Citrus Sinensis ID: 006538

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-

MAAAETSGKSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAEINAEPME

ccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccHHHHHHHcccccccEEEEcccccccHHHHHHHccccccEEEEcccccccHHHHHHHHcccccccEEEcccccccccccccHHHHHHHHcccccccEEEccccccHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccHHHHHHHHHccccccEEEccccccccccccccccHHHHHHHHccccccccccccccEEcccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEEcccccccHHHHHHHHccccccEEEccccccccHHHHHHHcccccccEEEcccccccHHHHHHHHHHccccccEEEccccccccHHHHHHHHcccccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccccccccccEEEccccccccHHHHHHHHccccccccEEEccccccHHHHHHHHHHcccEEEEEccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHcccccccccc

cccccccccHHHHccHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccEEEEcccccccHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEcccccccccccccHHHHHHHHHccccccEEEcccccccccccHHHHHHccccccHHHHHHcccHHHHHccccccccccHHHHHHHcHcccccHHEEEEccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHHHHHHHccccccEEEHHHcccccccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHcccccEEEEccccccccHHHHHHHHccccccEEEEcccccccHHHHHHHHHccccEEEEcccccccHHHHHHHHHcccccccEEEccccHcccHHHHHHHHccccccccEEEEccccccccHHHHHHHHHHcccccEEEccccHHccHHHHHHHHHHccccccccccccEEEEccccHHccHHHHHHHHHcccHHcEEEEccccccccHHHHHHHccccEEEEEccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHcccccccc

maaaetsgksldQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSteiikpllppnpylrslkvdcgkldDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGsvaekrgrsihISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTEllspnvephqspnqirpsilpgiQKLCLSVDYITDAMVGTISQGLVslthldlrdapliepritfdltnsglqqinqhgkLKHLSLIRSQEFLITYFRRVNDLGILLMADKCasmesiclggfcrvtdtgFKTILHSCSNLYKLRvshgtqltdlVFHDISATSLSLTHVCLRWCNLLTNHAIKslasntgikvldlrdcknlGDEALRAISSLPQLKILlldgsdisdvgVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDgtsklqlqeldlsnlphlsdngiltlatcrvpiselrvrqcpligdTSVIALASMLvdddrwygssirlldlyncggiTQLAFRWlkkpyfprlrwlgvtgsvNRDILDALArsrpflnvacrgeelgvdqwdnsdgmymhdydEVDELEQWLMegedesdndeeMANAeinaepme

maaaetsgksldqlPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKslasntgikvlDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFlnvacrgeelgvdqwdnsdGMYMHDYDEVDELEQWLMEGEDESDNDEEMANAeinaepme

*************LPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLS*************PSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWL************************

***********DQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGEDESDNDE*************

*********SLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEG**********ANAEINAEPME

*******GKSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYMHDYDEVDELEQWLMEGE********************

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iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		641	2.2.26 [Sep-21-2011]
Q9SDA8		656	F-box/LRR-repeat protein	yes	no	0.957	0.935	0.609	0.0
Q9ZWC6		607	F-box protein At-B OS=Ara	no	no	0.886	0.935	0.350	2e-77
Q9UKC9		423	F-box/LRR-repeat protein	yes	no	0.390	0.591	0.285	2e-14
A1A5X2		489	F-box/LRR-repeat protein	yes	no	0.391	0.513	0.266	2e-14
Q5R3Z8		423	F-box/LRR-repeat protein	yes	no	0.390	0.591	0.285	2e-14
Q8BH16		423	F-box/LRR-repeat protein	yes	no	0.335	0.508	0.298	1e-13
A6H779		423	F-box/LRR-repeat protein	yes	no	0.388	0.588	0.271	1e-12
Q5BJ29		491	F-box/LRR-repeat protein	no	no	0.391	0.511	0.25	2e-12
C8V4D4		585	SCF E3 ubiquitin ligase c	yes	no	0.443	0.485	0.243	2e-12
Q9CZV8		436	F-box/LRR-repeat protein	no	no	0.374	0.550	0.267	2e-11

>sp\|Q9SDA8\|FBL10_ARATH F-box/LRR-repeat protein 10 OS=Arabidopsis thaliana GN=FBL10 PE=2 SV=1	Back alignment and function desciption

 Score =  743 bits (1918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/619 (60%), Positives = 484/619 (78%), Gaps = 5/619 (0%)

Query: 9   KSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIK 68
           +SLD LPAALL TI+TKLDVAS+ S+A+TC T ++C  ++L+F  +FH+ +++LS E ++
Sbjct: 21  RSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHIFNVSLSMETVR 80

Query: 69  PLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRS 128
           PLL PN  L SLK+DCG+L +SAI++++RP+L E+ LHNC DFSG L+SEIG KCKDLR 
Sbjct: 81  PLLFPNQQLSSLKLDCGRLGNSAIDILVRPSLREISLHNCRDFSGDLISEIGRKCKDLRL 140

Query: 129 LYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSL 188
           L LGSVAEK GRSI    LE+LLNGC  LE L LMFD+SL+LR    R++ L S++LT L
Sbjct: 141 LCLGSVAEKVGRSISRCALEDLLNGCSHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHL 200

Query: 189 EIGYISSVMVTELLSPNVEPHQSPNQIRPS-ILPGIQKLCLSVDYITDAMVGTISQGLVS 247
           E+G+I+S M+T+LL+      Q  N++  S +L  +Q+L LSVD ITDA+V  IS+ L S
Sbjct: 201 ELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQNVQRLRLSVDCITDAVVKAISKSLPS 260

Query: 248 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILL 307
           L  LD+RDAPL +PR   DLT+ GL +INQ+GKLKHLSLIRSQEF  TYFRRV+D G+L 
Sbjct: 261 LIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKLKHLSLIRSQEFHPTYFRRVSDQGMLF 320

Query: 308 MADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSL 367
           +ADKC  ME+ICLGGFCRVTD GFKTILHSC++L K  + HG +LTDLVFHDI AT+LSL
Sbjct: 321 LADKCLGMETICLGGFCRVTDAGFKTILHSCASLSKFSIYHGPKLTDLVFHDILATTLSL 380

Query: 368 THVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 427
           +HV LR C+LLT+HAI+ LAS+  ++ LDLR C+NL DE L A+S LP+LK+LLLDG+DI
Sbjct: 381 SHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCRNLRDETLTAVSHLPKLKVLLLDGADI 440

Query: 428 SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGI 487
           SD G+SYL+  V+ SLV LS+RGC+ LTDK +S LFDG+SKL L+ELDLSNLP+L+D  I
Sbjct: 441 SDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAI 500

Query: 488 LTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 547
             LA    PI++L++R+C LIGD SV+ALAS  V +D   GSS+ LLDLY+CGGITQL+F
Sbjct: 501 FALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGGITQLSF 560

Query: 548 RWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELG---VDQWDNSDGMYM 604
           +WLKKP+FPRL+WLG+TGSVNRDI+DALAR RP L V+CRGEELG    D WD++D ++ 
Sbjct: 561 KWLKKPFFPRLKWLGITGSVNRDIVDALARRRPHLQVSCRGEELGNDGEDDWDSAD-IHQ 619

Query: 605 HDYDEVDELEQWLMEGEDE 623
           H   + DELEQW++  E +
Sbjct: 620 HIEAQEDELEQWILGDEGD 638

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ZWC6\|ATB_ARATH F-box protein At-B OS=Arabidopsis thaliana GN=ATB PE=2 SV=1	Back alignment and function description

>sp\|Q9UKC9\|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3	Back alignment and function description

>sp\|A1A5X2\|FBXL7_DANRE F-box/LRR-repeat protein 7 OS=Danio rerio GN=fbxl7 PE=2 SV=1	Back alignment and function description

>sp\|Q5R3Z8\|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH16\|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1	Back alignment and function description

>sp\|A6H779\|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1	Back alignment and function description

>sp\|Q5BJ29\|FBXL7_MOUSE F-box/LRR-repeat protein 7 OS=Mus musculus GN=Fbxl7 PE=1 SV=1	Back alignment and function description

>sp\|C8V4D4\|GRRA_EMENI SCF E3 ubiquitin ligase complex F-box protein grrA OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=grrA PE=2 SV=1	Back alignment and function description

>sp\|Q9CZV8\|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
255577864		643	ubiquitin-protein ligase, putative [Rici	0.984	0.981	0.805	0.0
224080674		643	predicted protein [Populus trichocarpa]	0.932	0.930	0.808	0.0
357444831		643	F-box/LRR-repeat protein [Medicago trunc	0.982	0.979	0.768	0.0
359474824		719	PREDICTED: F-box/LRR-repeat protein 10-l	0.962	0.858	0.770	0.0
224103131		644	f-box family protein [Populus trichocarp	0.945	0.940	0.802	0.0
356575440		637	PREDICTED: F-box/LRR-repeat protein 10-l	0.989	0.995	0.758	0.0
359474995		640	PREDICTED: F-box/LRR-repeat protein 10-l	0.962	0.964	0.765	0.0
449454247		637	PREDICTED: F-box/LRR-repeat protein 10-l	0.964	0.970	0.723	0.0
449508806		637	PREDICTED: LOW QUALITY PROTEIN: F-box/LR	0.964	0.970	0.721	0.0
297836418		654	F-box family protein [Arabidopsis lyrata	0.957	0.938	0.605	0.0

>gi\|255577864\|ref\|XP_002529805.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223530716\|gb\|EEF32587.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1011 bits (2615), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/632 (80%), Positives = 571/632 (90%), Gaps = 1/632 (0%)

Query: 5   ETSGKSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALST 64
           E   +SLDQLPAAL+ T++TKLDVASI S A+TC TF ACA  IL+F+ +F L DIAL  
Sbjct: 10  EKVSESLDQLPAALIATVMTKLDVASICSFASTCKTFSACACHILTFIPNFQLSDIALPN 69

Query: 65  EIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCK 124
           E+++PLLPPNPYL SLK+DCG+LDDSAI+L++RP+L ELCL NCADFSGKLLSEIG KC 
Sbjct: 70  ELLRPLLPPNPYLNSLKIDCGRLDDSAIDLLIRPSLQELCLLNCADFSGKLLSEIGSKCG 129

Query: 125 DLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEK 184
           +LR LY+GSVAEKRGR IHISDLEELL GC QLEAL LMFD+SLFLRHNF RVWALASEK
Sbjct: 130 NLRYLYVGSVAEKRGRPIHISDLEELLTGCTQLEALTLMFDVSLFLRHNFTRVWALASEK 189

Query: 185 LTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQKLCLSVDYITDAMVGTISQG 244
           LTSLEIGYISSVMVTELL+P+V PHQS N IRPSILPGIQKL LSVDYITD MVGTIS+G
Sbjct: 190 LTSLEIGYISSVMVTELLTPSVGPHQSLNHIRPSILPGIQKLSLSVDYITDTMVGTISKG 249

Query: 245 LVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLG 304
           L+ LTHLDLRD PLIEPRITFDLTNSGLQQINQ+GKL+HLSL RSQEF+ITYFRRVNDLG
Sbjct: 250 LMFLTHLDLRDTPLIEPRITFDLTNSGLQQINQYGKLRHLSLFRSQEFVITYFRRVNDLG 309

Query: 305 ILLMADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATS 364
           ILLMAD CASMESICLGGFC+VTDTGFKTILHSCS+L++LRVS G  LTDLVFHD+SATS
Sbjct: 310 ILLMADNCASMESICLGGFCQVTDTGFKTILHSCSSLHRLRVSRGIHLTDLVFHDMSATS 369

Query: 365 LSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDG 424
           L L+HVCLRWCNLLTN+AIK+L +NT +KVLDLRDCKNLGDE+LRAIS+L +LKILLLDG
Sbjct: 370 LCLSHVCLRWCNLLTNYAIKNLVANTHLKVLDLRDCKNLGDESLRAISTLFELKILLLDG 429

Query: 425 SDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSD 484
           S ISD G+S LR  VI+SLV LS+RGCKRLTDKCISALF+G SKL+LQELD+SNLP+LSD
Sbjct: 430 SGISDSGLSNLRGRVISSLVSLSVRGCKRLTDKCISALFEGASKLELQELDISNLPNLSD 489

Query: 485 NGILTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQ 544
           NGIL LA  R+PIS LR+RQCPLIGDTSV+ALASM VD+DR +GSS+RLLD+YNCGGITQ
Sbjct: 490 NGILCLAKSRLPISALRMRQCPLIGDTSVMALASMQVDEDRGHGSSLRLLDIYNCGGITQ 549

Query: 545 LAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELGVDQWDNSDGMYM 604
           LAFRWLKKPYFPRLRWLGVTGSVNRDI+DALAR+RPFL+VAC  EELG+DQWDNSD +YM
Sbjct: 550 LAFRWLKKPYFPRLRWLGVTGSVNRDIIDALARNRPFLHVACHAEELGIDQWDNSDSLYM 609

Query: 605 HDYDEVDELEQWLMEGEDESDNDEEMANAEIN 636
           HDYDEVDELEQWL+EGE E +NDEEM +AEIN
Sbjct: 610 HDYDEVDELEQWLLEGEFE-NNDEEMVDAEIN 640

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224080674\|ref\|XP_002306206.1\| predicted protein [Populus trichocarpa] gi\|222849170\|gb\|EEE86717.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|357444831\|ref\|XP_003592693.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|358345302\|ref\|XP_003636720.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355481741\|gb\|AES62944.1\| F-box/LRR-repeat protein [Medicago truncatula] gi\|355502655\|gb\|AES83858.1\| F-box/LRR-repeat protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|359474824\|ref\|XP_003631537.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224103131\|ref\|XP_002312937.1\| f-box family protein [Populus trichocarpa] gi\|222849345\|gb\|EEE86892.1\| f-box family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356575440\|ref\|XP_003555849.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Glycine max]	Back alignment and taxonomy information

>gi\|359474995\|ref\|XP_003631565.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449454247\|ref\|XP_004144867.1\| PREDICTED: F-box/LRR-repeat protein 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449508806\|ref\|XP_004163416.1\| PREDICTED: LOW QUALITY PROTEIN: F-box/LRR-repeat protein 10-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297836418\|ref\|XP_002886091.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi\|297331931\|gb\|EFH62350.1\| F-box family protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
TAIR\|locus:2827644		656	AT2G17020 "AT2G17020" [Arabido	0.975	0.952	0.605	7.6e-199
TAIR\|locus:2020477		607	AT1G55590 [Arabidopsis thalian	0.904	0.955	0.350	7.9e-78
RGD\|1562243		422	Fbxl2 "F-box and leucine-rich	0.333	0.507	0.315	1.2e-16
MGI\|MGI:1919429		423	Fbxl2 "F-box and leucine-rich	0.333	0.505	0.310	1.6e-16
UNIPROTKB\|Q9UKC9		423	FBXL2 "F-box/LRR-repeat protei	0.333	0.505	0.315	1.6e-16
UNIPROTKB\|Q5R3Z8		423	FBXL2 "F-box/LRR-repeat protei	0.333	0.505	0.315	1.6e-16
UNIPROTKB\|F1PWK1		422	FBXL2 "Uncharacterized protein	0.333	0.507	0.310	2.6e-16
UNIPROTKB\|F1NHD2		423	FBXL2 "Uncharacterized protein	0.333	0.505	0.301	2.6e-16
ASPGD\|ASPL0000017608		585	grrA [Emericella nidulans (tax	0.592	0.649	0.246	3.8e-15
UNIPROTKB\|A6H779		423	FBXL2 "F-box/LRR-repeat protei	0.333	0.505	0.297	1.3e-14

TAIR\|locus:2827644 AT2G17020 "AT2G17020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1925 (682.7 bits), Expect = 7.6e-199, P = 7.6e-199
 Identities = 385/636 (60%), Positives = 492/636 (77%)

Query:     9 KSLDQLPAALLCTIITKLDVASISSVAATCSTFRACAAQILSFLTSFHLLDIALSTEIIK 68
             +SLD LPAALL TI+TKLDVAS+ S+A+TC T ++C  ++L+F  +FH+ +++LS E ++
Sbjct:    21 RSLDLLPAALLETIMTKLDVASLCSLASTCKTLKSCVTRVLTFTPNFHIFNVSLSMETVR 80

Query:    69 PLLPPNPYLRSLKVDCGKLDDSAIELMLRPTLHELCLHNCADFSGKLLSEIGGKCKDLRS 128
             PLL PN  L SLK+DCG+L +SAI++++RP+L E+ LHNC DFSG L+SEIG KCKDLR 
Sbjct:    81 PLLFPNQQLSSLKLDCGRLGNSAIDILVRPSLREISLHNCRDFSGDLISEIGRKCKDLRL 140

Query:   129 LYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARVWALASEKLTSL 188
             L LGSVAEK GRSI    LE+LLNGC  LE L LMFD+SL+LR    R++ L S++LT L
Sbjct:   141 LCLGSVAEKVGRSISRCALEDLLNGCSHLEVLALMFDLSLYLRPGDGRIFGLVSDRLTHL 200

Query:   189 EIGYISSVMVTELLSPNVEPHQSPNQIRPS-ILPGIQKLCLSVDYITDAMVGTISQGLVS 247
             E+G+I+S M+T+LL+      Q  N++  S +L  +Q+L LSVD ITDA+V  IS+ L S
Sbjct:   201 ELGHITSRMMTQLLTSTEISGQDSNRVTTSTVLQNVQRLRLSVDCITDAVVKAISKSLPS 260

Query:   248 LTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVNDLGILL 307
             L  LD+RDAPL +PR   DLT+ GL +INQ+GKLKHLSLIRSQEF  TYFRRV+D G+L 
Sbjct:   261 LIDLDIRDAPLEDPRQVSDLTDFGLHEINQNGKLKHLSLIRSQEFHPTYFRRVSDQGMLF 320

Query:   308 MADKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSL 367
             +ADKC  ME+ICLGGFCRVTD GFKTILHSC++L K  + HG +LTDLVFHDI AT+LSL
Sbjct:   321 LADKCLGMETICLGGFCRVTDAGFKTILHSCASLSKFSIYHGPKLTDLVFHDILATTLSL 380

Query:   368 THVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDI 427
             +HV LR C+LLT+HAI+ LAS+  ++ LDLR C+NL DE L A+S LP+LK+LLLDG+DI
Sbjct:   381 SHVSLRRCHLLTDHAIQKLASSLKLENLDLRGCRNLRDETLTAVSHLPKLKVLLLDGADI 440

Query:   428 SDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLPHLSDNGI 487
             SD G+SYL+  V+ SLV LS+RGC+ LTDK +S LFDG+SKL L+ELDLSNLP+L+D  I
Sbjct:   441 SDTGLSYLKEGVLDSLVSLSVRGCRNLTDKFMSTLFDGSSKLALRELDLSNLPNLTDAAI 500

Query:   488 LTLATCRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQLAF 547
               LA    PI++L++R+C LIGD SV+ALAS  V +D   GSS+ LLDLY+CGGITQL+F
Sbjct:   501 FALAKSGAPITKLQLRECRLIGDASVMALASTRVYEDECPGSSLCLLDLYDCGGITQLSF 560

Query:   548 RWLKKPYFPRLRWLGVTGSVNRDILDALARSRPFLNVACRGEELG---VDQWDNSDGMYM 604
             +WLKKP+FPRL+WLG+TGSVNRDI+DALAR RP L V+CRGEELG    D WD++D ++ 
Sbjct:   561 KWLKKPFFPRLKWLGITGSVNRDIVDALARRRPHLQVSCRGEELGNDGEDDWDSAD-IHQ 619

Query:   605 HDYDEVDELEQWLM--EG----EDESDNDEEMANAE 634
             H   + DELEQW++  EG    ED  D  EE A+ E
Sbjct:   620 HIEAQEDELEQWILGDEGDVEMEDAEDESEEDASEE 655

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006486 "protein glycosylation" evidence=RCA

TAIR\|locus:2020477 AT1G55590 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000017608 grrA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SDA8	FBL10_ARATH	No assigned EC number	0.6090	0.9578	0.9359	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		641
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	2e-10
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	3e-04
cd09293		226	cd09293, AMN1, Antagonist of mitotic exit network	0.002
cd00116		319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.004

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)

Query: 366 SLTHVCLRWCNLLTNHAIKSLASN-TGIKVLDL---RDCKNLGDEALRAISSL-PQLKIL 420
           +L  + LR C  +T+  I +LA+N   ++ ++L   R+   + D +L A+      L+ +
Sbjct: 79  NLQVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTV 138

Query: 421 LLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQLQELDLSNLP 480
              G D++D GV  L      SL +LSL  C+ LTD+ I A+        L  L+    P
Sbjct: 139 GFAGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCP 198

Query: 481 HLSD 484
            ++D
Sbjct: 199 LITD 202

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1	Back alignment and domain information

>gnl\|CDD\|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		641
KOG4341		483	consensus F-box protein containing LRR [General fu	99.97
KOG4341		483	consensus F-box protein containing LRR [General fu	99.94
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.91
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.89
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.89
KOG4194		873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.83
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
KOG2120		419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.72
cd00116		319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.69
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.67
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.66
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.64
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.6
PLN03210		1153	Resistant to P. syringae 6; Provisional	99.58
KOG1909		382	consensus Ran GTPase-activating protein [RNA proce	99.56
KOG0444		1255	consensus Cytoskeletal regulator Flightless-I (con	99.55
KOG0618		1081	consensus Serine/threonine phosphatase 2C containi	99.52
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.48
KOG1947		482	consensus Leucine rich repeat proteins, some prote	99.43
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.21
COG5238		388	RNA1 Ran GTPase-activating protein (RanGAP) involv	99.2
KOG0472		565	consensus Leucine-rich repeat protein [Function un	99.18
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
KOG3207		505	consensus Beta-tubulin folding cofactor E [Posttra	99.04
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.95
PRK15387		788	E3 ubiquitin-protein ligase SspH2; Provisional	98.91
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.89
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.83
PF12937		47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.81
KOG0472		565	consensus Leucine-rich repeat protein [Function un	98.78
KOG3665		699	consensus ZYG-1-like serine/threonine protein kina	98.73
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.73
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.64
PRK15370		754	E3 ubiquitin-protein ligase SlrP; Provisional	98.59
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.49
KOG1259		490	consensus Nischarin, modulator of integrin alpha5	98.37
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.37
KOG4237		498	consensus Extracellular matrix protein slit, conta	98.34
KOG3864		221	consensus Uncharacterized conserved protein [Funct	98.34
PF14580		175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.32
PF00646		48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.24
KOG2982		418	consensus Uncharacterized conserved protein [Funct	98.24
smart00256		41	FBOX A Receptor for Ubiquitination Targets.	98.09
KOG3864		221	consensus Uncharacterized conserved protein [Funct	97.99
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.84
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.81
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.66
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.64
KOG4658		889	consensus Apoptotic ATPase [Signal transduction me	97.63
PF13855		61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.6
KOG0617		264	consensus Ras suppressor protein (contains leucine	97.58
KOG4308		478	consensus LRR-containing protein [Function unknown	97.51
KOG4308		478	consensus LRR-containing protein [Function unknown	97.43
KOG1859		1096	consensus Leucine-rich repeat proteins [General fu	97.35
PRK15386		426	type III secretion protein GogB; Provisional	97.17
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.97
PLN03150		623	hypothetical protein; Provisional	96.85
PLN03150		623	hypothetical protein; Provisional	96.79
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.73
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.59
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.51
PRK15386		426	type III secretion protein GogB; Provisional	96.46
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.45
KOG2123		388	consensus Uncharacterized conserved protein [Funct	96.38
smart00367		26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.32
COG4886		394	Leucine-rich repeat (LRR) protein [Function unknow	96.28
KOG2739		260	consensus Leucine-rich acidic nuclear protein [Cel	96.26
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	96.21
KOG1644		233	consensus U2-associated snRNP A' protein [RNA proc	95.72
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	95.51
PF12799		44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.13
PLN03215		373	ascorbic acid mannose pathway regulator 1; Provisi	95.02
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.89
PF13516		24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.76
KOG4579		177	consensus Leucine-rich repeat (LRR) protein associ	93.51
KOG2997		366	consensus F-box protein FBX9 [General function pre	93.45
KOG0532		722	consensus Leucine-rich repeat (LRR) protein, conta	92.93
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.62
KOG0281		499	consensus Beta-TrCP (transducin repeats containing	92.59
KOG0531		414	consensus Protein phosphatase 1, regulatory subuni	92.27
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	90.5
smart00368		28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	88.93
KOG3763		585	consensus mRNA export factor TAP/MEX67 [RNA proces	84.19
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	84.09
PF13013		109	F-box-like_2: F-box-like domain	81.85
PF13306		129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	81.5

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

Probab=99.97  E-value=3.3e-31  Score=247.15  Aligned_cols=219  Identities=24%  Similarity=0.420  Sum_probs=124.5

Q ss_pred             HhCCCccEEEecCCCCCCHHHHHHHHHhCCCccEEEecCCCCCCHHHHHHHHhcCCCCCEEEcccCCCCCHHHHHHhh-c
Q 006538          310 DKCASMESICLGGFCRVTDTGFKTILHSCSNLYKLRVSHGTQLTDLVFHDISATSLSLTHVCLRWCNLLTNHAIKSLA-S  388 (641)
Q Consensus       310 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~  388 (641)
                      +++..++.+.+.||.....+.+..+...++-+.++++.+|..+++.....+...+..|+.|..++|..+++..+..++ +
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~  318 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH  318 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC
Confidence            334444444444444444444444444444444444444444444444444444445555555555444444444444 4


Q ss_pred             CCCCCEEecCCCCCCChhhhHhhhCCCCCcEEEccCCcCChHHHHHHHHhcCCCccEEecCCCCCCCHHHHHHHhccCCC
Q 006538          389 NTGIKVLDLRDCKNLGDEALRAISSLPQLKILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSK  468 (641)
Q Consensus       389 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~~L~~L~l~~c~~l~~~~~~~l~~~~~~  468 (641)
                      +++|+.|.+++|..+                        ++.++..+.. .++.|+.+++.+|..+++..+..++.+|  
T Consensus       319 ~~~L~~l~l~~c~~f------------------------sd~~ft~l~r-n~~~Le~l~~e~~~~~~d~tL~sls~~C--  371 (483)
T KOG4341|consen  319 CHNLQVLELSGCQQF------------------------SDRGFTMLGR-NCPHLERLDLEECGLITDGTLASLSRNC--  371 (483)
T ss_pred             CCceEEEeccccchh------------------------hhhhhhhhhc-CChhhhhhcccccceehhhhHhhhccCC--
Confidence            444444444444433                        3334444444 5666666666666666666666666666  


Q ss_pred             CCccEEecCCCCCCCHHHHHHHHh---cCCCCCEEeccCCCCCCHHHHHHHHhccccCcccCCCCccEEeccCCCCCCHH
Q 006538          469 LQLQELDLSNLPHLSDNGILTLAT---CRVPISELRVRQCPLIGDTSVIALASMLVDDDRWYGSSIRLLDLYNCGGITQL  545 (641)
Q Consensus       469 ~~L~~L~l~~~~~l~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~  545 (641)
                      +.|+.+.++.|..++|.++..+..   +...|+.+.+.+|+.+++..++.+.         .|++|+.+++.+|..++..
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~---------~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS---------ICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh---------hCcccceeeeechhhhhhh
Confidence            667777777766666666655432   3456777777777777777777666         6677777777777777777


Q ss_pred             HHHHhhCCCCCCceEEEecC
Q 006538          546 AFRWLKKPYFPRLRWLGVTG  565 (641)
Q Consensus       546 ~~~~l~~~~~~~L~~L~l~~  565 (641)
                      ++..+.. .+|++++..+..
T Consensus       443 ~i~~~~~-~lp~i~v~a~~a  461 (483)
T KOG4341|consen  443 AISRFAT-HLPNIKVHAYFA  461 (483)
T ss_pred             hhHHHHh-hCccceehhhcc
Confidence            7766665 566666665544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>PLN03210 Resistant to P	Back alignment and domain information

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]	Back alignment and domain information

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]	Back alignment and domain information

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B	Back alignment and domain information

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]	Back alignment and domain information

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A	Back alignment and domain information

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]	Back alignment and domain information

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00256 FBOX A Receptor for Ubiquitination Targets	Back alignment and domain information

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]	Back alignment and domain information

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A	Back alignment and domain information

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG4308 consensus LRR-containing protein [Function unknown]	Back alignment and domain information

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PLN03150 hypothetical protein; Provisional	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>PRK15386 type III secretion protein GogB; Provisional	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily	Back alignment and domain information

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]	Back alignment and domain information

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B	Back alignment and domain information

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A	Back alignment and domain information

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]	Back alignment and domain information

>KOG2997 consensus F-box protein FBX9 [General function prediction only]	Back alignment and domain information

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]	Back alignment and domain information

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type	Back alignment and domain information

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

>PF13013 F-box-like_2: F-box-like domain	Back alignment and domain information

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		641
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	2e-40
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	1e-26
3ogk_B		592	Coronatine-insensitive protein 1; leucine rich rep	3e-25
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	5e-40
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	3e-26
2p1m_B		594	Transport inhibitor response 1 protein; F-BOX, leu	1e-19
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-25
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	2e-23
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	4e-14
2ast_B		336	S-phase kinase-associated protein 2; SCF-substrate	7e-13
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-17
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-14
1z7x_W		461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-13
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-12
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-11
3goz_A		362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-06
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-12
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-10
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-04
3e4g_A		176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	8e-12
3un9_A		372	NLR family member X1; leucine rich repeat (LRR), a	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-11
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-10
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-09
2ca6_A		386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-06
1io0_A		185	Tropomodulin; LRR protein, right-handed super-heli	2e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-08
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-06
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-05
2ra8_A		362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A		197	Putative uncharacterized protein; internalin-A, le	8e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3j0a_A		844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-06
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A		680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	9e-06
4ecn_A		876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A		606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
2z81_A		549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
3t6q_A		606	CD180 antigen; protein-protein complex, leucine ri	4e-05
1m9s_A		605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	5e-05
1pgv_A		197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-04
2z7x_B		520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
1h6u_A		308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
4fmz_A		347	Internalin; leucine rich repeat, structural genomi	2e-04
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A		457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
2z63_A		570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1xeu_A		263	Internalin C; cellular invasion, leucine-rich repe	5e-04
3o53_A		317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-04
3fxi_A		605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

 Score =  155 bits (393), Expect = 2e-40
 Identities = 77/494 (15%), Positives = 156/494 (31%), Gaps = 60/494 (12%)

Query: 61  ALSTEIIKPLLPPNPYLRSLKVDCGKLDDSAIELMLR---PTLHELCLHNCADFSGKLLS 117
              T  +  +      L+S+      + D  ++ + +     L  L L  C+ F+   L 
Sbjct: 98  GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL 157

Query: 118 EIGGKCKDLRSLYLGSVAEKRGRSIHISDLEELLNGCPQLEALILMFDISLFLRHNFARV 177
            I   C+ +++L +    E          L EL      LE L         +       
Sbjct: 158 SIVTHCRKIKTLLM---EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET 214

Query: 178 WALASEKLTSLEIGYISSV----------MVTELLSPNVEPHQSPNQIRPSILPGIQKLC 227
            A     L S+++G    +           + E    ++       +   +++   +   
Sbjct: 215 IARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274

Query: 228 LSVDYITDAMVGTISQGLVSLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLI 287
           L + Y+    +  +      +  LDL  A L         T      I +   L+ L   
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLE--------TEDHCTLIQKCPNLEVLETR 326

Query: 288 RSQEFLITYFRRVNDLGILLMADKCASMESICLGGFC----------RVTDTGFKTILHS 337
                       + D G+ ++A  C  ++ + +               V+  G   +   
Sbjct: 327 NV----------IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376

Query: 338 CSNLYKLRVSHGTQLTDLVFHDISATSLSLTHV-------CLRWCNLLTNHAIKSLASN- 389
           C  L  + V + + +T+     I     +L            R  +L  ++ ++SL    
Sbjct: 377 CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGC 435

Query: 390 TGIKVLDLR-DCKNLGDEALRAISSL-PQLKILLLDGSDISDVGVSYLRLTVITSLVKLS 447
             ++          L D  L  I    P ++ +LL     SD G+         +L KL 
Sbjct: 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLE 494

Query: 448 LRGCKRLTDKCISALFDGTSKLQLQELDLSNLP-HLSDNGILTLATCRVPISELRVRQCP 506
           +RGC   +++ I+A       L+   L +      ++   ++ +A     I  +  R+ P
Sbjct: 495 MRGC-CFSERAIAAAVTKLPSLR--YLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVP 551

Query: 507 LIGDTSVIALASML 520
            +     I      
Sbjct: 552 EVNQQGEIREMEHP 565

PyMOL of 3ogk

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386	Back alignment and structure

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606	Back alignment and structure

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549	Back alignment and structure

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606	Back alignment and structure

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197	Back alignment and structure

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520	Back alignment and structure

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308	Back alignment and structure

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457	Back alignment and structure

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570	Back alignment and structure

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263	Back alignment and structure

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317	Back alignment and structure

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		641
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2		284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1		460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 21/246 (8%)

Query: 359 DISATSLSLTHVCLRWCNLLTNHAIKSLASNTGIKVLDLRDCKNLGDEALRAISSLPQLK 418
           D++   LS   +  R      +  +    S   ++ +DL +           +S   +L+
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 419 ILLLDGSDISDVGVSYLRLTVITSLVKLSLRGCKRLTDKCISALFDGTSKLQL------- 471
            L L+G  +SD  V+ L     ++LV+L+L GC   ++  +  L    S+L         
Sbjct: 75  NLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 132

Query: 472 ----------QELDLSNLPHLSDNGILTLATCRVPISELRVRQCPLIGDTSVIALASMLV 521
                            +  L+ +G           + +R     +  D S   +     
Sbjct: 133 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 522 DDDRWYGSSIRLLDLYNCGGITQLAFRWLKKPYFPRLRWLGVTGSVNRDILDALARSRPF 581
             + +  + ++ L L  C  I       L +   P L+ L V G V    L  L  + P 
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGE--IPTLKTLQVFGIVPDGTLQLLKEALPH 250

Query: 582 LNVACR 587
           L + C 
Sbjct: 251 LQINCS 256

PyMOL of d2astb2

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		641
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d1z7xw1		460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	100.0
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	100.0
d2astb2		284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.98
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.92
d2ca6a1		344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.91
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.86
d2omza2		384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.65
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.63
d1ozna_		284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.61
d1xkua_		305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.61
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.54
d1h6ua2		227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.49
d1h6ta2		210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.49
d2omxa2		199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.45
d1p9ag_		266	von Willebrand factor binding domain of glycoprote	99.45
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.38
d1ogqa_		313	Polygalacturonase inhibiting protein PGIP {Kidney	99.36
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.34
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	99.33
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.27
d1jl5a_		353	Leucine rich effector protein YopM {Yersinia pesti	99.24
d1pgva_		167	Tropomodulin C-terminal domain {nematode (Caenorha	99.22
d1a9na_		162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d1io0a_		166	Tropomodulin C-terminal domain {Chicken (Gallus ga	99.14
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d1xwdc1		242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.12
d1m9la_		198	Outer arm dynein light chain 1 {Green algae (Chlam	99.01
d1w8aa_		192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.96
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.87
d1nexb1		100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.87
d1dcea3		124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.86
d1fs1a1		41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.77
d2ovrb1		102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.69
d1p22a1		118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.47
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.28
d2ifga3		156	High affinity nerve growth factor receptor, N-term	98.19
d1koha1		162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.85

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-30  Score=166.33  Aligned_cols=413  Identities=22%  Similarity=0.279  Sum_probs=183.6

Q ss_pred             CCCEEEEEECCCCCHHHHHHHHC--CCCCEECCCCCCCCCHHHHHHH---HHCCCCCCEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             99507996338999389983211--5536030467888617999999---721988766754665322586444443999
Q 006538           75 PYLRSLKVDCGKLDDSAIELMLR--PTLHELCLHNCADFSGKLLSEI---GGKCKDLRSLYLGSVAEKRGRSIHISDLEE  149 (641)
Q Consensus        75 ~~L~~L~L~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~l~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  149 (641)
                      ++|++|+++++++++..+..+..  +++++|+|.+|. +++.++..+   .+.+++|++|+++++      .+++.++..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N------~i~~~~~~~   74 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN------ELGDVGVHC   74 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC------CCHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCC-CCHHHHHHHHHHHHCCCCCCEEECCCC------CCCHHHHHH
T ss_conf             9877798208958868999999767799999828999-988999999999853999888979598------597289999


Q ss_pred             HHHC----CCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             9823----984341312433232231136998764137779676246575767522299988999998768997888618
Q 006538          150 LLNG----CPQLEALILMFDISLFLRHNFARVWALASEKLTSLEIGYISSVMVTELLSPNVEPHQSPNQIRPSILPGIQK  225 (641)
Q Consensus       150 ~~~~----~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~  225 (641)
                      +...    ..+|++|++..+  .+.+.+...+..                     .               +..+++|++
T Consensus        75 l~~~l~~~~~~L~~L~L~~n--~it~~~~~~l~~---------------------~---------------l~~~~~L~~  116 (460)
T d1z7xw1          75 VLQGLQTPSCKIQKLSLQNC--CLTGAGCGVLSS---------------------T---------------LRTLPTLQE  116 (460)
T ss_dssp             HHHTTCSTTCCCCEEECTTS--CCBGGGHHHHHH---------------------H---------------TTSCTTCCE
T ss_pred             HHHHHHCCCCCCCEEECCCC--CCCCCCCCCCCC---------------------H---------------HHCCCCCCC
T ss_conf             99998437887788778887--754322101211---------------------0---------------000343200


Q ss_pred             EEEECCCCCHHHHHHHHHCCC----CCCEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf             884215789789999994299----9748845899987885445555477786323999738981022111112342248
Q 006538          226 LCLSVDYITDAMVGTISQGLV----SLTHLDLRDAPLIEPRITFDLTNSGLQQINQHGKLKHLSLIRSQEFLITYFRRVN  301 (641)
Q Consensus       226 L~L~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  301 (641)
                      |+++.+.+++.....+.....    ..........         ....                              ..
T Consensus       117 L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~---------~~~~------------------------------~~  157 (460)
T d1z7xw1         117 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC---------SLSA------------------------------AS  157 (460)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS---------CCBG------------------------------GG
T ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCC---------CCCH------------------------------HH
T ss_conf             24443320234555544301355433322222232---------2200------------------------------11


Q ss_pred             HHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHH----HHHCCCCCEEEECCCCCCCHHH--HHHHHHCCCCCCEEECCCC
Q ss_conf             368999997099864899459777898899999----9839995299815889999999--9999841999978981568
Q 006538          302 DLGILLMADKCASMESICLGGFCRVTDTGFKTI----LHSCSNLYKLRVSHGTQLTDLV--FHDISATSLSLTHVCLRWC  375 (641)
Q Consensus       302 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~~  375 (641)
                      ...........+.++.+.++++ .....+....    .........+.+..+.......  ........+.++.+.+.++
T Consensus       158 ~~~~~~~l~~~~~~~~~~ls~~-~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n  236 (460)
T d1z7xw1         158 CEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  236 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHC
T ss_conf             0011222333322222332222-124555543234332112210012411245421011012233222222100100211


Q ss_pred             CCCCHHHHHH-----HHCCCCCCEEECCCCCCCCHHHHH----HHHCCCCCCEEECCCCCCCHHHHHHHHHH---CCCCC
Q ss_conf             8887889998-----026999899946899888926657----53089897599836876786999999985---18886
Q 006538          376 NLLTNHAIKS-----LASNTGIKVLDLRDCKNLGDEALR----AISSLPQLKILLLDGSDISDVGVSYLRLT---VITSL  443 (641)
Q Consensus       376 ~~l~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~~~L  443 (641)
                       .+.+.+...     ......++.+++++| .+......    .+...+.++.++++++.+++.++..+...   ..+.|
T Consensus       237 -~~~~~~~~~~~~~~~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L  314 (460)
T d1z7xw1         237 -KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL  314 (460)
T ss_dssp             -BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCC
T ss_pred             -CCCCCCCCHHHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf             -22334420110001111111000013454-3321233433221112343334444433322456421110123334443


Q ss_pred             CEEECCCCCCCCHHHHHHHH---CCCCCCCCCEEECCCCCCCCHHHHHHHHH----CCCCCCEEECCCCCCCCHHHHHHH
Q ss_conf             48845788888878999974---14898980289369999999788999981----699987883169998798999999
Q 006538          444 VKLSLRGCKRLTDKCISALF---DGTSKLQLQELDLSNLPHLSDNGILTLAT----CRVPISELRVRQCPLIGDTSVIAL  516 (641)
Q Consensus       444 ~~L~l~~c~~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~i~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~~~~l  516 (641)
                      +.+.+++|. +++.+...+.   ..+  ++|++|++++ +.+++.++..+++    ..+.|++|++++| .+++.++..+
T Consensus       315 ~~l~l~~~~-l~~~~~~~l~~~~~~~--~~L~~L~Ls~-N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l  389 (460)
T d1z7xw1         315 ESLWVKSCS-FTAACCSHFSSVLAQN--RFLLELQISN-NRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSL  389 (460)
T ss_dssp             CEEECTTSC-CBGGGHHHHHHHHHHC--SSCCEEECCS-SBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred             CCCCCCCCC-HHHHHHHHCCCCCCCC--CCHHHHHEEE-ECCCCCCCCHHHHHHHCCCCCCCEEECCCC-CCCHHHHHHH
T ss_conf             333233341-0233443213322110--1111320121-013576640011122045677788989799-7975999999


Q ss_pred             HHCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHC---CCCCCCEEEEECCCC-C---HHHHHHHHHHCCCEEEE
Q ss_conf             802345766679986489526899999999999638---799982099820778-9---88999999519980870
Q 006538          517 ASMLVDDDRWYGSSIRLLDLYNCGGITQLAFRWLKK---PYFPRLRWLGVTGSV-N---RDILDALARSRPFLNVA  585 (641)
Q Consensus       517 ~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~l~~---~~~~~L~~L~l~~~~-~---~~~~~~~~~~~~~l~~~  585 (641)
                      +..+.     .+++|++|+++++. +++.++..+..   .....|+.|.+.++. .   .+.++.+....|.+++.
T Consensus       390 ~~~l~-----~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         390 AATLL-----ANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHH-----HCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHH-----CCCCCCEEECCCCC-CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf             99996-----29988989899996-987999999999974788667898989878989999999999759998995

PyMOL of d1z7xw1

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}	Back information, alignment and structure

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}	Back information, alignment and structure

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}	Back information, alignment and structure

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}	Back information, alignment and structure

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure