Citrus Sinensis ID: 006531

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-

MSRVKRLGSEFYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVFDDDSTEHD

ccccEEEcccccccccccccccccEEEEEccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEccccccccccccccHHccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEcccccccHHHHcHHHccccccccEEEEEcccccccccHHHHHHHHHHHccccccccEEEEEcccccEEccccccccccccEEEEEccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccEEccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccccccccccccccEEEEcccccHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccEEEEccccccccccccccccccccEEcccccccccccccccccccccEEEEcccHHHHHcccccccccccccccccEEEEccEEEccccccccc

cccEEEEcHHHcccccccccccccEEEEcccHcHHHcccccccccccccccccEEEccccccccccccccccccEEEEEccccHHHcccccHHHHHHHHHccccccccccccccccccEEEEEcccccccccHHHHcccHHccEEEEcccccHHccHHHHHHHHcccccccEEEccccccHHccccccccccccccccccccccEEEEcccccHHccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccHHHccccccccEEEEEcccccccccccccccccccEEEEcccccHHcccHHccccccccccccccHccEEEccccccccccccccccccccccccccccccccEEEEEcccccHHcccHHccccccccEEEEcccccHccccccccccccccEEEccccccHccccccccccccccEEEEcccHHHHcccccccccccccEEEEccccccccccccccccccEEEEcccHcHHHHHHHcccHHcccccccEEEEcccccHHcccccHHccccHHccccccccEEEEcccccHHHccHHccccccccEEEEcccccHcccccccccccccEEEEcccHHHHHcccccccccccccccccEEEEEcEEEccccccccc

msrvkrlgsefygddspipfpcletlcFENMQEWedwiphgssqgveefpklRELHILRCSKLqgafpkhlpALQMLVIRECEELSISITSLPALCKLVSgckkvvgrsatdhlgsqnsvvcrdtsnqvflarplkpripkleeleinniknETDIWKSHNELLQDICSlkrltidscpklqsLVEEEEKDQQQQLCELSCRLEYLrlsnceglvklpqsslslcslreieickcsslvsfpevalpsklkkIRISSCDAlkslpeewmcdtnssleILYIEGCRSLTYIAAVQLPsslkklqihrcdnirtltveegiqcssgrryTSSLLEHlhiencpsltcifsknelpatleslevgnlppslkslfvwdcpklESIAErldnntsletisiyncenlkilpsGLHNLRQLRGITIQSCAnlvsfpegglpcaklttlVICHCerlealpkglhnltsLQHLAiiggefpsleedglptnlqslRIWGNMEIWKSMIERGRGFHRFSSLRELIIQgcdddmvsfpledkrlgtalplpasltslrivdfpnlerlsssivdlqnltslylydcpklkyfpekglpssllqldiyrcplmeekcrkdggQYWDLlthipfvrinfkwvfdddstehd

msrvkrlgsefygddspipFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGCKKVVGRSatdhlgsqnsvvcrdtsnqvflarplkpripkleeleiNNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSfpevalpsklkkiRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLtveegiqcssGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKwvfdddstehd

MSRVKRLGSEFYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPkleeleinnikneTDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVFDDDSTEHD

**********FYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQ************QLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVFD*******

MSRVKRLGSEFYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGC*****************VVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETD*************SLKRLTIDSCPKLQSLVEEEEK*******ELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMC*TNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEG**********SSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWK********FHRFSSLRELIIQGCDDDMVSFPL*DKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVF*D******

MSRVKRLGSEFYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLV**********LCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVFDDDSTEHD

*SRVKRLGSEFYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKLVSGCKKVVGRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVFDDDSTE**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		641	2.2.26 [Sep-21-2011]
Q9LRR5		1424	Putative disease resistan	yes	no	0.508	0.228	0.319	2e-27
Q7XA39		988	Putative disease resistan	N/A	no	0.352	0.228	0.290	2e-12
O23530		1301	Protein SUPPRESSOR OF npr	no	no	0.747	0.368	0.233	4e-10
Q7XA40		992	Putative disease resistan	N/A	no	0.291	0.188	0.317	1e-09
Q7XBQ9		970	Disease resistance protei	N/A	no	0.243	0.160	0.327	2e-09
P26337		630	Putative adenylate cyclas	N/A	no	0.400	0.407	0.243	7e-08
Q9LRR4		1054	Putative disease resistan	no	no	0.274	0.166	0.281	1e-07
P23799		630	Putative adenylate cyclas	N/A	no	0.404	0.411	0.250	2e-07
Q9FKZ0		815	Probable disease resistan	no	no	0.148	0.116	0.300	2e-06
Q9LVT1		623	Putative disease resistan	no	no	0.131	0.134	0.281	6e-06

>sp\|Q9LRR5\|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1	Back alignment and function desciption

 Score =  124 bits (311), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 190/388 (48%), Gaps = 62/388 (15%)

Query: 246  LPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIH 305
            LP  L+ + I SCD L SLPE  + ++  +L  L I  C SL        P++LK L I 
Sbjct: 1089 LPQNLQSLHIDSCDGLTSLPEN-LTESYPNLHELLIIACHSLESFPGSHPPTTLKTLYIR 1147

Query: 306  RCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHI-ENCPSLTCIFSKNELPATLESLEVGNL 364
             C   + L   E +Q +  R Y  S LE+L I  +C +L         P +L        
Sbjct: 1148 DC---KKLNFTESLQPT--RSY--SQLEYLFIGSSCSNLV------NFPLSLF------- 1187

Query: 365  PPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLR-QLRGITIQS 423
             P L+SL + DC              S +T SI+         +GL + R  L  + I+ 
Sbjct: 1188 -PKLRSLSIRDC-------------ESFKTFSIH---------AGLGDDRIALESLEIRD 1224

Query: 424  CANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIG-GEFPSLEEDGL 482
            C NL +FP+GGLP  KL+++++ +C++L+ALP+ L  LTSL  L II   E  ++   G 
Sbjct: 1225 CPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGF 1284

Query: 483  PTNLQSLRIWGNMEIWKSMIERGR-GFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALP 541
            P+NL++L I     +   +  R   G     +LR L I G ++D+ SFP E         
Sbjct: 1285 PSNLRTLCI----SLCDKLTPRIEWGLRDLENLRNLEIDGGNEDIESFPEEGL------- 1333

Query: 542  LPASLTSLRIVDFPNLERLS-SSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYR 600
            LP S+ SLRI  F NL+ L+     D + + ++ +  C KL+   ++ LP  L  L I  
Sbjct: 1334 LPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDKLQISIDEDLP-PLSCLRISS 1392

Query: 601  CPLMEEKCRKDGGQYWDLLTHIPFVRIN 628
            C L+ E   +   +++ +L +IP+V I+
Sbjct: 1393 CSLLTETFAEVETEFFKVL-NIPYVEID 1419

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q7XA39\|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1	Back alignment and function description

>sp\|O23530\|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3	Back alignment and function description

>sp\|Q7XA40\|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2	Back alignment and function description

>sp\|Q7XBQ9\|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1	Back alignment and function description

>sp\|P26337\|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1	Back alignment and function description

>sp\|Q9LRR4\|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1	Back alignment and function description

>sp\|P23799\|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1	Back alignment and function description

>sp\|Q9FKZ0\|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1	Back alignment and function description

>sp\|Q9LVT1\|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
356554923		1399	PREDICTED: putative disease resistance R	0.862	0.395	0.359	3e-85
400131587		1388	FB_MR5 [Malus x robusta]	0.870	0.402	0.374	3e-83
224132254		552	predicted protein [Populus trichocarpa]	0.800	0.929	0.397	3e-81
45826061		739	resistance protein [Quercus suber]	0.882	0.765	0.376	6e-79
225449649		1418	PREDICTED: putative disease resistance p	0.892	0.403	0.368	6e-73
296085123		1278	unnamed protein product [Vitis vinifera]	0.862	0.432	0.350	1e-72
224059584		1418	cc-nbs-lrr resistance protein [Populus t	0.884	0.399	0.346	1e-70
359495024		1390	PREDICTED: putative disease resistance p	0.862	0.397	0.367	6e-69
359495026		2204	PREDICTED: uncharacterized protein LOC10	0.837	0.243	0.366	3e-68
284026888		1424	CC-NBS-LRR protein [Quercus suber]	0.670	0.301	0.405	3e-66

>gi\|356554923\|ref\|XP_003545790.1\| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]	Back alignment and taxonomy information

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 237/659 (35%), Positives = 341/659 (51%), Gaps = 106/659 (16%)

Query: 1    MSRVKRLGSEFYGDDSPIPFPCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRC 60
            M  V  +  EF G+    PFP LE L F +M++WE+W    +++  + F  L++L I++C
Sbjct: 821  MKEVCCIDGEFCGNACLRPFPSLERLYFMDMEKWENWFLSDNNEQNDMFSSLQQLFIVKC 880

Query: 61   SKLQGAFPKHLPALQMLVIRECEELSISITSLPALCKL-VSGCKKVVGRSATDHLGSQNS 119
             KL G  P++LP+L+ ++++ECE+L ++I+SLP L KL + GCK +V   A +   S NS
Sbjct: 881  PKLLGKLPENLPSLKHVIVKECEQLLVTISSLPVLYKLEIEGCKGLVLNCANE-FNSLNS 939

Query: 120  VVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRLTIDSCP 179
            +         FL   L      +EEL+I +                  C+L    ++   
Sbjct: 940  MSVSRILEFTFLMERLVQAFKTVEELKIVS------------------CALDETVLNDLW 981

Query: 180  KLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLRE-IEICKCSSL 238
              +  +E+           LS  L  + + NC  +  +P+  +      E + IC C S+
Sbjct: 982  VNEVWLEKNPHG-------LSSILRLIEIRNCNIMKSIPKVLMVNSHFLERLYICHCDSI 1034

Query: 239  VSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTN----------------SSLEILYIE 282
            V      LP  LK + IS+C  L+ L +   C ++                S LE +YI 
Sbjct: 1035 VFVTMDQLPHSLKSLEISNCKNLRCLLDNGTCTSSSIIMHDDNVQHGSTIISHLEYVYIG 1094

Query: 283  GCRSLTYIA-AVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCP 341
             C SLT I+ + +LP S+K                                 HL I NC 
Sbjct: 1095 WCPSLTCISRSGELPESVK---------------------------------HLFIWNCS 1121

Query: 342  SLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCE 401
             L+C+  K +LP ++E LE+ +            CPKLESIA RL  NTSLE+I I+NCE
Sbjct: 1122 ELSCLSMKGQLPKSIERLEIQS------------CPKLESIANRLHRNTSLESIQIWNCE 1169

Query: 402  NLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNL 461
            NLK LP GLH L  L+ I I  C NLVSFPE GLP + L+ L I  CE+L ALP  ++NL
Sbjct: 1170 NLKSLPEGLHFLVNLKEIKIIGCPNLVSFPEEGLPASSLSELSIMSCEKLVALPNSMYNL 1229

Query: 462  TSLQHLAIIGGEFPSLE---EDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELI 518
             SL+ L I  G  PS++   E   P NL SL I  +    ++M     G ++ S LR+L 
Sbjct: 1230 DSLKELEI--GYCPSIQYFPEINFPDNLTSLWI-NDHNACEAMF--NWGLYKLSFLRDLT 1284

Query: 519  IQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSS-SIVDLQNLTSLYLYD 577
            I G +  M   PLE  +LGT   LP++LTSL +  FP+LE LSS     L +L+ L +Y+
Sbjct: 1285 IIGGNLFM---PLE--KLGTM--LPSTLTSLTVQGFPHLENLSSEGFHKLTSLSKLSIYN 1337

Query: 578  CPKLKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRINFKWVFDDD 636
            CPKL   PEKGLPSSLL+L I  CP ++E+CRKD G+ W  +  +P+V I+ K+++D D
Sbjct: 1338 CPKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKDKGRDWLKIADVPYVEIDGKFIYDSD 1396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|400131587\|emb\|CCH50986.1\| FB_MR5 [Malus x robusta]	Back alignment and taxonomy information

>gi\|224132254\|ref\|XP_002328223.1\| predicted protein [Populus trichocarpa] gi\|222837738\|gb\|EEE76103.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|45826061\|gb\|AAS77675.1\| resistance protein [Quercus suber]	Back alignment and taxonomy information

>gi\|225449649\|ref\|XP_002262753.1\| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296085123\|emb\|CBI28618.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224059584\|ref\|XP_002299919.1\| cc-nbs-lrr resistance protein [Populus trichocarpa] gi\|222847177\|gb\|EEE84724.1\| cc-nbs-lrr resistance protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359495024\|ref\|XP_002267933.2\| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495026\|ref\|XP_003634900.1\| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|284026888\|gb\|ADB66335.1\| CC-NBS-LRR protein [Quercus suber]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
TAIR\|locus:2091662		1424	AT3G14460 [Arabidopsis thalian	0.569	0.256	0.291	6.3e-31
TAIR\|locus:2163426		1187	TAO1 "target of AVRB operation	0.400	0.216	0.293	1.2e-20
TAIR\|locus:2129236		1301	SNC1 "SUPPRESSOR OF NPR1-1, CO	0.575	0.283	0.272	1.1e-15
TAIR\|locus:2094498		1981	AT3G25510 [Arabidopsis thalian	0.563	0.182	0.251	6.3e-15
TAIR\|locus:2205804		1556	AT1G27180 [Arabidopsis thalian	0.608	0.250	0.262	1.5e-14
TAIR\|locus:2130250		1304	AT4G16920 [Arabidopsis thalian	0.648	0.319	0.270	4.6e-14
TAIR\|locus:2147992		1189	AT5G11250 [Arabidopsis thalian	0.457	0.246	0.273	5.2e-14
TAIR\|locus:2151491		1123	AT5G46450 [Arabidopsis thalian	0.397	0.227	0.289	6.2e-14
TAIR\|locus:2175991		1294	AT5G17680 [Arabidopsis thalian	0.630	0.312	0.250	2.6e-13
TAIR\|locus:2170408		1139	AT5G46270 [Arabidopsis thalian	0.391	0.220	0.275	3.6e-13

TAIR\|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 302 (111.4 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
 Identities = 119/408 (29%), Positives = 204/408 (50%)

Query:   236 SSLVSFPEVALPSKLKKIRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQL 295
             SS   + +  + S +   R  S +A+K  P ++  D  + +E L +     L     ++L
Sbjct:  1040 SSSYQYHQYGIKSSVPSPR--SSEAIK--PSQYD-DDETDMEYLKVTDISHL-----MEL 1089

Query:   296 PSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLEHLHIENCP------SLTCIFSK 349
             P +L+ L I  CD + +L   E +  S    +   ++    +E+ P      +L  ++ +
Sbjct:  1090 PQNLQSLHIDSCDGLTSLP--ENLTESYPNLHELLIIACHSLESFPGSHPPTTLKTLYIR 1147

Query:   350 N--ELPATLESLEVGNLPPSLKSLFVWD-CPKLESIAERLDNNTSLETISIYNCENLKI- 405
             +  +L  T ESL+       L+ LF+   C  L +    L     L ++SI +CE+ K  
Sbjct:  1148 DCKKLNFT-ESLQPTRSYSQLEYLFIGSSCSNLVNFP--LSLFPKLRSLSIRDCESFKTF 1204

Query:   406 -LPSGLHNLR-QLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTS 463
              + +GL + R  L  + I+ C NL +FP+GGLP  KL+++++ +C++L+ALP+ L  LTS
Sbjct:  1205 SIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSMLLSNCKKLQALPEKLFGLTS 1264

Query:   464 LQHLAIIG-GEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGR-GFHRFSSLRELIIQG 521
             L  L II   E  ++   G P+NL++L I     +   +  R   G     +LR L I G
Sbjct:  1265 LLSLFIIKCPEIETIPGGGFPSNLRTLCI----SLCDKLTPRIEWGLRDLENLRNLEIDG 1320

Query:   522 CDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLS-SSIVDLQNLTSLYLYDCPK 580
              ++D+ SFP E    G    LP S+ SLRI  F NL+ L+     D + + ++ +  C K
Sbjct:  1321 GNEDIESFPEE----GL---LPKSVFSLRISRFENLKTLNRKGFHDTKAIETMEISGCDK 1373

Query:   581 LKYFPEKGLPSSLLQLDIYRCPLMEEKCRKDGGQYWDLLTHIPFVRIN 628
             L+   ++ LP  L  L I  C L+ E   +   +++ +L +IP+V I+
Sbjct:  1374 LQISIDEDLPP-LSCLRISSCSLLTETFAEVETEFFKVL-NIPYVEID 1419

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR\|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2129236 SNC1 "SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2130250 AT4G16920 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2170408 AT5G46270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		641
PLN03210		1153	PLN03210, PLN03210, Resistant to P	9e-14
PLN03210		1153	PLN03210, PLN03210, Resistant to P	3e-09
PLN03210		1153	PLN03210, PLN03210, Resistant to P	2e-08
PLN03210		1153	PLN03210, PLN03210, Resistant to P	1e-04
PRK15386		426	PRK15386, PRK15386, type III secretion protein Gog	2e-04
PRK15386		426	PRK15386, PRK15386, type III secretion protein Gog	0.001
PRK15386		426	PRK15386, PRK15386, type III secretion protein Gog	0.001

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

 Score = 74.5 bits (183), Expect = 9e-14
 Identities = 68/244 (27%), Positives = 110/244 (45%), Gaps = 34/244 (13%)

Query: 212 EGLVKL--PQSSL--------SLCSLREIEICKCSSLVSFPEVALPSKLKKIRISSCDAL 261
           E LVKL    S L        SL  LR I++    +L   P++++ + L+ +++S C +L
Sbjct: 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL 670

Query: 262 KSLPEEWMCDTNSSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCD----------NIR 311
             LP        + LE L +  C +L  +       SL +L +  C           NI 
Sbjct: 671 VELPSS--IQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

Query: 312 TLTVEEGIQCSSGRRYTSSLLEHLHIENCPSLT-CIFSKNELPATLESLE--VGNLPPSL 368
            L ++E    ++   + S+L     +EN   L  C     +L   ++ L   +  L PSL
Sbjct: 729 WLDLDE----TAIEEFPSNL----RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780

Query: 369 KSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLV 428
             LF+ D P L  +   + N   LE + I NC NL+ LP+G+ NL  L  + +  C+ L 
Sbjct: 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLR 839

Query: 429 SFPE 432
           +FP+
Sbjct: 840 TFPD 843

syringae 6; Provisional. Length = 1153

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|215633 PLN03210, PLN03210, Resistant to P	Back alignment and domain information

>gnl\|CDD\|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional	Back alignment and domain information

>gnl\|CDD\|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional	Back alignment and domain information

>gnl\|CDD\|237954 PRK15386, PRK15386, type III secretion protein GogB; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		641
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.91
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.9
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.87
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.83
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	99.54
KOG4341		483	consensus F-box protein containing LRR [General fu	99.41
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.39
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	99.34
KOG4341		483	consensus F-box protein containing LRR [General fu	99.32
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.27
KOG4237		498	consensus Extracellular matrix protein slit, conta	99.25
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.24
KOG0617		264	consensus Ras suppressor protein (contains leucine	99.17
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	99.13
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.02
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.99
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	98.9
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.61
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	98.54
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.54
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	98.51
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.43
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.43
PRK15386		426	type III secretion protein GogB; Provisional	98.43
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.37
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.31
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.31
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	98.17
PRK15386		426	type III secretion protein GogB; Provisional	98.13
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	98.1
KOG1947		482	consensus Leucine rich repeat proteins, some prote	98.06
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	97.92
KOG1947		482	consensus Leucine rich repeat proteins, some prote	97.89
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.89
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.83
PLN03150		623	hypothetical protein; Provisional	97.72
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.7
PLN03150		623	hypothetical protein; Provisional	97.69
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	97.62
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	97.6
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.48
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.35
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	97.32
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.24
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.19
KOG2982		418	consensus Uncharacterized conserved protein [Funct	97.04
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	96.95
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.67
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.23
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.06
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.04
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.0
KOG3864		221	consensus Uncharacterized conserved protein [Funct	95.78
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	95.61
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	94.93
KOG2123		388	consensus Uncharacterized conserved protein [Funct	94.72
KOG2123		388	consensus Uncharacterized conserved protein [Funct	94.71
KOG3864		221	consensus Uncharacterized conserved protein [Funct	93.95
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	93.39
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.03
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.88
PF13504		17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.9
PF00560		22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	89.62
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.05

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

Probab=100.00  E-value=9.9e-36  Score=346.97  Aligned_cols=526  Identities=15%  Similarity=0.098  Sum_probs=220.7

Q ss_pred             CCCcEEEecccccccccccCcCCCCCCCCCCccEEEeccCcchhccCCC----CCCCeeEEEEecCCCcc-ccCCChhhH
Q 006531           21 PCLETLCFENMQEWEDWIPHGSSQGVEEFPKLRELHILRCSKLQGAFPK----HLPALQMLVIRECEELS-ISITSLPAL   95 (641)
Q Consensus        21 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~lp~----~~~~L~~L~l~~~~~~~-~~~~~~~~L   95 (641)
                      .++.+|++.+.. +.....    ..+..+++|+.|++++|. +.+.+|.    .+++|++|++++|.... .....+++|
T Consensus        69 ~~v~~L~L~~~~-i~~~~~----~~~~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L  142 (968)
T PLN00113         69 SRVVSIDLSGKN-ISGKIS----SAIFRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNL  142 (968)
T ss_pred             CcEEEEEecCCC-ccccCC----hHHhCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCC
Confidence            355666665432 222111    345567777777776653 3334553    35567777776665431 223345666


Q ss_pred             HHH-HhcCccee-eecccccCCCCCceeecCCCccccccCCcCCCCCCcceEeecCcCCchhhhhcchHHhhcCCCCcEE
Q 006531           96 CKL-VSGCKKVV-GRSATDHLGSQNSVVCRDTSNQVFLARPLKPRIPKLEELEINNIKNETDIWKSHNELLQDICSLKRL  173 (641)
Q Consensus        96 ~~L-l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L  173 (641)
                      ++| +++|.... .+..+ ...+++++++.............+..+++|++|++++|.....   . +..+..+++|++|
T Consensus       143 ~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-p~~l~~l~~L~~L  217 (968)
T PLN00113        143 ETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ---I-PRELGQMKSLKWI  217 (968)
T ss_pred             CEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc---C-ChHHcCcCCccEE
Confidence            666 66665432 12111 1111122222211111111111223444444444444432211   1 1223444444444


Q ss_pred             EeccCCcccccccchhhhhhhhhhccCCCccEEEeccCcCccccccccCCCCCccEEEecCCCCCccCCC-ccCCCCccE
Q 006531          174 TIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLSNCEGLVKLPQSSLSLCSLREIEICKCSSLVSFPE-VALPSKLKK  252 (641)
Q Consensus       174 ~l~~c~~l~~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~l~~L~~L~L~~~~~l~~l~~-~~~l~~L~~  252 (641)
                      ++++|.....+|..     +..+    ++|++|++++|...+.+|..++.+++|++|++++|.....+|. +..+++|++
T Consensus       218 ~L~~n~l~~~~p~~-----l~~l----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  288 (968)
T PLN00113        218 YLGYNNLSGEIPYE-----IGGL----TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS  288 (968)
T ss_pred             ECcCCccCCcCChh-----HhcC----CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence            44443322222222     3333    4444444444444334444444444444444444432222332 334444444


Q ss_pred             EEccCCcCCccCChhhhhccCCCccEEEcccccCCcccccc-CCCCCCcEEecccCcccccccccccccccCCCcccccc
Q 006531          253 IRISSCDALKSLPEEWMCDTNSSLEILYIEGCRSLTYIAAV-QLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSL  331 (641)
Q Consensus       253 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~  331 (641)
                      |++++|.....+|..+...  ++|+.|++++|......+.. ..+++|+.|++++|.....+|  ..+.       ..++
T Consensus       289 L~Ls~n~l~~~~p~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~-------~~~~  357 (968)
T PLN00113        289 LDLSDNSLSGEIPELVIQL--QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLG-------KHNN  357 (968)
T ss_pred             EECcCCeeccCCChhHcCC--CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--hHHh-------CCCC
Confidence            4444444333333332222  44444444444322222221 333444444444443322222  1111       1223


Q ss_pred             ccccccccCCCcccccccCCCchhhhcccccCCCCCccEEEeccCCCchhhHhhhccCCCccEEEeecccCccccccccc
Q 006531          332 LEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLETISIYNCENLKILPSGLH  411 (641)
Q Consensus       332 L~~L~l~~c~~l~~~~~~~~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~l~~~~~  411 (641)
                      |+.|+++++ .+...+|     .+     ... .++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+.
T Consensus       358 L~~L~Ls~n-~l~~~~p-----~~-----~~~-~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~  425 (968)
T PLN00113        358 LTVLDLSTN-NLTGEIP-----EG-----LCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT  425 (968)
T ss_pred             CcEEECCCC-eeEeeCC-----hh-----HhC-cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh
Confidence            444444442 2221111     11     001 13455555555444444444445555555555555533334444455


Q ss_pred             CCCccceeeeccCCCccccCCCCCCCCCCcEEEeccccCCcccccccCCCCCccEEEEEcCCccCC-cC-CCCCCCcceE
Q 006531          412 NLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQHLAIIGGEFPSL-EE-DGLPTNLQSL  489 (641)
Q Consensus       412 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~~L~l~~~~l~~l-~~-~~~~~~L~~L  489 (641)
                      ++++|+.|++++|.....++.....+++|+.|++++|...+.+|..+ ..++|+.|++++|.+... +. ...+++|++|
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  504 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQL  504 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEE
Confidence            55555555555544333333333344455555555554444444332 234555555555444321 11 1334455555


Q ss_pred             EecccccchhhhcccccccccCCCccEEEEecCCCCcccccccccccCCCCCCCCCcceEeeccCCCcccccccccCCCC
Q 006531          490 RIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSSIVDLQN  569 (641)
Q Consensus       490 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~  569 (641)
                      ++++|.... .+|.   .+..+++|++|++++| .-...+|...       ..+++|+.|++++|.....+|..+..+++
T Consensus       505 ~Ls~N~l~~-~~p~---~~~~l~~L~~L~Ls~N-~l~~~~p~~~-------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  572 (968)
T PLN00113        505 KLSENKLSG-EIPD---ELSSCKKLVSLDLSHN-QLSGQIPASF-------SEMPVLSQLDLSQNQLSGEIPKNLGNVES  572 (968)
T ss_pred             ECcCCccee-eCCh---HHcCccCCCEEECCCC-cccccCChhH-------hCcccCCEEECCCCcccccCChhHhcCcc
Confidence            555543321 2222   3445555555555553 2222222222       23345555555554333345555555555


Q ss_pred             ccEEEecCCCCCcccCCCCcccccceEEecCCc
Q 006531          570 LTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRCP  602 (641)
Q Consensus       570 L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~  602 (641)
                      |+.+++++|+....+|..+....+....+.+|+
T Consensus       573 L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~  605 (968)
T PLN00113        573 LVQVNISHNHLHGSLPSTGAFLAINASAVAGNI  605 (968)
T ss_pred             cCEEeccCCcceeeCCCcchhcccChhhhcCCc
Confidence            555555555544445543333333333344443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D	Back alignment and domain information

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		641
4fcg_A		328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Back alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/280 (21%), Positives = 115/280 (41%), Gaps = 60/280 (21%) Query: 158 KSHNELLQDICSLKRLTIDSCPKLQSLVEEEEKDQQQQLCELSCRLEYLRLS--NCEGLV 215 K+ +LL+D R+ ++ L+S+ + DQ + RL +L+ + GL Sbjct: 69 KATADLLEDATQPGRVALE----LRSVPLPQFPDQ-------AFRLSHLQHXTIDAAGLX 117 Query: 216 KLPQSSLSLCSLREIEICKCSSLVSFP-EVALPSKLKKIRISSCDALKSLPEEWMCDTNS 274 +LP + L + + + + L + P +A ++L+++ I +C L LPE + T++ Sbjct: 118 ELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDA 175 Query: 275 SLE---ILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSL 331 S E ++ ++ R L + LP+S+ LQ N+++L + + G Sbjct: 176 SGEHQGLVNLQSLR-LEWTGIRSLPASIANLQ-----NLKSLKIRNSPLSALG-----PA 224 Query: 332 LEHLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTS 391 + HL P L+ L + C L + Sbjct: 225 IHHL------------------------------PKLEELDLRGCTALRNYPPIFGGRAP 254 Query: 392 LETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFP 431 L+ + + +C NL LP +H L QL + ++ C NL P Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

PyMOL of 4fcg

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		641
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	9e-18
4fcg_A		328	Uncharacterized protein; structural genomics, PSI-	1e-12
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	7e-14
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-09
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	5e-12
4eco_A		636	Uncharacterized protein; leucine-rich repeats, pro	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-11
3g06_A		622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A		454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1o6v_A		466	Internalin A; bacterial infection, extracellular r	3e-09
1o6v_A		466	Internalin A; bacterial infection, extracellular r	9e-09
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-09
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-09
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	1e-08
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	9e-07
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
2z80_A		353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-08
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
3zyj_A		440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	3e-05
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-07
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
2id5_A		477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2xwt_C		239	Thyrotropin receptor; signaling protein-immune sys	1e-05
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-06
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A		330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	3e-06
3o6n_A		390	APL1; leucine-rich repeat, protein binding; HET: N	1e-04
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-06
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3jqh_A		167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	5e-06
3oja_B		597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-06
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-06
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X		350	Follicle-stimulating hormone receptor; hormone-rec	8e-05
2z66_A		306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
3oja_A		487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	2e-05
2ft3_A		332	Biglycan; proteoglycan, dimer interface, structura	2e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	5e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	7e-05
3rgz_A		768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
3sb4_A		329	Hypothetical leucine rich repeat protein; LRR, rig	2e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	2e-04
3zyi_A		452	Leucine-rich repeat-containing protein 4; cell adh	4e-04
3a79_B		562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

 Score = 92.3 bits (230), Expect = 2e-20
 Identities = 69/341 (20%), Positives = 106/341 (31%), Gaps = 50/341 (14%)

Query: 274 SSLEILYIEGCRSLTYIAAVQLPSSLKKLQIHRCDNIRTLTVEEGIQCSSGRRYTSSLLE 333
           S  E LY +G  +L           L + Q H   +          +  S  R  +S   
Sbjct: 12  SGRENLYFQGSTALR-----PYHDVLSQWQRHYNADRN--------RWHSAWRQANSNNP 58

Query: 334 HLHIENCPSLTCIFSKNELPATLESLEVGNLPPSLKSLFVWDCPKLESIAERLDNNTSLE 393
            +      +L            LE        P   +L +     L    ++    + L+
Sbjct: 59  QIETRTGRALK------ATADLLEDATQ----PGRVALELRSV-PLPQFPDQAFRLSHLQ 107

Query: 394 TISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEA 453
            ++I     L  LP  +     L  +T+     L + P       +L  L I  C  L  
Sbjct: 108 HMTIDAA-GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTE 165

Query: 454 LPKGL---------HNLTSLQHLAIIGGEFPSL-EEDGLPTNLQSLRIWGNMEIWKSMIE 503
           LP+ L           L +LQ L +      SL        NL+SL+I  +      +  
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-----PLSA 220

Query: 504 RGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPASLTSLRIVDFPNLERLSSS 563
            G   H    L EL ++GC   + ++P             A L  L + D  NL  L   
Sbjct: 221 LGPAIHHLPKLEELDLRGCTA-LRNYPPIFGGR-------APLKRLILKDCSNLLTLPLD 272

Query: 564 IVDLQNLTSLYLYDCPKLKYFPEK-GLPSSLLQLDIYRCPL 603
           I  L  L  L L  C  L   P       +   + +     
Sbjct: 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

PyMOL of 4fcg

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350	Back alignment and structure

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306	Back alignment and structure

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452	Back alignment and structure

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		641
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	100.0
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.97
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.96
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.96
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.95
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.93
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.93
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.89
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.87
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.87
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.85
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.85
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.82
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.59
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.59
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.57
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.56
d2ifga3		156	High affinity nerve growth factor receptor, N-term	99.24
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.46
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.43
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	98.42
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.21
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=100.00  E-value=1.5e-34  Score=157.51  Aligned_cols=191  Identities=17%  Similarity=0.165  Sum_probs=101.1

Q ss_pred             HCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf             01699864798513567531342266887655144046777545699999999985798635668753510127889843
Q 006531          386 LDNNTSLETISIYNCENLKILPSGLHNLRQLRGITIQSCANLVSFPEGGLPCAKLTTLVICHCERLEALPKGLHNLTSLQ  465 (641)
Q Consensus       386 ~~~l~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~l~~L~  465 (641)
                      ...+++++.+.++++ .+..++. ...+++|++|++++| .++.++ ....+++|+.+++.+|. +..++ .+..+++|+
T Consensus       193 ~~~l~~~~~l~l~~n-~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~L~  266 (384)
T d2omza2         193 LAKLTNLESLIATNN-QISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDLANNQ-ISNLA-PLSGLTKLT  266 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSC-CCCCG-GGTTCTTCS
T ss_pred             CCCCCCCCEEECCCC-CCCCCCC-CCCCCCCCEEECCCC-CCCCCC-HHHCCCCCCHHCCCCCC-CCCCC-CCCCCCCCC
T ss_conf             022353233303577-4478786-444577878888777-778961-34325653410044674-47877-535546687


Q ss_pred             EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             79997698667767898887446794055551021001353345678964899804889863344211113788999988
Q 006531          466 HLAIIGGEFPSLEEDGLPTNLQSLRIWGNMEIWKSMIERGRGFHRFSSLRELIIQGCDDDMVSFPLEDKRLGTALPLPAS  545 (641)
Q Consensus       466 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~  545 (641)
                      +++++++.+..++....++.++.+.+..|....  +    ..+..+++++.|++++  +.++.++.-.        .+++
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~--~----~~~~~~~~l~~L~ls~--n~l~~l~~l~--------~l~~  330 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLED--I----SPISNLKNLTYLTLYF--NNISDISPVS--------SLTK  330 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC--C----GGGGGCTTCSEEECCS--SCCSCCGGGG--------GCTT
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--C----CCCCHHCCCCEEECCC--CCCCCCCCCC--------CCCC
T ss_conf             754567445787732356522223323233333--2----2100002467677778--8778984536--------6898


Q ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf             34574146777621354433788755898638999864699991144555772489
Q 006531          546 LTSLRIVDFPNLERLSSSIVDLQNLTSLYLYDCPKLKYFPEKGLPSSLLQLDIYRC  601 (641)
Q Consensus       546 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~L~~L~i~~c  601 (641)
                      |++|++++| .++.++ .+..+++|++|++++| .+..++...-+++|+.|++++|
T Consensus       331 L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         331 LQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             CCEEECCCC-CCCCCH-HHCCCCCCCEEECCCC-CCCCCHHHCCCCCCCEEECCCC
T ss_conf             898989899-899974-6708999998989799-5899800003999999639789

PyMOL of d2omza2

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure