Citrus Sinensis ID: 006554

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640

MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMESSLSSRDKKKSSRQTNDMHTKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPSV

ccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccEEEEEccccccccccccEEEccccccccccHHHHHHHHHccccccEEHHcccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccccc

ccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEHHHEEEEccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccHHHHHHHccEEcHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHccHHHHHHHHHHHHHHcccccccHHHHHHcccEEccccccccccEEEEEEEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEEEEcccHHcccccccc

mvdgyclsdlvkvprATRVMVRKLCELGWLFRKVRGYIsesmdrfpaedvgtVGQAFCAALQDELLEYYKLLAVLEAQamnpiplvsesagsgnylsLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFvvghpvkaeslwrdgyrlhsgmlpsfISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAagtstrrgslgygetdALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIvgpelsepantissFKLAGLLESAIrssnaqyddpdiLDRLRVKlmphgtgdrgwdvfsleydarvpldtlfTESVMARYLKIFNFLWKLRRVEHALIGAWkamkpncitsnsftKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMESslssrdkkkssrqtndmhtkpgswlsdGRKALTQRAGEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEfytrlrpsv

mvdgyclsdlvkvpratrVMVRKlcelgwlfrKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLvsesagsgnyLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEaataagtstrrgslgygeTDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSsnaqyddpdiLDRLRVKLMPhgtgdrgwdvfSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELqartmesslssrdkkkssrqtndmhtkpgswlsdgrKALTQRAGEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPSV

MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWadaateaataagtstRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEaakdlddllaaHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMEsslssrdkkkssrQTNDMHTKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPSV

***GYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAAGT*TRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIR*******************************************************LDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTR*****

MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISES*******DVGTVGQAFCAALQDELLEYYKLLAVLEAQAMN************NYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPE********SSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSN*******AVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQA*******************************************FLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRL****

MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQAR**********************TKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPSV

MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPL*******GNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMESS********************************QRAGEFLRNMEQELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRL****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MVDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFxxxxxxxxxxxxxxxxxxxxxAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQARTMESSLSSRDKKKSSRQTNDMHTKPGSWLSDGRKALTQRAGEFxxxxxxxxxxxxxxxxxxxxxFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPSV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		640	2.2.26 [Sep-21-2011]
O73787		906	Gamma-tubulin complex com	N/A	no	0.945	0.667	0.374	1e-118
Q96CW5		907	Gamma-tubulin complex com	yes	no	0.946	0.668	0.365	1e-115
P58854		905	Gamma-tubulin complex com	yes	no	0.937	0.662	0.372	1e-114
Q95ZG4		813	Spindle pole body compone	yes	no	0.896	0.706	0.298	6e-97
Q9XYP8		917	Gamma-tubulin complex com	yes	no	0.925	0.645	0.306	7e-82
Q9USQ2		832	Spindle pole body compone	yes	no	0.895	0.688	0.305	1e-78
Q9BSJ2		902	Gamma-tubulin complex com	no	no	0.875	0.620	0.245	2e-35
Q5R5J6		902	Gamma-tubulin complex com	yes	no	0.875	0.620	0.247	2e-35
Q921G8		905	Gamma-tubulin complex com	no	no	0.889	0.628	0.247	4e-35
P53540		846	Spindle pole body compone	yes	no	0.696	0.527	0.216	1e-31

>sp\|O73787\|GCP3_XENLA Gamma-tubulin complex component 3 homolog OS=Xenopus laevis GN=tubgcp3 PE=1 SV=1	Back alignment and function desciption

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/646 (37%), Positives = 354/646 (54%), Gaps = 41/646 (6%)

Query: 5   YCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISE-SMDRFPAEDVGTVGQAFCAALQD 63
           Y +   V V ++ + +  KL ELGWL  K++ Y  + S+DR      G VGQ+FCAAL  
Sbjct: 274 YKVDGKVAVSKSLKDITSKLSELGWLHNKIKKYTDQRSLDR----AFGLVGQSFCAALHQ 329

Query: 64  ELLEYYKLLAVLEAQAM----NPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLV 119
           EL EYY+LL+VL +Q        + L  ES+     L+LRRL VW  +P ++++ +A LV
Sbjct: 330 ELKEYYRLLSVLHSQLQVEDDQGVNLGVESS-----LTLRRLLVWTFDPKIRLKTLAALV 384

Query: 120 DKCRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAE 179
           D C+  +GG +A A+H + + GD  +   ++ +L  V  P+   +  W+ +GELED + E
Sbjct: 385 DHCQGRKGGELASAVHAYTKTGDPYMRSLVQHILGLVAYPILNFLYRWIYDGELEDTYHE 444

Query: 180 FFVVGHPV-KAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADA 238
           FFV   PV K + LW D Y L   M+PSF++   ++++L  GKSINFL   C D+  A  
Sbjct: 445 FFVASDPVVKTDRLWHDKYSLRKSMIPSFMTMDQSRKVLLIGKSINFLHQVCHDQTPASK 504

Query: 239 ATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRY 298
           A     +A +      L     +A +T +  A     K+LLDV+ K Y   EH  A++RY
Sbjct: 505 AMAVGKSAESPKDAAELFTDLENAFQTKIDAAYFDTSKYLLDVLNKNYNLLEHMQAMRRY 564

Query: 299 LLLGQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKL 358
           LLLGQGDF+++LMD++ PEL  PA T+    L G+LE+A+R++NAQ+D+P+IL RL V+L
Sbjct: 565 LLLGQGDFIRHLMDLLKPELVRPATTLYQHNLTGILETAVRATNAQFDNPEILKRLDVRL 624

Query: 359 MPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMK 418
           +    GD GWDVFSL+Y    P+ T+FT   M+ YL++FNFLW+ +R+E+ L   WK   
Sbjct: 625 LEVSPGDTGWDVFSLDYHVDGPIATVFTRECMSHYLRVFNFLWRAKRMEYILTDIWKGHM 684

Query: 419 PNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNE 478
            N        KL   +  +L   L +C +L  EM HF+  +QYYI FEVLE SW    N+
Sbjct: 685 CNA-------KLLKGMP-ELSGVLHQCHILASEMVHFIHQMQYYITFEVLECSWDELWNK 736

Query: 479 MEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYE-GI 537
           +  A+DLD ++AAH+ +L +I  + LL   S++L   L  +FD I+ F++  D LY   +
Sbjct: 737 VLKAQDLDHIIAAHDVFLDTIISRCLLDSESRALLNQLRAVFDQIIEFQNAQDALYRAAL 796

Query: 538 RELQARTMESSLSSRDKKKSSRQTNDMHTKPGSW-----LSDGRKALTQRAGEFLRNMEQ 592
            ELQ R          + +            G W       D      Q   E +  M  
Sbjct: 797 EELQQRLQFEERKKERESE------------GEWGVTAAEEDVENKRIQEFQESIPKMRS 844

Query: 593 ELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRP 638
           +L    + Y  +++ FL  L       L+FL FRLDF E Y    P
Sbjct: 845 QLRILTHFYQGIVQQFLVLLTTSTDESLRFLSFRLDFNEHYKAREP 890

Necessary for the recruitment of gamma-tubulin to the centrosome and for the formation of a functional centrosome.
Xenopus laevis (taxid: 8355)

>sp\|Q96CW5\|GCP3_HUMAN Gamma-tubulin complex component 3 OS=Homo sapiens GN=TUBGCP3 PE=1 SV=2	Back alignment and function description

>sp\|P58854\|GCP3_MOUSE Gamma-tubulin complex component 3 OS=Mus musculus GN=Tubgcp3 PE=2 SV=2	Back alignment and function description

>sp\|Q95ZG4\|SPC98_DICDI Spindle pole body component 98 OS=Dictyostelium discoideum GN=spc98 PE=1 SV=2	Back alignment and function description

>sp\|Q9XYP8\|GCP3_DROME Gamma-tubulin complex component 3 homolog OS=Drosophila melanogaster GN=l(1)dd4 PE=1 SV=2	Back alignment and function description

>sp\|Q9USQ2\|ALP6_SCHPO Spindle pole body component alp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alp6 PE=1 SV=2	Back alignment and function description

>sp\|Q9BSJ2\|GCP2_HUMAN Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2	Back alignment and function description

>sp\|Q5R5J6\|GCP2_PONAB Gamma-tubulin complex component 2 OS=Pongo abelii GN=TUBGCP2 PE=2 SV=1	Back alignment and function description

>sp\|Q921G8\|GCP2_MOUSE Gamma-tubulin complex component 2 OS=Mus musculus GN=Tubgcp2 PE=2 SV=2	Back alignment and function description

>sp\|P53540\|SPC98_YEAST Spindle pole body component SPC98 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SPC98 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
255583160		855	gamma-tubulin complex component, putativ	0.996	0.746	0.887	0.0
225441495		854	PREDICTED: gamma-tubulin complex compone	0.998	0.748	0.881	0.0
224091597		860	tubulin gamma complex-associated protein	0.998	0.743	0.882	0.0
224138122		844	tubulin gamma complex-associated protein	0.975	0.739	0.863	0.0
449453900		846	PREDICTED: gamma-tubulin complex compone	0.995	0.752	0.854	0.0
449502534		846	PREDICTED: LOW QUALITY PROTEIN: gamma-tu	0.995	0.752	0.852	0.0
356504882		844	PREDICTED: gamma-tubulin complex compone	0.993	0.753	0.826	0.0
356570524		842	PREDICTED: gamma-tubulin complex compone	0.993	0.755	0.821	0.0
15240121		838	spindle pole body component 98 [Arabidop	0.975	0.744	0.809	0.0
297806687		838	hypothetical protein ARALYDRAFT_487478 [	0.975	0.744	0.807	0.0

>gi\|255583160\|ref\|XP_002532346.1\| gamma-tubulin complex component, putative [Ricinus communis] gi\|223527963\|gb\|EEF30048.1\| gamma-tubulin complex component, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1159 bits (2998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/638 (88%), Positives = 602/638 (94%)

Query: 2   VDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAAL 61
           +DGY L D VKVP ATR+MVRKLCELGWLFRKV+GYISESMDRFPAEDVGTVGQAFCAAL
Sbjct: 217 IDGYVLMDNVKVPTATRLMVRKLCELGWLFRKVKGYISESMDRFPAEDVGTVGQAFCAAL 276

Query: 62  QDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDK 121
           QDEL EYYKLLAVLEAQ+MNPIPL+SE A S NYLSLRRLSVWFAEPMVKMRLMAVLVDK
Sbjct: 277 QDELSEYYKLLAVLEAQSMNPIPLISEMASSSNYLSLRRLSVWFAEPMVKMRLMAVLVDK 336

Query: 122 CRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFF 181
           CRVLRGGAMAGAIHLHAQHGD LVHEFM+ LL+RVCSPLFEMVRSWVLEGELED+FAEFF
Sbjct: 337 CRVLRGGAMAGAIHLHAQHGDPLVHEFMRNLLQRVCSPLFEMVRSWVLEGELEDLFAEFF 396

Query: 182 VVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATE 241
           VVG PVKAESLWR+GYRLH+GMLPSFIS SLAQRILRTGKSINFLRVCCDDRGWAD ATE
Sbjct: 397 VVGQPVKAESLWREGYRLHAGMLPSFISPSLAQRILRTGKSINFLRVCCDDRGWADTATE 456

Query: 242 AATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLL 301
           AATAAGT+TRRGSLGYGETDALETLV+EAAKR DKHLLDV+YK YKF+EHCLAIKRYLLL
Sbjct: 457 AATAAGTTTRRGSLGYGETDALETLVVEAAKRTDKHLLDVMYKTYKFKEHCLAIKRYLLL 516

Query: 302 GQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPH 361
           GQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVK+MPH
Sbjct: 517 GQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKMMPH 576

Query: 362 GTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNC 421
           GTGDRGWDVFSLEYDARVPLDT+FT+SVMARYL+IFNFLWKLRRVEHALIGAWK MKPNC
Sbjct: 577 GTGDRGWDVFSLEYDARVPLDTVFTKSVMARYLRIFNFLWKLRRVEHALIGAWKTMKPNC 636

Query: 422 ITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEA 481
           ITS++F KLQ AVKLQLLSTLRRCQVLWDEMNHF+TNLQYYIMFEVLEVSWS+FSN+ME 
Sbjct: 637 ITSHAFIKLQGAVKLQLLSTLRRCQVLWDEMNHFITNLQYYIMFEVLEVSWSDFSNDMEV 696

Query: 482 AKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQ 541
           A+DLDDLLAAHEKYLHSI EKSLLGERSQ L+KSLFVLFDLILRFRSHADRLYEGI ELQ
Sbjct: 697 ARDLDDLLAAHEKYLHSIVEKSLLGERSQLLYKSLFVLFDLILRFRSHADRLYEGIHELQ 756

Query: 542 ARTMESSLSSRDKKKSSRQTNDMHTKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEY 601
           ARTM S+L S+DKKKS RQ  D  ++PGSW+SDGRKALTQRAGEFL+NM  ELD  A EY
Sbjct: 757 ARTMASTLPSQDKKKSRRQATDKSSEPGSWISDGRKALTQRAGEFLQNMGHELDTVAKEY 816

Query: 602 TSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPS 639
           T+LL+ FL+QLPVQQHVDLKFLLFRLDFTEFY+RL P+
Sbjct: 817 TTLLKGFLSQLPVQQHVDLKFLLFRLDFTEFYSRLCPN 854

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225441495\|ref\|XP_002275839.1\| PREDICTED: gamma-tubulin complex component 3 homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224091597\|ref\|XP_002309295.1\| tubulin gamma complex-associated protein [Populus trichocarpa] gi\|222855271\|gb\|EEE92818.1\| tubulin gamma complex-associated protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224138122\|ref\|XP_002322735.1\| tubulin gamma complex-associated protein [Populus trichocarpa] gi\|222867365\|gb\|EEF04496.1\| tubulin gamma complex-associated protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449453900\|ref\|XP_004144694.1\| PREDICTED: gamma-tubulin complex component 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449502534\|ref\|XP_004161669.1\| PREDICTED: LOW QUALITY PROTEIN: gamma-tubulin complex component 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356504882\|ref\|XP_003521223.1\| PREDICTED: gamma-tubulin complex component 3 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|356570524\|ref\|XP_003553435.1\| PREDICTED: gamma-tubulin complex component 3 homolog [Glycine max]	Back alignment and taxonomy information

>gi|15240121|ref|NP_196286.1| spindle pole body component 98 [Arabidopsis thaliana] gi|9759296|dbj|BAB09802.1| gamma-tubulin interacting protein-like [Arabidopsis thaliana] gi|20466522|gb|AAM20578.1| gamma-tubulin interacting protein-like [Arabidopsis thaliana] gi|34365713|gb|AAQ65168.1| At5g06680 [Arabidopsis thaliana] gi|332003666|gb|AED91049.1| spindle pole body component 98 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297806687\|ref\|XP_002871227.1\| hypothetical protein ARALYDRAFT_487478 [Arabidopsis lyrata subsp. lyrata] gi\|297317064\|gb\|EFH47486.1\| hypothetical protein ARALYDRAFT_487478 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
TAIR\|locus:2170164		838	SPC98 "spindle pole body compo	0.975	0.744	0.766	4e-264
ZFIN\|ZDB-GENE-030616-538		909	tubgcp3 "tubulin, gamma comple	0.946	0.666	0.380	4.6e-105
UNIPROTKB\|F1P2S9		895	TUBGCP3 "Uncharacterized prote	0.956	0.683	0.359	6.7e-104
UNIPROTKB\|E2R3X7		907	TUBGCP3 "Uncharacterized prote	0.946	0.668	0.356	1.7e-100
UNIPROTKB\|F1RN46		910	TUBGCP3 "Uncharacterized prote	0.959	0.674	0.348	5.6e-100
UNIPROTKB\|Q96CW5		907	TUBGCP3 "Gamma-tubulin complex	0.957	0.675	0.349	7.1e-100
UNIPROTKB\|F1LV14		902	Tubgcp3 "Protein Tubgcp3" [Rat	0.95	0.674	0.356	9.1e-100
MGI\|MGI:2183752		905	Tubgcp3 "tubulin, gamma comple	0.95	0.671	0.356	3.1e-99
UNIPROTKB\|E1BNG7		907	TUBGCP3 "Uncharacterized prote	0.957	0.675	0.346	6.4e-99
DICTYBASE\|DDB_G0283909		813	spc98 "spindle pole body compo	0.409	0.322	0.362	1.2e-92

TAIR\|locus:2170164 SPC98 "spindle pole body component 98" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2541 (899.5 bits), Expect = 4.0e-264, P = 4.0e-264
 Identities = 487/635 (76%), Positives = 541/635 (85%)

Query:     2 VDGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAAL 61
             +DGY + + VKVPRATR+MVR L ELGWLFRKV+ +I+ESMDRFPAEDVGTVGQAFCAAL
Sbjct:   211 IDGYAVQESVKVPRATRIMVRMLSELGWLFRKVKTFITESMDRFPAEDVGTVGQAFCAAL 270

Query:    62 QDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDK 121
             QDEL +YYKLLAVLEAQAMNPIPLVSESA S NYLSLRRLSVWFAEPMVKMRLMAVLVDK
Sbjct:   271 QDELSDYYKLLAVLEAQAMNPIPLVSESASSNNYLSLRRLSVWFAEPMVKMRLMAVLVDK 330

Query:   122 CRVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFF 181
             C+VLRGGAMAGAIHLHAQHGD LVH+FM  LLR VCSPLFEMVRSWVLEGELED F EFF
Sbjct:   331 CKVLRGGAMAGAIHLHAQHGDPLVHDFMMSLLRCVCSPLFEMVRSWVLEGELEDTFGEFF 390

Query:   182 VVGHPVKAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWXXXXXX 241
             VVG PVK + LWR+GY+LH  MLPSFIS SLAQRILRTGKSINFLRVCCDD GW      
Sbjct:   391 VVGQPVKVDLLWREGYKLHPAMLPSFISPSLAQRILRTGKSINFLRVCCDDHGWADAASE 450

Query:   242 XXXXXXXXXRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLL 301
                      RRG LGYGETDALE LV EAAKRIDKHLLDV+YKRYKF+EHCLAIKRYLLL
Sbjct:   451 AAAASGTTTRRGGLGYGETDALEHLVTEAAKRIDKHLLDVLYKRYKFKEHCLAIKRYLLL 510

Query:   302 GQGDFVQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLMPH 361
             GQGDFVQYLMDIVGP+LSEPAN ISSF+LAG LE+AIR+SNAQYDD D+LDRLRVK+MPH
Sbjct:   511 GQGDFVQYLMDIVGPKLSEPANNISSFELAGFLEAAIRASNAQYDDRDMLDRLRVKMMPH 570

Query:   362 GTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNC 421
             G+GDRGWDVFSLEY+ARVPLDT+FTESV+++YL++FNFLWKL+RVEHALIG WK MKPNC
Sbjct:   571 GSGDRGWDVFSLEYEARVPLDTVFTESVLSKYLRVFNFLWKLKRVEHALIGIWKTMKPNC 630

Query:   422 ITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEX 481
             ITSNSF KLQ +VKLQLLS LRRCQVLW+EMNHFVTN QYYIMFEVLEVSWSNFS EME 
Sbjct:   631 ITSNSFVKLQSSVKLQLLSALRRCQVLWNEMNHFVTNFQYYIMFEVLEVSWSNFSKEMEA 690

Query:   482 XXXXXXXXXXHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHADRLYEGIRELQ 541
                       HEKYL++I  KSLLGE+SQ++ +SLFVLF+LILRFRSHADRLYEGI ELQ
Sbjct:   691 AKDLDDLLAAHEKYLNAIVGKSLLGEQSQTIRESLFVLFELILRFRSHADRLYEGIHELQ 750

Query:   542 ARTMEXXXXXXXXXXXXXQTNDMHTKPGSWLSDGRKALTQRAGEFLRNMEQELDATANEY 601
              R+ E             +  +   +PGSW+S+GRK LTQRAGEFL++M Q++D+ A EY
Sbjct:   751 IRSKESG-----------REKNKSQEPGSWISEGRKGLTQRAGEFLQSMSQDMDSIAKEY 799

Query:   602 TSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRL 636
             TS L+ FL+ LP+QQ VDLKFL FRLDFTEFY+RL
Sbjct:   800 TSSLDGFLSLLPLQQSVDLKFLFFRLDFTEFYSRL 834

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0007020 "microtubule nucleation" evidence=IEA;TAS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0009898 "internal side of plasma membrane" evidence=IDA

GO:0015631 "tubulin binding" evidence=ISS

GO:0000930 "gamma-tubulin complex" evidence=IDA

ZFIN\|ZDB-GENE-030616-538 tubgcp3 "tubulin, gamma complex associated protein 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P2S9 TUBGCP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R3X7 TUBGCP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RN46 TUBGCP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96CW5 TUBGCP3 "Gamma-tubulin complex component 3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LV14 Tubgcp3 "Protein Tubgcp3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:2183752 Tubgcp3 "tubulin, gamma complex associated protein 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BNG7 TUBGCP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0283909 spc98 "spindle pole body component 98" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00025404001	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (841 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020711001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (691 aa)	•	•	•	•	0.556
	GSVIVG00028020001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (743 aa)	•	•	•	•	0.466

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		640
pfam04130		528	pfam04130, Spc97_Spc98, Spc97 / Spc98 family	1e-124

>gnl\|CDD\|217915 pfam04130, Spc97_Spc98, Spc97 / Spc98 family	Back alignment and domain information

 Score =  379 bits (974), Expect = e-124
 Identities = 161/513 (31%), Positives = 259/513 (50%), Gaps = 48/513 (9%)

Query: 18  RVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEA 77
           R ++ ++ ELG L+R++R +I        +   G V QA  AAL++ L EY +L+A LE+
Sbjct: 38  RSLLNRILELGTLYRRLREFIESISSS--SSLYGPVLQALAAALREILNEYLQLVAQLES 95

Query: 78  QAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKCR--VLRGGAMAGAIH 135
           +             S   L+L +L       ++ +RL+A +V++     L+GG +  +++
Sbjct: 96  EL-----------LSNGTLTLLQLLAELQPAILLLRLLAEIVEEILSKSLKGGQLLSSLY 144

Query: 136 --LHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFVVGH------PV 187
             + +Q GD  + E + RLL     P  +M+  W+L GEL+D + EFF+  +        
Sbjct: 145 ERIASQTGDPDLRELLLRLLNAASQPYLQMLSRWLLHGELDDPYGEFFIKENESEEVLSD 204

Query: 188 KAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWA-DAATEAATAA 246
            ++  W + Y L   MLPSF+ + LA++IL  GKS+NFLR CC     A D +   +   
Sbjct: 205 DSDEYWEERYTLREDMLPSFLPKELARKILEIGKSLNFLRECCKSHPLAKDQSLALSLRE 264

Query: 247 GTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDF 306
              +        +T ALE L+  A     K LLD++ + Y    H  A+K Y LLG+GDF
Sbjct: 265 ALVSLLKLFSSLDTSALELLIDSAYLEASKSLLDLLLEEYDLLGHLQALKDYFLLGRGDF 324

Query: 307 VQYLMDIVGPELSEPANTISSFKLAGLLESAIRSSNAQY---------------DDPDIL 351
           +   ++ +  EL +PAN++S   L  LL+ A+RSS++                 D  + L
Sbjct: 325 ISSFLESLFDELDKPANSLSDHALQSLLQEALRSSSSDDDPASSDLDELETKKSDSSETL 384

Query: 352 DRLRVKLMPHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALI 411
           +RL V  +   +G  G D  +L+Y    PL  + T   + +Y +IF FL +L+R E+ L 
Sbjct: 385 NRLDVSSLELSSGLSGLDALTLDYKVPWPLSLILTPEALKKYQRIFRFLLRLKRAEYLLN 444

Query: 412 GAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVS 471
             WK +           + +     +    LR+  +L  +M HFV +LQYYI  +V+E +
Sbjct: 445 KLWKELN---------KRRRLGSTRRNEPLLRKIWLLRFQMLHFVNSLQYYIQVDVIESN 495

Query: 472 WSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSL 504
           W     +++ AKDLD+L+AAHE YL SI     
Sbjct: 496 WQKLQEQLQKAKDLDELIAAHEDYLDSILSGCF 528

The spindle pole body (SPB) functions as the microtubule-organising centre in yeast. Members of this family are spindle pole body (SBP) components such as Spc97 and Spc98 that form a complex with gamma-tubulin. This family of proteins includes the grip motif 1 and grip moti 2. Length = 528

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		640
KOG2001		734	consensus Gamma-tubulin complex, DGRIP84/SPC97 com	100.0
KOG2000		879	consensus Gamma-tubulin complex, DGRIP91/SPC98 com	100.0
KOG2065		679	consensus Gamma-tubulin ring complex protein [Cyto	100.0
PF04130		542	Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR00	100.0
KOG4344		1121	consensus Uncharacterized conserved protein [Funct	99.94

>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]	Back alignment and domain information

Probab=100.00  E-value=1e-80  Score=650.45  Aligned_cols=543  Identities=25%  Similarity=0.468  Sum_probs=451.3

Q ss_pred             CceeecCCcCCChhHHHHHHHHhhhhHhHHHHHHHHhhhccCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 006554            3 DGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDVGTVGQAFCAALQDELLEYYKLLAVLEAQAMNP   82 (640)
Q Consensus         3 ~~f~i~~~~~~~~~~~~ll~~l~~lG~~~~~l~~fv~~~~~~~~~~~~g~~~~A~~~al~~~L~~y~~~l~~lE~~~~~~   82 (640)
                      -.|.|.|+  +.-+.|+++++++++|.+|..++.||++.    +....|.|.+|+|+|+++.|.+|+.+|+++|++.+  
T Consensus       131 ~~F~v~~~--fd~~ir~la~eilpl~~yy~~v~~fie~~----s~f~~G~vn~alaaAlr~ll~dyy~li~qlE~e~R--  202 (734)
T KOG2001|consen  131 IFFMVLPR--FDLAIRELAEEILPLASYYLLVQDFIEET----SFFEYGQVNHALAAALRELLYDYYELISQLEQELR--  202 (734)
T ss_pred             cceeeccc--hhHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            45888888  77799999999999999999999999985    23389999999999999999999999999999986  


Q ss_pred             CCccccccCCCCcccHHHHHHHhhchHHHHHHHHHHHHHh--cccCchhHHHHHHHH--cccCCHHHHHHHHHHHHHHhH
Q 006554           83 IPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC--RVLRGGAMAGAIHLH--AQHGDLLVHEFMKRLLRRVCS  158 (640)
Q Consensus        83 ~~~~~~~~~~~~~ltL~~l~~~l~~~~~~L~~l~~l~~~~--~~~~G~~lLs~l~~~--~~~Gd~~~~~~~~~ll~~~~~  158 (640)
                                .+.+||+.|+.+++|++..|+.++..+...  +..+||++|+.+++.  ...||+.++.++.++++.+++
T Consensus       203 ----------~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~as~  272 (734)
T KOG2001|consen  203 ----------TNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRNASQ  272 (734)
T ss_pred             ----------hccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence                      357899999999999999999877766543  567999999999986  478999999999999999999


Q ss_pred             HHHHHHHHHHhcCeecCCCCcceEeeccC--------CCcccccCceeEecCCCCCcCCHHHHHHHHHhhHHHHHHHHhh
Q 006554          159 PLFEMVRSWVLEGELEDIFAEFFVVGHPV--------KAESLWRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCC  230 (640)
Q Consensus       159 p~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~--------~~~~~W~~~y~l~~~~vP~Fl~~~~a~kIl~~GKsl~~Lr~~~  230 (640)
                      ||++|+..|++.|.++|||+||||.++..        ..+.||.++|+|+++.+|.|+. +.|+|||.|||++|++|+|+
T Consensus       273 ~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~-~~adkIL~tGKYLNVvReC~  351 (734)
T KOG2001|consen  273 PYCTMLEEWIYQGIINDPYQEFMIYDNLITKEDLPEDYTDKYWDQRYTIRKDQIPGFLL-SEADKILRTGKYLNVVRECG  351 (734)
T ss_pred             hHHHHHHHHHhcccccCchHhHhhhhcchhhhcCchhhhHHHHHHhheechhhcchHHH-HHHHHHHHhhhHHHHHHHhC
Confidence            99999999999999999999999998751        2468999999999999999996 79999999999999999999


Q ss_pred             cCCCcchhHHHHHHhcCCccccccccCCCchhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhcCCcchHHHH
Q 006554          231 DDRGWADAATEAATAAGTSTRRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYL  310 (640)
Q Consensus       231 ~~~~~~~~~~e~~~~~~~~~~~~~l~~~~~~~l~~~I~~~~~~~s~~l~~~l~~~~~L~~hL~~lr~~~Ll~~Gdf~~~f  310 (640)
                      .....+....+..         .+..+ +...++..|+++|..+|..++++|+++++|..||+.+|+||||.+|||+.+|
T Consensus       352 ~~v~~p~~~n~~~---------~~~~~-~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~F  421 (734)
T KOG2001|consen  352 KIVTIPQSSNEIN---------DPADL-MESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTF  421 (734)
T ss_pred             ccCCCCcchhhhc---------ccccc-chhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHH
Confidence            8766543321110         11112 2378999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccccCCCccccchhhHHHHHHHHHh-hhcCCCCCchhhhchheeecc---------------C-------C-----
Q 006554          311 MDIVGPELSEPANTISSFKLAGLLESAIR-SSNAQYDDPDILDRLRVKLMP---------------H-------G-----  362 (640)
Q Consensus       311 ~~~l~~~L~~~~~~~~~~~L~~~L~~ai~-~s~~~~d~~~~~~~l~v~~~~---------------~-------~-----  362 (640)
                      ++.+.++|.+|...+++.+|+.+|+.|+| .|.+.. || .-+.|.|.+.|               .       +     
T Consensus       422 ld~~~eEL~K~v~~i~p~kLqsLL~laLr~~s~a~~-Dp-~k~~L~i~~~~~~L~~ql~~~l~ie~~e~~ans~~dP~~~  499 (734)
T KOG2001|consen  422 LDKAEEELTKNVENISPEKLQSLLDLALREQSEAAN-DP-MKEDLKICVDPTDLITQLSHILAIEPEEESANSQADPLEH  499 (734)
T ss_pred             HHHHHHHHhcchhhcCHHHHHHHHHHHHHhhhcccC-Cc-hhhheeeeecHhhHHHHHHHHHhcCccccccccccCcchh
Confidence            99999999999999999999999999999 444433 33 22233333211               0       0     


Q ss_pred             CCCccceEEEEEeecCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccchhhHHHHHHHHHH
Q 006554          363 TGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWKAMKPNCITSNSFTKLQHAVKLQLLSTL  442 (640)
Q Consensus       363 ~~~~~~d~~~L~y~v~~PL~~i~t~~~m~~Y~~iF~fL~~lk~~~~~L~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~l  442 (640)
                      -..+|+++|+|+|+|||||++||++.+|.+||.|||+++.+|++++.|+.+|.....    .+.+..       ....+.
T Consensus       500 l~lsGlE~faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~----~r~~~~-------~~~q~~  568 (734)
T KOG2001|consen  500 LDLSGLEAFAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSK----ARSSNT-------KGAQIV  568 (734)
T ss_pred             ccccchhhheeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhccch-------HHHHHH
Confidence            134799999999999999999999999999999999999999999999999996432    111111       124677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHH
Q 006554          443 RRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDL  522 (640)
Q Consensus       443 ~~~~~lr~~m~~fv~~l~~Y~~~~VIe~~w~~l~~~l~~~~dld~l~~~H~~fL~~i~~~~~L~~~~~~l~~~l~~il~~  522 (640)
                      |..+.||++|++||++|.+|++++||||+|..|.+.+++++++|+++..|+.||+.|+++|+|+.. +.+++.+.++..+
T Consensus       569 r~s~~LR~RMl~fiqsi~~Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~-~~llk~~~kL~~v  647 (734)
T KOG2001|consen  569 RASFLLRQRMLNFIQSIEYYMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLS-PLLLKSFSKLYKV  647 (734)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCCh-HHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999999973 4688999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCCCcCcchhhhHhhhhhH-hHHHHHHHHHHHHHHH
Q 006554          523 ILRFRSHADRLYEGIRELQARTMESSLSSRDKKKSSRQTNDMHTKPGSWLSDGRKALTQRAGE-FLRNMEQELDATANEY  601 (640)
Q Consensus       523 ~~~F~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f  601 (640)
                      |+.||++++.+.... ..+..                  ..+.+. +++     +...++... .++++.+.++...+.|
T Consensus       648 Cl~f~~~~q~~~~~~-~~~~~------------------~~~~~~-~~~-----d~~~k~~~t~li~~leei~~~~~~~f  702 (734)
T KOG2001|consen  648 CLMFCSFTQKLTQSD-PTDEE------------------KNSVGH-PQF-----DEGRKEDDTLLISKLEEIISNADKNF  702 (734)
T ss_pred             HHHHHHHHHHHhccc-chhhh------------------hccccc-cch-----hhhhhhhhHHHHHHHHHHHHHhHHHH
Confidence            999999988775431 00000                  000000 111     111111111 2567778888899999


Q ss_pred             HHHHHHHHHhcC
Q 006554          602 TSLLEVFLAQLP  613 (640)
Q Consensus       602 ~~~~~~fl~~l~  613 (640)
                      .+.+.+|+..|+
T Consensus       703 ~~~l~~L~~rls  714 (734)
T KOG2001|consen  703 RDCLKNLLQRLS  714 (734)
T ss_pred             HHHHHHHHHHcc
Confidence            999999988887

>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]	Back alignment and domain information

>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]	Back alignment and domain information

>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin	Back alignment and domain information

>KOG4344 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		640
3rip_A		677	Crystal Structure Of Human Gamma-Tubulin Complex Pr		4e-15

>pdb|3RIP|A Chain A, Crystal Structure Of Human Gamma-Tubulin Complex Protein 4 (Gcp4) Length = 677

Back alignment and structure

Iteration: 1

Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 122/582 (20%), Positives = 211/582 (36%), Gaps = 102/582 (17%) Query: 14 PRATRVMVRKLCELGWLFRKVRGYISE------SMDRFPAEDV-----GTVGQAFCAALQ 62 P T V+ R LC LG + + +I + D P++ G +AFC L Sbjct: 36 PSETSVLNR-LCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHGIYLRAFCTGLD 94 Query: 63 DELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVKMRLMAVLVDKC 122 L Y + L LE + + L S NY L + + F MV + + K Sbjct: 95 SVLQPYRQALLDLEQEFLGDPHL---SISHVNYF-LDQFQLLFPSVMVVVEQI-----KS 145 Query: 123 RVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVLEGELEDIFAEFFV 182 + + G + ++ H+ G V ++++L +++ + +W+L G L D EFF+ Sbjct: 146 QKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFI 205 Query: 183 VGHPVKA----------ESLWRDG---------------------------YRLHSGMLP 205 P E L G + L +LP Sbjct: 206 KQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILP 265 Query: 206 SFISQSLAQRILRTGKSINFL---RVCCDDRGWXXXXXXXXXXXXXXXRRGSLGYGETDA 262 S+I +A++IL G+S+ V +G + + D Sbjct: 266 SYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELHRLKQQPLFSLVD- 324 Query: 263 LETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYLMDIVGPELSEPA 322 E +V + +HL ++ + IK + LLG+G+ Q +D L P Sbjct: 325 FEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPP 384 Query: 323 NTISSFKL-AGLLESAIR------------SSNAQYDDPDILDRLRVK------LMPHGT 363 ++ + +SA + +Y + D + + P Sbjct: 385 TAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDATQAREGPSRETSPREA 444 Query: 364 GDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALIGAWK-AMKPNCI 422 GW L Y + PL LFT +V+ +Y +F +L +RRV+ L W M+ + Sbjct: 445 PASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHL 504 Query: 423 TSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVSWSNFSNEMEXX 482 SN A+K + L + M V NLQYY+ +VLE +S +++ Sbjct: 505 KSNQTD----AIKWR----------LRNHMAFLVDNLQYYLQVDVLESQFSQLLHQINST 550 Query: 483 XXXXXXXXXHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLIL 524 H+ +L ++ +S + L K +F + IL Sbjct: 551 RDFESIRLAHDHFLSNLLAQSFI------LLKPVFHCLNEIL 586

PyMOL of 3rip

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		640
3rip_A		677	Gamma-tubulin complex component 4; helix bundles,	1e-100
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07

>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens} Length = 677	Back alignment and structure

 Score =  320 bits (820), Expect = e-100
 Identities = 122/709 (17%), Positives = 239/709 (33%), Gaps = 142/709 (20%)

Query: 3   DGYCLSDLVKVPRATRVMVRKLCELGWLFRKVRGYISESMDRFPAEDV-----------G 51
                 D   +  +   ++ +LC LG  + +   +I +       +D            G
Sbjct: 24  GLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQQQDHHPSQQGQGGLHG 83

Query: 52  TVGQAFCAALQDELLEYYKLLAVLEAQAMNPIPLVSESAGSGNYLSLRRLSVWFAEPMVK 111
              +AFC  L   L  Y + L  LE + +              +LS+  ++ +  +  + 
Sbjct: 84  IYLRAFCTGLDSVLQPYRQALLDLEQEFLGD-----------PHLSISHVNYFLDQFQLL 132

Query: 112 MRLMAVLVDKC--RVLRGGAMAGAIHLHAQHGDLLVHEFMKRLLRRVCSPLFEMVRSWVL 169
              + V+V++   + + G  +   ++ H+  G   V   ++++L      +++ + +W+L
Sbjct: 133 FPSVMVVVEQIKSQKIHGCQILETVYKHSCGGLPPVRSALEKILAVCHGVMYKQLSAWML 192

Query: 170 EGELEDIFAEFFVVGHPVKAE-------------------------------------SL 192
            G L D   EFF+   P                                         + 
Sbjct: 193 HGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDLGIGGLTGKQLRELQDLRLIEEENMLAP 252

Query: 193 WRDGYRLHSGMLPSFISQSLAQRILRTGKSINFLRVCCDDRGWADAATEAATA--AGTST 250
               + L   +LPS+I   +A++IL  G+S+        +     +  +      A    
Sbjct: 253 SLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQEDTFAAELH 312

Query: 251 RRGSLGYGETDALETLVIEAAKRIDKHLLDVIYKRYKFREHCLAIKRYLLLGQGDFVQYL 310
           R            E +V      + +HL  ++ +          IK + LLG+G+  Q  
Sbjct: 313 RLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAF 372

Query: 311 MDIVGPELSEPANTISSFKLAGLLESAIRSSNAQYDDPDILDRLRVKLM----------- 359
           +D     L  P   ++   +    + +        D+   L  L ++             
Sbjct: 373 IDTAQHMLKTPPTAVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHKDATQAR 432

Query: 360 --------PHGTGDRGWDVFSLEYDARVPLDTLFTESVMARYLKIFNFLWKLRRVEHALI 411
                   P      GW    L Y  + PL  LFT +V+ +Y  +F +L  +RRV+  L 
Sbjct: 433 EGPSRETSPREAPASGWAALGLSYKVQWPLHILFTPAVLEKYNVVFKYLLSVRRVQAELQ 492

Query: 412 GAWKAMKPNCITSNSFTKLQHAVKLQLLSTLRRCQVLWDEMNHFVTNLQYYIMFEVLEVS 471
             W                     L+   T      L + M   V NLQYY+  +VLE  
Sbjct: 493 HCWALQMQRK-------------HLKSNQTDAIKWRLRNHMAFLVDNLQYYLQVDVLESQ 539

Query: 472 WSNFSNEMEAAKDLDDLLAAHEKYLHSIFEKSLLGERSQSLFKSLFVLFDLILRFRSHAD 531
           +S   +++ + +D + +  AH+ +L ++  +S +    + +F  L  + DL   F S   
Sbjct: 540 FSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFI--LLKPVFHCLNEILDLCHSFCSLVS 597

Query: 532 RLYEGIRELQARTMESSLSSRDKKKSSRQTNDMHTKPGSWLSDGRKALTQRAGEFLRNME 591
           +                                              L +R    L  + 
Sbjct: 598 QNLG------------------------------------------PLDERGAAQLSILV 615

Query: 592 QELDATANEYTSLLEVFLAQLPVQQHVDLKFLLFRLDFTEFYTRLRPSV 640
           +       + + L ++  +    Q + DL  LL RLD+ ++YT+   ++
Sbjct: 616 KGFS---RQSSLLFKILSSVRNHQINSDLAQLLLRLDYNKYYTQAGGTL 661

PyMOL of 3rip

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00