Citrus Sinensis ID: 006499

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---

MPGSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

ccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccEEEEccccccccccHHHHHHHHccccccccccEEEccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHcccccccEEEEEccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHccccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccccEEEcccccccccccccccEEEccccccccc

ccccccHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccccccEEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHcccccEEEccccHHHHcccccccEEEEccccEEEcc

mpgssaldvLTEDLLVRVREKIGDELDSKTWRLVCKEfsrvdsvtrttLRVLRVEFLFILLdkypyiktldlsvcprvndgtVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARAcpllesvdlsyccgfgdREAAALSFASGlkevkldkclnvtdVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYlkltndsfcSIATLAKLESLVmvgcpcvddtglrflesgcpLLKTIFVSRCKFVSSTGLISVIRghsgllqldaghcFSELSTTLLHHMRDLKNLeaitmdgarisdscfQTISFNCKSLVEIGLSkclgvtntgITQLVSGCvnlktidltcchsiTDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLrleeidltdcngvndkgLEYLSRCSELLFLKLGLcenisdkglfyIASNClriqgldlykcsgigddGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLkhcakiddSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAagckirwd

mpgssaldvlteDLLVRVREkigdeldsktwrlvckefsrvdsvtrttlrvLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILetlhaagckirwd

MPGSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIdllckkcldlksldVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

*******DVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRW*

****SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

**GSSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKYPYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		643	2.2.26 [Sep-21-2011]
Q8RWU5		665	F-box/LRR-repeat protein	no	no	0.979	0.947	0.385	1e-100
Q9C5D2		610	F-box/LRR-repeat protein	no	no	0.692	0.729	0.296	2e-39
Q9SKK0		628	EIN3-binding F-box protei	no	no	0.654	0.670	0.276	3e-30
Q96IG2		436	F-box/LRR-repeat protein	yes	no	0.485	0.715	0.262	3e-29
Q58DG6		436	F-box/LRR-repeat protein	yes	no	0.485	0.715	0.262	3e-29
Q9CZV8		436	F-box/LRR-repeat protein	yes	no	0.472	0.697	0.266	5e-29
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.461	0.702	0.281	6e-29
Q9UKC9		423	F-box/LRR-repeat protein	no	no	0.461	0.702	0.281	8e-29
Q8BH16		423	F-box/LRR-repeat protein	no	no	0.463	0.704	0.279	2e-28
A6H779		423	F-box/LRR-repeat protein	no	no	0.461	0.702	0.281	4e-28

>sp\|Q8RWU5\|FBL3_ARATH F-box/LRR-repeat protein 3 OS=Arabidopsis thaliana GN=FBL3 PE=2 SV=1	Back alignment and function desciption

 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 246/638 (38%), Positives = 377/638 (59%), Gaps = 8/638 (1%)

Query: 6   ALDVLTEDLLVRVREKIG-DELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKY 64
             D+L+E+L+  + + I  +  D K++ L CK F +++S  R +L+ LR ++L  +L +Y
Sbjct: 12  PFDLLSEELVFIILDLISPNPSDLKSFSLTCKSFYQLESKHRGSLKPLRSDYLPRILTRY 71

Query: 65  PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLL 124
                LDL+ CPRV D    + LS +      +L+SL LSRS      GL  LA  C  L
Sbjct: 72  RNTTDLDLTFCPRVTD----YALSVVGCLSGPTLRSLDLSRSGSFSAAGLLRLALKCVNL 127

Query: 125 ESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCM 184
             +DLS      D +AA ++ A  L+ +KL +C  +TD+G+  IAV C  L  +SLKWC+
Sbjct: 128 VEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGCIAVGCKKLNTVSLKWCV 187

Query: 185 EISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFL 244
            + DLG+ LL  KC D+++LD+SYL +T      I  L  LE L++ GC  VDD  L+ L
Sbjct: 188 GVGDLGVGLLAVKCKDIRTLDLSYLPITGKCLHDILKLQHLEELLLEGCFGVDDDSLKSL 247

Query: 245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304
              C  LK +  S C+ ++  GL S++ G   L +LD  HC S +S      ++ +  L+
Sbjct: 248 RHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCSSVISLDFASSLKKVSALQ 307

Query: 305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHS 364
           +I +DG  ++    + I   C SL E+ LSKC+ VT+ G++ LV    +L+ +D+TCC  
Sbjct: 308 SIRLDGCSVTPDGLKAIGTLCNSLKEVSLSKCVSVTDEGLSSLVMKLKDLRKLDITCCRK 367

Query: 365 ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEY 424
           ++  +I+ IA+SC  LV LK+ESC++++ +  + +G  C  LEE+DLTD N ++D+GL+ 
Sbjct: 368 LSRVSITQIANSCPLLVSLKMESCSLVSREAFWLIGQKCRLLEELDLTD-NEIDDEGLKS 426

Query: 425 LSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 484
           +S C  L  LKLG+C NI+DKGL YI   C  ++ LDLY+  GI D G++ ++ GC  L+
Sbjct: 427 ISSCLSLSSLKLGICLNITDKGLSYIGMGCSNLRELDLYRSVGITDVGISTIAQGCIHLE 486

Query: 485 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAK 544
            +N+SYC ++TD+ +  +     L   E RG   ITS GL A+A  CKRLA +DLK C  
Sbjct: 487 TINISYCQDITDKSLVSLSKCSLLQTFESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPS 546

Query: 545 IDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELA 604
           I+D+G  ALA++SQNL+QIN+S  A++++ L + + N+  LQ+  +V+ +     G   A
Sbjct: 547 INDAGLLALAHFSQNLKQINVSDTAVTEVGL-LSLANIGCLQNIAVVNSSGLRPSGVAAA 605

Query: 605 LRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRW 642
           L   C  ++K KL A +R LL   ++  L A GC   W
Sbjct: 606 LLG-CGGLRKAKLHASLRSLLPLSLIHHLEARGCAFLW 642

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9C5D2\|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1	Back alignment and function description

>sp\|Q9SKK0\|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1	Back alignment and function description

>sp\|Q96IG2\|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2	Back alignment and function description

>sp\|Q58DG6\|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		643
224123030		646	predicted protein [Populus trichocarpa]	0.995	0.990	0.698	0.0
224123854		646	predicted protein [Populus trichocarpa]	0.995	0.990	0.694	0.0
356505803		641	PREDICTED: F-box/LRR-repeat protein 3-li	0.996	1.0	0.678	0.0
356572954		641	PREDICTED: F-box/LRR-repeat protein 3-li	0.996	1.0	0.670	0.0
255542802		644	ubiquitin-protein ligase, putative [Rici	1.0	0.998	0.700	0.0
296089716		643	unnamed protein product [Vitis vinifera]	1.0	1.0	0.678	0.0
357511813		679	F-box/LRR-repeat protein [Medicago trunc	0.981	0.929	0.648	0.0
449435625		640	PREDICTED: F-box/LRR-repeat protein 3-li	0.993	0.998	0.610	0.0
449485666		640	PREDICTED: F-box/LRR-repeat protein 3-li	0.993	0.998	0.608	0.0
297808737		642	F-box family protein [Arabidopsis lyrata	0.992	0.993	0.620	0.0

>gi\|224123030\|ref\|XP_002318976.1\| predicted protein [Populus trichocarpa] gi\|222857352\|gb\|EEE94899.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  877 bits (2266), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/641 (69%), Positives = 522/641 (81%), Gaps = 1/641 (0%)

Query: 4   SSALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDK 63
           +  L VLTEDLL+RV EK+  + D K WRL+CKEF RVDS+TR TLRVL VEFL  LL  
Sbjct: 6   TPILSVLTEDLLIRVNEKLVQDSDRKIWRLICKEFHRVDSITRKTLRVLHVEFLPTLLKN 65

Query: 64  YPYIKTLDLSVCPRVNDGTVSFLLSQLSLS-WTRSLKSLILSRSTGLRYRGLEMLARACP 122
           Y  + TLDLSVCP + DGT++ LL ++  S W R+LK L L R+ GL++ GLEML  AC 
Sbjct: 66  YTNLLTLDLSVCPCIEDGTITLLLHRVDHSMWARNLKFLNLRRANGLKFAGLEMLVGACK 125

Query: 123 LLESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKW 182
            LESVD+SYC GFGDREAAA+S   GLKE+ +DKCL V+DVGLAKI V C  L RLSLKW
Sbjct: 126 GLESVDVSYCRGFGDREAAAISGCGGLKELSMDKCLGVSDVGLAKIVVGCGRLVRLSLKW 185

Query: 183 CMEISDLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLR 242
           CMEISDLG++LLCKKCL+LK LDVSYLK+T+DS  SIA L KLE L MVGCP V+D GL+
Sbjct: 186 CMEISDLGVELLCKKCLELKFLDVSYLKVTSDSLRSIAALPKLEDLAMVGCPLVNDVGLQ 245

Query: 243 FLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302
           FLE+GCPLL+ I VSRC  VSS GL ++IRGH+GLLQ+DAG+  SE S   +  M++LKN
Sbjct: 246 FLENGCPLLQKIDVSRCDCVSSYGLSALIRGHNGLLQIDAGYTISEFSANFVECMQELKN 305

Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
           L AI +DGAR+SD+ FQTIS NC+SL+EIGLSKC GVTN  I QLVSGCVNLKTI+LTCC
Sbjct: 306 LNAIIIDGARVSDTVFQTISNNCRSLIEIGLSKCTGVTNMRIMQLVSGCVNLKTINLTCC 365

Query: 363 HSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGL 422
            SITD AISAIADSCR L+CLK+ESCNMITEK L QLGS C  LE++DLTDC G+ND+GL
Sbjct: 366 RSITDAAISAIADSCRNLLCLKLESCNMITEKSLEQLGSHCALLEDLDLTDCFGINDRGL 425

Query: 423 EYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKK 482
           E LSRCS LL LKLGLC NISD GLFYIASNC ++  LDLY+C GIGDDGLAALS+GCKK
Sbjct: 426 ERLSRCSRLLCLKLGLCTNISDTGLFYIASNCSQLHELDLYRCMGIGDDGLAALSSGCKK 485

Query: 483 LKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHC 542
           L+KLNLSYC+ VTD+GME + ++E LSDLELR L KIT  GLTAL   CKRL  LDLKHC
Sbjct: 486 LRKLNLSYCIEVTDKGMESLGYLEVLSDLELRALDKITGVGLTALVTRCKRLTYLDLKHC 545

Query: 543 AKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFE 602
            K+DD+GFWALAYYS+NLRQINLSYC+++DMALCMVMGN+TRLQDA LVHL N T EGF+
Sbjct: 546 KKVDDTGFWALAYYSRNLRQINLSYCSITDMALCMVMGNLTRLQDADLVHLRNVTVEGFD 605

Query: 603 LALRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD 643
           LALR+CC+RIKKVKL+A + FLLSSE+L  LHA GC+IRWD
Sbjct: 606 LALRACCVRIKKVKLVAALGFLLSSEVLGILHARGCRIRWD 646

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224123854\|ref\|XP_002330225.1\| predicted protein [Populus trichocarpa] gi\|222871681\|gb\|EEF08812.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356505803\|ref\|XP_003521679.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356572954\|ref\|XP_003554630.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max]	Back alignment and taxonomy information

>gi\|255542802\|ref\|XP_002512464.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223548425\|gb\|EEF49916.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|296089716\|emb\|CBI39535.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357511813\|ref\|XP_003626195.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355501210\|gb\|AES82413.1\| F-box/LRR-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449435625\|ref\|XP_004135595.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449485666\|ref\|XP_004157239.1\| PREDICTED: F-box/LRR-repeat protein 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297808737\|ref\|XP_002872252.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297318089\|gb\|EFH48511.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		643
TAIR\|locus:2143320		642	AT5G27920 "AT5G27920" [Arabido	0.990	0.992	0.600	4.4e-203
TAIR\|locus:2149805		665	AT5G01720 "AT5G01720" [Arabido	0.976	0.944	0.375	7.8e-110
TAIR\|locus:505006471		610	AT4G15475 "AT4G15475" [Arabido	0.844	0.890	0.265	3.1e-44
UNIPROTKB\|F1NHD2		423	FBXL2 "Uncharacterized protein	0.530	0.806	0.281	1.4e-33
ZFIN\|ZDB-GENE-030131-5920		411	fbxl14a "F-box and leucine-ric	0.502	0.785	0.282	1.4e-33
MGI\|MGI:1919444		436	Fbxl20 "F-box and leucine-rich	0.494	0.729	0.304	2.9e-33
UNIPROTKB\|Q58DG6		436	FBXL20 "F-box/LRR-repeat prote	0.494	0.729	0.304	2.9e-33
UNIPROTKB\|Q96IG2		436	FBXL20 "F-box/LRR-repeat prote	0.494	0.729	0.304	2.9e-33
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.421	0.642	0.299	3.7e-33
UNIPROTKB\|A6H779		423	FBXL2 "F-box/LRR-repeat protei	0.452	0.687	0.291	3.7e-33

TAIR\|locus:2143320 AT5G27920 "AT5G27920" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
 Identities = 384/639 (60%), Positives = 486/639 (76%)

Query:     5 SALDVLTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFILLDKY 64
             S L VL+EDLLVRV E + D    KTWRL+ K+F RVDS+TRTT+R+LRVEFL  LL KY
Sbjct:     6 SILSVLSEDLLVRVYECL-DPPCRKTWRLISKDFLRVDSLTRTTIRILRVEFLPTLLFKY 64

Query:    65 PYIKTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLL 124
             P + +LDLSVCP+++D  V  L    ++S T  +KSL LSRST +R RGLE LAR C  L
Sbjct:    65 PNLSSLDLSVCPKLDDDVVLRLALDGAIS-TLGIKSLNLSRSTAVRARGLETLARMCHAL 123

Query:   125 ESVDLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCM 184
             E VD+S+C GFGDREAAALS A+GL+E+K+DKCL+++DVGLA+I V C NL ++SLKWCM
Sbjct:   124 ERVDVSHCWGFGDREAAALSSATGLRELKMDKCLSLSDVGLARIVVGCSNLNKISLKWCM 183

Query:   185 EISDLGIXXXXXXXXXXXXXXVSYLKLTNDSFCSIATLAKLESLVMVGCPCVDDTGLRFL 244
             EISDLGI              VSYLK+TNDS  SIA L KLE L MV CP +DD GL+FL
Sbjct:   184 EISDLGIDLLCKICKGLKSLDVSYLKITNDSIRSIALLVKLEVLDMVSCPLIDDGGLQFL 243

Query:   245 ESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKNLE 304
             E+G P L+ + V+RC  VS +GLIS++RGH  +  L A HC SE+S + L +++ LK+L+
Sbjct:   244 ENGSPSLQEVDVTRCDRVSLSGLISIVRGHPDIQLLKASHCVSEVSGSFLKYIKGLKHLK 303

Query:   305 AITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHS 364
              I +DGA +SDS   ++S +C+SL+EIGLS+C+ VT+ G+  L   C+NLKT++L CC  
Sbjct:   304 TIWIDGAHVSDSSLVSLSSSCRSLMEIGLSRCVDVTDIGMISLARNCLNLKTLNLACCGF 363

Query:   365 ITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEY 424
             +TD AISA+A SCR L  LK+ESC++ITEKGL  LG + + ++E+DLTDC GVND+GLEY
Sbjct:   364 VTDVAISAVAQSCRNLGTLKLESCHLITEKGLQSLGCYSMLVQELDLTDCYGVNDRGLEY 423

Query:   425 LSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLK 484
             +S+CS L  LKLGLC NISDKG+F+I S C ++  LDLY+C+G GDDGLAALS GCK L 
Sbjct:   424 ISKCSNLQRLKLGLCTNISDKGIFHIGSKCSKLLELDLYRCAGFGDDGLAALSRGCKSLN 483

Query:   485 KLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRLADLDLKHCAK 544
             +L LSYC  +TD G+E IR +E LS LELRGL  IT  GL A+A+GCK+L  LD+K C  
Sbjct:   484 RLILSYCCELTDTGVEQIRQLELLSHLELRGLKNITGVGLAAIASGCKKLGYLDVKLCEN 543

Query:   545 IDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELA 604
             IDDSGFWALAY+S+NLRQINL  C++SD ALCM+M N++R+QD  LVHL+  T EGFE A
Sbjct:   544 IDDSGFWALAYFSKNLRQINLCNCSVSDTALCMLMSNLSRVQDVDLVHLSRVTVEGFEFA 603

Query:   605 LRSCCMRIKKVKLLAPIRFLLSSEILETLHAAGCKIRWD 643
             LR+CC R+KK+KLLAP+RFLLSSE+LETLHA GC+IRWD
Sbjct:   604 LRACCNRLKKLKLLAPLRFLLSSELLETLHARGCRIRWD 642

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR\|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-5920 fbxl14a "F-box and leucine-rich repeat protein 14a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1919444 Fbxl20 "F-box and leucine-rich repeat protein 20" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96IG2 FBXL20 "F-box/LRR-repeat protein 20" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		643
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-17
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-16
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-13
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-13
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-10
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	6e-10
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	4e-09
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	2e-04
smart00367		26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	0.002

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 80.4 bits (199), Expect = 4e-17
 Identities = 51/178 (28%), Positives = 81/178 (45%), Gaps = 27/178 (15%)

Query: 347 LVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRL 406
            +S C  LK + L     I D+ + A+A SC  L  L + +C  IT+ G+  L + C +L
Sbjct: 47  QLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKL 106

Query: 407 EEIDLTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS 466
           + I+L                              I+D  L  +  NC  +Q +    C 
Sbjct: 107 QTINLGRHRN----------------------GHLITDVSLSALGKNCTFLQTVGFAGC- 143

Query: 467 GIGDDGLAALSNGC-KKLKKLNLSYCVNVTDRGMEHI---RFIEDLSDLELRGLTKIT 520
            + D G+  L++GC K L++L+L+ C N+TD+ +  I    +  +LS LE RG   IT
Sbjct: 144 DVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLIT 201

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		643
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
KOG4341		483	consensus F-box protein containing LRR [General fu	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.96
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.91
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.82
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.67
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.67
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.59
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.55
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.55
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.55
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.53
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.45
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.41
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.41
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.4
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.27
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.12
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.02
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.83
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.82
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.79
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.76
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.76
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.73
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.73
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.7
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.59
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.5
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.44
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.44
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.37
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.36
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.34
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.32
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.29
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.26
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.21
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.17
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.15
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	97.98
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.86
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	97.85
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.67
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.57
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.53
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.5
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.19
PRK15386		426	type III secretion protein GogB; Provisional	97.09
KOG4308		478	consensus LRR-containing protein [Function unknown	97.05
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.0
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.89
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.89
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.83
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.68
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.63
KOG4308		478	consensus LRR-containing protein [Function unknown	96.6
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.55
PLN03150		623	hypothetical protein; Provisional	96.4
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	96.38
PLN03150		623	hypothetical protein; Provisional	96.34
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.2
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.18
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.85
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.69
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	95.55
KOG2997		366	consensus F-box protein FBX9 [General function pre	95.14
PRK15386		426	type III secretion protein GogB; Provisional	95.13
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	95.12
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	95.11
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.05
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.73
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.02
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	93.84
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	91.59
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	91.41
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	91.38
PF13013		109	F-box-like_2: F-box-like domain	91.06
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.06
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.42
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.28
KOG0274		537	consensus Cdc4 and related F-box and WD-40 protein	84.97
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.39
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.67
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.47

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=1.3e-33  Score=254.75  Aligned_cols=333  Identities=28%  Similarity=0.509  Sum_probs=301.9

Q ss_pred             CccEEEcCCC-ccCHHHHHHHHhcCCCCcEEeccCCCCCCHHHHHHHHhCCCCCcEEecCCCCCCChHHHHHHHhcCCCC
Q 006499          302 NLEAITMDGA-RISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGL  380 (643)
Q Consensus       302 ~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L  380 (643)
                      .|+.|.+.|+ .+.+..+..+...||++++|.+.+|..+++.....+.+.|++|+++++..|..+++..+..+++.|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            5777888887 466778888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             cEEeccCCCCCCHHHHHHHhhcCCCccEEEcCCCCCCchhhhhhhc-cCCCCcEeccCCCCCCChHHHHHHHhcCCCCcE
Q 006499          381 VCLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLS-RCSELLFLKLGLCENISDKGLFYIASNCLRIQG  459 (643)
Q Consensus       381 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~c~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  459 (643)
                      ++++++.|+.+.+.+++.+.+.+..++.+...+|.......+..+. .++.+..+++..|..++|.++..+...+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            9999999999999999999999999999999999888877766655 478889999999999999999999999999999


Q ss_pred             EecCCCCCCChHHHHHHHhcCCCCCEEecCCCCCCChHHHHHhh-cCCCCCeEeecCCCCcCHHHHHHHHhcCCcCcEEe
Q 006499          460 LDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIR-FIEDLSDLELRGLTKITSAGLTALAAGCKRLADLD  538 (643)
Q Consensus       460 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  538 (643)
                      |..++|..+++..+..+..++++|+.+.+..|..+++..+..++ +++.|+.+++.+|..+.+..+..+..+|+.|++|.
T Consensus       299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence            99999999999999999999999999999999999999999998 69999999999999888888888888999999999


Q ss_pred             cCCCCCCChHHHHHHHh---hcccCCeEEeccCC-CCHHHHHHHHhhcccccccccccCCCCCHHHHHHHHHhcCCCCce
Q 006499          539 LKHCAKIDDSGFWALAY---YSQNLRQINLSYCA-LSDMALCMVMGNMTRLQDAKLVHLTNCTREGFELALRSCCMRIKK  614 (643)
Q Consensus       539 l~~~~~i~~~~~~~~~~---~~~~L~~L~l~~~~-l~~~~~~~~l~~~~~L~~L~l~~c~~~~~~~~~~~~~~~c~~l~~  614 (643)
                      ++.|..++|.++..+..   ....|..+.+++|+ +++... ..+..|+.|+.+++.+|.+++.+++.++..    ++-+
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~c~~Leri~l~~~q~vtk~~i~~~~~----~lp~  453 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSICRNLERIELIDCQDVTKEAISRFAT----HLPN  453 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHhhCcccceeeeechhhhhhhhhHHHHh----hCcc
Confidence            99999999998877763   45689999999999 777677 999999999999999999999999988643    4566


Q ss_pred             eEecchhhhccCHHHHHHhhhhcee
Q 006499          615 VKLLAPIRFLLSSEILETLHAAGCK  639 (643)
Q Consensus       615 l~l~~~~~~~~~~~~~~~~~~~~~~  639 (643)
                      +.+|+++++..||+++.+++++.|+
T Consensus       454 i~v~a~~a~~t~p~~v~~~~~~v~r  478 (483)
T KOG4341|consen  454 IKVHAYFAPVTPPGFVKGLHQRVCR  478 (483)
T ss_pred             ceehhhccCCCCccccccchhhccc
Confidence            6778899999999999999887764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		643
3ogk_B		592	Structure Of Coi1-Ask1 In Complex With Coronatine A		2e-09
2p1m_B		594	Tir1-ask1 Complex Structure Length = 594		8e-07
1fs2_A		272	Insights Into Scf Ubiquitin Ligases From The Struct		2e-06
1fqv_A		336	Insights Into Scf Ubiquitin Ligases From The Struct		2e-06

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Back alignment and structure

Iteration: 1

Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 158/364 (43%), Gaps = 62/364 (17%) Query: 251 LKTIFVSRCKFVSSTGLISVI---RGHSGLLQLDAGHCFSELSTTLLH----HMRDLKNL 303 L+T+ + +C ++ GL+S++ R LL ++ FSE LH H L+ L Sbjct: 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS--FSEKDGKWLHELAQHNTSLEVL 197 Query: 304 EAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCH 363 + A+IS +TI+ NC+SLV + V + I +LV ++ C Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSV------KVGDFEILELVGFFKAAANLEEFCGG 251 Query: 364 SITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLG-------------SFCLRLEEID 410 S+ +D + + + N++ + L +LG F ++ ++D Sbjct: 252 SLNED------------IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 Query: 411 LTDCNGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDLYKCS---G 467 L + + +C L L+ I D+GL +A C +++ L + + + G Sbjct: 300 LLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQG 357 Query: 468 IGDD-------GLAALSNGCKKLKKLNLSYCVNVTDRGMEHI-RFIEDLSDLELRGL--- 516 + D+ GL AL+ GC++L+ + + Y ++T+ +E I ++++L D L L Sbjct: 358 MEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 Query: 517 TKIT----SAGLTALAAGCKRLADLDLK-HCAKIDDSGFWALAYYSQNLRQINLSYCALS 571 +IT G+ +L GCK+L + D G + YS N+R + L Y S Sbjct: 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES 476 Query: 572 DMAL 575 D L Sbjct: 477 DEGL 480

PyMOL of 3ogk

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Back alignment and structure

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Back alignment and structure

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		643
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-78
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-26
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	5e-62
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-31
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-20
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-37
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	1e-29
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	3e-28
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-26
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-10
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-22
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-20
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-18
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-19
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	8e-14
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-11
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-07
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-05
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-15
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-10
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-05
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	1e-10
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	2e-10
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	7e-09
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-08
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-04
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	6e-04
1o6v_A		466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A		466	Internalin A; bacterial infection, extracellular r	3e-06
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	4e-06
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	9e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-05
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	1e-04
1h6t_A		291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-04
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	6e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

 Score =  260 bits (666), Expect = 1e-78
 Identities = 118/600 (19%), Positives = 215/600 (35%), Gaps = 99/600 (16%)

Query: 10  LTEDLLVRVREKIGDELDSKTWRLVCKEFSRVDSVTRTTLRVLRVEFLFI--LLDKYPYI 67
             E++L  V   I  + D  +  LVCK +  ++   R  + +     +    ++ ++P +
Sbjct: 9   FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKV 68

Query: 68  KTLDLSVCPRVNDGTVSFLLSQLSLSWTRSLKSLILSRSTGLRYRGLEMLARACPLLESV 127
           ++++L   P   D                   +L+     G  Y  +E ++ +   LE +
Sbjct: 69  RSVELKGKPHFAD------------------FNLVPDGWGGYVYPWIEAMSSSYTWLEEI 110

Query: 128 DLSYCCGFGDREAAALSFASGLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEIS 187
            L                              VTD  L  IA    N + L L  C   S
Sbjct: 111 RLKRMV--------------------------VTDDCLELIAKSFKNFKVLVLSSCEGFS 144

Query: 188 DLGIDLLCKKCLDLKSLDVSYLKLTNDSFCSIATLAK----LESLVMVGCPC-VDDTGLR 242
             G+  +   C +LK LD+    + + S   ++        L SL +      V  + L 
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204

Query: 243 FLESGCPLLKTIFVSRCKFVSSTGLISVIRGHSGLLQLDAGHCFSELSTTLLHHMRDLKN 302
            L + CP LK++ ++R   V    L ++++    L +L  G   +E+   +   +     
Sbjct: 205 RLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL----- 257

Query: 303 LEAITMDGARISDSCFQTISFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCC 362
                                 CK L    LS         +  + S C  L T++L+  
Sbjct: 258 ----------------SVALSGCKELRC--LSGFWDAVPAYLPAVYSVCSRLTTLNLSYA 299

Query: 363 HSITDDAISAIADSCRGLVCLKIESCNMITEKGLYQLGSFCLRLEEIDLTD--------C 414
             +    +  +   C  L  L +   + I + GL  L S C  L E+ +           
Sbjct: 300 T-VQSYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356

Query: 415 NGVNDKGLEYLSRCSELLFLKLGLCENISDKGLFYIASNCLRIQGLDL---------YKC 465
             + ++GL  +S     L   L  C  +++  L  IA N   +    L         Y  
Sbjct: 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416

Query: 466 SGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRGMEHIRFIEDLSDLELRGLTKITSAGLT 525
               D G  A+   CK L++L+LS  +  TD+  E+I       ++        +  G+ 
Sbjct: 417 LEPLDIGFGAIVEHCKDLRRLSLSGLL--TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH 474

Query: 526 ALAAGCKRLADLDLKHCAKIDDSGFWALAYYSQNLRQINLSYCALSDMALCMVMGNMTRL 585
            + +GC  L  L+++ C   D     A A   + +R + +S C++S  A  ++   M +L
Sbjct: 475 HVLSGCDSLRKLEIRDCPFGDK-ALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533

PyMOL of 2p1m

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		643
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-09
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 44/216 (20%), Positives = 86/216 (39%), Gaps = 9/216 (4%)

Query: 322 SFNCKSLVEIGLSKCLGVTNTGITQLVSGCVNLKTIDLTCCHSITDDAISAIADSCRGLV 381
            F+   +  + LS    +  + +  ++S C  L+ + L     ++D  ++ +A     LV
Sbjct: 42  HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLV 98

Query: 382 CLKIESCNMITEKGLYQLGSFCLRLEEIDLTDCNGVNDKGLEYLSRCSELLFLK---LGL 438
            L +  C+  +E  L  L S C RL+E++L+ C    +K ++           +    G 
Sbjct: 99  RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158

Query: 439 CENISDKGLFYIASNCLRIQGLDLYKCSGIGDDGLAALSNGCKKLKKLNLSYCVNVTDRG 498
            +N+    L  +   C  +  LDL     + +D           L+ L+LS C ++    
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPET 217

Query: 499 MEHIRFIEDLSDLELRGLTKITSAGLTALAAGCKRL 534
           +  +  I  L  L++ G+  +    L  L      L
Sbjct: 218 LLELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHL 251

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		643
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	100.0
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	100.0
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.89
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.88
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.64
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.63
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.59
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.52
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.41
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.41
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.24
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.22
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.21
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	99.2
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	99.16
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.15
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.12
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.08
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.0
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.92
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.86
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	98.82
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.78
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.73
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.21
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.16
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-29  Score=153.21  Aligned_cols=108  Identities=16%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             CCCEEECCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHH---HHHCCCCCEEEECCCCCCHHHHHHHHC---
Q ss_conf             97578458887656475999997189865883476678538999999---971988758982587459378998515---
Q 006499          148 GLKEVKLDKCLNVTDVGLAKIAVRCVNLERLSLKWCMEISDLGIDLL---CKKCLDLKSLDVSYLKLTNDSFCSIAT---  221 (643)
Q Consensus       148 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~~---  221 (643)
                      +|+.|+++. ..+++.++..+...+++++.|.+.+| .+++.+...+   .+.+++|++|+++++.+++.++..+..   
T Consensus         3 ~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEEEC-CCCCHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHH
T ss_conf             877798208-95886899999976779999982899-9988999999999853999888979598597289999999984


Q ss_pred             --CCCCCEEEECCCCCCCHHHHHHHHH---CCCCCCEEEECC
Q ss_conf             --8888668724898888114999975---399974998506
Q 006499          222 --LAKLESLVMVGCPCVDDTGLRFLES---GCPLLKTIFVSR  258 (643)
Q Consensus       222 --~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~  258 (643)
                        ..+|+.|++.+| .+++.+...+..   .+++|+.|++.+
T Consensus        81 ~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1          81 TPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSD  121 (460)
T ss_dssp             STTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCS
T ss_pred             CCCCCCCEEECCCC-CCCCCCCCCCCCHHHCCCCCCCCCCCC
T ss_conf             37887788778887-754322101211000034320024443

PyMOL of d1z7xw1

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure