Citrus Sinensis ID: 006510

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640--

MKKSKMRSEASSSSNNSNRKGETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRRVSRRMQSVVYIPRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDFASLQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYDDEMLDPESESDDDEPDTETSCQTVGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALGSYL

ccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEEcccccHHHHHHHHHHcccccccEEEcccccccccccEEEEEccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHccccccccccccccccccHHHHHHHHHHcccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccEEEEEEEccEEEEEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEEccHHHHcccccccHHHHHHHHHHHHHcHHHHHcHHHHccccc

ccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHccccccccEEEcccccccccccEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHcccHHccHHHHcccccccHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHcHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccccccccccccccccccccEEEEEcccEEEEEEEEcccccccEEEEEEcccHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccEccccccHHccccccEEEEEHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccEEEEEccccEEEHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccc

mkkskmrseassssnnsnrkgetvvgdcgtcrsscgyckssgrtsithglwaysvtvDDYQDLLDrgwrrsgsflykpdmertccpsytirlrasdfapskeqrrVSRRMQSVVyiprfldgtvDVEKKSVElikdpstsncnkvSSSVEnnslshnneennkEEEILQFLSGQIDNAVQLCIVRGqflsgiqlpkaSVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGqsiedtgpspKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKqasldedvhigtvskesaktceskggclknssehpqakRHKLQIRlkrssfdpqefELYRRYQIkvhndkpdqvtetsyrrflvdsplvfvppsgddtvppcgfgsfhqqyliddrlvaVGVIDilprclsskylfwdpdyaflsLGKYSALQEISWVkenqthcptlqyyYLGYYIHSCRKMrykaayhpsellcplryqwvpydiarplldrkpyvvLSDFaslqnesspcisenvmgcqhddigqgdsndvrmdydyddemldpesesdddepdtetscqtvgvedgdisnivirgqgtrvrYKDIQrvfgpiqrRSLESQLRKYMKVVGAELSERMVYALGSYL

mkkskmrseassssnnsnrkgetvvgdcgtcrSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRsgsflykpdmertCCPSytirlrasdfapskeqrrvsrrmqsvvyiprfldgtvdvEKKSvelikdpstsncnkvssSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVRGQFlsgiqlpkasvkKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGqsiedtgpsPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKEsaktceskggclknssehpqakrhklqirlkrssfdpqeFELYRRYQikvhndkpdqvtETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDFASLQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYDDEMLDPesesdddepdtetscqtvgvedgdisnivirgqgtrvrykdiqrvfgpiqrrslesQLRKYMKVVGAELSERMVYALGSYL

mkkskmrseassssnnsnrkGETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEqrrvsrrmqsvvYIPRFLDGTVDVEKKSVELIKDPSTsncnkvsssvennslshnneennkeeeILQFLSGQIDNAVQLCIVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDFASLQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYddemldpesesdddepdtetSCQTVGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALGSYL

***********************VVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRA****************QSVVYIPRFLDGTVDVE***************************************ILQFLSGQIDNAVQLCIVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASL***VH*********************************************EFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDFASLQ*****CI***V**********************************************VGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYAL****

*************************GDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRRVSRRMQSVVYIPRFL*****************************************************************************************************************************************************************ACNGHLNFYSAMKQA*LDEDVHIGTVSKESAK**********************LQIRLKRSSFDPQEFELYRRYQIKV************YRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVL******************************************************************VEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALGSYL

***************************CGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDF***********RMQSVVYIPRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVRGQFLSGIQLPK********AKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVS***************************LQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDFASLQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYDDEML******************TVGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALGSYL

********************GETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRRVSRRMQSVVYIPRFL******************************************KEEEILQFLSGQIDNAVQLCIVR*QFLSGIQLPKASVKKVSQ*KR****EGMENLLYTSNIAFQLAATLN*********************TGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQ************************************KRHKLQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDF******************************************************************GDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALGSYL

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		642	2.2.26 [Sep-21-2011]
Q9ZT48		632	Arginyl-tRNA--protein tra	yes	no	0.945	0.960	0.532	0.0
O95260		518	Arginyl-tRNA--protein tra	yes	no	0.278	0.345	0.494	1e-49
Q9Z2A5		516	Arginyl-tRNA--protein tra	yes	no	0.299	0.372	0.472	2e-48
Q2PFX0		518	Arginyl-tRNA--protein tra	N/A	no	0.278	0.345	0.494	8e-48
O96539		484	Arginyl-tRNA--protein tra	no	no	0.283	0.376	0.479	5e-45
Q55EI0		629	Arginyl-tRNA--protein tra	yes	no	0.077	0.079	0.593	2e-38
O14133		391	Arginyl-tRNA--protein tra	yes	no	0.305	0.501	0.350	4e-28
P16639		503	Arginyl-tRNA--protein tra	yes	no	0.261	0.333	0.335	2e-20
Q9I0M0		235	Putative arginyl-tRNA--pr	yes	no	0.208	0.570	0.364	6e-16
Q02NB0		235	Putative arginyl-tRNA--pr	yes	no	0.208	0.570	0.364	6e-16

>sp\|Q9ZT48\|ATE1_ARATH Arginyl-tRNA--protein transferase 1 OS=Arabidopsis thaliana GN=ATE1 PE=2 SV=2	Back alignment and function desciption

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/655 (53%), Positives = 454/655 (69%), Gaps = 48/655 (7%)

Query: 6   MRSEASSSSNN-SNRKGETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLL 64
           ++++ASSS +  SNR  E+V+ D G  +S+CGYCKS  R+SI+HGL A ++TV DYQ L+
Sbjct: 3   LKNDASSSHDGGSNR--ESVIDDHGRRKSTCGYCKSPARSSISHGLSAQTLTVYDYQALI 60

Query: 65  DRGWRRSGSFLYKPDMERTCCPSYTIRLRASDFAPSKEQRRVSRRMQSVVYIPRFLDGTV 124
           DRGWRRSG++LYK +M++TCCP YTIRL+ASDF P+KEQ+RVSRR++      RFLDG +
Sbjct: 61  DRGWRRSGTYLYKHEMDKTCCPPYTIRLKASDFVPTKEQQRVSRRLE------RFLDGKL 114

Query: 125 DVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIV 184
           DV+ +     +    S+   VS +      +  +EEN K E ++  LS  ID AVQLCI 
Sbjct: 115 DVQPR-----EQRGASSSGDVSDTRRKTLGAAKSEENKKVEAVMDDLSKNIDQAVQLCIR 169

Query: 185 RGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQI 244
            G+F S +Q+PKASVKKV  A+RK L EG E +LYTSNIAF +AA + R Q +EK+    
Sbjct: 170 SGEFPSNMQIPKASVKKVFCARRKKLAEGTEQILYTSNIAFPIAAAIKRIQTSEKEGIN- 228

Query: 245 RVFGQSIEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDV-H 303
                S E    SP+ I+  L S++ ++ ET  +SI+ C GH+NF S+ K +  D DV  
Sbjct: 229 -----SAEGNRLSPETISEMLLSAMHKVGETPDVSIKVCKGHINFLSSAKDSFSDRDVVP 283

Query: 304 IGTVSKESAKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSFDPQEFELYRRYQIKVHND 363
            G +S+ +     S+    K  SE+ QA++ KL+I LKRSSFDP+E ELY+RYQ+KVHND
Sbjct: 284 NGNISRGANSLDGSETLHAKKDSENHQARKRKLEIHLKRSSFDPEEHELYKRYQLKVHND 343

Query: 364 KPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRC 423
           KP  V E+SYRRFLVDSPL+ V PSGD+ VPPCGFGSFHQQY ID RL+AVGV+DILP+C
Sbjct: 344 KPGHVVESSYRRFLVDSPLIDVQPSGDEKVPPCGFGSFHQQYRIDGRLIAVGVVDILPKC 403

Query: 424 LSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAY 483
           LSS YLFWDPDYAFLSLGKYSA+QEI+WV ENQ  CP+LQYYYLGYYIHSC KMRYKAAY
Sbjct: 404 LSSVYLFWDPDYAFLSLGKYSAIQEINWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAY 463

Query: 484 HPSELLCPLRYQWVPYDIARPLLDRKPYVVLSDFASLQNESS--PCISENVM---GCQHD 538
            PSELLCPLR+QWVP+++ARP+LD+KPYV+LSD A   N+ S     SE ++     +H+
Sbjct: 464 RPSELLCPLRFQWVPFEVARPMLDKKPYVILSDIAISHNQCSLLAGASETLVEPAASEHE 523

Query: 539 DIGQGDSNDVRMD---------------YDYDDEMLDPESESDDDEPDTETSCQTVGVED 583
           D+ QG++ND  M                 D D+EM + ESE    E D        G +D
Sbjct: 524 DMEQGETNDNFMGCSDEDEDEDEDDDDDDDDDEEMYETESEDSHIESDP-------GSKD 576

Query: 584 GDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYAL 638
            DI+NI+I   G++ RYK+++++  P+ R+ LE  L+ Y KVVGAELSERMVY +
Sbjct: 577 NDINNILIGLYGSQYRYKEMRQIITPVGRKQLEPMLQSYRKVVGAELSERMVYEI 631

Involved in the post-translational conjugation of arginine to the N-terminal aspartate or glutamate of a protein. This arginylation is required for degradation of the protein via the ubiquitin pathway. Does not arginylate cysteine residues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 2EC: .EC: 8

>sp\|O95260\|ATE1_HUMAN Arginyl-tRNA--protein transferase 1 OS=Homo sapiens GN=ATE1 PE=1 SV=2	Back alignment and function description

>sp\|Q9Z2A5\|ATE1_MOUSE Arginyl-tRNA--protein transferase 1 OS=Mus musculus GN=Ate1 PE=1 SV=2	Back alignment and function description

>sp\|Q2PFX0\|ATE1_MACFA Arginyl-tRNA--protein transferase 1 OS=Macaca fascicularis GN=ATE1 PE=2 SV=1	Back alignment and function description

>sp\|O96539\|ATE1_DROME Arginyl-tRNA--protein transferase 1 OS=Drosophila melanogaster GN=Ate1 PE=2 SV=3	Back alignment and function description

>sp\|Q55EI0\|ATE1_DICDI Arginyl-tRNA--protein transferase 1 OS=Dictyostelium discoideum GN=ate1 PE=3 SV=1	Back alignment and function description

>sp\|O14133\|ATE1_SCHPO Arginyl-tRNA--protein transferase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3C7.07c PE=3 SV=3	Back alignment and function description

>sp\|P16639\|ATE1_YEAST Arginyl-tRNA--protein transferase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATE1 PE=1 SV=2	Back alignment and function description

>sp\|Q9I0M0\|ATE_PSEAE Putative arginyl-tRNA--protein transferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ate PE=3 SV=1	Back alignment and function description

>sp\|Q02NB0\|ATE_PSEAB Putative arginyl-tRNA--protein transferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ate PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		642
225448390		640	PREDICTED: arginyl-tRNA--protein transfe	0.943	0.946	0.650	0.0
255571911		629	Arginyl-tRNA--protein transferase, putat	0.937	0.957	0.652	0.0
356568461		612	PREDICTED: arginyl-tRNA--protein transfe	0.948	0.995	0.632	0.0
224112529		596	predicted protein [Populus trichocarpa]	0.884	0.953	0.634	0.0
356539953		619	PREDICTED: arginyl-tRNA--protein transfe	0.956	0.991	0.627	0.0
357461181		626	Metallocarboxypeptidase inhibitor [Medic	0.953	0.977	0.609	0.0
224098539		537	predicted protein [Populus trichocarpa]	0.827	0.988	0.650	0.0
297833912		602	hypothetical protein ARALYDRAFT_478464 [	0.920	0.981	0.537	0.0
449441312		636	PREDICTED: arginyl-tRNA--protein transfe	0.970	0.979	0.556	0.0
449526968		636	PREDICTED: arginyl-tRNA--protein transfe	0.970	0.979	0.555	0.0

>gi\|225448390\|ref\|XP_002271416.1\| PREDICTED: arginyl-tRNA--protein transferase 1-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/630 (65%), Positives = 486/630 (77%), Gaps = 24/630 (3%)

Query: 22  ETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDME 81
           E+VV D G  RS+CGYC+S  RTSI+HGLWA+S+TVDDYQDLLDRGWRRSGSFLYKP+ME
Sbjct: 23  ESVVVDVGRRRSTCGYCRSGARTSISHGLWAHSITVDDYQDLLDRGWRRSGSFLYKPEME 82

Query: 82  RTCCPSYTIRLRASDFAPSKEQRRVSRRMQSVVYIPRFLDGTVDVEKKSVELIKDPSTSN 141
           RTCCPSYTIRLRA DF PSKEQ RVS+RMQ      RF DGT+ V+K+  ++   P TS 
Sbjct: 83  RTCCPSYTIRLRADDFVPSKEQLRVSKRMQ------RFQDGTLSVKKQD-KINDGPKTSK 135

Query: 142 C------NKVSSSVENNSLSHNNEENNKEEEILQFLSGQIDNAVQLCIVRGQFLSGIQLP 195
                  ++VS S    +L+  +EE NK E  + +LS QIDNAV  C   G+FL  IQLP
Sbjct: 136 SSGSSIHHEVSGSAAKGTLAGKDEEKNKVEAFMHYLSDQIDNAVCACTESGEFLCDIQLP 195

Query: 196 KASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTG 255
           KASVK V  AKRKL VEG E+LLY+SNI+FQ+AATL RAQ AEKDV   ++   + E+  
Sbjct: 196 KASVKMVLPAKRKLQVEGSEDLLYSSNISFQIAATLRRAQSAEKDVPHSKLSRHNAEEDV 255

Query: 256 PS----PKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKES 311
            S    PK IA KLASSL  +A+ SG+ IRACNGH+NFYSA K   L E + I   +KES
Sbjct: 256 SSIAFLPKTIAEKLASSLNHMAKVSGMLIRACNGHINFYSARKGNFLSEGIQIVNGAKES 315

Query: 312 AKTCESKGGCLKNSSEHPQAKRHKLQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTET 371
                S+GGCLK SSE PQ KR KL+IRLKRSSFDP+EF LYRRYQIKVHND P+ V E+
Sbjct: 316 PTGSGSEGGCLKKSSECPQGKRRKLEIRLKRSSFDPEEFALYRRYQIKVHNDTPEHVMES 375

Query: 372 SYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFW 431
           SYRRFLVD+PLVFVPP+GDDTVPPCGFGSFHQQY+ID RLVAVGVIDILPRCLSSKYLFW
Sbjct: 376 SYRRFLVDTPLVFVPPTGDDTVPPCGFGSFHQQYVIDGRLVAVGVIDILPRCLSSKYLFW 435

Query: 432 DPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCP 491
           DPD AFLSLGKYSALQEI W+KENQ HCP+L+YYYLGYYIHSC KMRYKAAY PSELLCP
Sbjct: 436 DPDLAFLSLGKYSALQEIGWIKENQAHCPSLEYYYLGYYIHSCSKMRYKAAYRPSELLCP 495

Query: 492 LRYQWVPYDIARPLLDRKPYVVLSDFASLQN-ESSPCISENVMGCQHDDIGQGDSNDVRM 550
           LRYQWVP+DIARPLLDR+PYVVLSDFA LQN ES+P + EN+M  QH+ + + D+ND+  
Sbjct: 496 LRYQWVPFDIARPLLDRQPYVVLSDFAVLQNGESTPHVPENLMEMQHNGLNEEDANDID- 554

Query: 551 DYDYDDEMLDPESESDDDEPDTETSCQT-VGVEDGDISNIVIRGQGTRVRYKDIQRVFGP 609
               D+EM D +  + DDE D+E +  T V +EDGD+SN++I  + + VR+KD+Q  FGP
Sbjct: 555 ----DEEMDDADFVNSDDESDSEANGPTSVEIEDGDVSNVLIGLKRSCVRFKDLQHAFGP 610

Query: 610 IQRRSLESQLRKYMKVVGAELSERMVYALG 639
            +R  LE+QLR+YM+ VGAE++ RMVY+LG
Sbjct: 611 SERAYLETQLRRYMRAVGAEVAGRMVYSLG 640

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255571911\|ref\|XP_002526898.1\| Arginyl-tRNA--protein transferase, putative [Ricinus communis] gi\|223533797\|gb\|EEF35529.1\| Arginyl-tRNA--protein transferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356568461\|ref\|XP_003552429.1\| PREDICTED: arginyl-tRNA--protein transferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|224112529\|ref\|XP_002316221.1\| predicted protein [Populus trichocarpa] gi\|222865261\|gb\|EEF02392.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356539953\|ref\|XP_003538457.1\| PREDICTED: arginyl-tRNA--protein transferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357461181\|ref\|XP_003600872.1\| Metallocarboxypeptidase inhibitor [Medicago truncatula] gi\|355489920\|gb\|AES71123.1\| Metallocarboxypeptidase inhibitor [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224098539\|ref\|XP_002311211.1\| predicted protein [Populus trichocarpa] gi\|222851031\|gb\|EEE88578.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297833912\|ref\|XP_002884838.1\| hypothetical protein ARALYDRAFT_478464 [Arabidopsis lyrata subsp. lyrata] gi\|297330678\|gb\|EFH61097.1\| hypothetical protein ARALYDRAFT_478464 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|449441312\|ref\|XP_004138426.1\| PREDICTED: arginyl-tRNA--protein transferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449526968\|ref\|XP_004170485.1\| PREDICTED: arginyl-tRNA--protein transferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		642
TAIR\|locus:2166454		632	ATE1 "arginine-tRNA protein tr	0.933	0.947	0.509	2.2e-160
TAIR\|locus:2074718		605	ATE2 "arginine-tRNA protein tr	0.685	0.727	0.537	6.1e-126
UNIPROTKB\|F5GXE4		511	ATE1 "Arginyl-tRNA--protein tr	0.278	0.350	0.510	5.5e-76
UNIPROTKB\|E1BI60		518	ATE1 "Arginyl-tRNA--protein tr	0.278	0.345	0.510	1.4e-75
UNIPROTKB\|H0Y5C2		515	ATE1 "Arginyl-tRNA--protein tr	0.278	0.347	0.494	1.4e-75
UNIPROTKB\|O95260		518	ATE1 "Arginyl-tRNA--protein tr	0.278	0.345	0.494	1.4e-75
UNIPROTKB\|E1BVG9		527	ATE1 "Arginyl-tRNA--protein tr	0.278	0.339	0.510	7.9e-75
MGI\|MGI:1333870		516	Ate1 "arginyltransferase 1" [M	0.280	0.348	0.502	1e-74
UNIPROTKB\|F1SEH8		516	ATE1 "Arginyl-tRNA--protein tr	0.278	0.346	0.505	1.3e-74
UNIPROTKB\|E2RS45		522	ATE1 "Arginyl-tRNA--protein tr	0.278	0.342	0.510	2.1e-74

TAIR\|locus:2166454 ATE1 "arginine-tRNA protein transferase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1562 (554.9 bits), Expect = 2.2e-160, P = 2.2e-160
 Identities = 322/632 (50%), Positives = 416/632 (65%)

Query:    22 ETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDME 81
             E+V+ D G  +S+CGYCKS  R+SI+HGL A ++TV DYQ L+DRGWRRSG++LYK +M+
Sbjct:    18 ESVIDDHGRRKSTCGYCKSPARSSISHGLSAQTLTVYDYQALIDRGWRRSGTYLYKHEMD 77

Query:    82 RTCCPSYTIRLRASDFAPSKEXXXXXXXXXXXXYIPRFLDGTVDVEKKSVELIKDPSTXX 141
             +TCCP YTIRL+ASDF P+KE             + RFLDG +DV+ +     +      
Sbjct:    78 KTCCPPYTIRLKASDFVPTKEQQRVSRR------LERFLDGKLDVQPR-----EQRGASS 126

Query:   142 XXXXXXXXXXXXXXXXXXXXXXXXXILQFLSGQIDNAVQLCIVRGQFLSGIQLPKASVKK 201
                                      ++  LS  ID AVQLCI  G+F S +Q+PKASVKK
Sbjct:   127 SGDVSDTRRKTLGAAKSEENKKVEAVMDDLSKNIDQAVQLCIRSGEFPSNMQIPKASVKK 186

Query:   202 VSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFG-QSIEDTGPSPKI 260
             V  A+RK L EG E +LYTSNIAF +AA + R Q +EK+       G  S E    SP+ 
Sbjct:   187 VFCARRKKLAEGTEQILYTSNIAFPIAAAIKRIQTSEKE-------GINSAEGNRLSPET 239

Query:   261 IAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDV-HIGTVSKESAKTCESKG 319
             I+  L S++ ++ ET  +SI+ C GH+NF S+ K +  D DV   G +S+ +     S+ 
Sbjct:   240 ISEMLLSAMHKVGETPDVSIKVCKGHINFLSSAKDSFSDRDVVPNGNISRGANSLDGSET 299

Query:   320 GCLKNSSEHPQAKRHKLQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVD 379
                K  SE+ QA++ KL+I LKRSSFDP+E ELY+RYQ+KVHNDKP  V E+SYRRFLVD
Sbjct:   300 LHAKKDSENHQARKRKLEIHLKRSSFDPEEHELYKRYQLKVHNDKPGHVVESSYRRFLVD 359

Query:   380 SPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLS 439
             SPL+ V PSGD+ VPPCGFGSFHQQY ID RL+AVGV+DILP+CLSS YLFWDPDYAFLS
Sbjct:   360 SPLIDVQPSGDEKVPPCGFGSFHQQYRIDGRLIAVGVVDILPKCLSSVYLFWDPDYAFLS 419

Query:   440 LGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQWVPY 499
             LGKYSA+QEI+WV ENQ  CP+LQYYYLGYYIHSC KMRYKAAY PSELLCPLR+QWVP+
Sbjct:   420 LGKYSAIQEINWVIENQARCPSLQYYYLGYYIHSCSKMRYKAAYRPSELLCPLRFQWVPF 479

Query:   500 DIARPLLDRKPYVVLSDFASLQNESSPCI--SENVM---GCQHDDIGQGDSNDVRM---- 550
             ++ARP+LD+KPYV+LSD A   N+ S     SE ++     +H+D+ QG++ND  M    
Sbjct:   480 EVARPMLDKKPYVILSDIAISHNQCSLLAGASETLVEPAASEHEDMEQGETNDNFMGCSD 539

Query:   551 ---DYDYXXXXXXXXXXXXXXXXXXXXSCQT-VGVEDGDISNIVIRGQGTRVRYKDIQRV 606
                D D                       ++  G +D DI+NI+I   G++ RYK+++++
Sbjct:   540 EDEDEDEDDDDDDDDDEEMYETESEDSHIESDPGSKDNDINNILIGLYGSQYRYKEMRQI 599

Query:   607 FGPIQRRSLESQLRKYMKVVGAELSERMVYAL 638
               P+ R+ LE  L+ Y KVVGAELSERMVY +
Sbjct:   600 ITPVGRKQLEPMLQSYRKVVGAELSERMVYEI 631

GO:0004057 "arginyltransferase activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0016598 "protein arginylation" evidence=IEA;ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=IGI

GO:0050994 "regulation of lipid catabolic process" evidence=IGI

GO:0006816 "calcium ion transport" evidence=RCA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

TAIR\|locus:2074718 ATE2 "arginine-tRNA protein transferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GXE4 ATE1 "Arginyl-tRNA--protein transferase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BI60 ATE1 "Arginyl-tRNA--protein transferase 1" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|H0Y5C2 ATE1 "Arginyl-tRNA--protein transferase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|O95260 ATE1 "Arginyl-tRNA--protein transferase 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BVG9 ATE1 "Arginyl-tRNA--protein transferase 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:1333870 Ate1 "arginyltransferase 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SEH8 ATE1 "Arginyl-tRNA--protein transferase 1" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RS45 ATE1 "Arginyl-tRNA--protein transferase 1" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZT48	ATE1_ARATH	2, ., 3, ., 2, ., 8	0.5328	0.9454	0.9604	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.2	LOW CONFIDENCE prediction!
3rd Layer	2.3.2.8	0.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		642
pfam04377		128	pfam04377, ATE_C, Arginine-tRNA-protein transferas	2e-55
COG2935		253	COG2935, COG2935, Putative arginyl-tRNA:protein ar	7e-36
PRK01305		240	PRK01305, PRK01305, arginyl-tRNA-protein transfera	1e-35
pfam04376		78	pfam04376, ATE_N, Arginine-tRNA-protein transferas	8e-27
PRK01305		240	PRK01305, PRK01305, arginyl-tRNA-protein transfera	1e-10
COG2935		253	COG2935, COG2935, Putative arginyl-tRNA:protein ar	2e-08

>gnl\|CDD\|218050 pfam04377, ATE_C, Arginine-tRNA-protein transferase, C terminus	Back alignment and domain information

 Score =  184 bits (469), Expect = 2e-55
 Identities = 59/149 (39%), Positives = 74/149 (49%), Gaps = 22/149 (14%)

Query: 347 PQEFELYRRYQIKVHNDKP-DQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQY 405
            + + LY RYQ   H D          Y  FL DSPL                G+   +Y
Sbjct: 1   EEHYALYERYQRARHADGGMYPPDREQYASFLEDSPL----------------GTRFLEY 44

Query: 406 LIDDRLVAVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYY 465
            +D +L+AV V DILP  LS+ Y F+DPDY+  SLG YS L +I   KE       L Y 
Sbjct: 45  RLDGKLIAVAVTDILPDGLSAVYTFYDPDYSKRSLGTYSILWQIELAKELG-----LPYV 99

Query: 466 YLGYYIHSCRKMRYKAAYHPSELLCPLRY 494
           YLGY+I  C KM YKA + P E+L P  +
Sbjct: 100 YLGYWIKGCPKMNYKARFRPLEILDPGGW 128

This family represents the C terminal region of the enzyme arginine-tRNA-protein transferase (EC 2.3.2.8), which catalyzes the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N-end rule pathway of protein degradation by conjugating a destabilising amino acid to the amino terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N terminal cysteine is sometimes modified. Length = 128

>gnl\|CDD\|225486 COG2935, COG2935, Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>gnl\|CDD\|234939 PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	Back alignment and domain information

>gnl\|CDD\|202988 pfam04376, ATE_N, Arginine-tRNA-protein transferase, N terminus	Back alignment and domain information

>gnl\|CDD\|234939 PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	Back alignment and domain information

>gnl\|CDD\|225486 COG2935, COG2935, Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		642
KOG1193		511	consensus Arginyl-tRNA-protein transferase [Posttr	100.0
PRK01305		240	arginyl-tRNA-protein transferase; Provisional	100.0
COG2935		253	Putative arginyl-tRNA:protein arginylyltransferase	100.0
PF04377		128	ATE_C: Arginine-tRNA-protein transferase, C termin	100.0
PF04376		80	ATE_N: Arginine-tRNA-protein transferase, N termin	99.94
PF13480		142	Acetyltransf_6: Acetyltransferase (GNAT) domain	96.75
COG5653		406	Protein involved in cellulose biosynthesis (CelD)	88.83
PF00583		83	Acetyltransf_1: Acetyltransferase (GNAT) family; I	86.86
TIGR01575		131	rimI ribosomal-protein-alanine acetyltransferase.	81.95

>KOG1193 consensus Arginyl-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=8.2e-127  Score=1003.40  Aligned_cols=504  Identities=50%  Similarity=0.850  Sum_probs=416.1

Q ss_pred             CCCCcceEEeecCCCCCCCCCCCCCCCCceeeccccCCCCHHHHHHHHHhhhhccCCeeeccCCCCCCCCceeeeecCCC
Q 006510           17 SNRKGETVVGDCGTCRSSCGYCKSSGRTSITHGLWAYSVTVDDYQDLLDRGWRRSGSFLYKPDMERTCCPSYTIRLRASD   96 (642)
Q Consensus        17 ~~~~~~SiV~~~g~~~~~CgYc~~~~~~~~s~g~~a~~lt~~~Yq~LidrGwRRSG~~~YKP~~~~tCcp~ytIRl~v~~   96 (642)
                      ++.+.+|||.++|+..+.||||++ .+.+.+||||++.||+.+||.||||||||||+|+|||+|.+||||||||||++.+
T Consensus         3 ~~~g~~siv~~~gs~~s~cgyck~-~~~s~ShGm~a~~ltv~dYq~LiD~GWRRSG~YlYKp~~~~TCCp~YTIRl~~~~   81 (511)
T KOG1193|consen    3 GGGGSESIVDYLGSWKSTCGYCKS-ARESISHGMWAEHLTVNDYQRLIDRGWRRSGKYLYKPDMLKTCCPLYTIRLDPLE   81 (511)
T ss_pred             CCCCCHhHHHhcccchhccccccc-ccccccccceeeeeeHHHHHHHHhhccccccceeeccCCCCccCCCeeEeechhc
Confidence            466789999999999999999998 5799999999999999999999999999999999999999999999999999999


Q ss_pred             CCcChhHHHHHHhhcccccccccc-cCcccccchhhhhcCCCCCCCCCccCccccccccccCCccCchhHHHHHhhhhhh
Q 006510           97 FAPSKEQRRVSRRMQSVVYIPRFL-DGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEENNKEEEILQFLSGQI  175 (642)
Q Consensus        97 FkpsKsQrrvlkr~~~~~~~~kfL-~g~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~l~~~i  175 (642)
                      |+|||+||||+|||+      +|| +|+..+++. ++ +          ++++..+  ..++.+..+..++.+..|+++|
T Consensus        82 Fk~SKeqKrv~rr~~------rfL~~gk~~~~p~-e~-~----------~~~~~~~--~~a~~e~n~~~~~~~~~lSd~i  141 (511)
T KOG1193|consen   82 FKPSKEQKRVIRRMN------RFLADGKRPVKPV-ES-D----------VDGTADD--GAAKVEMNKKAEEGMKTLSDQI  141 (511)
T ss_pred             ccccHHHHHHHHHHH------HHHhcCCCCCCcc-cc-c----------ccccccc--ccchhhhcccccccccchhhHH
Confidence            999999999999999      999 788766553 22 1          1111111  1122222223467777889999


Q ss_pred             HHHHHHHhhhcccccCCcCccchhhhhhHHHHHhhhhccccccccchhHHHHHHHHHHHHHhhHHHHHHHhhcccccCCC
Q 006510          176 DNAVQLCIVRGQFLSGIQLPKASVKKVSQAKRKLLVEGMENLLYTSNIAFQLAATLNRAQLAEKDVQQIRVFGQSIEDTG  255 (642)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~p~~~~k~v~~~~~k~~~~g~~~~~~~sn~~f~i~~~~~~a~~~~k~~~q~r~~~~~~~~~~  255 (642)
                      +++++.               .+++++..++||++++|.   +|+++.++.           .            .....
T Consensus       142 ~~~vq~---------------~~v~el~sakrkkl~~g~---~~~~~~~~P-----------g------------~n~~r  180 (511)
T KOG1193|consen  142 KKAVQS---------------ESVAELFSAKRKKLAEGT---LYTSTAPEP-----------G------------SNKNR  180 (511)
T ss_pred             Hhhhhh---------------hhHHHHHhhhcccccccc---eeeeeccCC-----------C------------CCccc
Confidence            887762               456678888899998875   677776542           0            12456


Q ss_pred             CChHHHHHHHHHHHHhhhhcccccccccCCccchhhhhhhcccccccccccccccccccccccCccCCCCCCCccccCCC
Q 006510          256 PSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDEDVHIGTVSKESAKTCESKGGCLKNSSEHPQAKRHK  335 (642)
Q Consensus       256 ~~~~~~~~kl~~~~~~~~~~~~~~~~~~~g~~n~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (642)
                      ++++.+.+++...+.+.++.-.+.++.+.||+||...++.+.+.++..               +++..    .+...+|+
T Consensus       181 l~~e~~~e~~~~~~~k~~~~~~l~~~v~kgh~~~l~~~k~~~~~r~~~---------------sl~~~----~~~~~kh~  241 (511)
T KOG1193|consen  181 LSKEEISEKKLSKMCKKGEQKNLDPKVAKGHINFLSSTKDASSQRTLE---------------SLIDE----KSESNKHK  241 (511)
T ss_pred             cChHHHhhHhhhhhhhhccccccchhhhccCccccccchhhhcccchh---------------hhhcc----cccchhhh
Confidence            788899999999999999988888899999999998777766654321               11111    23335577


Q ss_pred             cEEEE---ecCCCChHHHHHHHHHHHhHcCCCCCCCCHHHHHHHhhcCCCcccCCCCCCCCCCCCCcceEEEEeeCCeEE
Q 006510          336 LQIRL---KRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLV  412 (642)
Q Consensus       336 l~v~i---~~~~~~~E~~~LY~rYq~~~H~d~~~~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLI  412 (642)
                      +++++   ..++|++|+|+||+|||+.||+|+|..+++.+|+||||+|||..+.|.|   +|.|||||||||||+|||||
T Consensus       242 l~~r~~hl~~s~F~~EsfeLYKkYQm~VH~D~p~~~~e~sfkRFLcdSPL~~e~~~g---~p~~gyGSfHqqY~lDgkLI  318 (511)
T KOG1193|consen  242 LEVRLIHLKRSEFSPESFELYKKYQMKVHNDKPESITEKSFKRFLCDSPLGNEQPGG---GPLCGYGSFHQQYRLDGKLI  318 (511)
T ss_pred             hheeeccccccccChHHHHHHHHHHHhhhcCCCCCcchhhHHHHhhcCCCccCCCCC---CCcccccchhheeeeCCeEE
Confidence            77665   4689999999999999999999999999999999999999999888776   79999999999999999999


Q ss_pred             EEEEEecCCCcccceeeeeCCCcCcCCchhHHHHHHHHHHHHhcccCCCCceeEeeEeecCCCcccccccCCCCccccCC
Q 006510          413 AVGVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHSCRKMRYKAAYHPSELLCPL  492 (642)
Q Consensus       413 AVgViDiLp~~lSSVY~fYDPdy~~lSLGt~saL~EI~~ar~l~~~~P~l~YyYLGYyI~~CpKM~YK~~f~P~elL~p~  492 (642)
                      |||||||||.|||||||||||||+|||||+|+|||||+|++++++++|+|+|||||||||+||||||||+|+|++||||+
T Consensus       319 AVgViDILP~cvSSvYlfyDPDYSflSLG~ySALREI~~vq~~~a~~s~L~YYYmGyYIHSCpKMrYKa~yrPSeLLcp~  398 (511)
T KOG1193|consen  319 AVGVIDILPKCVSSVYLFYDPDYSFLSLGKYSALREIALVQRLHAKCSNLQYYYMGYYIHSCPKMRYKAKYRPSELLCPE  398 (511)
T ss_pred             EEEEeecCCCccceEEEEECCchhhhccchhHHHHHHHHHHHHHhhCCCceEEEeeeEEecCcccccccccChHHhcCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeCCccccccCCCCceeeccccc-ccCCCCccccccccccccCCCCCCCCCCcccCCCCCcccCCCCCCCCCCCCC
Q 006510          493 RYQWVPYDIARPLLDRKPYVVLSDFAS-LQNESSPCISENVMGCQHDDIGQGDSNDVRMDYDYDDEMLDPESESDDDEPD  571 (642)
Q Consensus       493 t~~W~~l~~~~~~LD~~kY~rls~~~~-~~n~~~~~~~~~~~~~~~~~~~~~d~n~~~~~~~~d~~~~d~~~~~~~~~~~  571 (642)
                      |+.|+||+.|+++||+++|++|+++.- ..++.+++++|.+++-.                      +++.     ..| 
T Consensus       399 ty~WvP~e~~r~lLd~~~y~~~s~~~~~s~~~~s~~~sE~l~e~~----------------------~~e~-----~~~-  450 (511)
T KOG1193|consen  399 TYKWVPFEVIRPLLDKKKYTRFSEEPYLSDSQTSEGASETLKEKV----------------------IDEH-----EDM-  450 (511)
T ss_pred             cceeeehhhhhhhhccCcceecccccccCccccccCCccccchhh----------------------HHHH-----Hhh-
Confidence            999999999999999999999999752 22222233333322200                      0000     000 


Q ss_pred             ccccccccCCCCCCCCeeEEEeCCeeeechhhhhhhccchhhhHHHHHHHHHHHHhHHHHHHHHhhcc
Q 006510          572 TETSCQTVGVEDGDISNIVIRGQGTRVRYKDIQRVFGPIQRRSLESQLRKYMKVVGAELSERMVYALG  639 (642)
Q Consensus       572 ~~~~~~~~~~~~~dl~~vlvl~~~s~~~y~~~~~~~~~~~~~~~e~~v~ey~~lVG~~~a~rml~~~~  639 (642)
                             ......+|.+|+|..+++...|+++.++.++++++++|.+|.+|++|||++||+||||+++
T Consensus       451 -------~~G~~~~i~~~li~~~~~~~~~k~~~~i~~~s~~~q~e~~i~~y~klVG~E~s~rm~y~~~  511 (511)
T KOG1193|consen  451 -------LGGCTNKIPNILISLNGQSGRYKDLPQINFPSEPPQVEAMIVDYAKLVGAELSERMVYVLS  511 (511)
T ss_pred             -------cCceeccchhhhhhhcccccccccchhccCcccchhHHHHHHHHHHHHhHHhhhheeEecC
Confidence                   1123455899999999999999999999999999999999999999999999999999864

>PRK01305 arginyl-tRNA-protein transferase; Provisional	Back alignment and domain information

>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein	Back alignment and domain information

>PF04376 ATE_N: Arginine-tRNA-protein transferase, N terminus; InterPro: IPR007471 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein	Back alignment and domain information

>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain	Back alignment and domain information

>COG5653 Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2	Back alignment and domain information

>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		642
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 81/663 (12%), Positives = 191/663 (28%), Gaps = 201/663 (30%)

Query: 60  YQDLLD---RGWRRSGSFLYKPDMERTCCPSYTIRLRASDF-----APSKEQRRVSRRM- 110
           Y+D+L      +  +       DM ++        L   +      +        + R+ 
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSI-------LSKEEIDHIIMSKDAVSG--TLRLF 68

Query: 111 -------QSVVYIPRFLDGTVDVEKKSVELIKDPSTSNCNKVSSSVENNSLSHNNEEN-- 161
                  + +V   +F++   +V + + + +  P  +   + S          +   N  
Sbjct: 69  WTLLSKQEEMVQ--KFVE---EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123

Query: 162 --------NKEEEILQFLSG-QIDNAVQLCIVRGQFLSGIQLPKAS-VKKVSQAKR---- 207
                   ++ +  L+           +  ++ G   SG    K      V  + +    
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCK 179

Query: 208 ----------------KLLVEGMENLLYT--------SNIAFQLAATLNRAQLAEKDVQQ 243
                           + ++E ++ LLY         S+ +  +   ++  Q   + + +
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 244 IRVFGQS--IEDTGPSPKIIAAKLASSLIQLAETSGLSIRACNGHLNFYSAMKQASLDED 301
            + +     +     + K   A   S  I L  T    +       +F SA     +  D
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQV------TDFLSAATTTHISLD 292

Query: 302 VHIGTVSKESAKTCESKGGCLKNSSEH--PQAKR-HKLQIRL--KRSSFDPQEFELYRRY 356
            H  T++ +  K+   K   L    +    +    +  ++ +  +        ++ ++  
Sbjct: 293 HHSMTLTPDEVKSLLLK--YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350

Query: 357 QIKVHNDKPDQVTETS--------YRRFLVDSPLVFVPPSGDDT-VPPCGFGSFHQQYLI 407
                 DK   + E+S        YR+      L   P       +P             
Sbjct: 351 NC----DKLTTIIESSLNVLEPAEYRKMFDR--LSVFP---PSAHIPT------------ 389

Query: 408 DDRLVAVGVIDILPRCLSSKYLFW------DPDYAFLSLGKYSALQEISWVKENQTHCPT 461
                   ++ ++          W      D       L KYS +++    KE+      
Sbjct: 390 -------ILLSLI----------WFDVIKSDVMVVVNKLHKYSLVEK--QPKEST----- 425

Query: 462 LQYYYLGYYIHSCRKMRYKAAYHPSELLCPLRYQ----WVPYDIARPLLD---------- 507
                   Y+    K+  + A H   ++    Y     +   D+  P LD          
Sbjct: 426 --ISIPSIYLELKVKLENEYALH-RSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480

Query: 508 -------------RKPYVVLSDFASLQNE-SSPCISENVMGCQHDDIGQGDSNDVRM--D 551
                        R  ++   DF  L+ +      + N  G   + +       ++    
Sbjct: 481 LKNIEHPERMTLFRMVFL---DFRFLEQKIRHDSTAWNASGSILNTL-----QQLKFYKP 532

Query: 552 YDYDDEMLDPESESD--DDEPDTETSCQTVGVEDGDISNIVIRGQGTRVRYKDIQRVFGP 609
           Y  D++       +   D  P  E +   +  +  D+  I +  +   + +++  +    
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENL--ICSKYTDLLRIALMAEDEAI-FEEAHKQ--- 586

Query: 610 IQR 612
           +QR
Sbjct: 587 VQR 589

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		642
d1lrza3		182	Methicillin resistance protein FemA {Staphylococcu	95.28
d1ne9a2		171	Peptidyltransferase FemX {Weissella viridescens [T	91.94
d1qsma_		150	Histone acetyltransferase HPA2 {Baker's yeast (Sac	87.16
d1y7ra1		133	Hypothetical protein SA2161 {Staphylococcus aureus	85.45
d2jdca1		145	Probable acetyltransferase YitI {Bacillus lichenif	82.78
d1yx0a1		151	Hypothetical protein YsnE {Bacillus subtilis [TaxI	82.5

>d1lrza3 d.108.1.4 (A:166-244,A:310-412) Methicillin resistance protein FemA {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Acyl-CoA N-acyltransferases (Nat)
superfamily: Acyl-CoA N-acyltransferases (Nat)
family: FemXAB nonribosomal peptidyltransferases
domain: Methicillin resistance protein FemA
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.28  E-value=0.071  Score=27.40  Aligned_cols=136  Identities=9%  Similarity=0.026  Sum_probs=87.4

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEE
Q ss_conf             80999955999967999999998767199999999989999842288865699999999999976147998348949899
Q 006510          335 KLQIRLKRSSFDPQEFELYRRYQIKVHNDKPDQVTETSYRRFLVDSPLVFVPPSGDDTVPPCGFGSFHQQYLIDDRLVAV  414 (642)
Q Consensus       335 ~l~v~l~~~~~t~E~~~LY~kYq~~vH~d~~~~~s~~~f~~FL~~spl~~~~~~~~~~~~~~~~Gs~h~~YrlDgkLIAV  414 (642)
                      .++|+.....--++.++||..-. .+|+-.  ..+.+-|..++..-+-.                ......+.+|++||.
T Consensus        25 gv~i~~~~~~~l~~f~~l~~~~~-~r~g~~--~~~~~~~~~l~~~~~~~----------------~~l~~a~~~~~~ia~   85 (182)
T d1lrza3          25 GVKVRFLSEEELPIFRSFMEDTS-ESKAFA--DRDDKFYYNRLKYYKDR----------------VLVPLAYINELPISA   85 (182)
T ss_dssp             SCEEEECCGGGHHHHHHHC---------------CHHHHHHHHHHHGGG----------------EECEEEEEEEEEEEE
T ss_pred             CCEEEECCHHHHHHHHHHHHHHH-HHCCCC--CCCHHHHHHHHHHCCCC----------------EEEEEEECCCCCEEE
T ss_conf             98899837788999999999999-846899--99999999999855162----------------754546417860899


Q ss_pred             EEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC--CC------CCCCCCCCCCC
Q ss_conf             99832899531101110888676796059999999999982116999931475276467--77------64202347987
Q 006510          415 GVIDILPRCLSSKYLFWDPDYAFLSLGKYSALQEISWVKENQTHCPTLQYYYLGYYIHS--CR------KMRYKAAYHPS  486 (642)
Q Consensus       415 gViDiLp~~vSSVY~fYDPdy~~lSLGtysaL~EI~~ar~l~~~~P~l~yyYLGYyIh~--Cp------KM~YK~~f~P~  486 (642)
                      +++=+..+.+.-.|.-.+|++..++.+.+..-.-|.++++.+     +++|-||- |..  .+      =.+||..|.+.
T Consensus        86 ~l~~~~~~~~~y~~~~~~~~~~~~~~~~ll~~~~i~~a~~~G-----~~~~D~gG-~~~~~~~~~~~~Gl~~FK~~fg~~  159 (182)
T d1lrza3          86 GFFFINPFEVVYYAGGTSNAFRHFAGSYAVQWEMINYALNHG-----IDRYNFYG-VSGKFTEDAEDAGVVKFKKGYNAE  159 (182)
T ss_dssp             EEEEECSSCEEEEEEEECGGGGGGCHHHHHHHHHHHHHHHTT-----CCEEEEEE-CCSCCSTTCTTHHHHHHHHTTTCE
T ss_pred             EEEEEECHHHEEEECEECCCHHHCCCHHHHHHHHHHHHHHCC-----CCEEEECC-CCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf             987763001115301021421104844899999999998759-----71898468-678888876443199999706995


Q ss_pred             CCCCCCCCCEE
Q ss_conf             33469898335
Q 006510          487 ELLCPLRYQWV  497 (642)
Q Consensus       487 elL~p~t~~W~  497 (642)
                      .+--.  ++|.
T Consensus       160 ~v~~~--g~~~  168 (182)
T d1lrza3         160 IIEYV--GDFI  168 (182)
T ss_dssp             EEEEC--CCEE
T ss_pred             EEEEC--CEEE
T ss_conf             06342--2476

PyMOL of d1lrza3

>d1ne9a2 d.108.1.4 (A:165-335) Peptidyltransferase FemX {Weissella viridescens [TaxId: 1629]}	Back information, alignment and structure

>d1qsma_ d.108.1.1 (A:) Histone acetyltransferase HPA2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161 {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2jdca1 d.108.1.1 (A:2-146) Probable acetyltransferase YitI {Bacillus licheniformis [TaxId: 1402]}	Back information, alignment and structure

>d1yx0a1 d.108.1.1 (A:1-151) Hypothetical protein YsnE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure