Citrus Sinensis ID: 006503

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTMEQ
ccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHcccHHHHHcccEEEEEEEEEEccccccEEEEEEccccccHHHHHHHHHcccccccccccccccccccccEEEEEccEEEEEEEEccccccEEEEEEEHHHHHHHcccccEEEcccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccEEEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccHHHccccEEEccccccccccccccEEEEEEEEcccccccccccEEEccccccccEEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccEEEcHHHHccccccccHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHcccccccccccEEEcccccccccccccccEEEEEEccccccccEEEEEHHHHHHHHcccccEEEEEccccccccccEEEEcccHHHHHHHHHHHHHccccccHHHHHHHHHHccccccEEEEEEEcEcccccEEEcccccccHEEcccccccccccccHHcccccccccccHHHHHHHHHHHHHHcccccccEEEEEccEEccHHHHHHcccccEEEEcccccccccEEEEEEEEEEEcccccccEEEEEEEEcccEEccEEEEcccccccccEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mssknekpqnvveltssddednvaagatrpqvnapaskattqqnvprqsaaaiassppvneapesrsfwkAGTYAANitikstpvqgsleharvhpkflhsnatshKWAFGAIAELLDNAVDevqngatfvkvdrvnimkdnspalvfiddgggmdpeSLRKCMslgystkkanktigqygngfktstmrlGADVIVFSratheskstqsiGLLSYTYLrktgqddvivpmidfdisghwaepiiyssqddwsFNLKTIlewspfaskSELLQQFEDIGPHGTKVIIYNLwmndegvyelsfdddeediclrdeansgslkklpkKVLERQSHISYRIRYSLRAYASMLYlgkfdnfkiilrgkpiqqfhiadelkfpkvisyrpqvsaplkdataeTTIGfikeapalsvsgfnvyhknrlirpfwkvtgdgslkgngvvgvleanfiepthdkqdfersTLFVRLESKLKQMTLEYWKAYYHLIghqlpasssynmesggsvlspvghgpdmqkqpadqhklglasnfqedmhldvpsvalqgkvrhnlengkpavqpiigiaeghdndgtpeghpvtiSADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTMEQ
mssknekpqnvveltssddednvAAGAtrpqvnapaskattqqnvPRQSAaaiassppvneaPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATfvkvdrvnimkdnSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSratheskstqsiglLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRdeansgslkklpkkvlerqshisYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIkeapalsvsgFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFiepthdkqdfersTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEarkkqktmeq
MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTMEQ
*******************************************************************FWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGG*****LRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLR**************VLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQL*******************************************************************VQPIIGIA*************VTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYV***********
********************************************************************WKAGTYA********************PKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK****TIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDE***************RQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGH*****************************PA****************************************************************************************************************************
*****************DDEDNVAAGATRPQV*********************************RSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHG**********HKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVE**********
***********************************************************NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANS**LKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQL***************************************************************************************PVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQ*****
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MSSKNEKPQNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQPADQHKLGLASNFQEDMHLDVPSVALQGKVRHNLENGKPAVQPIIGIAEGHDNDGTPEGHPVTISADQICEENIQLFIKxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAKLSAYVEARKKQKTMEQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query643 2.2.26 [Sep-21-2011]
Q14149 939 MORC family CW-type zinc yes no 0.561 0.384 0.364 6e-54
Q8TE76 937 MORC family CW-type zinc no no 0.584 0.401 0.346 2e-53
Q8BMD7 928 MORC family CW-type zinc yes no 0.575 0.398 0.352 3e-53
Q9WVL5 950 MORC family CW-type zinc no no 0.401 0.271 0.352 2e-36
Q86VD1 984 MORC family CW-type zinc no no 0.409 0.267 0.339 1e-35
Q9Y6X9 1032 MORC family CW-type zinc no no 0.410 0.255 0.310 1e-33
Q69ZX6 1030 MORC family CW-type zinc no no 0.410 0.256 0.307 2e-33
Q8C5W4 1022 MORC family CW-type zinc no no 0.410 0.258 0.294 1e-30
>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 OS=Homo sapiens GN=MORC3 PE=1 SV=3 Back     alignment and function desciption
 Score =  213 bits (541), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 142/390 (36%), Positives = 218/390 (55%), Gaps = 29/390 (7%)

Query: 96  PKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGM 155
           PKFLH+N+TSH W F A+AEL+DNA D   N A  + +D+  I  ++   L F D+G GM
Sbjct: 16  PKFLHTNSTSHTWPFSAVAELIDNAYDPDVN-AKQIWIDKTVI--NDHICLTFTDNGNGM 72

Query: 156 DPESLRKCMSLGYS---TKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIG 212
             + L K +S G+S   T   +  +G YGNGFK+ +MRLG D IVF++    +  + S+G
Sbjct: 73  TSDKLHKMLSFGFSDKVTMNGHVPVGLYGNGFKSGSMRLGKDAIVFTK----NGESMSVG 128

Query: 213 LLSYTYLRKTGQDDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELL 272
           LLS TYL     + V+VP++ F+   H     +  S+     +L  ILE S F+++ +LL
Sbjct: 129 LLSQTYLEVIKAEHVVVPIVAFN--KHRQMINLAESK----ASLAAILEHSLFSTEQKLL 182

Query: 273 QQFED-IGPHGTKVIIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQ 331
            + +  IG  GT++II+NL  + +   E  F+ D+ DI + ++ +  + KK  KK  ER 
Sbjct: 183 AELDAIIGKKGTRIIIWNL-RSYKNATEFDFEKDKYDIRIPEDLDEITGKKGYKK-QERM 240

Query: 332 SHISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPL 391
             I+    YSLRAY S+LYL      +IILRG+ ++   ++  L + +   YRP+  +  
Sbjct: 241 DQIAPESDYSLRAYCSILYLKP--RMQIILRGQKVKTQLVSKSLAYIERDVYRPKFLS-- 296

Query: 392 KDATAETTIGFIKEAPALSVSGFNVYHKNRLIRPFWKVTGD--GSLKGNGVVGVLEANFI 449
              T   T GF          G  +YH+NRLI+ + KV      +  G GVVG++E NF+
Sbjct: 297 --KTVRITFGF--NCRNKDHYGIMMYHRNRLIKAYEKVGCQLRANNMGVGVVGIIECNFL 352

Query: 450 EPTHDKQDFERSTLFVRLESKLKQMTLEYW 479
           +PTH+KQDF+ +  +    + L +   +YW
Sbjct: 353 KPTHNKQDFDYTNEYRLTITALGEKLNDYW 382

Homo sapiens (taxid: 9606)
>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2 Back     alignment and function description
>sp|Q8BMD7|MORC4_MOUSE MORC family CW-type zinc finger protein 4 OS=Mus musculus GN=Morc4 PE=2 SV=2 Back     alignment and function description
>sp|Q9WVL5|MORC1_MOUSE MORC family CW-type zinc finger protein 1 OS=Mus musculus GN=Morc1 PE=2 SV=1 Back     alignment and function description
>sp|Q86VD1|MORC1_HUMAN MORC family CW-type zinc finger protein 1 OS=Homo sapiens GN=MORC1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y6X9|MORC2_HUMAN MORC family CW-type zinc finger protein 2 OS=Homo sapiens GN=MORC2 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZX6|MOR2A_MOUSE MORC family CW-type zinc finger protein 2A OS=Mus musculus GN=Morc2a PE=1 SV=2 Back     alignment and function description
>sp|Q8C5W4|MOR2B_MOUSE MORC family CW-type zinc finger protein 2B OS=Mus musculus GN=Morc2b PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
359476856653 PREDICTED: MORC family CW-type zinc fing 0.979 0.964 0.660 0.0
297735065641 unnamed protein product [Vitis vinifera] 0.965 0.968 0.663 0.0
224134194627 predicted protein [Populus trichocarpa] 0.909 0.933 0.658 0.0
255585977561 zinc finger protein, putative [Ricinus c 0.838 0.960 0.643 0.0
449457622550 PREDICTED: MORC family CW-type zinc fing 0.835 0.976 0.605 0.0
30690622626 histidine kinase-like ATPase domain-cont 0.934 0.960 0.557 0.0
297798278623 hypothetical protein ARALYDRAFT_491004 [ 0.863 0.890 0.574 0.0
27754645626 unknown protein [Arabidopsis thaliana] 0.934 0.960 0.557 0.0
297798276631 predicted protein [Arabidopsis lyrata su 0.902 0.919 0.591 0.0
449500046516 PREDICTED: MORC family CW-type zinc fing 0.786 0.980 0.611 0.0
>gi|359476856|ref|XP_002267687.2| PREDICTED: MORC family CW-type zinc finger protein 3 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/657 (66%), Positives = 517/657 (78%), Gaps = 27/657 (4%)

Query: 1   MSSKNEKP-QNVVELTSSDDEDNVAAGATRPQVNAPASKATTQQNVPRQSAAAIASSPPV 59
           MS K EK   +VVE+ SSDDE  V        V   +++      V +Q+   +   PP 
Sbjct: 4   MSLKPEKEGMDVVEIASSDDEGGVG-------VERRSNQQVQTDQVGQQTVVPL---PPA 53

Query: 60  NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDN 119
            E P SRSFWKAG Y  N   K TP    LEHARVHPKFLHSNATSHKWAFGAIAELLDN
Sbjct: 54  -EPPLSRSFWKAGAYD-NTPSKLTPAPDQLEHARVHPKFLHSNATSHKWAFGAIAELLDN 111

Query: 120 AVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTKKANKTIGQ 179
           AVDE+ NGATFVK+DR++  KDNSPAL+F DDGGGMDPES+RKCMSLGYS+KK+N TIGQ
Sbjct: 112 AVDEICNGATFVKLDRIDNRKDNSPALLFQDDGGGMDPESIRKCMSLGYSSKKSNTTIGQ 171

Query: 180 YGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQDDVIVPMIDFDISGH 239
           YGNGFKTSTMRLGADVIVFSRA+  S++TQSIGLLSYT+LR+TGQDDVIVPM+DFDIS H
Sbjct: 172 YGNGFKTSTMRLGADVIVFSRASRTSRATQSIGLLSYTFLRRTGQDDVIVPMVDFDISDH 231

Query: 240 WAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTKVIIYNLWMNDEGVYE 299
           WAEPIIYSS++DWS NLKTILEWSPFASK EL+QQFEDIGPHGTK+IIYNLW+NDEG++E
Sbjct: 232 WAEPIIYSSKEDWSTNLKTILEWSPFASKEELMQQFEDIGPHGTKIIIYNLWLNDEGIFE 291

Query: 300 LSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYASMLYLGKFDNFKI 359
           L+FDDD+EDI LRDEAN GSL K+PKKV E QSHISY IRYSLRAYAS+LYL KF NF+I
Sbjct: 292 LNFDDDDEDIRLRDEANRGSLSKVPKKVAELQSHISYCIRYSLRAYASILYLRKFTNFQI 351

Query: 360 ILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFIKEAPALSVSGFNVYHK 419
           ILRGKP+QQF+IADELK+PKV+ YRPQ +  LK+A+ ETTIGFIKEAPAL VSGFNVYHK
Sbjct: 352 ILRGKPVQQFNIADELKYPKVVIYRPQHNTALKEASMETTIGFIKEAPALGVSGFNVYHK 411

Query: 420 NRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYW 479
           NRLIRPFWKVT DGS KGNGVVGVLEANFIEP HDKQDFERS+LF+RLE+KLKQM ++YW
Sbjct: 412 NRLIRPFWKVTSDGSSKGNGVVGVLEANFIEPAHDKQDFERSSLFIRLETKLKQMLMDYW 471

Query: 480 KAYYHLIGHQLPASSSYNMESGGSVLSPVGHGPDMQKQ-PADQHKLGLASNFQEDMHLDV 538
           K+  HL+GHQ P S   NM+      SPVGH   +QKQ PA+QH +GL +N +++M+LD 
Sbjct: 472 KSNCHLMGHQPPGSRVQNMQKKHPAQSPVGHAAHIQKQLPANQHIVGLTANTKKEMNLDQ 531

Query: 539 PSVALQGKVRHNLENGK-------------PAVQPIIGIAEGHDNDGTPEGHPVTISADQ 585
           P   L   +  +++N +             PAVQPIIG+ EG   + T       IS D+
Sbjct: 532 PINCLTANLGQDVDNVQPGNRCRTSVREELPAVQPIIGLREGSFKEVTSADGSGLISVDK 591

Query: 586 ICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYVEARKKQKTME 642
           ICEENIQLF++CEEH+++E E+ Q I  LE+++ +AK KCA+LS+++E R+KQ+ ++
Sbjct: 592 ICEENIQLFMRCEEHMRKENELKQTISELERKLEEAKKKCAQLSSHLEIRRKQRILK 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297735065|emb|CBI17427.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224134194|ref|XP_002327779.1| predicted protein [Populus trichocarpa] gi|222836864|gb|EEE75257.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255585977|ref|XP_002533659.1| zinc finger protein, putative [Ricinus communis] gi|223526454|gb|EEF28730.1| zinc finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449457622|ref|XP_004146547.1| PREDICTED: MORC family CW-type zinc finger protein 4-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|30690622|ref|NP_195351.2| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] gi|58331775|gb|AAW70385.1| At4g36280 [Arabidopsis thaliana] gi|332661243|gb|AEE86643.1| histidine kinase-like ATPase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798278|ref|XP_002867023.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp. lyrata] gi|297312859|gb|EFH43282.1| hypothetical protein ARALYDRAFT_491004 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|27754645|gb|AAO22768.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297798276|ref|XP_002867022.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297312858|gb|EFH43281.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449500046|ref|XP_004160988.1| PREDICTED: MORC family CW-type zinc finger protein 4-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query643
TAIR|locus:2122254626 CRH1 "CRT1 Homologue 1" [Arabi 0.905 0.929 0.582 1.3e-182
TAIR|locus:2122264635 CRT1 "compromised recognition 0.978 0.990 0.551 5.9e-176
TAIR|locus:2011226663 DMS11 "DEFECTIVE IN MERISTEM S 0.716 0.695 0.517 7.6e-128
TAIR|locus:2163320 819 AT5G50780 [Arabidopsis thalian 0.562 0.442 0.483 4e-121
TAIR|locus:2117358707 AT4G24970 [Arabidopsis thalian 0.699 0.636 0.493 6.1e-114
TAIR|locus:2179837708 AT5G13130 [Arabidopsis thalian 0.727 0.661 0.448 1.9e-106
TAIR|locus:2122244486 AT4G36270 "AT4G36270" [Arabido 0.732 0.969 0.461 1.8e-101
UNIPROTKB|F1P2D9 926 MORC3 "Uncharacterized protein 0.581 0.403 0.367 2.5e-57
ZFIN|ZDB-GENE-030131-1502 1079 morc3a "MORC family CW-type zi 0.584 0.348 0.362 3.8e-55
UNIPROTKB|F1MFY1 960 MORC3 "Uncharacterized protein 0.594 0.397 0.347 7.9e-55
TAIR|locus:2122254 CRH1 "CRT1 Homologue 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1744 (619.0 bits), Expect = 1.3e-182, Sum P(2) = 1.3e-182
 Identities = 356/611 (58%), Positives = 445/611 (72%)

Query:    47 RQSAAAIASSPPV--NEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNAT 104
             R+SA+ IA +  +   E  E RSFWKAG Y     + +    G LEHARVHP+FLHSNAT
Sbjct:    30 RESASTIAGAATMAPRETLECRSFWKAGDYFVIPNVVTPTAPGMLEHARVHPRFLHSNAT 89

Query:   105 SHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCM 164
             SHKWAFGAIAELLDNAVDE+QNGATFVK+D++NI+KDNSPALVF DDGGGMDP  LRKCM
Sbjct:    90 SHKWAFGAIAELLDNAVDEIQNGATFVKIDKINIVKDNSPALVFQDDGGGMDPAGLRKCM 149

Query:   165 SLGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQ 224
             SLGYS+KK+N TIGQYGNGFKTSTMRLGAD IVFSR+T    STQS+G+LSYT+LRKTGQ
Sbjct:   150 SLGYSSKKSNTTIGQYGNGFKTSTMRLGADAIVFSRSTRGGTSTQSVGILSYTFLRKTGQ 209

Query:   225 DDVIVPMIDFDISGHWAEPIIYSSQDDWSFNLKTILEWSPFASKSELLQQFEDIGPHGTK 284
             DDV VPMID DIS    +PIIY S +DW+ NL+ +L+WSPF+++ ELLQQFED+G HGTK
Sbjct:   210 DDVTVPMIDIDISKERPQPIIYGSPEDWAANLEILLKWSPFSTEDELLQQFEDVGTHGTK 269

Query:   285 VIIYNLWMNDEGVYELSFDDDEEDICLRDEA-NSGSLKKLPKKVLERQSHISYRIRYSLR 343
             VIIYNLW+NDEG+YELSFDDDEEDI LRDE+ N G  K+L  K+LE +SHISY +RYSLR
Sbjct:   270 VIIYNLWLNDEGIYELSFDDDEEDIRLRDESVNDG--KRLHHKILELRSHISYHLRYSLR 327

Query:   344 AYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPLKDATAETTIGFI 403
             AYASMLYL KF NFKII+RG P++QF+IAD  +FP++I Y+P  +A  + A+ E  IGF+
Sbjct:   328 AYASMLYLKKFKNFKIIIRGIPVEQFNIADGFRFPEIIKYKPH-TATTEQASTEIKIGFV 386

Query:   404 KEAPALSVSGFNVYHKNRLIRPFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTL 463
             KEAP L++ GFNVYHKNRLIRPFWKVT  G   G+GVVGVLEANFIEP HDKQDFERS+L
Sbjct:   387 KEAPKLAICGFNVYHKNRLIRPFWKVTMGGDSTGHGVVGVLEANFIEPAHDKQDFERSSL 446

Query:   464 FVRLESKLKQMTLEYWKAYYHLIGH---QLPASSSYNMESGGS--VLSPVGHGP---DMQ 515
             F RLE++LK++   YW ++ HL+G+   Q+PA  S  +        +S V   P   D  
Sbjct:   447 FQRLEARLKKIVYSYWYSHCHLLGYHKYQMPADKSKKIAIPDQPPTISTVNPSPLPSDKI 506

Query:   516 KQPADQ-HKLGLASNFQEDMHLDVPSVALQGK--VRHNLENGKPAVQPIIGIAEGHDNDG 572
              Q      ++ L SN      +   S  L+    +R N +  +   QP      G++ DG
Sbjct:   507 SQGGPIIREINL-SNATSSRTVAFASPHLRNSTGLRSNFQPVQLNPQPTAADT-GNNLDG 564

Query:   573 TPEGHPVTISADQICEENIQLFIKCEEHLQRETEINQLIELLEKEVTQAKLKCAKLSAYV 632
                      SA +I +EN+QLF++CEE++++E E  Q ++ LEKE+ + K KCA L+  V
Sbjct:   565 K--------SAGEIRQENLQLFMRCEEYIKKENETEQTVKSLEKELEEFKSKCAHLALLV 616

Query:   633 EARKKQKTMEQ 643
             +A+KK+  M+Q
Sbjct:   617 DAKKKE--MQQ 625
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2122264 CRT1 "compromised recognition of TCV 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011226 DMS11 "DEFECTIVE IN MERISTEM SILENCING 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163320 AT5G50780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117358 AT4G24970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179837 AT5G13130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122244 AT4G36270 "AT4G36270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D9 MORC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-1502 morc3a "MORC family CW-type zinc finger 3a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MFY1 MORC3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
pfam13589134 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyr 3e-19
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 7e-08
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 7e-05
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 1e-04
>gnl|CDD|222246 pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information 
 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 14/128 (10%)

Query: 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPA-LVFIDDGGGMDPESLRKCMSLGY 168
             AIAEL+DN++D     AT VK+    I  D     +   D+GGGM  E LR  + LG 
Sbjct: 4   EDAIAELIDNSIDA---DATNVKIS---IDPDRGEDGISIEDNGGGMSYEELRNALKLGR 57

Query: 169 STKKA---NKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQD 225
           S+K+    + T+G+ G G K +++ LG  + V S+   ES +      L    + K G+ 
Sbjct: 58  SSKEGERDSTTLGRKGIGMKLASLSLGRKLTVTSKKEGESSTLT----LDLDDIDKEGEW 113

Query: 226 DVIVPMID 233
           D+      
Sbjct: 114 DLPELTSA 121

This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 134
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 643
KOG1845775 consensus MORC family ATPases [Cell cycle control, 100.0
KOG1845 775 consensus MORC family ATPases [Cell cycle control, 99.92
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 99.69
PRK05218613 heat shock protein 90; Provisional 99.68
PRK14083601 HSP90 family protein; Provisional 99.56
PTZ00130 814 heat shock protein 90; Provisional 99.48
COG0326623 HtpG Molecular chaperone, HSP90 family [Posttransl 99.47
PRK00095617 mutL DNA mismatch repair protein; Reviewed 99.44
COG0323638 MutL DNA mismatch repair enzyme (predicted ATPase) 99.43
TIGR00585312 mutl DNA mismatch repair protein MutL. All protein 99.39
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 99.36
COG1389538 DNA topoisomerase VI, subunit B [DNA replication, 98.87
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 98.64
COG3290537 CitA Signal transduction histidine kinase regulati 98.6
KOG0019656 consensus Molecular chaperone (HSP90 family) [Post 98.59
PRK05559631 DNA topoisomerase IV subunit B; Reviewed 98.56
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 98.48
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 98.48
smart00433594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 98.39
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 98.39
KOG0020 785 consensus Endoplasmic reticulum glucose-regulated 98.35
PRK05644638 gyrB DNA gyrase subunit B; Validated 98.34
PRK04184535 DNA topoisomerase VI subunit B; Validated 98.33
TIGR01052488 top6b DNA topoisomerase VI, B subunit. This model 98.31
TIGR01055625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 98.3
PRK14867659 DNA topoisomerase VI subunit B; Provisional 98.13
TIGR01059654 gyrB DNA gyrase, B subunit. This model describes t 98.08
PRK10364457 sensor protein ZraS; Provisional 98.04
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 98.0
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 97.85
PRK11086542 sensory histidine kinase DcuS; Provisional 97.84
PRK10604433 sensor protein RstB; Provisional 97.79
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 97.75
PRK09303380 adaptive-response sensory kinase; Validated 97.74
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 97.72
PRK11360607 sensory histidine kinase AtoS; Provisional 97.68
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 97.66
PRK11006430 phoR phosphate regulon sensor protein; Provisional 97.63
PRK09470461 cpxA two-component sensor protein; Provisional 97.62
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 97.61
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 97.59
PRK09467435 envZ osmolarity sensor protein; Provisional 97.59
COG0642336 BaeS Signal transduction histidine kinase [Signal 97.58
PRK10755356 sensor protein BasS/PmrB; Provisional 97.56
COG0187635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 97.51
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 97.5
PRK11100475 sensory histidine kinase CreC; Provisional 97.49
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 97.46
PRK10549466 signal transduction histidine-protein kinase BaeS; 97.44
PRK10815485 sensor protein PhoQ; Provisional 97.4
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 97.39
PRK13837828 two-component VirA-like sensor kinase; Provisional 97.38
PLN03237 1465 DNA topoisomerase 2; Provisional 97.29
PRK15347921 two component system sensor kinase SsrA; Provision 97.13
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 97.1
PRK10490895 sensor protein KdpD; Provisional 97.1
PTZ00109 903 DNA gyrase subunit b; Provisional 97.09
TIGR01058637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 97.06
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 97.05
PRK11091779 aerobic respiration control sensor protein ArcB; P 97.05
COG4191603 Signal transduction histidine kinase regulating C4 97.04
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 97.03
PRK10618894 phosphotransfer intermediate protein in two-compon 97.02
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 96.99
PRK10547670 chemotaxis protein CheA; Provisional 96.98
PRK10337449 sensor protein QseC; Provisional 96.94
PRK09835482 sensor kinase CusS; Provisional 96.9
PRK13557540 histidine kinase; Provisional 96.88
PRK099591197 hybrid sensory histidine kinase in two-component r 96.79
PRK10841924 hybrid sensory kinase in two-component regulatory 96.66
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 96.48
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 96.44
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 96.36
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 96.14
COG0643716 CheA Chemotaxis protein histidine kinase and relat 96.09
PLN03128 1135 DNA topoisomerase 2; Provisional 95.98
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 95.88
PHA02569602 39 DNA topoisomerase II large subunit; Provisional 95.86
PRK11644495 sensory histidine kinase UhpB; Provisional 95.71
COG4585365 Signal transduction histidine kinase [Signal trans 95.69
COG3850574 NarQ Signal transduction histidine kinase, nitrate 95.4
PRK04069161 serine-protein kinase RsbW; Provisional 95.22
PRK03660146 anti-sigma F factor; Provisional 95.2
PRK13560807 hypothetical protein; Provisional 95.06
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 94.51
COG5000712 NtrY Signal transduction histidine kinase involved 94.06
COG3852363 NtrB Signal transduction histidine kinase, nitroge 93.82
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 93.79
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 93.64
COG4192673 Signal transduction histidine kinase regulating ph 93.53
COG2972456 Predicted signal transduction protein with a C-ter 92.9
COG4251750 Bacteriophytochrome (light-regulated signal transd 92.3
PRK13559361 hypothetical protein; Provisional 91.63
COG5002459 VicK Signal transduction histidine kinase [Signal 90.31
COG3851497 UhpB Signal transduction histidine kinase, glucose 90.25
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 89.47
COG3920221 Signal transduction histidine kinase [Signal trans 84.01
PF14501100 HATPase_c_5: GHKL domain 83.33
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 80.03
>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-54  Score=490.76  Aligned_cols=407  Identities=49%  Similarity=0.715  Sum_probs=359.6

Q ss_pred             CchhhhhhhcccccccCccccCCCcCcccccccccccccccccccccHHHHHHHHhccchhhhhCCCceEEEEEEEccCC
Q 006503           62 APESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQNGATFVKVDRVNIMKD  141 (643)
Q Consensus        62 ~~~~~~fw~ag~~~~~~~~~~~~~~~~l~~~~~~~~fL~sn~Tsh~~~f~AIaELIDNAiDA~~~gAt~V~I~i~~~~~~  141 (643)
                      +..||||||||+|..+.........++-.|+.+||+|||+|+|+|+|.++|++||+|||+|.+.++|+.+.|+......+
T Consensus       100 ~~~c~sfwKag~~~~a~~~~~~~~~G~~~~iivhpkflhsnatshk~a~~a~aeLldnalDEi~~~~tf~~vd~I~p~~d  179 (775)
T KOG1845|consen  100 AIYCRSFWKAGDYLLAELDVIIGKSGGTLHIIVHPKFLHSNATSHKWAKGAIAELLDNALDEITNGATFVRVDYINPVMD  179 (775)
T ss_pred             hhhhcCcccccchhcccccceeccCCceeEEEEehhhhcCCCcccccccChhhhhccccccccccccceEEeeeeccccc
Confidence            34599999999999955556666677789999999999999999999999999999999999999999988887764444


Q ss_pred             C-CCeEEEE-----ECCCCCCHHHHHHhhhcccccccC-CCCcccccccccccccccCCEEEEEee--eCCCCCcceeee
Q 006503          142 N-SPALVFI-----DDGGGMDPESLRKCMSLGYSTKKA-NKTIGQYGNGFKTSTMRLGADVIVFSR--ATHESKSTQSIG  212 (643)
Q Consensus       142 ~-~~~I~I~-----DNG~GMs~~~l~~~~~~G~S~K~~-~~~IG~fGiGlKsAs~~lg~~v~V~Sr--~~~~~~~t~svg  212 (643)
                      . ...++|.     |||+||.++.+..+|.+|++.|.. ...+|+||+|||++.|++|.++.|++|  ...+.+.++++|
T Consensus       180 ~~i~a~~v~~~~~s~~gg~~~~~~i~~~m~l~~~~k~e~~~tv~q~~~gfktst~rlGa~~i~~~R~~~~~~~kstqsig  259 (775)
T KOG1845|consen  180 IFIRALVVQLKRISDDGGGMKPEVIRKCMSLGYSSKKEANSTVGQYGNGFKTSTMRLGADAIVFSRCESRRGLKSTQSIG  259 (775)
T ss_pred             ccceeEEeeccceeccccccCHHHHHHHHHhhhhhhhhhhhhhhhhccccccchhhhccceeEeehhhhhccCCcceeEE
Confidence            4 4555665     779999999999999999999874 789999999999999999999999999  444556799999


Q ss_pred             eeeeeehhccCCCCeEeee----eeccCCCCccccccccCccccchhhhh-----hcccCCCCChHHHHHh---------
Q 006503          213 LLSYTYLRKTGQDDVIVPM----IDFDISGHWAEPIIYSSQDDWSFNLKT-----ILEWSPFASKSELLQQ---------  274 (643)
Q Consensus       213 lLS~tfl~~~~~~di~VPi----~d~d~~~~~~~~iv~~~~edw~~~l~~-----Il~ySPf~se~eL~~q---------  274 (643)
                      +|||+||+.++.+|++||+    .+++...+.+.+|+..+..+|..++.+     +++|+||.++.+++.|         
T Consensus       260 lls~tfL~~t~~~d~iv~~~~i~~~~e~~~~~~~~i~~~s~~~~~~n~~i~~~~~~L~w~p~~~~~~~l~q~~v~~~~~~  339 (775)
T KOG1845|consen  260 LLSYTFLRKTGKRDFIVPMRLIKMDYEKSDQLWQGILYKSGVDWAVNLEIEVTERFLKWSPYSHLLDLLGQNSVQYSKDF  339 (775)
T ss_pred             EEEEeeeccccCCceeEecchhhhhhhcccccccceeeccccccceeeeeHHHHHHhhcCccccHHHHhhhhhhhhcccc
Confidence            9999999999999999999    888887778888988888999999888     9999999999999988         


Q ss_pred             ------hhccCCCeeEEEEecc--ccccCCcccccCCCChhhhhhcccccccccccchhhhhhhhccchhhhhhhhhhhh
Q 006503          275 ------FEDIGPHGTKVIIYNL--WMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPKKVLERQSHISYRIRYSLRAYA  346 (643)
Q Consensus       275 ------f~~i~~~GT~IiI~nL--w~~~dg~~Eldf~~d~~DI~i~~~~~~~~~~~~~~~~~~l~~hl~~~~~~SLRaYl  346 (643)
                            |+.+..+||.||+||+  |....|..|+||+.++++|..                         .+.++++.|.
T Consensus       340 ~ef~~~~~~~~~~g~~~I~Y~~~~~~~~~g~~e~df~l~~~~i~~-------------------------~~~~~~~s~~  394 (775)
T KOG1845|consen  340 PEFGHQFNIMNKPGTDVIIYNLRRWKGDEGILELDFDLDPHVIPW-------------------------TYCHSHLSEA  394 (775)
T ss_pred             chhcchhhhccCCCceeeeechhhhcccccceeeccccCcccccc-------------------------cchhhhhhcc
Confidence                  8888899999999999  999999999999998877541                         3456788899


Q ss_pred             hhhccCCCCceEEEEcCeecccccccccccCCccccCCCCCcCCC---ccceEEEEEeeeccCC-CccCCceEEEEeCce
Q 006503          347 SMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVISYRPQVSAPL---KDATAETTIGFIKEAP-ALSVSGFNVYHKNRL  422 (643)
Q Consensus       347 SiLYL~~~~~~kI~LnG~~V~~~~i~~~L~~~e~~~YkPq~~~~v---~~~~v~itiGf~kea~-~~~~~G~~vY~~nRL  422 (643)
                      +|||+..+.+|++++.|+.+.++.+....+..+...|.|+....-   .........||.+.++ +.+..|++|||.+||
T Consensus       395 sil~~~~~~~~~~v~~~~~~~h~sv~~~q~~~~~~~~~p~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~~~l  474 (775)
T KOG1845|consen  395 SILLLTRRLRFKSVLRGKDVEHHSVINYQVQTEEILYQPQRAPADGKQRLIKLSPKPGFVKDAPRPIDVQQFNVSHGPRL  474 (775)
T ss_pred             cccchhccccchhccccccchhhhHHHHHHHHHHHhcccccccCCccchhhcccCCCCcccccCCCCCccCCccccCCcc
Confidence            999999889999999999999999999888889999999876531   1233345578877765 467789999999999


Q ss_pred             ec----ccccccCCCCccCceEEEEeecCccCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 006503          423 IR----PFWKVTGDGSLKGNGVVGVLEANFIEPTHDKQDFERSTLFVRLESKLKQMTLEYWKAYYHLIGHQLPAS  493 (643)
Q Consensus       423 I~----~~ekVg~~~~~~grGVIGVle~nflePthnKQdFe~t~~y~~l~~~L~e~l~~YW~~~~~~~g~~~~~~  493 (643)
                      |.    ++|+.|+...+.++++++++..||.+++|++|+|+.+..-...+....++++.||...|+.++|.....
T Consensus       475 ie~~~~~~~k~~n~~~s~~~~~~~il~~n~~~~a~~~~~v~~~~v~a~~es~~~~~~~~~~~~~~~~i~~~~~q~  549 (775)
T KOG1845|consen  475 IEHGCRPFVKIDNATGSLGQAVIPILVGNFVETAPDSQGVEKTIVLASSESRDKQSLNTYEEKKCLRIDEAGRQL  549 (775)
T ss_pred             hhhcccceeeecCCCccccccccceecccccccCCCccccccccccccchhhhhhcccccccccccccCccchhh
Confidence            99    999999999999999999999999999999999999999999999999999999999999999976553

>KOG1845 consensus MORC family ATPases [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query643
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 78/556 (14%), Positives = 158/556 (28%), Gaps = 180/556 (32%)

Query: 50  AAAIASSPPVNEAPESRSFWKAGTYAANITIKSTPVQGSLEHARVHPKFLHSNATSHKWA 109
           A  +  S  V    + + FW       N+   ++P +  LE      + L      +  +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFW------LNLKNCNSP-ETVLEML----QKLLYQIDPNWTS 215

Query: 110 FGAIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLR----KCMS 165
               +  +   +  +Q      ++ R+   K     L+ + +    + ++       C  
Sbjct: 216 RSDHSSNIKLRIHSIQA-----ELRRLLKSKPYENCLLVLLN--VQNAKAWNAFNLSCKI 268

Query: 166 LGYSTKKANKTIGQYGNGFKTSTMRLGADVIVFSRATHESKSTQSIGLLSYTYLRKTGQD 225
           L  +T+   K +  + +   T+ + L    +     T +    +   LL   YL    QD
Sbjct: 269 L-LTTR--FKQVTDFLSAATTTHISLDHHSMTL---TPD----EVKSLLL-KYLDCRPQD 317

Query: 226 -----DVIVPMIDFDISGHWAEPIIYSSQ-DDWSF----NLKTILEWS-----PFASKSE 270
                    P     +S          +  D+W       L TI+E S     P    +E
Sbjct: 318 LPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP----AE 370

Query: 271 LLQQFEDIG--PHGTKV---IIYNLWMNDEGVYELSFDDDEEDICLRDEANSGSLKKLPK 325
             + F+ +   P    +   ++  +W +           D   +          + KL K
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVI-------KSDVMVV----------VNKLHK 413

Query: 326 K-VLERQSH-ISYRIRYSLRAYASMLYLGKFDNFKIILRGKPIQQFHIADELKFPKVI-S 382
             ++E+Q    +  I  S+     +    K +N             H         ++  
Sbjct: 414 YSLVEKQPKESTISI-PSI----YLELKVKLEN---------EYALHR-------SIVDH 452

Query: 383 YRPQVSAPLKDATAETTIGFIKEAPALSVSGFN--VYHKNRLIRPFWKVTGDGSLKGNGV 440
           Y    +    D        +           ++   +H                LK    
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYF----------YSHIGHH----------------LKN--- 483

Query: 441 VGVLEANFIEPTHDKQDFERSTLFVR-LESKLKQMTLEYWKAYYHLIGHQLPASSSYNME 499
                   IE       F    L  R LE K++                      S    
Sbjct: 484 --------IEHPERMTLFRMVFLDFRFLEQKIRH--------------------DSTAWN 515

Query: 500 SGGSVLSPVGHGPDMQK--------QPADQHKLGLASNF----QEDM----HLDVPSVAL 543
           + GS+L+ +     ++          P  +  +    +F    +E++    + D+  +AL
Sbjct: 516 ASGSILNTLQ---QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572

Query: 544 QGKVRHNLENGKPAVQ 559
             +     E     VQ
Sbjct: 573 MAEDEAIFEEAHKQVQ 588

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 643
d1b63a2218 d.122.1.2 (A:-2-216) DNA mismatch repair protein M 0.002
>d1b63a2 d.122.1.2 (A:-2-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 218 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 19/103 (18%), Positives = 47/103 (45%), Gaps = 11/103 (10%)

Query: 112 AIAELLDNAVDEVQNGATFVKVDRVNIMKDNSPALVFIDDGGGMDPESLRKCMSLGYSTK 171
            + EL++N++D    GAT + +D   I +  +  +   D+G G+  + L   ++   ++K
Sbjct: 28  VVKELVENSLDA---GATRIDID---IERGGAKLIRIRDNGCGIKKDELALALARHATSK 81

Query: 172 KANKTIGQY-----GNGFKTSTMRLGADVIVFSRATHESKSTQ 209
            A+    +        G   +++   + + + SR   + ++ Q
Sbjct: 82  IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQEAWQ 124

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query643
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 99.59
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 99.59
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 99.57
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 99.54
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 99.48
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.29
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 98.42
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 98.4
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 98.39
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 98.3
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 98.3
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 98.29
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 98.25
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 98.15
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 98.11
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 97.8
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 97.8
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 97.54
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 97.45
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 96.89
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.59  E-value=7e-16  Score=116.80  Aligned_cols=107  Identities=22%  Similarity=0.261  Sum_probs=81.1

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHC-------------CCCEEEEEEEECCCCCCCEEEEEECC
Q ss_conf             68533111264343344334204999999873041225627-------------99069999997168998829999789
Q 006503           86 QGSLEHARVHPKFLHSNATSHKWAFGAIAELLDNAVDEVQN-------------GATFVKVDRVNIMKDNSPALVFIDDG  152 (643)
Q Consensus        86 ~~~l~~~~i~p~fLhsnsTsh~~~f~AIaELIDNAiDA~~~-------------gAt~I~I~i~~~~~~~~~~I~I~DNG  152 (643)
                      .++++.+.-+   |||+..      .+|.|||.||.||...             ....+.|.+..+.  ....|.|.|||
T Consensus        12 ~~ll~ll~~~---lYs~~~------iflRELiqNa~DA~~~~~~~~~~~~~~~~~~~~~~I~i~~d~--~~~~l~i~DnG   80 (213)
T d2iwxa1          12 TQLMSLIINT---VYSNKE------IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPKP--EQKVLEIRDSG   80 (213)
T ss_dssp             HHHHHHHHHC---CCSCTT------HHHHHHHHHHHHHHHHHHHHTTTCGGGGTTSCCCCEEEEEEG--GGTEEEEEECS
T ss_pred             HHHHHHHHHH---HCCCCH------HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCEEEEECCC
T ss_conf             9999999885---147840------778999870999999988764259300257754221223455--66525884278


Q ss_pred             CCCCHHHHHHHH-HCCCCCCC----------CCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf             999998898965-21644555----------89886521231122121359989999420899
Q 006503          153 GGMDPESLRKCM-SLGYSTKK----------ANKTIGQYGNGFKTSTMRLGADVIVFSRATHE  204 (643)
Q Consensus       153 ~GMs~e~l~~~l-~~G~S~K~----------~~~~IG~yGiGlKsAs~~lg~~v~V~Sk~~~~  204 (643)
                      .||+.+++.+.+ .+|.|.+.          ....|||||+||.+++| ++..+.|.||..++
T Consensus        81 iGMt~~~~~~~l~~ia~S~~~~~~~~~~~~~~~~~IGqFGIGfyS~Fm-vad~v~V~trs~~~  142 (213)
T d2iwxa1          81 IGMTKAELINNLGTIAKSGTKAFMEALSAGADVSMIGQFGVGFYSLFL-VADRVQVISKSNDD  142 (213)
T ss_dssp             SCCCHHHHHHHHTTCCCSTHHHHHHHHHHTCCGGGGGGGTCGGGGGGG-TEEEEEEEEECTTS
T ss_pred             CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHH-HCCCEEEEEECCCC
T ss_conf             303588998887644000106777541000013341114601100102-23613698605886
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure