329 (643)
...++++ +..+++....+ |.|.-||+.+++...+.... ...
T Consensus 384 ~~~a~dp-~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~ 460 (560)
T d1kv9a2 384 HSMSFNP-GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THW 460 (560)
T ss_dssp SCCEEET-TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSC
T ss_pred CCCCCCC-CCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCC--CCC
T ss_conf 5631668-8871653510166200014666444444234667666667887666664688707788373102578--888
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 899993999999999789939999357999953221
Q 006497 330 WDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 330 ~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 365 (643)
.+-...-.+.++++++.||.++.+|.+. ++++|+.
T Consensus 461 ~gg~l~TagglVF~G~~dg~l~A~Da~t-Ge~LW~~ 495 (560)
T d1kv9a2 461 NGGTLSTAGNLVFQGTAAGQMHAYSADK-GEALWQF 495 (560)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred CCCEEEECCCEEEEECCCCCEEEEECCC-CCEEEEE
T ss_conf 7740598799899977898199999999-8582799
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.00 E-value=0.00041 Score=41.19 Aligned_cols=198 Identities=7% Similarity=-0.044 Sum_probs=68.7
Q ss_pred CEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEE-ECCCCEEEEECCCCEEEEE
Q ss_conf 889999917999899995-99949999779980578534888885799994599989999-4999199997799824568
Q 006497 116 AIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSC-SDDTTVKVWDFARCQEERS 193 (643)
Q Consensus 116 ~V~~i~~s~~~~~L~sg~-~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~-s~dg~I~iwdl~~~~~~~~ 193 (643)
.+..++|....+.|+... .++.|...+++..............+..+++...+..|+.+ ...+.|.+.++........
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 57999998589999999899991999976658728988701264207999636886888426789799880588167777
Q ss_pred EECCCCCEEEEEECCCCCEEEEEECC---CCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEEC
Q ss_conf 60269884899995999989999789---9099998899931679636898679999949999999997-9992999987
Q 006497 194 LTGHGWDVKSVDWHPTKSLLVSGGKD---SLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDI 269 (643)
Q Consensus 194 ~~~~~~~V~~i~~sp~~~~l~sg~~d---g~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~ 269 (643)
+.........+++++...+++..... ..|...++............-.....++++..++.|+.+. ..+.|...|+
T Consensus 117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~ 196 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (263)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEC
T ss_conf 12566687279992566927995348997689996678997236553035555307995047589999289999999999
Q ss_pred CCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCC
Q ss_conf 99867779506888837999906999899999689959999779996
Q 006497 270 RAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHET 316 (643)
Q Consensus 270 ~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~ 316 (643)
........+.. ......+++. ++.++++-...+.|...+...+.
T Consensus 197 ~g~~~~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~ 240 (263)
T d1npea_ 197 AQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISK 240 (263)
T ss_dssp TEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCCCEEEEECC-CCCCEEEEEE--CCEEEEEECCCCEEEEEECCCCC
T ss_conf 99976999889-9986899999--99999999999979999898995
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=98.00 E-value=0.00041 Score=41.15 Aligned_cols=274 Identities=9% Similarity=0.069 Sum_probs=148.6
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCC----------CCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 989999789909999099983389870379----------888-999991799989999599949999779980578534
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHD----------HAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~----------~~V-~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~ 153 (643)
..|++++.++.|.-+|.++++.+-.+.... ..+ ..+.+. +..++.++.|+.+.-.|.++++.+....
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCCEEEEECCCCEEEECCCCCCCEECCC
T ss_conf 99999789996999958999858786798876533334566566652387--8818997336540666162430010146
Q ss_pred CCCC---CE--EEEEEECCCCEEEEEE------CCCCEEEEECCCCEEEEEEECCC------------------------
Q ss_conf 8888---85--7999945999899994------99919999779982456860269------------------------
Q 006497 154 AHKE---SV--RDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------ 198 (643)
Q Consensus 154 ~~~~---~I--~~l~~s~d~~~l~s~s------~dg~I~iwdl~~~~~~~~~~~~~------------------------ 198 (643)
.... .+ +..-..-++ .++++. ..|.|+.+|.++++.+..+....
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~~ 234 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (573)
T ss_dssp TTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CCCCCCCEEEEECCEEEEEC-CEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 75687650786010279706-27992134455432218998568865102553104567777775432234323588775
Q ss_pred -------CCE-EEEEECCCCCEEEEEECC-------------------CCEEEEECCCCCEEEEECCCCCC---------
Q ss_conf -------884-899995999989999789-------------------90999988999316796368986---------
Q 006497 199 -------WDV-KSVDWHPTKSLLVSGGKD-------------------SLVKLWDAKSGRELCSFHGHKNM--------- 242 (643)
Q Consensus 199 -------~~V-~~i~~sp~~~~l~sg~~d-------------------g~I~iwd~~s~~~~~~~~~~~~~--------- 242 (643)
..+ ...+++++..+++....+ ..|.-.|+++++....++.....
T Consensus 235 ~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~~ 314 (573)
T d1kb0a2 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (573)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred EEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHEEECCCCCCCCCCCCCCCCE
T ss_conf 46637987623561185433815511477754441000345666666420799615500012024436751120012201
Q ss_pred EEEEEECCCC---CEEEEEECCCCEEEEECCCCEEEEEEECCCCC-----------------------------------
Q ss_conf 7999994999---99999979992999987998677795068888-----------------------------------
Q 006497 243 VLCVKWNQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKD----------------------------------- 284 (643)
Q Consensus 243 i~~i~~sp~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----------------------------------- 284 (643)
........++ ..++.++.+|.+.++|..+++.+.........
T Consensus 315 ~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~ 394 (573)
T d1kb0a2 315 MILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHN 394 (573)
T ss_dssp CEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSC
T ss_pred EEECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCC
T ss_conf 44202001797236202125553168861243442231122566434442112200000002346663378631567766
Q ss_pred EEEEEEECCCCCEEEEEECCC-------------------------------------------CEEEEECCCCCCEEEE
Q ss_conf 379999069998999996899-------------------------------------------5999977999650898
Q 006497 285 VTALAWHPFHEEYFVSGSLDG-------------------------------------------SIFHWLVGHETPQVEI 321 (643)
Q Consensus 285 I~~i~~sp~~~~~l~sgs~dg-------------------------------------------~I~iwd~~~~~~~~~~ 321 (643)
-...++++ +..+++....+. .+.-||..+++.....
T Consensus 395 w~~~a~dp-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~ 473 (573)
T d1kb0a2 395 WHPMSFNP-QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV 473 (573)
T ss_dssp SSCCEEET-TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE
T ss_pred CCCCCCCC-CCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEE
T ss_conf 65542088-76169854111542531155532355778753103553222334568877787361787578778667051
Q ss_pred ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 03358664899993999999999789939999357999953221
Q 006497 322 HNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 322 ~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 365 (643)
.... ....=..+-.+.++++++.||.++.+|.+ .++++|+.
T Consensus 474 ~~~~--p~~gg~lstagglVF~G~~dg~l~A~Da~-TGe~LW~~ 514 (573)
T d1kb0a2 474 EHVS--PWNGGTLTTAGNVVFQGTADGRLVAYHAA-TGEKLWEA 514 (573)
T ss_dssp EESS--SCCCCEEEETTTEEEEECTTSEEEEEETT-TCCEEEEE
T ss_pred CCCC--CCCCCEEEECCCEEEEECCCCEEEEEECC-CCCEEEEE
T ss_conf 6889--88776079869989997799919999999-88685799
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.99 E-value=0.00042 Score=41.09 Aligned_cols=273 Identities=10% Similarity=0.078 Sum_probs=145.9
Q ss_pred EEEEEEC-CCCEEEEEC-CCCCEEEEECCCCC-----------CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEE
Q ss_conf 8999978-990999909-99833898703798-----------8899999179998999959994999977998057853
Q 006497 86 RLITGSQ-SGEFTLWNG-QSFNFEMILQAHDH-----------AIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANK 152 (643)
Q Consensus 86 ~L~tgs~-dg~I~iwd~-~~~~~~~~l~~h~~-----------~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~ 152 (643)
.|++++. ++.|...|. ++++.+-+++.... .-..+++. +..|+.++.|+.+.-.|.++++.....
T Consensus 64 ~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~ 141 (571)
T d2ad6a1 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE--CCEEEEEECCCCEEEEEHHHHHHHCCC
T ss_conf 999942879959999489998668883588886544200247688862650--886999917975782100211220234
Q ss_pred CCCC----CCEEEEEEECCCCEEEEEE------CCCCEEEEECCCCEEEEEEECCC------------------------
Q ss_conf 4888----8857999945999899994------99919999779982456860269------------------------
Q 006497 153 SAHK----ESVRDLSFCRTDLKFCSCS------DDTTVKVWDFARCQEERSLTGHG------------------------ 198 (643)
Q Consensus 153 ~~~~----~~I~~l~~s~d~~~l~s~s------~dg~I~iwdl~~~~~~~~~~~~~------------------------ 198 (643)
.... ..++.--..-++ .++.+. .++.|+-+|+++++.+..+....
T Consensus 142 ~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (571)
T d2ad6a1 142 EVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLG 220 (571)
T ss_dssp ECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHH
T ss_pred CCCCCCCCCCEEECCEEECC-EEEEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44554432414536757588-58885023442346747999888985889970468864445555445443346755556
Q ss_pred -------------CCE-EEEEECCCCCEEEEEEC----------------CCCEEEEECCCCCEEEEECCCCCCE-----
Q ss_conf -------------884-89999599998999978----------------9909999889993167963689867-----
Q 006497 199 -------------WDV-KSVDWHPTKSLLVSGGK----------------DSLVKLWDAKSGRELCSFHGHKNMV----- 243 (643)
Q Consensus 199 -------------~~V-~~i~~sp~~~~l~sg~~----------------dg~I~iwd~~s~~~~~~~~~~~~~i----- 243 (643)
..+ ...+++++..+++.+.. ...+...|+++++.+..+......+
T Consensus 221 ~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~ 300 (571)
T d2ad6a1 221 TKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAG 300 (571)
T ss_dssp HHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHEECCCCCCCCCCCCCC
T ss_conf 64567763143797520463305200834564034567522345663355653254412550110012456763314656
Q ss_pred ----EEEEECCCCC---EEEEEECCCCEEEEECCCCEEEEEEECCCC--------------------------C------
Q ss_conf ----9999949999---999997999299998799867779506888--------------------------8------
Q 006497 244 ----LCVKWNQNGN---WVLTASKDQIIKLYDIRAMKELESFRGHRK--------------------------D------ 284 (643)
Q Consensus 244 ----~~i~~sp~g~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--------------------------~------ 284 (643)
....+..+++ .++..+.+|.+.++|..+++.+...+.... .
T Consensus 301 ~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p 380 (571)
T d2ad6a1 301 VNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICP 380 (571)
T ss_dssp CCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESS
T ss_pred CCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 55641145511576654046326564499985689837655546775322345564446322376433345667257774
Q ss_pred -------EEEEEEECCCCCEEEEEECC-------------------------------------CCEEEEECCCCCCEEE
Q ss_conf -------37999906999899999689-------------------------------------9599997799965089
Q 006497 285 -------VTALAWHPFHEEYFVSGSLD-------------------------------------GSIFHWLVGHETPQVE 320 (643)
Q Consensus 285 -------I~~i~~sp~~~~~l~sgs~d-------------------------------------g~I~iwd~~~~~~~~~ 320 (643)
-...+++| +..+++....+ |.|..+|..+++...+
T Consensus 381 ~~~Gg~~w~~~a~dP-~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~ 459 (571)
T d2ad6a1 381 SAMGFHNQGVDSYDP-ESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWT 459 (571)
T ss_dssp CTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEE
T ss_pred CCCCCCCCCCCEECC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEECCCCCCEEEE
T ss_conf 022243466520778-8862897655344334300245667753215630331466776667756178853677846427
Q ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 803358664899993999999999789939999357999953221
Q 006497 321 IHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 321 ~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 365 (643)
..... ...+-...-.+.++++++.|+.++.+|.++ +++.|+.
T Consensus 460 ~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~Da~t-Ge~lW~~ 501 (571)
T d2ad6a1 460 KWEKF--AAWGGTLYTKGGLVWYATLDGYLKALDNKD-GKELWNF 501 (571)
T ss_dssp EEESS--CCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred CCCCC--CCCCCEEEECCCEEEEECCCCEEEEEECCC-CCEEEEE
T ss_conf 67899--987560596699799977899699999999-8687899
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.99 E-value=0.00042 Score=41.09 Aligned_cols=259 Identities=10% Similarity=0.021 Sum_probs=151.1
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEEECCCCCEEEEEE------CCCCEEEEECCCCCEEEEEC
Q ss_conf 9989999789909999099983389870379----8889999917999899995------99949999779980578534
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~~i~~s~~~~~L~sg~------~dg~I~iwd~~~~~~~~~~~ 153 (643)
+..|+.++.|+.+.-.|.++++.+......+ ..++.--...+ +.++++. .+|.|+-+|.++++.+....
T Consensus 115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 193 (571)
T d2ad6a1 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCCEEEEEHHHHHHHCCCCCCCCCCCCCEEECCEEEC-CEEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 8869999179757821002112202344455443241453675758-858885023442346747999888985889970
Q ss_pred CCC-------------------------------------CCE-EEEEEECCCCEEEEEEC----------------CCC
Q ss_conf 888-------------------------------------885-79999459998999949----------------991
Q 006497 154 AHK-------------------------------------ESV-RDLSFCRTDLKFCSCSD----------------DTT 179 (643)
Q Consensus 154 ~~~-------------------------------------~~I-~~l~~s~d~~~l~s~s~----------------dg~ 179 (643)
... ..+ ...++.++...++.+.. ...
T Consensus 194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s 273 (571)
T d2ad6a1 194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT 273 (571)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 46886444555544544334675555664567763143797520463305200834564034567522345663355653
Q ss_pred EEEEECCCCEEEEEEECCCCCEE---------EEEECCCCC---EEEEEECCCCEEEEECCCCCEEEEECCCC--C----
Q ss_conf 99997799824568602698848---------999959999---89999789909999889993167963689--8----
Q 006497 180 VKVWDFARCQEERSLTGHGWDVK---------SVDWHPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK--N---- 241 (643)
Q Consensus 180 I~iwdl~~~~~~~~~~~~~~~V~---------~i~~sp~~~---~l~sg~~dg~I~iwd~~s~~~~~~~~~~~--~---- 241 (643)
+...|+++++.+..+......+. ...+..+++ .++..+.+|.++++|.++++.+...+... .
T Consensus 274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~ 353 (571)
T d2ad6a1 274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK 353 (571)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred EEEEECCCHHHEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCC
T ss_conf 25441255011001245676331465655641145511576654046326564499985689837655546775322345
Q ss_pred ----------------------CE-----------EEEEECCCCCEEEEEECC---------------------------
Q ss_conf ----------------------67-----------999994999999999799---------------------------
Q 006497 242 ----------------------MV-----------LCVKWNQNGNWVLTASKD--------------------------- 261 (643)
Q Consensus 242 ----------------------~i-----------~~i~~sp~g~~l~s~s~d--------------------------- 261 (643)
.. ...+++++..++++...+
T Consensus 354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (571)
T d2ad6a1 354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP 433 (571)
T ss_dssp ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECC
T ss_conf 56444632237643334566725777402224346652077888628976553443343002456677532156303314
Q ss_pred ----------CCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEE
Q ss_conf ----------9299998799867779506888837999906999899999689959999779996508980335866489
Q 006497 262 ----------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWD 331 (643)
Q Consensus 262 ----------g~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 331 (643)
|.|.-+|+++++.+.+............ .. .+.++++++.|+.++.+|.++++.+.+........-.-
T Consensus 434 ~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l-~T-agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P 511 (571)
T d2ad6a1 434 GPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTL-YT-KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP 511 (571)
T ss_dssp CTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCE-EE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred CCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCEE-EE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCEECC
T ss_conf 66776667756178853677846427678999875605-96-69979997789969999999986878998999965156
Q ss_pred EEECCCCC-EEEEEE
Q ss_conf 99939999-999997
Q 006497 332 LAWHPIGY-LLCSGS 345 (643)
Q Consensus 332 l~~s~d~~-~L~sgs 345 (643)
+.|..|++ +|++..
T Consensus 512 ~ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 512 MTYSFKGKQYIGSMY 526 (571)
T ss_dssp EEEEETTEEEEEEEE
T ss_pred EEEEECCEEEEEEEE
T ss_conf 489889999999990
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.97 E-value=0.00046 Score=40.82 Aligned_cols=262 Identities=8% Similarity=0.040 Sum_probs=152.1
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCCCC----EEEEEECCCCCEEEEEEC------CCCEEEEECCCCCEEEEEC
Q ss_conf 998999978990999909998338987037988----899999179998999959------9949999779980578534
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHA----IRSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~----V~~i~~s~~~~~L~sg~~------dg~I~iwd~~~~~~~~~~~ 153 (643)
+..++.+..++.|.-.|..+++.+......... ++..-.. .+..++++.. .|.|.-+|.++++.+..+.
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 195 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCCEEECCCCCCCCCCEEEEEEEEE-ECCCCCCCCCCEECCCCCEEEEEECCCCEEEEEEE
T ss_conf 88499973898799997778957730576675540454320045-06851036531100135538999778862776641
Q ss_pred CCC------------------------------CC-EEEEEEECCCCEEEEEEC-------------------CCCEEEE
Q ss_conf 888------------------------------88-579999459998999949-------------------9919999
Q 006497 154 AHK------------------------------ES-VRDLSFCRTDLKFCSCSD-------------------DTTVKVW 183 (643)
Q Consensus 154 ~~~------------------------------~~-I~~l~~s~d~~~l~s~s~-------------------dg~I~iw 183 (643)
... .. -..+++.+...+++.+.. ...|...
T Consensus 196 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAl 275 (560)
T d1kv9a2 196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI 275 (560)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 00345567764311223456666653100267887556552143468036447887435556424667765453036873
Q ss_pred ECCCCEEEEEEECCCCCEE---------EEEECCCC---CEEEEEECCCCEEEEECCCCCEEEEECCCC-CCE-------
Q ss_conf 7799824568602698848---------99995999---989999789909999889993167963689-867-------
Q 006497 184 DFARCQEERSLTGHGWDVK---------SVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHK-NMV------- 243 (643)
Q Consensus 184 dl~~~~~~~~~~~~~~~V~---------~i~~sp~~---~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~-~~i------- 243 (643)
|+++++.+..+......+. -+.+..++ ..++.+..+|.++++|.++++.+....... ...
T Consensus 276 d~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 37764215887103653323456512442003117960256662576536999846888243534446544334557221
Q ss_pred ----------------------------EEEEECCCCCEEEEEEC-----------------------------------
Q ss_conf ----------------------------99999499999999979-----------------------------------
Q 006497 244 ----------------------------LCVKWNQNGNWVLTASK----------------------------------- 260 (643)
Q Consensus 244 ----------------------------~~i~~sp~g~~l~s~s~----------------------------------- 260 (643)
...+++++..++++...
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 32100012322335505653566654565631668887165351016620001466644444423466766666788766
Q ss_pred -CCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCC
Q ss_conf -9929999879986777950688883799990699989999968995999977999650898033586648999939999
Q 006497 261 -DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGY 339 (643)
Q Consensus 261 -dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~ 339 (643)
.|.|.-||+.+++.+.++..... ...-...- .+.++++++.||.++.+|.++++.+.+........-.-+.+..+++
T Consensus 436 ~~G~l~A~D~~tGk~~W~~~~~~~-~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 436 VSGALLAWDPVKQKAAWKVPYPTH-WNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred CCCCEEEEECCCCEEEEECCCCCC-CCCCEEEE-CCCEEEEECCCCCEEEEECCCCCEEEEEECCCCCCCCCEEEEECCE
T ss_conf 666468870778837310257888-87740598-7998999778981999999998582799899995516779998999
Q ss_pred -EEEEEECCC
Q ss_conf -999997899
Q 006497 340 -LLCSGSNDH 348 (643)
Q Consensus 340 -~L~sgs~Dg 348 (643)
+|++....|
T Consensus 514 qyv~v~aG~g 523 (560)
T d1kv9a2 514 QYVAIMAGWG 523 (560)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEECCC
T ss_conf 9999991778
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.89 E-value=0.00063 Score=39.78 Aligned_cols=233 Identities=13% Similarity=0.120 Sum_probs=117.9
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEE-EEEECCCCEEEEEEC------CCCEEEEECCCCEEEEEEE
Q ss_conf 989999599949999779980578534888----88579-999459998999949------9919999779982456860
Q 006497 127 NWMVSGDDGGAIKYWQNNMNNVKANKSAHK----ESVRD-LSFCRTDLKFCSCSD------DTTVKVWDFARCQEERSLT 195 (643)
Q Consensus 127 ~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~----~~I~~-l~~s~d~~~l~s~s~------dg~I~iwdl~~~~~~~~~~ 195 (643)
.+++.++.|+.|.-.|.++++.+..+.... ..++. -.+. ++ .++++.. .|.|+-+|+++++.+..+.
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~-~~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCEE-CC-EEEEEECCCCCCCCCCEEEEECCCCCEEEEEE
T ss_conf 29999807987685436568410231014655564224588177-77-58993023444335732898878885778865
Q ss_pred CCC-------------------------------------C-CEEEEEECCCCCEEEEEECC----------------CC
Q ss_conf 269-------------------------------------8-84899995999989999789----------------90
Q 006497 196 GHG-------------------------------------W-DVKSVDWHPTKSLLVSGGKD----------------SL 221 (643)
Q Consensus 196 ~~~-------------------------------------~-~V~~i~~sp~~~~l~sg~~d----------------g~ 221 (643)
... . .-..+++++...+++.+..+ ..
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 35886554555445433333454554666678873334787422562215677725405645556520235653334443
Q ss_pred EEEEECCCCCEEEEECCCCC---------CEEEEEE-CCCC---CEEEEEECCCCEEEEECCCCEEEEEEECCCC--C--
Q ss_conf 99998899931679636898---------6799999-4999---9999997999299998799867779506888--8--
Q 006497 222 VKLWDAKSGRELCSFHGHKN---------MVLCVKW-NQNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRK--D-- 284 (643)
Q Consensus 222 I~iwd~~s~~~~~~~~~~~~---------~i~~i~~-sp~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~--~-- 284 (643)
|.-.|+++++.+..+..... ....+.. ..++ ..++....+|.+.++|..+++.+...+.... .
T Consensus 280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~ 359 (596)
T d1w6sa_ 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (596)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred CCCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEECCCCCCCCCCC
T ss_conf 01026355001001240302565776542106531033335553210014654322540677882554014466565445
Q ss_pred -----------------------------------EEEEEEECCCCCEEEEEEC--------------------------
Q ss_conf -----------------------------------3799990699989999968--------------------------
Q 006497 285 -----------------------------------VTALAWHPFHEEYFVSGSL-------------------------- 303 (643)
Q Consensus 285 -----------------------------------I~~i~~sp~~~~~l~sgs~-------------------------- 303 (643)
-...++++ ...+++....
T Consensus 360 ~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp-~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (596)
T d1w6sa_ 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP-KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (596)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET-TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC-CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 4211245321274102357765535741544434467655477-775597235334321354345554565311442320
Q ss_pred -------------CCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf -------------99599997799965089803358664899993999999999789939999357999953221
Q 006497 304 -------------DGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 304 -------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 365 (643)
.|.|.-||..+++...+... ...+.+-..+-.+.+++.++.||.++.+|.++ ++.+|+.
T Consensus 439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~T-Ge~LW~~ 510 (596)
T d1w6sa_ 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDT-GDLLWKF 510 (596)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTT-CCEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEECCCCC--CCCCCCCEEEECCCEEEEECCCCEEEEEECCC-CCEEEEE
T ss_conf 247566745578855389980788856233278--88874414686699799978999599999999-8483699
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.88 E-value=0.00066 Score=39.65 Aligned_cols=258 Identities=9% Similarity=0.025 Sum_probs=141.9
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCCC---CE--EEEEECCCCCEEEEEE------CCCCEEEEECCCCCEEEEEC
Q ss_conf 9899997899099990999833898703798---88--9999917999899995------99949999779980578534
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHDH---AI--RSMVWSHNDNWMVSGD------DGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~---~V--~~i~~s~~~~~L~sg~------~dg~I~iwd~~~~~~~~~~~ 153 (643)
..++.++.++.+.-.|.++++.+........ .+ +..-.. .+..++++. ..|.|+.+|.++++++..+.
T Consensus 129 ~~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~ 207 (573)
T d1kb0a2 129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWF 207 (573)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEECCCCEEEECCCCCCCEECCCCCCCCCCEEEEECCEEE-EECCEEEEECCCCCCCCCEEEEEECCCCCCEEEEE
T ss_conf 81899733654066616243001014675687650786010279-70627992134455432218998568865102553
Q ss_pred CCC-------------------------------CCE-EEEEEECCCCEEEEEEC-------------------CCCEEE
Q ss_conf 888-------------------------------885-79999459998999949-------------------991999
Q 006497 154 AHK-------------------------------ESV-RDLSFCRTDLKFCSCSD-------------------DTTVKV 182 (643)
Q Consensus 154 ~~~-------------------------------~~I-~~l~~s~d~~~l~s~s~-------------------dg~I~i 182 (643)
... ..+ ...++.++...++.... ...|..
T Consensus 208 t~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvA 287 (573)
T d1kb0a2 208 SVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVA 287 (573)
T ss_dssp SSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEECHHHCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEE
T ss_conf 10456777777543223432358877546637987623561185433815511477754441000345666666420799
Q ss_pred EECCCCEEEEEEECCCCCE---------EEEEECCCC---CEEEEEECCCCEEEEECCCCCEEEEECCCCCC--------
Q ss_conf 9779982456860269884---------899995999---98999978990999988999316796368986--------
Q 006497 183 WDFARCQEERSLTGHGWDV---------KSVDWHPTK---SLLVSGGKDSLVKLWDAKSGRELCSFHGHKNM-------- 242 (643)
Q Consensus 183 wdl~~~~~~~~~~~~~~~V---------~~i~~sp~~---~~l~sg~~dg~I~iwd~~s~~~~~~~~~~~~~-------- 242 (643)
.|+++++....+......+ .......++ ..++.+..+|.++++|.++++.+.........
T Consensus 288 ld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~ 367 (573)
T d1kb0a2 288 LDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKH 367 (573)
T ss_dssp ECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTT
T ss_pred ECCCCHHEEECCCCCCCCCCCCCCCCEEEECCEECCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 61550001202443675112001220144202001797236202125553168861243442231122566434442112
Q ss_pred ---------------------------EEEEEECCCCCEEEEEECC----------------------------------
Q ss_conf ---------------------------7999994999999999799----------------------------------
Q 006497 243 ---------------------------VLCVKWNQNGNWVLTASKD---------------------------------- 261 (643)
Q Consensus 243 ---------------------------i~~i~~sp~g~~l~s~s~d---------------------------------- 261 (643)
-...+++++..++++...+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (573)
T d1kb0a2 368 GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFN 447 (573)
T ss_dssp SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEEC
T ss_pred CCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 20000000234666337863156776665542088761698541115425311555323557787531035532223345
Q ss_pred ---------CCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEE
Q ss_conf ---------92999987998677795068888379999069998999996899599997799965089803358664899
Q 006497 262 ---------QIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDL 332 (643)
Q Consensus 262 ---------g~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 332 (643)
|.|.-||+.+++.+..+......... ..+. .+.++++++.|+.++.+|.++++.+.++.......-.-+
T Consensus 448 ~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg-~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ 525 (573)
T d1kb0a2 448 AEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGG-TLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS 525 (573)
T ss_dssp SSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCC-EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred CCCCCCCCCCCEEEECCCCCCEEEEECCCCCCCCC-EEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCCCCE
T ss_conf 68877787361787578778667051688988776-0798-699899977999199999998868579989899451677
Q ss_pred EECCCCC-EEEEEE
Q ss_conf 9939999-999997
Q 006497 333 AWHPIGY-LLCSGS 345 (643)
Q Consensus 333 ~~s~d~~-~L~sgs 345 (643)
.|..+++ +|+..+
T Consensus 526 ty~~~GkQYv~v~~ 539 (573)
T d1kb0a2 526 TYMVDGRQYVSVAV 539 (573)
T ss_dssp EEEETTEEEEEEEE
T ss_pred EEEECCEEEEEEEE
T ss_conf 99989999999993
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.77 E-value=0.00097 Score=38.44 Aligned_cols=258 Identities=9% Similarity=0.005 Sum_probs=151.4
Q ss_pred CEEEEEECCCCEEEEECCCCCEEEEECCCC----CCEEEEEECCCCCEEEEEEC------CCCEEEEECCCCCEEEEECC
Q ss_conf 989999789909999099983389870379----88899999179998999959------99499997799805785348
Q 006497 85 RRLITGSQSGEFTLWNGQSFNFEMILQAHD----HAIRSMVWSHNDNWMVSGDD------GGAIKYWQNNMNNVKANKSA 154 (643)
Q Consensus 85 ~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~----~~V~~i~~s~~~~~L~sg~~------dg~I~iwd~~~~~~~~~~~~ 154 (643)
.+|+.++.|+.|.-.|.++++.+..+...+ ..++.--.. .++.++++.. .|.|+-+|.++++++-.+..
T Consensus 122 ~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v-~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 122 ALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEEECCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCE-ECCEEEEEECCCCCCCCCCEEEEECCCCCEEEEEEC
T ss_conf 2999980798768543656841023101465556422458817-777589930234443357328988788857788653
Q ss_pred CC--------------------------------------CCEEEEEEECCCCEEEEEEC----------------CCCE
Q ss_conf 88--------------------------------------88579999459998999949----------------9919
Q 006497 155 HK--------------------------------------ESVRDLSFCRTDLKFCSCSD----------------DTTV 180 (643)
Q Consensus 155 ~~--------------------------------------~~I~~l~~s~d~~~l~s~s~----------------dg~I 180 (643)
.. ..-..+++.+....++.+.. ...|
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 58865545554454333334545546666788733347874225622156777254056455565202356533344430
Q ss_pred EEEECCCCEEEEEEECCCC---------CEEEEEE-CCCCC---EEEEEECCCCEEEEECCCCCEEEEECCCC--CC---
Q ss_conf 9997799824568602698---------8489999-59999---89999789909999889993167963689--86---
Q 006497 181 KVWDFARCQEERSLTGHGW---------DVKSVDW-HPTKS---LLVSGGKDSLVKLWDAKSGRELCSFHGHK--NM--- 242 (643)
Q Consensus 181 ~iwdl~~~~~~~~~~~~~~---------~V~~i~~-sp~~~---~l~sg~~dg~I~iwd~~s~~~~~~~~~~~--~~--- 242 (643)
...|+++++.+..+..... ....+.. ..+++ .++....+|.++++|.++++.+...+... ..
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~ 360 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS 360 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCEEEEECCCCCCCCCCCEECCCCCCCEEEECCCCCCEEEECCCCCCCCCCCC
T ss_conf 10263550010012403025657765421065310333355532100146543225406778825540144665654454
Q ss_pred ---------------------E-------------EEEEECCCCCEEEEEEC----------------------------
Q ss_conf ---------------------7-------------99999499999999979----------------------------
Q 006497 243 ---------------------V-------------LCVKWNQNGNWVLTASK---------------------------- 260 (643)
Q Consensus 243 ---------------------i-------------~~i~~sp~g~~l~s~s~---------------------------- 260 (643)
. ...+++++..++++...
T Consensus 361 ~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 440 (596)
T d1w6sa_ 361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP 440 (596)
T ss_dssp ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21124532127410235776553574154443446765547777559723533432135434555456531144232024
Q ss_pred -----------CCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCE
Q ss_conf -----------992999987998677795068888379999069998999996899599997799965089803358664
Q 006497 261 -----------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTV 329 (643)
Q Consensus 261 -----------dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 329 (643)
.|.|.-||+.+++.+...... ..+..-..+. .+.+++.++.||.++.+|.++++.+.++.......-
T Consensus 441 ~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a 518 (596)
T d1w6sa_ 441 GPKGDRQNYEGLGQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIG 518 (596)
T ss_dssp CTTSBTTTTBCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCEECCCCCC-CCCCCCEEEE-CCCEEEEECCCCEEEEEECCCCCEEEEEECCCCCCC
T ss_conf 75667455788553899807888562332788-8874414686-699799978999599999999848369989999540
Q ss_pred EEEEECCCCC-EEEEEE
Q ss_conf 8999939999-999997
Q 006497 330 WDLAWHPIGY-LLCSGS 345 (643)
Q Consensus 330 ~~l~~s~d~~-~L~sgs 345 (643)
.-+.|..|++ +|+...
T Consensus 519 ~P~tY~~dGkQYvav~~ 535 (596)
T d1w6sa_ 519 YPMTYTHKGTQYVAIYY 535 (596)
T ss_dssp CCEEEEETTEEEEEEEE
T ss_pred CCEEEEECCEEEEEEEE
T ss_conf 77689989999999993
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=0.0016 Score=36.77 Aligned_cols=203 Identities=7% Similarity=-0.023 Sum_probs=91.0
Q ss_pred CEEEEEECCCCCEEEEEE-CCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEE-EEECCCCEEEEECCCCCEEEE
Q ss_conf 769999938999899997-899099990999833898703798889999917999899-995999499997799805785
Q 006497 74 SINRVLWTPTGRRLITGS-QSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMV-SGDDGGAIKYWQNNMNNVKAN 151 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs-~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~-sg~~dg~I~iwd~~~~~~~~~ 151 (643)
.+..++|....+.|+... .++.|+..++........+......+.++++..-++.|+ +-...+.|.+.+++.......
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l 116 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred CEEEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 57999998589999999899991999976658728988701264207999636886888426789799880588167777
Q ss_pred ECCCCCCEEEEEEECCCCEEEEEECC-C--CEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEE-CCCCEEEEEC
Q ss_conf 34888885799994599989999499-9--199997799824568602698848999959999899997-8990999988
Q 006497 152 KSAHKESVRDLSFCRTDLKFCSCSDD-T--TVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGG-KDSLVKLWDA 227 (643)
Q Consensus 152 ~~~~~~~I~~l~~s~d~~~l~s~s~d-g--~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~-~dg~I~iwd~ 227 (643)
..........+++.+...+++..... + .|...++............-.....++++..++.|..+. ..+.|...|+
T Consensus 117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~ 196 (263)
T d1npea_ 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP 196 (263)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ECCCCCCCCEEEEECCCCCEEEEECCCCCCEEEEECCCCCCCEEEEEECCCCCCEEEEEECCCEEEEEECCCCEEEEEEC
T ss_conf 12566687279992566927995348997689996678997236553035555307995047589999289999999999
Q ss_pred CCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEEEEEE
Q ss_conf 99931679636898679999949999999997-99929999879986777950
Q 006497 228 KSGRELCSFHGHKNMVLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 228 ~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~~~~~ 279 (643)
+.......+.+.. ....+++. +.+|+... ..+.|...|..+++.+..+.
T Consensus 197 ~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 197 AQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEECCCC-CCEEEEEE--CCEEEEEECCCCEEEEEECCCCCCCEEEC
T ss_conf 9997699988999-86899999--99999999999979999898995106989
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=0.0026 Score=35.27 Aligned_cols=119 Identities=12% Similarity=0.033 Sum_probs=40.3
Q ss_pred CEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEE-CCCCEEEEECCCC----CEEEEECCCCCCEEEEEEECCCC
Q ss_conf 099990999833898703798889999917999899995-9994999977998----05785348888857999945999
Q 006497 95 EFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGD-DGGAIKYWQNNMN----NVKANKSAHKESVRDLSFCRTDL 169 (643)
Q Consensus 95 ~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~-~dg~I~iwd~~~~----~~~~~~~~~~~~I~~l~~s~d~~ 169 (643)
.|+..++++.+....+. ....+..+.|....+.|+... .++.|...+++.. ............+..+++...+.
T Consensus 11 ~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 11 EVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp SEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTT
T ss_pred EEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 18999899985266417-99855999998089999999997997999993578887614899848999854689864265
Q ss_pred EEEEE-ECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 89999-4999199997799824568602698848999959999899
Q 006497 170 KFCSC-SDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 170 ~l~s~-s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~ 214 (643)
.|..+ ...+.|.+.++........+.........+++++...++.
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly 135 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 135 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEE
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEE
T ss_conf 2899954899998576489537888727998833699980039488
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.19 E-value=0.0048 Score=33.28 Aligned_cols=270 Identities=10% Similarity=0.038 Sum_probs=132.7
Q ss_pred CEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEEE--EE-CCCCCCEEEEEECCCCCEEEEEECC-CCE
Q ss_conf 769999938999899997899-----------09999099983389--87-0379888999991799989999599-949
Q 006497 74 SINRVLWTPTGRRLITGSQSG-----------EFTLWNGQSFNFEM--IL-QAHDHAIRSMVWSHNDNWMVSGDDG-GAI 138 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg-----------~I~iwd~~~~~~~~--~l-~~h~~~V~~i~~s~~~~~L~sg~~d-g~I 138 (643)
.+...+...+++.++.|+.+. .+.+||..+.+... .. ..+.......++..++++++.++.+ ..+
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~ 100 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 100 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCE
T ss_conf 01789992599999998405766678877606899998888968666778987445256899946886898636888621
Q ss_pred EEEECCCCCEEEEECC-CCCCEEEEEEECCCCEEEEEECC------CCEEEEECCCCEEEEEEEC---------CC----
Q ss_conf 9997799805785348-88885799994599989999499------9199997799824568602---------69----
Q 006497 139 KYWQNNMNNVKANKSA-HKESVRDLSFCRTDLKFCSCSDD------TTVKVWDFARCQEERSLTG---------HG---- 198 (643)
Q Consensus 139 ~iwd~~~~~~~~~~~~-~~~~I~~l~~s~d~~~l~s~s~d------g~I~iwdl~~~~~~~~~~~---------~~---- 198 (643)
.+||..+..-...-.. ....-...+...|++.++.++.+ ..+.+||..+.+-...-.. +.
T Consensus 101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~ 180 (387)
T d1k3ia3 101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR 180 (387)
T ss_dssp EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEEECCCCCCCCCCCCCCCCEEE
T ss_conf 67567557442156566421013035531782665213663335432056634888955115887644311346651365
Q ss_pred -CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC--------CCCCCEEEEEE-CCCCCEEEEEECCC------
Q ss_conf -884899995999989999789909999889993167963--------68986799999-49999999997999------
Q 006497 199 -WDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH--------GHKNMVLCVKW-NQNGNWVLTASKDQ------ 262 (643)
Q Consensus 199 -~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~--------~~~~~i~~i~~-sp~g~~l~s~s~dg------ 262 (643)
.....+....+++.++.+..++.+.++|..+........ .....-.++.+ ..++++++.++...
T Consensus 181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred CCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 04226999707987787468677478148666717316655667665763222637886135882478875367887752
Q ss_pred --CEEEEECCCC---EEEEEEEC---CCCCEEEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCCEEEEEC
Q ss_conf --2999987998---67779506---8888379999069998999996899-----------599997799965089803
Q 006497 263 --IIKLYDIRAM---KELESFRG---HRKDVTALAWHPFHEEYFVSGSLDG-----------SIFHWLVGHETPQVEIHN 323 (643)
Q Consensus 263 --~I~iwd~~~~---~~~~~~~~---~~~~I~~i~~sp~~~~~l~sgs~dg-----------~I~iwd~~~~~~~~~~~~ 323 (643)
...+.++... ........ ....-.+....+ ++++++.|+.+. .+.+||....+ .....
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~-dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~--W~~~~ 337 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDT--FYKQN 337 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTE--EEECC
T ss_pred CCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECC-CCEEEEECCCCCCCCCCCCCEECEEEEEECCCCE--EEECC
T ss_conf 10000011111356788406036656654343356605-8749998884567668899470107989799991--88788
Q ss_pred CCC-CC--EEEEEECCCCCEEEEEEC
Q ss_conf 358-66--489999399999999978
Q 006497 324 VHD-NT--VWDLAWHPIGYLLCSGSN 346 (643)
Q Consensus 324 ~h~-~~--V~~l~~s~d~~~L~sgs~ 346 (643)
... .. -....+.+|+++++.|+.
T Consensus 338 ~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 338 PNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 99975531279999889999999698
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.18 E-value=0.0049 Score=33.24 Aligned_cols=68 Identities=10% Similarity=0.143 Sum_probs=29.3
Q ss_pred EEEEEECCCCCEEEEEE-CCCCEEEEECCCCEEE------------EEEECCCCCEEEEEEECCCCCEEEEEECCCCEEE
Q ss_conf 79999949999999997-9992999987998677------------7950688883799990699989999968995999
Q 006497 243 VLCVKWNQNGNWVLTAS-KDQIIKLYDIRAMKEL------------ESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFH 309 (643)
Q Consensus 243 i~~i~~sp~g~~l~s~s-~dg~I~iwd~~~~~~~------------~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~i 309 (643)
...+.++|||+++++++ .+.++.++|+++...+ .+.. ..-.-..-+|+. .++...+.-.|..|.-
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht~fd~-~g~aytslfids~v~k 354 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVK 354 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred CCCEEECCCCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCCEEEECC-CCCCCCCCCCCC-CCEEEEEEECCCEEEE
T ss_conf 77338899997899938858957999822535665046884521796113-576766203389-8429998612316999
Q ss_pred EEC
Q ss_conf 977
Q 006497 310 WLV 312 (643)
Q Consensus 310 wd~ 312 (643)
|++
T Consensus 355 w~~ 357 (459)
T d1fwxa2 355 WNI 357 (459)
T ss_dssp EEH
T ss_pred EEC
T ss_conf 734
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.10 E-value=0.0058 Score=32.72 Aligned_cols=253 Identities=10% Similarity=0.067 Sum_probs=153.3
Q ss_pred CCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEE
Q ss_conf 99099990999833898703798889999917999899995999499997799805785348888857999945999899
Q 006497 93 SGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFC 172 (643)
Q Consensus 93 dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~ 172 (643)
...|.|.|+.+........- ...+...+|..+.|+.-+ ...+.++|+++++.+....-. +.|.--.|..+ +.|+
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi---~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~ 117 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVA 117 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC---CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEE
T ss_pred CCEEEEEECCCCCCCEECCC---CHHHHHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEECC-CCCEEEEECCC-CEEE
T ss_conf 84399998899876331443---616653088875799962-886899844682211158768-88579994479-8899
Q ss_pred EEECCCCEEEEECCCC-EEEEEEECCC----CCEEEEEECCCCCEEEEEE-------CCCCEEEEECCCCCEEEEECCCC
Q ss_conf 9949991999977998-2456860269----8848999959999899997-------89909999889993167963689
Q 006497 173 SCSDDTTVKVWDFARC-QEERSLTGHG----WDVKSVDWHPTKSLLVSGG-------KDSLVKLWDAKSGRELCSFHGHK 240 (643)
Q Consensus 173 s~s~dg~I~iwdl~~~-~~~~~~~~~~----~~V~~i~~sp~~~~l~sg~-------~dg~I~iwd~~s~~~~~~~~~~~ 240 (643)
..+ +..|+-|+++.. ...+.+..|. ..|..-..+++.++++..+ -.|.+.+|..+. +.-..+++|.
T Consensus 118 lVT-~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGha 195 (327)
T d1utca2 118 LVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHA 195 (327)
T ss_dssp EEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSE
T ss_pred EEC-CCCEEEECCCCCCCCHHHHHHCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECC-CCCCCCCCEE
T ss_conf 991-88169973569998526623210124863899898999988999957137883058888998022-8675232034
Q ss_pred CCEEEEEECCCC---CEEEEEE---CCCCEEEEECCCCE---E-----EEEEE----CCCCCEEEEEEECCCCCEEEEEE
Q ss_conf 867999994999---9999997---99929999879986---7-----77950----68888379999069998999996
Q 006497 241 NMVLCVKWNQNG---NWVLTAS---KDQIIKLYDIRAMK---E-----LESFR----GHRKDVTALAWHPFHEEYFVSGS 302 (643)
Q Consensus 241 ~~i~~i~~sp~g---~~l~s~s---~dg~I~iwd~~~~~---~-----~~~~~----~~~~~I~~i~~sp~~~~~l~sgs 302 (643)
.....+.+..+. .+++.+. ..+++.|.++.... . ...+. ...+--.++..+. ...+++..+
T Consensus 196 a~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviT 274 (327)
T d1utca2 196 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT 274 (327)
T ss_dssp EEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEE
T ss_pred EEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEC-CCCEEEEEE
T ss_conf 6568887079988730999998789874799998688755788875326887779634688477999643-379999996
Q ss_pred CCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 89959999779996508980335866489999399999999978993999935
Q 006497 303 LDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCR 355 (643)
Q Consensus 303 ~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~ 355 (643)
.-|.|++||++++..+..-.- ..+.|...+-+.+..-++....+|.|..-.+
T Consensus 275 K~G~i~lyDleTgt~i~~nRI-s~~~iF~~a~~~~~~Gi~~VNr~GqVl~vsv 326 (327)
T d1utca2 275 KYGYIHLYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCV 326 (327)
T ss_dssp TTSEEEEEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEC-CCCCEEEECCCCCCCEEEEECCCCEEEEEEE
T ss_conf 675899997566628999404-7884489626788860899878976999992
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.08 E-value=0.0061 Score=32.54 Aligned_cols=215 Identities=13% Similarity=0.059 Sum_probs=110.4
Q ss_pred CCCEEEEEE-CCCCEEEEECCCCCEEEEECC-CCCCEEEEEEEC--CCCEEEEEECC------------------CCEEE
Q ss_conf 999899995-999499997799805785348-888857999945--99989999499------------------91999
Q 006497 125 NDNWMVSGD-DGGAIKYWQNNMNNVKANKSA-HKESVRDLSFCR--TDLKFCSCSDD------------------TTVKV 182 (643)
Q Consensus 125 ~~~~L~sg~-~dg~I~iwd~~~~~~~~~~~~-~~~~I~~l~~s~--d~~~l~s~s~d------------------g~I~i 182 (643)
||++|++.. .+.+|.+.|+++.+....... ....+..+.... +..+++..+.+ +.+.+
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCEEEEE
T ss_conf 51289997589863899988540566799667887775012025797479973676544459998513240112268999
Q ss_pred EECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCC--EEEEECCCCCEEEEECCCCCCEEEEEEC--------CCC
Q ss_conf 977998245686026988489999599998999978990--9999889993167963689867999994--------999
Q 006497 183 WDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSL--VKLWDAKSGRELCSFHGHKNMVLCVKWN--------QNG 252 (643)
Q Consensus 183 wdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~--I~iwd~~s~~~~~~~~~~~~~i~~i~~s--------p~g 252 (643)
+|.++.+....+.. ......++++++++++++.+.+.. +.+.++...+ .-..+.++ +++
T Consensus 178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e----------~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAE----------MDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCS----------EEEEEEEEHHHHHHHHHHT
T ss_pred EECCCCEEEEEEEE-CCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCC----------CEEEEEECHHHHHHHHHCC
T ss_conf 96677669899640-897201531899998999713556885322225245----------4189996348868764059
Q ss_pred CEEEEEECCCCEEEEECCCC---EEEEEEECCCCCEEEEEEECCCCCE-EEEEECCCCEEEEECCCCCC----------E
Q ss_conf 99999979992999987998---6777950688883799990699989-99996899599997799965----------0
Q 006497 253 NWVLTASKDQIIKLYDIRAM---KELESFRGHRKDVTALAWHPFHEEY-FVSGSLDGSIFHWLVGHETP----------Q 318 (643)
Q Consensus 253 ~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~~~~I~~i~~sp~~~~~-l~sgs~dg~I~iwd~~~~~~----------~ 318 (643)
++-.. +.+.+.|.++. ..+..+. .......+.++| ++++ ++++..+.++.++|+++-.. .
T Consensus 247 k~~ei----ngV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSP-DGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 247 DYQEL----NGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp CSEEE----TTEEEEECSGG--CSSEEEEE-EESSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred CCEEE----CCCEEECCCCCCCCCEEEEEE-CCCCCCCEEECC-CCCEEEEECCCCCCEEEEEEHHHHHHHCCCCCCCCC
T ss_conf 93796----994661542367852038986-589877338899-997899938858957999822535665046884521
Q ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
Q ss_conf 89803358664899993999999999789939999357
Q 006497 319 VEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRN 356 (643)
Q Consensus 319 ~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~ 356 (643)
+.........-...+|+..+....+.--|..|.-|+++
T Consensus 321 ~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 321 VVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred EEEECCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
T ss_conf 79611357676620338984299986123169997344
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.02 E-value=0.0068 Score=32.17 Aligned_cols=227 Identities=7% Similarity=-0.038 Sum_probs=129.4
Q ss_pred EEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEE-CCCCEEEEECCCCE----EEEEEECCCCCEE
Q ss_conf 899995999499997799805785348888857999945999899994-99919999779982----4568602698848
Q 006497 128 WMVSGDDGGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCS-DDTTVKVWDFARCQ----EERSLTGHGWDVK 202 (643)
Q Consensus 128 ~L~sg~~dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s-~dg~I~iwdl~~~~----~~~~~~~~~~~V~ 202 (643)
+|+.+.. ..|+..++++.+...... ....+..++|....+.|+... .++.|...++.... ....+......+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CEEEEEECCCCCCEEEEC-CCCCEEEEEEEECCCEEEEEECCCCEEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 9999787-718999899985266417-99855999998089999999997997999993578887614899848999854
Q ss_pred EEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEC--CCCEEEEECCCCEEEEEEE
Q ss_conf 99995999989999-78990999988999316796368986799999499999999979--9929999879986777950
Q 006497 203 SVDWHPTKSLLVSG-GKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASK--DQIIKLYDIRAMKELESFR 279 (643)
Q Consensus 203 ~i~~sp~~~~l~sg-~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~--dg~I~iwd~~~~~~~~~~~ 279 (643)
.++++..+..|..+ ...+.|.+.+++.......+.........+++++...+|+.... .+.|...++..........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~ 160 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT 160 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCEEEECCCCCCEECCCC
T ss_conf 68986426528999548999985764895378887279988336999800394887126997302686368883441200
Q ss_pred CCCCCEEEEEEECCCCCEEEEEECCCCEEEEECCCCCCEEEEECC-CCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 688883799990699989999968995999977999650898033-586648999939999999997899399993579
Q 006497 280 GHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVGHETPQVEIHNV-HDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNR 357 (643)
Q Consensus 280 ~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~ 357 (643)
......+.+++++.++.++++-...+.|...+++........... ......++++.. +.+..+-..++.|...+...
T Consensus 161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~ly~td~~~~~I~~~~~~~ 238 (266)
T d1ijqa1 161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT 238 (266)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCCCEEEEEEEECCCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEEEEC-CEEEEEECCCCEEEEEECCC
T ss_conf 4532016998613356999952896799999899997799993898556647999989-99999989999699999989
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.02 E-value=0.0069 Score=32.16 Aligned_cols=277 Identities=12% Similarity=0.025 Sum_probs=145.4
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCC--------CCE-EEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECC
Q ss_conf 9989999789909999099983389870379--------888-9999917999899995999499997799805785348
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD--------HAI-RSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKSA 154 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~--------~~V-~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~~ 154 (643)
+..|++++.++.|.-.|.++++.+-++.... ..+ ..+++. +..++.++.|+.+.-.|.++++.+.....
T Consensus 68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~ 145 (582)
T d1flga_ 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE--CCCEEEECCCCEEEEECCCCCCEEEEECC
T ss_conf 9999996899959999689998688876889876553334446774586--78158864887499811666630211102
Q ss_pred CCC------CEEEEEEEC--CCCEEEEE-------ECCCCEEEEECCCCEEEEEEECCCC--------------------
Q ss_conf 888------857999945--99989999-------4999199997799824568602698--------------------
Q 006497 155 HKE------SVRDLSFCR--TDLKFCSC-------SDDTTVKVWDFARCQEERSLTGHGW-------------------- 199 (643)
Q Consensus 155 ~~~------~I~~l~~s~--d~~~l~s~-------s~dg~I~iwdl~~~~~~~~~~~~~~-------------------- 199 (643)
... .-.-+.+.. ....++.. ...+.|.-+|.++++.+..+.....
T Consensus 146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCCCCCEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 47776612403866704884757999907665434654634872388886789871217865622466653334323445
Q ss_pred --------------------C-EEEEEECCCCCEEEEEEC------------------------CCCEEEEECCCCCEEE
Q ss_conf --------------------8-489999599998999978------------------------9909999889993167
Q 006497 200 --------------------D-VKSVDWHPTKSLLVSGGK------------------------DSLVKLWDAKSGRELC 234 (643)
Q Consensus 200 --------------------~-V~~i~~sp~~~~l~sg~~------------------------dg~I~iwd~~s~~~~~ 234 (643)
. -..++++++.++++.+.. ...|.-.|+++++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH
T ss_conf 77754555577640205898622542003566458964578653334434567877676432221205873355313321
Q ss_pred EECCCCCCE---------EEEEEC-CCC---CEEEEEECCCCEEEEECCCCEEEEEEECCCCC-----------------
Q ss_conf 963689867---------999994-999---99999979992999987998677795068888-----------------
Q 006497 235 SFHGHKNMV---------LCVKWN-QNG---NWVLTASKDQIIKLYDIRAMKELESFRGHRKD----------------- 284 (643)
Q Consensus 235 ~~~~~~~~i---------~~i~~s-p~g---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----------------- 284 (643)
.++.....+ ..+.+. .++ ..++..+.++.+.++|.++++.+.........
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 385 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVERE 385 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECT
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC
T ss_conf 13322355312322344332343323445542357504644078624668730222356675543233566656520115
Q ss_pred ----------------------------EEEEEEECCCCCEEEEEEC--------------------------------C
Q ss_conf ----------------------------3799990699989999968--------------------------------9
Q 006497 285 ----------------------------VTALAWHPFHEEYFVSGSL--------------------------------D 304 (643)
Q Consensus 285 ----------------------------I~~i~~sp~~~~~l~sgs~--------------------------------d 304 (643)
-...++++..+.+++.... .
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 465 (582)
T d1flga_ 386 GQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHV 465 (582)
T ss_dssp TCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCS
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 64445335664455428977875577411441455877705310234553222233554336654266754453666887
Q ss_pred CCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 9599997799965089803358664899993999999999789939999357999953221
Q 006497 305 GSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRPGDTARDK 365 (643)
Q Consensus 305 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 365 (643)
|.|.-+|+.+++...+..... .+..-..+-.+.++++++.||.++.+|.+ .++++|+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~-TGe~LW~~ 523 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAK-SGKELWKF 523 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETT-TCCEEEEE
T ss_pred CEEEEECCCCCCEEEECCCCC--CCCCCEEEECCCEEEEECCCCEEEEEECC-CCCEEEEE
T ss_conf 759998078995873267799--97450169769869996799969999999-98686798
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.63 E-value=0.013 Score=30.08 Aligned_cols=239 Identities=8% Similarity=-0.013 Sum_probs=106.7
Q ss_pred CEEEEEECCCCCEEEEEE-CC----CCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECC-------------
Q ss_conf 889999917999899995-99----949999779980578534888885799994599989999499-------------
Q 006497 116 AIRSMVWSHNDNWMVSGD-DG----GAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDD------------- 177 (643)
Q Consensus 116 ~V~~i~~s~~~~~L~sg~-~d----g~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~d------------- 177 (643)
.+..+++++++++++.+- .+ ..|+++|+.+++.+.... .......++|..|+..|+....+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EECCEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCC-CCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCC
T ss_conf 3342585378987999955666721046774167640314422-243236417857998999997626667654433345
Q ss_pred ---CCEEEEECCCCEEE--EEEECCC--CCEEEEEECCCCCEEEEEEC---CCC--EEEEECCCCC--------EEEEEC
Q ss_conf ---91999977998245--6860269--88489999599998999978---990--9999889993--------167963
Q 006497 178 ---TTVKVWDFARCQEE--RSLTGHG--WDVKSVDWHPTKSLLVSGGK---DSL--VKLWDAKSGR--------ELCSFH 237 (643)
Q Consensus 178 ---g~I~iwdl~~~~~~--~~~~~~~--~~V~~i~~sp~~~~l~sg~~---dg~--I~iwd~~s~~--------~~~~~~ 237 (643)
..|..+.+.+.... ..+.... ..+..+..+.++++++.... +.. +.+.|+.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 78633899988988653100223235772577530268762456876436776479999517776455663101258304
Q ss_pred CCCCCEEEEEECCCCCEEEEEE---CCCCEEEEECCCCEE--EEEEE-CCCCCEEEEEEECCCCCEEEEEECCC--CEEE
Q ss_conf 6898679999949999999997---999299998799867--77950-68888379999069998999996899--5999
Q 006497 238 GHKNMVLCVKWNQNGNWVLTAS---KDQIIKLYDIRAMKE--LESFR-GHRKDVTALAWHPFHEEYFVSGSLDG--SIFH 309 (643)
Q Consensus 238 ~~~~~i~~i~~sp~g~~l~s~s---~dg~I~iwd~~~~~~--~~~~~-~~~~~I~~i~~sp~~~~~l~sgs~dg--~I~i 309 (643)
........+... ++.+++... .++.|...++..... ...+. .+...+..-.+...++.+++....++ .|++
T Consensus 285 ~~~~~~~~~~~~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v 363 (430)
T d1qfma1 285 NFEGEYDYVTNE-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL 363 (430)
T ss_dssp SSSSCEEEEEEE-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred CCCCCEEEEECC-CCEEECCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCCEEEEEEEEECCEEEEEEECCCEEEEEE
T ss_conf 655626877137-7302324576565541587347787655415895136752555678977999999999188708999
Q ss_pred EECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECC----CEEEEEECCC
Q ss_conf 97799965089803358664899993999999999789----9399993579
Q 006497 310 WLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSND----HTTKFWCRNR 357 (643)
Q Consensus 310 wd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~D----g~I~iWd~~~ 357 (643)
++...+... .+.......|..+....+...+...-.+ .++.-+|+.+
T Consensus 364 ~~~~~~~~~-~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 364 HDLATGALL-KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (430)
T ss_dssp EETTTCCEE-EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EECCCCCEE-EECCCCCCEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCC
T ss_conf 989999588-854888716864148988998999981899987699999999
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.50 E-value=0.016 Score=29.49 Aligned_cols=259 Identities=10% Similarity=0.005 Sum_probs=131.1
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCC--------CCEEEEEECCCCCEEEEEE-------CCCCEEEEECCCCCE
Q ss_conf 9989999789909999099983389870379--------8889999917999899995-------999499997799805
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHD--------HAIRSMVWSHNDNWMVSGD-------DGGAIKYWQNNMNNV 148 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~--------~~V~~i~~s~~~~~L~sg~-------~dg~I~iwd~~~~~~ 148 (643)
+..++.++.++.+.-.|.++++.+-.....+ ..-..+.-......++..+ ..+.|.-+|.++++.
T Consensus 117 ~~~i~~~t~~~~l~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~ 196 (582)
T d1flga_ 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCCEEEECCCCEEEEECCCCCCEEEEECCCCCCCCCEEECCCEEECCCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCE
T ss_conf 78158864887499811666630211102477766124038667048847579999076654346546348723888867
Q ss_pred EEEECCCC----------------------------------------CC-EEEEEEECCCCEEEEEEC-----------
Q ss_conf 78534888----------------------------------------88-579999459998999949-----------
Q 006497 149 KANKSAHK----------------------------------------ES-VRDLSFCRTDLKFCSCSD----------- 176 (643)
Q Consensus 149 ~~~~~~~~----------------------------------------~~-I~~l~~s~d~~~l~s~s~----------- 176 (643)
+..+.... .. -..+++.+....++.+..
T Consensus 197 ~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~ 276 (582)
T d1flga_ 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEECCCCCEEEECCCCCCCCCCCCCC
T ss_conf 89871217865622466653334323445777545555776402058986225420035664589645786533344345
Q ss_pred -------------CCCEEEEECCCCEEEEEEECCCCCEE---------EEEEC-CCCC---EEEEEECCCCEEEEECCCC
Q ss_conf -------------99199997799824568602698848---------99995-9999---8999978990999988999
Q 006497 177 -------------DTTVKVWDFARCQEERSLTGHGWDVK---------SVDWH-PTKS---LLVSGGKDSLVKLWDAKSG 230 (643)
Q Consensus 177 -------------dg~I~iwdl~~~~~~~~~~~~~~~V~---------~i~~s-p~~~---~l~sg~~dg~I~iwd~~s~ 230 (643)
...|...|+++++....+......+. .+.+. .++. .++..+.++.++++|.+++
T Consensus 277 ~~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG 356 (582)
T d1flga_ 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG 356 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCC
T ss_conf 67877676432221205873355313321133223553123223443323433234455423575046440786246687
Q ss_pred CEEEEECCCCC---------------------------------------------CEEEEEECCCCCEEEEEEC-----
Q ss_conf 31679636898---------------------------------------------6799999499999999979-----
Q 006497 231 RELCSFHGHKN---------------------------------------------MVLCVKWNQNGNWVLTASK----- 260 (643)
Q Consensus 231 ~~~~~~~~~~~---------------------------------------------~i~~i~~sp~g~~l~s~s~----- 260 (643)
+.+........ .-...+++++...+++...
T Consensus 357 ~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~ 436 (582)
T d1flga_ 357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED 436 (582)
T ss_dssp CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCEEEECCCCCCC
T ss_conf 30222356675543233566656520115644453356644554289778755774114414558777053102345532
Q ss_pred ----------------------------CCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf ----------------------------9929999879986777950688883799990699989999968995999977
Q 006497 261 ----------------------------DQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLV 312 (643)
Q Consensus 261 ----------------------------dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~ 312 (643)
.|.|.-+|+.+++.+.++......... ..+. .+.++++++.||.++.+|.
T Consensus 437 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g-~lst-agglVF~Gt~dg~l~A~Da 514 (582)
T d1flga_ 437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAG-VLAT-AGNLVFTGTGDGYFKAFDA 514 (582)
T ss_dssp EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSC-CEEE-TTTEEEEECTTSEEEEEET
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEECCCCCCCCCC-EEEE-CCCEEEEECCCCEEEEEEC
T ss_conf 2223355433665426675445366688775999807899587326779997450-1697-6986999679996999999
Q ss_pred CCCCCEEEEECCCCCCEEEEEECCCCC-EEEEE
Q ss_conf 999650898033586648999939999-99999
Q 006497 313 GHETPQVEIHNVHDNTVWDLAWHPIGY-LLCSG 344 (643)
Q Consensus 313 ~~~~~~~~~~~~h~~~V~~l~~s~d~~-~L~sg 344 (643)
++++.+.+........-.-+.|..+++ +++..
T Consensus 515 ~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ 547 (582)
T d1flga_ 515 KSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCEEEEEECCCCCCCCCEEEEECCEEEEEEE
T ss_conf 998686798899996216779998999999999
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.12 E-value=0.025 Score=28.04 Aligned_cols=227 Identities=10% Similarity=0.109 Sum_probs=111.7
Q ss_pred EEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCC-EEEEECCC-
Q ss_conf 9993899989999789909999099983389870379888999991799989999599949999779980-57853488-
Q 006497 78 VLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNN-VKANKSAH- 155 (643)
Q Consensus 78 i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~-~~~~~~~~- 155 (643)
.-.+|..+.||.-+ ...+.++|+++.+.++.+.- .+.|.--.|..+ +.|+..+. ..|+-|+++... ....+..|
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~ 143 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHS 143 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCCCEEEESSS-SEEEEECS-SEEEEEESSSSCCCEEEEECCG
T ss_pred HHCCCCCCEEEEEC-CCEEEEEEHHHHHHHCEEEC-CCCCEEEEECCC-CEEEEECC-CCEEEECCCCCCCCHHHHHHCC
T ss_conf 53088875799962-88689984468221115876-888579994479-88999918-8169973569998526623210
Q ss_pred ---CCCEEEEEEECCCCEEEEEE---C----CCCEEEEECCCCEEEEEEECCCCCEEEEEECCCC---CEEEEEEC---C
Q ss_conf ---88857999945999899994---9----9919999779982456860269884899995999---98999978---9
Q 006497 156 ---KESVRDLSFCRTDLKFCSCS---D----DTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTK---SLLVSGGK---D 219 (643)
Q Consensus 156 ---~~~I~~l~~s~d~~~l~s~s---~----dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~---~~l~sg~~---d 219 (643)
...|.....+++.++++..+ . .|.+.+|..++. ....+++|......+.+..+. .+++.+.. .
T Consensus 144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~ 222 (327)
T d1utca2 144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 222 (327)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred CCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEEEEECCC-CCCCCCCEEEEEEEEECCCCCCCCEEEEEEECCCCC
T ss_conf 1248638998989999889999571378830588889980228-675232034656888707998873099999878987
Q ss_pred CCEEEEECCCCCE--------EEEE----CCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEE
Q ss_conf 9099998899931--------6796----368986799999499999999979992999987998677795068888379
Q 006497 220 SLVKLWDAKSGRE--------LCSF----HGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTA 287 (643)
Q Consensus 220 g~I~iwd~~s~~~--------~~~~----~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~ 287 (643)
+++.|.++..... ...+ +...+--.++..+..-..++..+.-|.|.+||+.++.++..-+.....|..
T Consensus 223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~ 302 (327)
T d1utca2 223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFV 302 (327)
T ss_dssp EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCEEE
T ss_conf 47999986887557888753268877796346884779996433799999966758999975666289994047884489
Q ss_pred EEEECCCCCEEEEEECCCCEEEE
Q ss_conf 99906999899999689959999
Q 006497 288 LAWHPFHEEYFVSGSLDGSIFHW 310 (643)
Q Consensus 288 i~~sp~~~~~l~sgs~dg~I~iw 310 (643)
.+-+. ...-+++...+|.|..-
T Consensus 303 ~a~~~-~~~Gi~~VNr~GqVl~v 324 (327)
T d1utca2 303 TAPHE-ATAGIIGVNRKGQVLSV 324 (327)
T ss_dssp EEEET-TTTEEEEEETTSEEEEE
T ss_pred ECCCC-CCCEEEEECCCCEEEEE
T ss_conf 62678-88608998789769999
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=94.88 E-value=0.064 Score=25.01 Aligned_cols=207 Identities=15% Similarity=0.082 Sum_probs=80.3
Q ss_pred CCCEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEE
Q ss_conf 99499997799805785348888857999945999899994999199997799824568602698848999959999899
Q 006497 135 GGAIKYWQNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLV 214 (643)
Q Consensus 135 dg~I~iwd~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~ 214 (643)
||.|..|-.+....+..-......|..++.- ....+.. .|+.+..|.................+..++... ...+
T Consensus 43 dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~al-~dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~--~~~~ 117 (273)
T d1jtdb_ 43 GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASY 117 (273)
T ss_dssp TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEEET--TEEE
T ss_pred CCEEEEEECCCCCCEEEEECCCCCCEEEECC--CCCEEEE-EEEEEECCCCCCCEEECCCCCCCCCEEEEEEEC--CCCC
T ss_conf 9989998589998600200234664599659--9725514-320130268873001022333442014786301--1111
Q ss_pred EEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCC
Q ss_conf 99789909999889993167963689867999994999999999799929999879986777950688883799990699
Q 006497 215 SGGKDSLVKLWDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFH 294 (643)
Q Consensus 215 sg~~dg~I~iwd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~ 294 (643)
...|+.+..|.................|..++-. ...++ ...++.++.|.......+.........|..++..
T Consensus 118 -~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G--- 190 (273)
T d1jtdb_ 118 -ALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGG--- 190 (273)
T ss_dssp -EEETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTSTTSCCGGGSSSEEEEEEC---
T ss_pred -CCCCCCCEECCCCCCCCEEEECCCCCEEEEEECC--CEEEE-EECCCCEEEEECCCCCCCCCCCCCCCCCCCEECC---
T ss_conf -1123320000127988343403577317887503--22564-5236641675213578655333246774111030---
Q ss_pred CCEEEEEECCCCEEEEECCCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 9899999689959999779996508980335866489999399999999978993999935799
Q 006497 295 EEYFVSGSLDGSIFHWLVGHETPQVEIHNVHDNTVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP 358 (643)
Q Consensus 295 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d~~~L~sgs~Dg~I~iWd~~~~ 358 (643)
....+.-. ||.|+.|=......+-. .......|..++-. +...++. . ||.|..|-.+..
T Consensus 191 ~~h~~~l~-dG~v~~WG~n~~Gql~~-~~~~~~~v~~I~~G-~~~~~~l-~-~g~v~~WG~~~~ 249 (273)
T d1jtdb_ 191 IFHSLALK-DGKVIAWGDNRYKQTTV-PTEALSGVSAIASG-EWYSLAL-K-NGKVIAWGSSRT 249 (273)
T ss_dssp SSEEEEEE-TTEEEEEECCTTSTTCC-CGGGGSSCCEEEEC-SSCEEEE-E-TTEEEEESTTCC
T ss_pred CEEEEEEE-CCCEEECCCCCCCCCCC-CCCCCCCCEEEEEC-CCEEEEE-E-CCEEEEECCCCC
T ss_conf 20367885-68489837999896078-70578995899959-0569999-8-999999789977
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.42 E-value=0.081 Score=24.27 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=113.8
Q ss_pred EEEEEECCCCCEEEEEECCC-----------CEEEEECCCCCEEEE---ECCCCCCEEEEEEECCCCEEEEEECC-CCEE
Q ss_conf 89999917999899995999-----------499997799805785---34888885799994599989999499-9199
Q 006497 117 IRSMVWSHNDNWMVSGDDGG-----------AIKYWQNNMNNVKAN---KSAHKESVRDLSFCRTDLKFCSCSDD-TTVK 181 (643)
Q Consensus 117 V~~i~~s~~~~~L~sg~~dg-----------~I~iwd~~~~~~~~~---~~~~~~~I~~l~~s~d~~~l~s~s~d-g~I~ 181 (643)
+...+...++++++.++.+. .+.+||..++.-... ...+.......++..++..++.++.+ ..+.
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred CEEEEEEECCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCEE
T ss_conf 17899925999999984057666788776068999988889686667789874452568999468868986368886216
Q ss_pred EEECCCCEEEEEEEC-CCCCEEEEEECCCCCEEEEEECC------CCEEEEECCCCCEEEEECCCC--------------
Q ss_conf 997799824568602-69884899995999989999789------909999889993167963689--------------
Q 006497 182 VWDFARCQEERSLTG-HGWDVKSVDWHPTKSLLVSGGKD------SLVKLWDAKSGRELCSFHGHK-------------- 240 (643)
Q Consensus 182 iwdl~~~~~~~~~~~-~~~~V~~i~~sp~~~~l~sg~~d------g~I~iwd~~s~~~~~~~~~~~-------------- 240 (643)
+||..+..-...-.. ....-.+.+...|+++++.++.+ ..+.+||..+.+-. .+....
T Consensus 102 ~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~~~~~~~~~~~~~~ 180 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADKQGLYR 180 (387)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCTTGGGT
T ss_pred EECCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCEE-ECCCCCCCCCCCCCCCCEEE
T ss_conf 75675574421565664210130355317826652136633354320566348889551-15887644311346651365
Q ss_pred -CCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEE--CC------CCCEEEEEEECCCCCEEEEEECCC------
Q ss_conf -867999994999999999799929999879986777950--68------888379999069998999996899------
Q 006497 241 -NMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFR--GH------RKDVTALAWHPFHEEYFVSGSLDG------ 305 (643)
Q Consensus 241 -~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~--~~------~~~I~~i~~sp~~~~~l~sgs~dg------ 305 (643)
.....+....+++.++.+..+..+.++|..+........ .. ...-.++.+...++++++.++...
T Consensus 181 ~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~ 260 (387)
T d1k3ia3 181 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA 260 (387)
T ss_dssp TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred CCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCC
T ss_conf 04226999707987787468677478148666717316655667665763222637886135882478875367887752
Q ss_pred --CEEEEECCCCCCE---EEEEC--CCCCCEEEEEECCCCCEEEEEECC
Q ss_conf --5999977999650---89803--358664899993999999999789
Q 006497 306 --SIFHWLVGHETPQ---VEIHN--VHDNTVWDLAWHPIGYLLCSGSND 347 (643)
Q Consensus 306 --~I~iwd~~~~~~~---~~~~~--~h~~~V~~l~~s~d~~~L~sgs~D 347 (643)
...+.++...... ..... .....-.+....+|+++++.++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~ 309 (387)
T d1k3ia3 261 TTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309 (387)
T ss_dssp CCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred CCEEECCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCC
T ss_conf 1000001111135678840603665665434335660587499988845
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.56 E-value=0.12 Score=23.12 Aligned_cols=177 Identities=8% Similarity=-0.012 Sum_probs=91.6
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECC-----------CCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEE
Q ss_conf 776999993899989999789909999099-----------983389870379888999991799989999599949999
Q 006497 73 CSINRVLWTPTGRRLITGSQSGEFTLWNGQ-----------SFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYW 141 (643)
Q Consensus 73 ~~I~~i~~spdg~~L~tgs~dg~I~iwd~~-----------~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iw 141 (643)
...+-++++....++++|+.++ ++|...+ ........ .-..|..++|+.+ .|++.. ++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~~-~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVST-RNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEEE-SSEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECC--CCCCEEEEEEECC--EEEEEE-CCCEEEE
T ss_conf 4442689957778899988997-79999899787865567888623416--8998689986189--899995-8978999
Q ss_pred ECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEE-----CCCCCEEEEEECCCCCEEEEE
Q ss_conf 779980578534888885799994599989999499919999779982456860-----269884899995999989999
Q 006497 142 QNNMNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLT-----GHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 142 d~~~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~-----~~~~~V~~i~~sp~~~~l~sg 216 (643)
+................+..+.+++. .++....++.+.++++.+........ .....+.+++|++.+..++++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCEECCCC--EEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEE
T ss_conf 85100145446554556111021886--0699965897789994158644444775238733892699996896899981
Q ss_pred ECCCCEEE-EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEE
Q ss_conf 78990999-9889993167963689867999994999999999
Q 006497 217 GKDSLVKL-WDAKSGRELCSFHGHKNMVLCVKWNQNGNWVLTA 258 (643)
Q Consensus 217 ~~dg~I~i-wd~~s~~~~~~~~~~~~~i~~i~~sp~g~~l~s~ 258 (643)
..+. ..+ -++.....+.........+.+|.|..+..++++-
T Consensus 189 ~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 189 RNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CCCC-EEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEE
T ss_conf 8982-03656778820157886778616689995175699998
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=93.39 E-value=0.12 Score=22.93 Aligned_cols=222 Identities=11% Similarity=0.047 Sum_probs=109.2
Q ss_pred CEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC
Q ss_conf 76999993899989999789909999099983389870379888999991799989999599949999779980578534
Q 006497 74 SINRVLWTPTGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHNDNWMVSGDDGGAIKYWQNNMNNVKANKS 153 (643)
Q Consensus 74 ~I~~i~~spdg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~~~~~~~~~~ 153 (643)
.|..|+-... ..++.. ||+|+.|-......+-.-......|..+..- ..+.+. -.|+.+..|............
T Consensus 27 ~i~~va~G~~--h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G--~~~~~a-l~dg~v~~wG~~~~gq~~~~~ 100 (273)
T d1jtdb_ 27 GVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAG--NYHSLA-LKDGEVIAWGGNEDGQTTVPA 100 (273)
T ss_dssp SEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEEC--SSEEEE-EETTEEEEEECCTTSTTCCCG
T ss_pred CCEEEECCCC--EEEEEE-CCEEEEEECCCCCCEEEEECCCCCCEEEECC--CCCEEE-EEEEEEECCCCCCCEEECCCC
T ss_conf 8599985679--899998-9989998589998600200234664599659--972551-432013026887300102233
Q ss_pred CCCCCEEEEEEECCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEE
Q ss_conf 88888579999459998999949991999977998245686026988489999599998999978990999988999316
Q 006497 154 AHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGREL 233 (643)
Q Consensus 154 ~~~~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~ 233 (643)
.....+..++.... ..+. ..|+.+..|.................|..++-. .. .+....++.++.|........
T Consensus 101 ~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~--~~-~~~~~~~g~~~~~G~~~~g~~ 174 (273)
T d1jtdb_ 101 EARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VY-TALAVKNGGVIAWGDNYFGQT 174 (273)
T ss_dssp GGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SS-EEEEEETTEEEEEECCTTSTT
T ss_pred CCCCCEEEEEEECC--CCCC-CCCCCCEECCCCCCCCEEEECCCCCEEEEEECC--CE-EEEEECCCCEEEEECCCCCCC
T ss_conf 34420147863011--1111-123320000127988343403577317887503--22-564523664167521357865
Q ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 79636898679999949999999997999299998799867779506888837999906999899999689959999779
Q 006497 234 CSFHGHKNMVLCVKWNQNGNWVLTASKDQIIKLYDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSLDGSIFHWLVG 313 (643)
Q Consensus 234 ~~~~~~~~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sgs~dg~I~iwd~~ 313 (643)
.........|..|+... ...+.-. ||.|+.|=......+..-......|..++... ...++. . ||.|+.|-..
T Consensus 175 ~~~~~~~~~v~~Is~G~--~h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~--~~~~~l-~-~g~v~~WG~~ 247 (273)
T d1jtdb_ 175 TVPAEAQSGVDDVAGGI--FHSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGE--WYSLAL-K-NGKVIAWGSS 247 (273)
T ss_dssp SCCGGGSSSEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECS--SCEEEE-E-TTEEEEESTT
T ss_pred CCCCCCCCCCCCEECCC--EEEEEEE-CCCEEECCCCCCCCCCCCCCCCCCCEEEEECC--CEEEEE-E-CCEEEEECCC
T ss_conf 53332467741110302--0367885-68489837999896078705789958999590--569999-8-9999997899
Q ss_pred C
Q ss_conf 9
Q 006497 314 H 314 (643)
Q Consensus 314 ~ 314 (643)
.
T Consensus 248 ~ 248 (273)
T d1jtdb_ 248 R 248 (273)
T ss_dssp C
T ss_pred C
T ss_conf 7
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.86 E-value=0.15 Score=22.39 Aligned_cols=12 Identities=8% Similarity=0.121 Sum_probs=6.3
Q ss_pred CEEEEECCCCCE
Q ss_conf 099990999833
Q 006497 95 EFTLWNGQSFNF 106 (643)
Q Consensus 95 ~I~iwd~~~~~~ 106 (643)
.+.+||.++.+-
T Consensus 20 ~~~~yd~~t~~W 31 (288)
T d1zgka1 20 YLEAYNPSNGTW 31 (288)
T ss_dssp CEEEEETTTTEE
T ss_pred EEEEEECCCCEE
T ss_conf 599998999969
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=91.69 E-value=0.2 Score=21.41 Aligned_cols=74 Identities=11% Similarity=0.016 Sum_probs=28.9
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECCC-----CEEEEEEEC--CCCCEEEEEEECC---CCCEEEEEECCCCEEEE
Q ss_conf 8679999949999999997999299998799-----867779506--8888379999069---99899999689959999
Q 006497 241 NMVLCVKWNQNGNWVLTASKDQIIKLYDIRA-----MKELESFRG--HRKDVTALAWHPF---HEEYFVSGSLDGSIFHW 310 (643)
Q Consensus 241 ~~i~~i~~sp~g~~l~s~s~dg~I~iwd~~~-----~~~~~~~~~--~~~~I~~i~~sp~---~~~~l~sgs~dg~I~iw 310 (643)
..+..+.+......|+++-++..|..++... ...+....+ ....+..++.-.. .+.+|++.-.+++..+|
T Consensus 180 ~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vy 259 (353)
T d1h6la_ 180 SQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIY 259 (353)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEE
T ss_pred CCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEE
T ss_conf 86216998178894999547552388880457776622431136754457854537998479985999973799769999
Q ss_pred ECCC
Q ss_conf 7799
Q 006497 311 LVGH 314 (643)
Q Consensus 311 d~~~ 314 (643)
+...
T Consensus 260 dr~~ 263 (353)
T d1h6la_ 260 ERQG 263 (353)
T ss_dssp ESST
T ss_pred ECCC
T ss_conf 5678
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.87 E-value=0.24 Score=20.85 Aligned_cols=193 Identities=9% Similarity=0.115 Sum_probs=96.3
Q ss_pred CCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECC----C--CCEEEEEE-CC---CCEEEEECCCC-CEEEE
Q ss_conf 999899997899099990999833898703798889999917----9--99899995-99---94999977998-05785
Q 006497 83 TGRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSH----N--DNWMVSGD-DG---GAIKYWQNNMN-NVKAN 151 (643)
Q Consensus 83 dg~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~----~--~~~L~sg~-~d---g~I~iwd~~~~-~~~~~ 151 (643)
+..+++....++-|++||++ ++.+..+. .+.++.+.... + ...|++++ .+ ..|.+|.+... ..+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CCCEEEEECCCCCEEEECCC-CCEEEECC--CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECCCCCCCCC
T ss_conf 72389997586887999189-96877403--6776732433664357750689999578676305999984476663112
Q ss_pred ECC-------CCCCEEEEEE--ECC-CC-EEEEEECCCCEEEEECC---CC----EEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 348-------8888579999--459-99-89999499919999779---98----2456860269884899995999989
Q 006497 152 KSA-------HKESVRDLSF--CRT-DL-KFCSCSDDTTVKVWDFA---RC----QEERSLTGHGWDVKSVDWHPTKSLL 213 (643)
Q Consensus 152 ~~~-------~~~~I~~l~~--s~d-~~-~l~s~s~dg~I~iwdl~---~~----~~~~~~~~~~~~V~~i~~sp~~~~l 213 (643)
+.. ....+..+|+ ++. +. ++++...+|.+..|.+. .+ +.++.+. ....+..|.++.+...|
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSL 194 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEEEECCCCCCEEEEEEECCC-CCCCCCEEEEECCCCCE
T ss_conf 46655433456676569997742777807999975886089999974789725557630358-88862169981788949
Q ss_pred EEEECCCCEEEEECCCC-----CEEEEEC--CCCCCEEEEEECC--CCC-EEEEEE-CCCCEEEEECCC-CEEEEEEE
Q ss_conf 99978990999988999-----3167963--6898679999949--999-999997-999299998799-86777950
Q 006497 214 VSGGKDSLVKLWDAKSG-----RELCSFH--GHKNMVLCVKWNQ--NGN-WVLTAS-KDQIIKLYDIRA-MKELESFR 279 (643)
Q Consensus 214 ~sg~~dg~I~iwd~~s~-----~~~~~~~--~~~~~i~~i~~sp--~g~-~l~s~s-~dg~I~iwd~~~-~~~~~~~~ 279 (643)
+++-++..|..++.+-. ..+.... .....+..|+... ++. ||++.+ .+++..+||... .+.+..|.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEECCCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEE
T ss_conf 995475523888804577766224311367544578545379984799859999737997699995678865332599
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.64 E-value=0.25 Score=20.70 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=22.6
Q ss_pred EEEEECCCCEEEEEE-CC----CCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCEEEEE
Q ss_conf 999945999899994-99----919999779982456860269884899995999989999
Q 006497 161 DLSFCRTDLKFCSCS-DD----TTVKVWDFARCQEERSLTGHGWDVKSVDWHPTKSLLVSG 216 (643)
Q Consensus 161 ~l~~s~d~~~l~s~s-~d----g~I~iwdl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg 216 (643)
.+++++++++++.+- .+ ..|+++|+.+++.+..... ......++|..|++.|+..
T Consensus 129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~ 188 (430)
T d1qfma1 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYN 188 (430)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEE
T ss_pred CEEECCCCCEEEEEECCCCCCHHEEEEECCCCCEECCCCCC-CCCCCCEEECCCCCEEEEE
T ss_conf 25853789879999556667210467741676403144222-4323641785799899999
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.89 E-value=0.28 Score=20.27 Aligned_cols=177 Identities=11% Similarity=0.048 Sum_probs=99.3
Q ss_pred CCEEEEEECCCCCEEEEEECCCCEEEEECC-----------CCCEEEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE
Q ss_conf 888999991799989999599949999779-----------980578534888885799994599989999499919999
Q 006497 115 HAIRSMVWSHNDNWMVSGDDGGAIKYWQNN-----------MNNVKANKSAHKESVRDLSFCRTDLKFCSCSDDTTVKVW 183 (643)
Q Consensus 115 ~~V~~i~~s~~~~~L~sg~~dg~I~iwd~~-----------~~~~~~~~~~~~~~I~~l~~s~d~~~l~s~s~dg~I~iw 183 (643)
....-++.+....+++.++.++ ++|..++ ........ ....|..++|+.+ .++.. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred CCCCEEEEECCCCEEEEECCCE-EEEEEHHHHHHHHHCCCCCCCCEECC--CCCCEEEEEEECC--EEEEE-ECCCEEEE
T ss_conf 4442689957778899988997-79999899787865567888623416--8998689986189--89999-58978999
Q ss_pred ECCCCEEEEEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCEEEEEC-----CCCCCEEEEEECCCCCEEEEE
Q ss_conf 779982456860269884899995999989999789909999889993167963-----689867999994999999999
Q 006497 184 DFARCQEERSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAKSGRELCSFH-----GHKNMVLCVKWNQNGNWVLTA 258 (643)
Q Consensus 184 dl~~~~~~~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~s~~~~~~~~-----~~~~~i~~i~~sp~g~~l~s~ 258 (643)
+................+..+.+++ ..++....++.+.++++.+++...... .....+.+++|++.+..++++
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p--~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~ 188 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVN--NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAW 188 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECS--SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCEECCC--CEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEEEEEECCCEEEEEE
T ss_conf 8510014544655455611102188--60699965897789994158644444775238733892699996896899981
Q ss_pred ECCCCEEE-EECCCCEEEEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 79992999-98799867779506888837999906999899999
Q 006497 259 SKDQIIKL-YDIRAMKELESFRGHRKDVTALAWHPFHEEYFVSG 301 (643)
Q Consensus 259 s~dg~I~i-wd~~~~~~~~~~~~~~~~I~~i~~sp~~~~~l~sg 301 (643)
..+. ..+ -++.....+.........+.++.|.. +..++++-
T Consensus 189 ~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~-~~~F~vvy 230 (381)
T d1xipa_ 189 RNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILS-PQDFLAVF 230 (381)
T ss_dssp ETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESS-SSEEEEEE
T ss_pred CCCC-EEECCCCCCCCCCCCCCCCCCCEEEEEEEC-CCEEEEEE
T ss_conf 8982-036567788201578867786166899951-75699998
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.33 Score=19.80 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=9.1
Q ss_pred CCCEEEEEECCCE-----EEEEECC
Q ss_conf 9999999978993-----9999357
Q 006497 337 IGYLLCSGSNDHT-----TKFWCRN 356 (643)
Q Consensus 337 d~~~L~sgs~Dg~-----I~iWd~~ 356 (643)
++++++.|+.++. |.+||++
T Consensus 242 ~~~l~v~GG~~~~~~~~~v~~yd~~ 266 (288)
T d1zgka1 242 QGRIYVLGGYDGHTFLDSVECYDPD 266 (288)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETT
T ss_pred CCEEEEEECCCCCEECCEEEEEECC
T ss_conf 9999999567999545639999799
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=87.53 E-value=0.4 Score=19.17 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=40.6
Q ss_pred CCEEEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEECCC-CCEEEEE-E-----CCCCEEEEECCCCCEEEEECCCC
Q ss_conf 998999978990999909998338987037988899999179-9989999-5-----99949999779980578534888
Q 006497 84 GRRLITGSQSGEFTLWNGQSFNFEMILQAHDHAIRSMVWSHN-DNWMVSG-D-----DGGAIKYWQNNMNNVKANKSAHK 156 (643)
Q Consensus 84 g~~L~tgs~dg~I~iwd~~~~~~~~~l~~h~~~V~~i~~s~~-~~~L~sg-~-----~dg~I~iwd~~~~~~~~~~~~~~ 156 (643)
.++|+++...|.+.++-+..++.++..+ .+|.....-.. -.++..+ + +-..|.+-++........+....
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk 102 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVK 102 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSC
T ss_pred CCEEEEEECCCEEEEEEEECCEEEEEEC---CCCCCCCCCCCCCCEEEEEEEHHCCCCEEEEEEECCCCCCEEEEECCCC
T ss_conf 8589998326668899996887899741---6666768886676468897601247000248987058888024733774
Q ss_pred -CCEEEEEEECCCCEEEEEECCCCEEEEECCCCEE
Q ss_conf -8857999945999899994999199997799824
Q 006497 157 -ESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQE 190 (643)
Q Consensus 157 -~~I~~l~~s~d~~~l~s~s~dg~I~iwdl~~~~~ 190 (643)
-.|.++++. +.+..++++......+|-++.++.
T Consensus 103 ~vRI~S~~yd-dk~vvF~Gased~~~LYviegGkl 136 (313)
T d2hu7a1 103 PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGL 136 (313)
T ss_dssp SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEE
T ss_pred EEEEEEEEEC-CCEEEEECCCCCCEEEEEEECCCE
T ss_conf 0799886526-833899655678337999828955
|
| >d1co6a_ a.3.1.1 (A:) Cytochrome c2 {Rhodopseudomonas viridis [TaxId: 1079]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome c superfamily: Cytochrome c family: monodomain cytochrome c domain: Cytochrome c2 species: Rhodopseudomonas viridis [TaxId: 1079]
Probab=84.83 E-value=0.23 Score=20.89 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC
Q ss_conf 0799988999999999888888-77886657743357677
Q 006497 384 RMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMPLS 422 (643)
Q Consensus 384 ~~~~~~~~~~~~~~~g~~~~~~-~r~~g~v~gy~~s~~l~ 422 (643)
+..||.+.+....+.||.|.++ +|..|++++|.||.+|.
T Consensus 13 C~~CH~~~~~~~~~~GP~L~gi~gr~~g~~~~~~ys~al~ 52 (107)
T d1co6a_ 13 CLVCHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANK 52 (107)
T ss_dssp HHTTCCCSTTCCCCSSCCCTTCTTCBTTCSTTCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 6343730789888744100575576423366535388886
|
| >d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: GyrA/ParC C-terminal domain-like family: GyrA/ParC C-terminal domain-like domain: Topoisomerase IV subunit A, ParC, C-terminal domain species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.44 E-value=0.66 Score=17.54 Aligned_cols=60 Identities=13% Similarity=0.061 Sum_probs=27.1
Q ss_pred CCEEEEEECCCCEEEEECCCCEE------E--EEEECCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 99899994999199997799824------5--6860269884899995999989999789909999889
Q 006497 168 DLKFCSCSDDTTVKVWDFARCQE------E--RSLTGHGWDVKSVDWHPTKSLLVSGGKDSLVKLWDAK 228 (643)
Q Consensus 168 ~~~l~s~s~dg~I~iwdl~~~~~------~--~~~~~~~~~V~~i~~sp~~~~l~sg~~dg~I~iwd~~ 228 (643)
..+|+..+..|.++..++..... . ..+. ..+.+..+....+...++.++.+|.+..++..
T Consensus 106 ~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~-~~D~l~~v~~~~~~~~i~l~t~~G~~lrf~~~ 173 (323)
T d1wp5a_ 106 NGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLK-NDDQVVDVHLTDGMNELFLVTHNGYALWFDES 173 (323)
T ss_dssp SCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCC-TTCCEEEEEEECSCSEEEEEETTSEEEEEEGG
T ss_pred CEEEEEEEEHHHEEECCHHHHHHHHCCCHHHHCCCC-CCCCCCCEECCCCCEEEEEEEECCEEEEEECC
T ss_conf 104899861011010457772001003212322344-34444541026897389999703302674113
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=81.68 E-value=0.7 Score=17.35 Aligned_cols=184 Identities=8% Similarity=0.045 Sum_probs=86.5
Q ss_pred EEEEEECCCCCEEEEEEC------------CCCEEEEECCCCCEEE-EECCCC-------CCEEEEEE--CCCCC-EEEE
Q ss_conf 699999389998999978------------9909999099983389-870379-------88899999--17999-8999
Q 006497 75 INRVLWTPTGRRLITGSQ------------SGEFTLWNGQSFNFEM-ILQAHD-------HAIRSMVW--SHNDN-WMVS 131 (643)
Q Consensus 75 I~~i~~spdg~~L~tgs~------------dg~I~iwd~~~~~~~~-~l~~h~-------~~V~~i~~--s~~~~-~L~s 131 (643)
--.|+..+++..+++++. .|.|.++|+.+.+... .+.... -.-..+.. ..++. +|++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v 116 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 116 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred CCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEECCCEEEEECCCCCEEEEE
T ss_conf 42079979986999965755777778878887699996688998526888517987776364464257885899689999
Q ss_pred EE---CCCCEEEEECCCCC--EEE--EE-CCCCCCEEEEEEECCCCEEEEEEC---------------CCCEEEEECCCC
Q ss_conf 95---99949999779980--578--53-488888579999459998999949---------------991999977998
Q 006497 132 GD---DGGAIKYWQNNMNN--VKA--NK-SAHKESVRDLSFCRTDLKFCSCSD---------------DTTVKVWDFARC 188 (643)
Q Consensus 132 g~---~dg~I~iwd~~~~~--~~~--~~-~~~~~~I~~l~~s~d~~~l~s~s~---------------dg~I~iwdl~~~ 188 (643)
.. ...+|.+|++.... ... .. .......+++++..++..+++-.. -....+|.....
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~ 196 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 196 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred EECCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEECCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 82667876069999967997499996037865467552699669978996376676704555567634884038987698
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEE-ECCCCEEEEECCCCCEEEE--ECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 2456860269884899995999989999-7899099998899931679--636898679999949999999997
Q 006497 189 QEERSLTGHGWDVKSVDWHPTKSLLVSG-GKDSLVKLWDAKSGRELCS--FHGHKNMVLCVKWNQNGNWVLTAS 259 (643)
Q Consensus 189 ~~~~~~~~~~~~V~~i~~sp~~~~l~sg-~~dg~I~iwd~~s~~~~~~--~~~~~~~i~~i~~sp~g~~l~s~s 259 (643)
+...... .-...+.|++++|+++|+++ +..+.|++|++.....+.. ........-.+.+.+.+..++++.
T Consensus 197 ~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 197 DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp CEEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CEEEECC-CCCCCCEEEECCCCCEEEEEECCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEECCCCEEEEEE
T ss_conf 4299767-887464348889999999996788939999968986342678731898997129906988799998
|
| >d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cytochrome c superfamily: Cytochrome c family: monodomain cytochrome c domain: Cytochrome c2 species: Rhodospirillum centenum [TaxId: 34018]
Probab=81.06 E-value=0.42 Score=18.96 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=32.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC
Q ss_conf 0799988999999999888888-778866577433576
Q 006497 384 RMPGNFPLPEGPTTPGPFAPGL-TRNEGTIPGVGVAMP 420 (643)
Q Consensus 384 ~~~~~~~~~~~~~~~g~~~~~~-~r~~g~v~gy~~s~~ 420 (643)
|..||..........||.|.++ +|..+++++|.||..
T Consensus 13 C~~CH~v~~~~~~~iGP~L~gi~~R~~g~~~g~~Ys~~ 50 (118)
T d1jdla_ 13 CMACHRVGPDAKNLVGPALTGVIDRQAGTAPGFNYSAI 50 (118)
T ss_dssp TTTTCCCSTTCCCSSSCCCTTCTTCBTTCCTTCCCCHH
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 79867868888888897615706765576555135389
|