Citrus Sinensis ID: 006558

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640

MGFLPENSRWVYEEIISNIRIRRVTEDDEVDDSEEKESEDSVDWESEFLGELDPFGYQAPKKRKKQEKSKVVDDNEGMDWCVRARKVALKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKKNKVTDDDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

ccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccEEEEEEEEcccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHcccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHccccc

ccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHccccccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHccccHHHccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHEEEHcHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEEcccEEEEEEcccccccccccccccHHHHHHHHHHHcccEEEEEcHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccc

mgflpensRWVYEEIISNIrirrvteddevddseekesedsvdweseflgeldpfgyqapkkrkkqekskvvddnegmdWCVRARKVALKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKknkvtdddldfdleddmkmddimgsgngydmndlRRTVSMMAGGMFEEKREKTIEEFVHRLsqfsgpsnrrkeinlnkdIVDAQTAQEVLEVIAEMITAVgkglspsplsplNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKvgefnsqnVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFAslyepadpllESLDNAFKDATQFTCCLNKALsncnenggvkssgdadsegslsspvlsfnrdqlgNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIAsagktkrfnQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKvafeidgpthfsrntgvplghTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDyiggegssnIAETLKMDAV

mgflpensrWVYEEiisnirirrvteddevddseekesedsvdweseflgeldpfgyqapkkrkkqekskvvddnegmdwCVRARKVALKsiearglassmedlikvkkkkkkgkkklekikkknkvtdddldfdleDDMKMDDImgsgngydmndLRRTVSMMAGGMFEEKREKTIEEFVHrlsqfsgpsnrrkeINLNKDIVDAQTAQEVLEVIAEMITAVGkglspsplSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASagktkrfnqkvtSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAfeidgpthfsrntgvplgHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYiggegssniaetlkmdav

MGFLPENSRWVYEEIISNIRIRRVTeddevddseekesedsvdweseFLGELDPFGYQAPkkrkkqekskVVDDNEGMDWCVRARKVALKSIEARGLASSMEDLIkvkkkkkkgkkklekikkknkVTdddldfdleddmkmddIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

********RWVYEEIISNIRIRRV*****************************************************MDWCVRARKVALKSI************************************************************************************************************KDIVDAQTAQEVLEVIAEMITAV*******************RIA****KVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNC**********************LSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAG***RFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGG***************

******NSRWVYEEIISNI***********************DWESEFLGEL**************************************************************************************DMKMDDIMGSGNGYDMNDLRRTVSM**************EEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYI***G***IA*TLKMD**

MGFLPENSRWVYEEIISNIRIRRV********************ESEFLGELDPFGYQ***************DNEGMDWCVRARKVALKSIEARGLASSMEDLIKV*************IKKKNKVTDDDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENG***************SPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

*GF*PENSRWVYEEIISNIRIR******************SVDWESEFLGELDPFGYQAPKK******SKVVDDNEGMDWCVRARKVALKSIEARGLASSMEDLIKVKKKKKK**KKLEKIKKK**************************GYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSS*****LK****

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MGFLPENSRWVYEEIISNIRIRRVTEDDEVDDSEEKESEDSVDWESEFLGELDPFGYQAPKKRKKQEKSKVVDDNEGMDWCVRARKVALKSIEARGLASSMEDxxxxxxxxxxxxxxxxxxxxxNKVTDDDLDFDLEDDMKMDDIMGSGNGYDMNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEGSSNIAETLKMDAV

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		640	2.2.26 [Sep-21-2011]
Q58CX2		660	FAST kinase domain-contai	yes	no	0.110	0.107	0.351	0.0001
Q6DJ55		633	Protein TBRG4 OS=Xenopus	no	no	0.418	0.423	0.234	0.0001
Q8BSN9		661	FAST kinase domain-contai	yes	no	0.110	0.107	0.337	0.0001

>sp\|Q58CX2\|FAKD3_BOVIN FAST kinase domain-containing protein 3 OS=Bos taurus GN=FASTKD3 PE=2 SV=2	Back alignment and function desciption

 Score = 48.9 bits (115), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 546 DGYTVDAVL---VDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEW 602
           DG+ +   +   V K+VA  IDGP  F  N+   LG    K+R++   G+ VV + + E 
Sbjct: 575 DGFVLPFTIDEDVHKRVALCIDGPKRFCLNSKHLLGKEATKQRHLRLLGYQVVQIPYYEI 634

Query: 603 EELQGSFEQLDYLR 616
           E L+   E +DYL+
Sbjct: 635 EMLKSRLELVDYLQ 648

Bos taurus (taxid: 9913)

>sp\|Q6DJ55\|TBRG4_XENTR Protein TBRG4 OS=Xenopus tropicalis GN=tbrg4 PE=2 SV=2	Back alignment and function description

>sp\|Q8BSN9\|FAKD3_MOUSE FAST kinase domain-containing protein 3 OS=Mus musculus GN=Fastkd3 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
225434251		656	PREDICTED: uncharacterized protein LOC10	0.932	0.910	0.750	0.0
147853193		676	hypothetical protein VITISV_042206 [Viti	0.932	0.883	0.726	0.0
224117838		663	predicted protein [Populus trichocarpa]	0.906	0.874	0.750	0.0
255585295		666	conserved hypothetical protein [Ricinus	0.914	0.878	0.753	0.0
356506291		664	PREDICTED: uncharacterized protein LOC10	0.910	0.878	0.713	0.0
356522646		669	PREDICTED: uncharacterized protein LOC10	0.914	0.874	0.716	0.0
449505631		633	PREDICTED: uncharacterized protein LOC10	0.926	0.936	0.684	0.0
449442355		671	PREDICTED: uncharacterized protein LOC10	0.926	0.883	0.684	0.0
4887747		627	hypothetical protein [Arabidopsis thalia	0.879	0.897	0.699	0.0
30685105		671	protein RAP [Arabidopsis thaliana] gi\|18	0.879	0.839	0.699	0.0

>gi\|225434251\|ref\|XP_002276208.1\| PREDICTED: uncharacterized protein LOC100257808 [Vitis vinifera]	Back alignment and taxonomy information

 Score =  898 bits (2320), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/606 (75%), Positives = 519/606 (85%), Gaps = 9/606 (1%)

Query: 30  VDDSEEKESEDSVDWESEFLGELDPFGYQAPKKRKKQEK-SKVVDDNEGMDWCVRARKVA 88
           VD ++++ESE  +DWE EFLGELDP G+QAPKKRKK+E+ SK+++D +GMDWCV+ARK+A
Sbjct: 56  VDSNDKQESE--MDWELEFLGELDPLGFQAPKKRKKREQGSKLLEDTDGMDWCVKARKMA 113

Query: 89  LKSIEARGLASSMEDLIKVKKKKKKGKKKLEKIKKKNKVTDDDLDFDLEDDMKMDDIMGS 148
           LKSIEARGL  +MEDLI VKKKK   KK  +K K   K    + + D ++D+++  +   
Sbjct: 114 LKSIEARGLTRTMEDLITVKKKKNNKKKLGKKDKISKKSKVSEEEDDSDEDIELKGV--- 170

Query: 149 GNGYDMND-LRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQ 207
            N  D  D LR+TVSM+AGGMFEEK+EKT++ FV RLSQFSGPS+RRKEINLNK IV+AQ
Sbjct: 171 -NPLDGADRLRKTVSMVAGGMFEEKKEKTMQAFVQRLSQFSGPSDRRKEINLNKAIVEAQ 229

Query: 208 TAQEVLEVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREM 267
           TA+EVLEV AE I AVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMT+ RLAF RQ+EM
Sbjct: 230 TAEEVLEVAAETIMAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTSRRLAFARQKEM 289

Query: 268 SMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVAN 327
           SMLV IAMTALPECSAQGISNI+WALSKIGGELLYLSEMDRVAEVALTKV +FNSQNVAN
Sbjct: 290 SMLVGIAMTALPECSAQGISNISWALSKIGGELLYLSEMDRVAEVALTKVEQFNSQNVAN 349

Query: 328 VAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAF 387
           VAGAFASM+HSAPDLFSEL++RAS+IVH FQEQELAQVLWAFASL EPA PLLESLDN F
Sbjct: 350 VAGAFASMRHSAPDLFSELSERASNIVHNFQEQELAQVLWAFASLNEPAGPLLESLDNVF 409

Query: 388 KDATQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQM 447
            D  QF CCL++     NE   V+++GD   E    SP L+F RDQLGNIAWSYAVLGQM
Sbjct: 410 NDENQFKCCLDQETLKYNEESVVENNGDLAMEEISGSPALNFKRDQLGNIAWSYAVLGQM 469

Query: 448 DRIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKI 507
           DR+FFS +WKT+S FEEQRISEQYREDIMFASQVHLVNQCLKLE+PHL+L+L S LEEK+
Sbjct: 470 DRVFFSHVWKTLSHFEEQRISEQYREDIMFASQVHLVNQCLKLEYPHLRLSLRSDLEEKV 529

Query: 508 ASAGKTKRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPT 567
           A AGKTKRFNQK+TSSFQKEVA LLVSTGL+W+REY VDGYT+DAVLVD+KVA EIDGPT
Sbjct: 530 ARAGKTKRFNQKMTSSFQKEVAHLLVSTGLDWVREYVVDGYTLDAVLVDQKVALEIDGPT 589

Query: 568 HFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVILKDYIGGEG 627
           HFSRN+GVPLGHTMLKRRYI AAGW + S+SHQEWEELQG FEQLDYLR ILKD+I GEG
Sbjct: 590 HFSRNSGVPLGHTMLKRRYITAAGWKLASVSHQEWEELQGGFEQLDYLREILKDHI-GEG 648

Query: 628 SSNIAE 633
           S+NI +
Sbjct: 649 SANIVQ 654

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|147853193\|emb\|CAN78554.1\| hypothetical protein VITISV_042206 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117838\|ref\|XP_002331644.1\| predicted protein [Populus trichocarpa] gi\|222874040\|gb\|EEF11171.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255585295\|ref\|XP_002533346.1\| conserved hypothetical protein [Ricinus communis] gi\|223526811\|gb\|EEF29031.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356506291\|ref\|XP_003521919.1\| PREDICTED: uncharacterized protein LOC100805208 [Glycine max]	Back alignment and taxonomy information

>gi\|356522646\|ref\|XP_003529957.1\| PREDICTED: uncharacterized protein LOC100794144 [Glycine max]	Back alignment and taxonomy information

>gi\|449505631\|ref\|XP_004162527.1\| PREDICTED: uncharacterized protein LOC101223645 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449442355\|ref\|XP_004138947.1\| PREDICTED: uncharacterized protein LOC101211080 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|4887747\|gb\|AAD32283.1\| hypothetical protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|30685105\|ref\|NP_850176.1\| protein RAP [Arabidopsis thaliana] gi\|18086393\|gb\|AAL57655.1\| At2g31890/F20M17.7 [Arabidopsis thaliana] gi\|22136584\|gb\|AAM91078.1\| At2g31890/F20M17.7 [Arabidopsis thaliana] gi\|330253506\|gb\|AEC08600.1\| protein RAP [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		640
TAIR\|locus:2045213		671	RAP "AT2G31890" [Arabidopsis t	0.720	0.687	0.755	8.2e-201
GENEDB_PFALCIPARUM\|PF10_0240		433	PF10_0240 "hypothetical protei	0.256	0.378	0.271	1.1e-07
UNIPROTKB\|Q8IJF8		433	PF10_0240 "Conserved Plasmodiu	0.256	0.378	0.271	1.1e-07
GENEDB_PFALCIPARUM\|PFE0905w		1379	PFE0905w "hypothetical protein	0.387	0.179	0.197	1.4e-07
UNIPROTKB\|Q8I3S7		1379	PFE0905w "RAP protein, putativ	0.387	0.179	0.197	1.4e-07
UNIPROTKB\|H9GW76		631	TBRG4 "Uncharacterized protein	0.107	0.109	0.323	5e-05

TAIR\|locus:2045213 RAP "AT2G31890" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1796 (637.3 bits), Expect = 8.2e-201, Sum P(2) = 8.2e-201
 Identities = 352/466 (75%), Positives = 403/466 (86%)

Query:   154 MNDLRRTVSMMAGGMFEEKREKTIEEFVHRLSQFSGPSNRRKEINLNKDIVDAQTAQEVL 213
             M DLR+ VS +AGGMFEEK+EK  E+   RLSQFSGPS+R KEINLNK I++AQTA+EVL
Sbjct:   207 MGDLRKRVSSLAGGMFEEKKEKMKEQLAQRLSQFSGPSDRMKEINLNKAIIEAQTAEEVL 266

Query:   214 EVIAEMITAVGKGLSPSPLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAI 273
             EV AE I AV KGLSPSPLSPLNIATALHRIAKNMEKVSMM T RLAF RQREMSMLVA+
Sbjct:   267 EVTAETIMAVAKGLSPSPLSPLNIATALHRIAKNMEKVSMMRTRRLAFARQREMSMLVAL 326

Query:   274 AMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVAEVALTKVGEFNSQNVANVAGAFA 333
             AMT LPECSAQGISNI+WALSKIGGELLYL+EMDRVAEVA +KVGEFNSQNVAN+AGAFA
Sbjct:   327 AMTCLPECSAQGISNISWALSKIGGELLYLTEMDRVAEVATSKVGEFNSQNVANIAGAFA 386

Query:   334 SMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDATQF 393
             SM+HSAP+LF+EL+KRAS I++TF+ QE+AQ+LW+FASLYEPADPLLESLD+AFK + QF
Sbjct:   387 SMRHSAPELFAELSKRASTIINTFKGQEIAQLLWSFASLYEPADPLLESLDSAFKSSDQF 446

Query:   394 TCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFS 453
              C L K ++N +E    + S D        SP LSFNRDQLGNIAWSYAVLGQ++R FF+
Sbjct:   447 KCYLTKEITNSDEVVDAEVSDDVSR-----SPALSFNRDQLGNIAWSYAVLGQVERPFFA 501

Query:   454 DIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKT 513
             +IW T++  EEQR+SEQYRED+MFASQV+LVNQCLKLE PHLQL+L   LEEKI+ AGKT
Sbjct:   502 NIWNTLTTLEEQRLSEQYREDVMFASQVYLVNQCLKLECPHLQLSLCQELEEKISRAGKT 561

Query:   514 KRFNQKVTSSFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNT 573
             KRFNQK+TSSFQKEV RLL+STGL+W +E+ VDGYTVD  LV+KKVA EIDGPTHFSRN+
Sbjct:   562 KRFNQKITSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALVEKKVALEIDGPTHFSRNS 621

Query:   574 GVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLRVIL 619
             G+PLGHTMLKRRY+AAAGW VVSLS QEWEE +GS EQL+YLR IL
Sbjct:   622 GLPLGHTMLKRRYVAAAGWKVVSLSLQEWEEHEGSHEQLEYLREIL 667

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GENEDB_PFALCIPARUM\|PF10_0240 PF10_0240 "hypothetical protein" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IJF8 PF10_0240 "Conserved Plasmodium protein" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PFE0905w PFE0905w "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8I3S7 PFE0905w "RAP protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

UNIPROTKB\|H9GW76 TBRG4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034773001	SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (629 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		640
pfam08373		57	pfam08373, RAP, RAP domain	4e-16
smart00952		58	smart00952, RAP, This domain is found in various e	1e-13

>gnl\|CDD\|219811 pfam08373, RAP, RAP domain	Back alignment and domain information

 Score = 72.6 bits (179), Expect = 4e-16
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 561 FEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGSFEQLDYLR 616
            E+DGP+HF RN+    G T LK R ++A G+ V+ + + EW +L    ++++YL+
Sbjct: 1   IEVDGPSHFYRNSKNLTGKTKLKHRILSALGYKVIHIPYYEWNQL-TDEQKVEYLK 55

This domain is found in various eukaryotic species, where it is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain. The domain is involved in plant defence in response to bacterial infection. Length = 57

>gnl\|CDD\|214932 smart00952, RAP, This domain is found in various eukaryotic species, particularly in apicomplexans	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		640
PTZ00479		435	RAP Superfamily; Provisional	100.0
PF08373		58	RAP: RAP domain; InterPro: IPR013584 The ~60-resid	99.75
PRK09169		2316	hypothetical protein; Validated	99.66
PRK09169		2316	hypothetical protein; Validated	99.66
PTZ00479		435	RAP Superfamily; Provisional	99.44
PF04480		108	DUF559: Protein of unknown function (DUF559); Inte	98.7
cd01038		108	Endonuclease_DUF559 Domain of unknown function, ap	98.66
PRK14707		2710	hypothetical protein; Provisional	98.65
PRK14707		2710	hypothetical protein; Provisional	98.61
PRK09767		117	hypothetical protein; Provisional	98.48
cd00221		115	Vsr Very Short Patch Repair (Vsr) Endonuclease. En	98.35
COG2852		129	Very-short-patch-repair endonuclease [Replication,	98.19
PF06743		71	FAST_1: FAST kinase-like protein, subdomain 1; Int	98.04
TIGR00632		117	vsr DNA mismatch endonuclease Vsr. All proteins in	98.02
PF06743		71	FAST_1: FAST kinase-like protein, subdomain 1; Int	97.89
cd01037		80	Restriction_endonuclease_like Superfamily of nucle	96.49
PF08368		93	FAST_2: FAST kinase-like protein, subdomain 2; Int	96.27
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	93.21
PF10881		126	DUF2726: Protein of unknown function (DUF2726); In	93.06
COG3727		150	Vsr DNA G:T-mismatch repair endonuclease [DNA repl	92.88
PF07671		37	DUF1601: Protein of unknown function (DUF1601); In	91.85
PF03852		75	Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR0	87.92
PF07671		37	DUF1601: Protein of unknown function (DUF1601); In	87.56

>PTZ00479 RAP Superfamily; Provisional	Back alignment and domain information

Probab=100.00  E-value=3.1e-40  Score=348.63  Aligned_cols=339  Identities=16%  Similarity=0.189  Sum_probs=259.7

Q ss_pred             CCChhhHHHHHHHHHhccccchhhhhhhhhhhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhCCCcCCHHHHHHHH
Q 006558          231 PLSPLNIATALHRIAKNMEKVSMMTTHRLAFTRQREMSMLVAIAMTALPECSAQGISNIAWALSKIGGELLYLSEMDRVA  310 (640)
Q Consensus       231 ~fn~vn~aTALhRLAk~~~~~~~~~~rr~~~ar~~~~~~L~~~a~~~l~~~~pq~LsnilWAlAkLg~~~~~~~el~aLa  310 (640)
                      -+++.-+|.+...-|.+-..            .-.........+...++.++||+|++|+|+|||+++.+.  ..+.++.
T Consensus        57 ~md~~~is~~vqkaat~rkh------------D~~Lw~~f~~Rilel~dtL~Pqqig~Ilyg~gKsr~~~~--efy~~~~  122 (435)
T PTZ00479         57 LMDGWYLSACVQKAATLRKH------------DLELWHGFTNRLLELSDTLTPQQIGYIFYGYGKSRFLNP--EFYEKML  122 (435)
T ss_pred             hcCHHHHHHHHHHHHhhhhc------------hHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhccCH--HHHHHHH
Confidence            45555566555555543111            123566777788888999999999999999999998643  2468888


Q ss_pred             HHHHhhhCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHhCCCCChhHHHHHHHHhhhc
Q 006558          311 EVALTKVGEFNSQNVANVAGAFASMQHSAPDLFSELAKRASDIVHTFQEQELAQVLWAFASLYEPADPLLESLDNAFKDA  390 (640)
Q Consensus       311 ~~a~~~i~~fspQ~LAnilwAlAkL~~~~~~L~~aLa~~v~~~l~~f~~QeLsniLWAfA~L~~~~~~Ll~aL~~~~~~~  390 (640)
                      +.+...+++|++++|++++|||++|+++++.|+.+++.++..+.++|.++++++++.|||+|++.+..+.+.+...+.  
T Consensus       123 ~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~~~ak~vl~r~~~~r~~dl~k~~nslakLg~~~~~l~k~l~~~~~--  200 (435)
T PTZ00479        123 KFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVGEKFDDIRTTDLIKICNSLAKLGGYTNNLKKFLSEKMV--  200 (435)
T ss_pred             HHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccccCchhHHHHHHHHHHhcCCcHHHHHHHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999998877766554332  


Q ss_pred             chhHHHHHHHhhhcccCCCCCCCCCccchhhhcccCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHhhhHH
Q 006558          391 TQFTCCLNKALSNCNENGGVKSSGDADSEGSLSSPVLSFNRDQLGNIAWSYAVLGQMDRIFFSDIWKTISRFEEQRISEQ  470 (640)
Q Consensus       391 ~~f~~~L~~lvs~~~~~~~~~~~~~Ld~~~~~~~~l~~F~pqeLaniLWSLAvLg~~d~~lf~~L~~~L~~~~~~~ls~~  470 (640)
                                                       ..++.|+++++-|.+=..+.++.++.+.-..++..   +..-.+ -.
T Consensus       201 ---------------------------------~rle~~~~~~~r~~i~~it~~~Lf~d~m~~~~ler---~s~~~~-c~  243 (435)
T PTZ00479        201 ---------------------------------EKLESLFAQDFRNVVNDVTLIHLYDDNTQIYILER---FSKMFI-CA  243 (435)
T ss_pred             ---------------------------------HHHhhhcccchhhhcChhhHHHHhhhHHHHHHHHH---ccccce-ec
Confidence                                             23456677777777777777777776643333322   111000 00


Q ss_pred             HHHhhHHHHHHHHHHHHhhhhCCccccccchHHHHHHHHhcccccc-CCCCCCHHHHHHHHHHHhcCCCceeeeeeccee
Q 006558          471 YREDIMFASQVHLVNQCLKLEHPHLQLALSSVLEEKIASAGKTKRF-NQKVTSSFQKEVARLLVSTGLNWIREYAVDGYT  549 (640)
Q Consensus       471 ~~~dlm~~~QL~~~~~~l~lE~P~~~l~l~~~L~~~l~~a~~~~~~-~~~~~S~lq~eV~~~L~~lG~~~~~E~~~~G~~  549 (640)
                      |...   ..|+|.....+.+.+|+....++......+.+......- ....+|.+|++|+++|..||+.|+.|+..+||.
T Consensus       244 r~~h---l~~~y~~aly~rl~~p~v~~~Ls~~~r~Fl~r~s~r~i~~~~~~~S~~h~dVS~~L~~mGI~H~ne~~~Gpf~  320 (435)
T PTZ00479        244 RPQH---LQQAYKSAVAVRVLLPHVWFQLSKSVKSFYTRLSMRRIPQSLRKPSPFQWDVSNCLAKLGISHRNTFYWGCFW  320 (435)
T ss_pred             ccHH---HHHHHhhhhhheeechHHHHhcCHHHHHHHHHHhhccccccCCCCcHHHHHHHHHHHHhCCchhhheeecCeE
Confidence            1111   113333334566778887666777666666655321111 125799999999999999999999999999999


Q ss_pred             eeeecC-CccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEEEchhHHhhhCCh-HHHHHHHHHHHHHHhhc
Q 006558          550 VDAVLV-DKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWEELQGS-FEQLDYLRVILKDYIGG  625 (640)
Q Consensus       550 VDi~l~-~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~VPy~EW~~L~~~-~er~~YLr~kL~~~l~~  625 (640)
                      |||+.+ +++++||||||+||++|+...+|.+.+|+|+|..+||+|++|||+||.+|.++ ++|++||++.+...-.+
T Consensus       321 iDI~~~~~k~~~IeVdGPshFY~ns~~~Ta~skLkHriL~~lGw~V~~Ipy~eW~~L~~d~e~K~eYLrk~~e~~~~~  398 (435)
T PTZ00479        321 IDIGEIDDKRNCWFIDGPSCFYTSTNEYTESVKLQHRILSNLGWNIRRVVWIDWVQLGDDTEAKVQYVRKLRESEPLG  398 (435)
T ss_pred             EEEeccCCcceEEEEcCcchhhccchhhHHHHHHHHHHHHHCCCeEEEeeHHHHhhhCcCHHHHHHHHHHHhhcCCCC
Confidence            999965 67899999999999999999999999999999999999999999999999876 68999999999865433

>PF08373 RAP: RAP domain; InterPro: IPR013584 The ~60-residue RAP (an acronym for RNA-binding domain abundant in Apicomplexans) domain is found in various proteins in eukaryotes	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PRK09169 hypothetical protein; Validated	Back alignment and domain information

>PTZ00479 RAP Superfamily; Provisional	Back alignment and domain information

>PF04480 DUF559: Protein of unknown function (DUF559); InterPro: IPR007569 This entry represents a protein of unknown function, but is thought to be a DNA mismatch repair endonuclease	Back alignment and domain information

>cd01038 Endonuclease_DUF559 Domain of unknown function, appears to be related to a diverse group of endonucleases	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PRK14707 hypothetical protein; Provisional	Back alignment and domain information

>PRK09767 hypothetical protein; Provisional	Back alignment and domain information

>cd00221 Vsr Very Short Patch Repair (Vsr) Endonuclease	Back alignment and domain information

>COG2852 Very-short-patch-repair endonuclease [Replication, recombination, and repair]	Back alignment and domain information

>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues	Back alignment and domain information

>TIGR00632 vsr DNA mismatch endonuclease Vsr	Back alignment and domain information

>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues	Back alignment and domain information

>cd01037 Restriction_endonuclease_like Superfamily of nucleases including Short Patch Repair (Vsr) Endonucleases, archaeal Holliday junction resolvases, MutH methy-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI	Back alignment and domain information

>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function	Back alignment and domain information

>COG3727 Vsr DNA G:T-mismatch repair endonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PF07671 DUF1601: Protein of unknown function (DUF1601); InterPro: IPR011632 This repeat is found in a small number of proteins and is apparently limited to Coxiella burnetii	Back alignment and domain information

>PF03852 Vsr: DNA mismatch endonuclease Vsr; InterPro: IPR004603 This entry represents VSR (very short patch repair) endonucleases, which occur in a variety of bacteria	Back alignment and domain information

>PF07671 DUF1601: Protein of unknown function (DUF1601); InterPro: IPR011632 This repeat is found in a small number of proteins and is apparently limited to Coxiella burnetii	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		640
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 56/373 (15%), Positives = 106/373 (28%), Gaps = 122/373 (32%)

Query: 342 LFSELAKRASDIVHTFQEQELAQ-VLWAFASL-YEPADPLL------ESLDNAFKDATQF 393
           LF  L  +  ++V  F E+ L     +  + +  E   P +      E  D  + D   F
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 394 T----------CCLNKALSNCNENGGVKSSGDADSEGS----LSSPVLSFNRDQLGNIAW 439
                        L +AL        V   G     GS    ++  V             
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSGKTWVALDVCL----------- 172

Query: 440 SYAVLGQMD-RIFFSDIWKTISRFEEQRISEQYREDIMFASQVHLVNQCLKLEHPHLQLA 498
           SY V  +MD +IF    W  +             E ++      L     +++      +
Sbjct: 173 SYKVQCKMDFKIF----WLNLKNCNSP-------ETVL----EMLQKLLYQIDPNWTSRS 217

Query: 499 LSSV--------LEEKIASAGKTKRF-----------NQKVTSSFQKEVARLLVSTGLNW 539
             S         ++ ++    K+K +           N K  ++F     ++L++T    
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQ 276

Query: 540 IREYAVDGYTVDAVLVDKKVAFEID-GPTHFSRNTGV-------------PLGHTMLKRR 585
           + ++     T    L    +    D   +   +                 P   ++    
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI---- 332

Query: 586 YIAA------AGWNV--------------VSLSHQEWEELQGSFEQLDYLRVILKDYIGG 625
            IA       A W+                SL+  E  E +  F++L     +       
Sbjct: 333 -IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL----SVFPP---- 383

Query: 626 EGSSNI-AETLKM 637
             S++I    L +
Sbjct: 384 --SAHIPTILLSL 394

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		640
3hrl_A		104	Endonuclease-like protein; structural genomics, PS	98.83
3r3p_A		105	MobIle intron protein; homing endonuclease, hydrol	98.67
1vsr_A		136	Protein (VSR endonuclease); DNA repair, mismatch r	98.2
1cw0_A		155	Protein (DNA mismatch endonuclease); protein-DNA c	98.14
1m0d_A		138	Endonuclease, endodeoxyribonuclease I; holliday ju	83.32

>3hrl_A Endonuclease-like protein; structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Neisseria gonorrhoeae fa 1090}	Back alignment and structure

Probab=98.83  E-value=2.3e-08  Score=88.28  Aligned_cols=94  Identities=21%  Similarity=0.303  Sum_probs=70.0

Q ss_pred             CCCHHHHHHHHHHHh---cCCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCCCCcchhHHHHHHHHHcCCEEEE
Q 006558          520 VTSSFQKEVARLLVS---TGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTGVPLGHTMLKRRYIAAAGWNVVS  596 (640)
Q Consensus       520 ~~S~lq~eV~~~L~~---lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~~~lG~t~LK~RlL~~~Gw~VV~  596 (640)
                      ..|..-..+-..|..   .|+.+...+.+++|.+|+++++.++||||||.+|....     .....|.+.|+.+||+|+.
T Consensus         3 ~~T~~E~~l~~~Lr~~~~~G~~fr~q~~i~~~~~Df~~~~~rl~IE~DG~~H~~~~-----~~D~~R~~~L~~~Gw~VlR   77 (104)
T 3hrl_A            3 AMSEAEAKLWQHLRAGRLNGYKFRRQQPMGNYIVDFMCVTPKLIVEADGGQHAEQA-----VYDHARTVYLNSLGFTVLR   77 (104)
T ss_dssp             CCCHHHHHHHHHHGGGTTTTCCEEEEEEETTEEEEEEETTTTEEEEEEC------------CCCHHHHHHHHHTTCEEEE
T ss_pred             CCCHHHHHHHHHHHhCCCCCcEEEeecccCCcEEeEEecCCCEEEEEECcccCChH-----HHHHHHHHHHHhCcCEEEE
Confidence            356667778888888   68888899999999999999999999999998887532     4599999999999999999


Q ss_pred             EchhHHhhhCChHHHHHHHHHHHH
Q 006558          597 LSHQEWEELQGSFEQLDYLRVILK  620 (640)
Q Consensus       597 VPy~EW~~L~~~~er~~YLr~kL~  620 (640)
                      +.+.++.  ...+.-++-+++.|.
T Consensus        78 ~~~~dv~--~~~~~v~~~I~~~l~   99 (104)
T 3hrl_A           78 FWNHEIL--QQTNDVLAEILRVLQ   99 (104)
T ss_dssp             EEHHHHH--HCHHHHHHHHHHHHH
T ss_pred             EEHHHHh--hCHHHHHHHHHHHHh
Confidence            9988864  223334444444443

PyMOL of 3hrl

>3r3p_A MobIle intron protein; homing endonuclease, hydrolase; 2.20A {Bacillus phage 0305phi8-36}	Back alignment and structure

>1vsr_A Protein (VSR endonuclease); DNA repair, mismatch recognition, hydrolase; 1.80A {Escherichia coli} SCOP: c.52.1.15 PDB: 1odg_A*	Back alignment and structure

>1cw0_A Protein (DNA mismatch endonuclease); protein-DNA complex, intercalation, zinc, hydrolase/DNA; HET: DNA; 2.30A {Escherichia coli} SCOP: c.52.1.15	Back alignment and structure

>1m0d_A Endonuclease, endodeoxyribonuclease I; holliday junction resolvase, homodimer, domain swapped, composite active site, hydrolase; 1.90A {Enterobacteria phage T7} SCOP: c.52.1.17 PDB: 1m0i_A 2pfj_A 1fzr_A 3cae_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		640
d1vsra_		134	c.52.1.15 (A:) Very short patch repair (VSR) endon	0.001

>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]} Length = 134	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Very short patch repair (VSR) endonuclease
domain: Very short patch repair (VSR) endonuclease
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 32/135 (23%)

Query: 523 SFQKEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTH-------------- 568
           + +K +A LL   GL +  + A      D V+ + +      G                 
Sbjct: 1   AIEKRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATR 60

Query: 569 -------FSRNTGVPLGHTMLKRRYIAAAGWNVVSLSHQEWE-ELQGSFE-QLDYLRVIL 619
                    +N              +   GW V+ +    WE  L+G  +   + L   L
Sbjct: 61  TEFWLEKIGKNV----ERDRRDISRLQELGWRVLIV----WECALRGREKLTDEALTERL 112

Query: 620 KDYI-GGEGSSNIAE 633
           +++I G   S+ I  
Sbjct: 113 EEWICGEGASAQIDT 127

PyMOL of d1vsra_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		640
d1vsra_		134	Very short patch repair (VSR) endonuclease {Escher	97.89

>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Restriction endonuclease-like
superfamily: Restriction endonuclease-like
family: Very short patch repair (VSR) endonuclease
domain: Very short patch repair (VSR) endonuclease
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=2.1e-05  Score=69.83  Aligned_cols=97  Identities=22%  Similarity=0.217  Sum_probs=67.8

Q ss_pred             HHHHHHHHhcCCCceeeeeecceeeeeecCCccEEEEEcCCCCCccCCC---CCc--------------chhHHHHHHHH
Q 006558          526 KEVARLLVSTGLNWIREYAVDGYTVDAVLVDKKVAFEIDGPTHFSRNTG---VPL--------------GHTMLKRRYIA  588 (640)
Q Consensus       526 ~eV~~~L~~lG~~~~~E~~~~G~~VDi~l~~~rVAIEVDGP~Hf~~ns~---~~l--------------G~t~LK~RlL~  588 (640)
                      ..|.+.|..+|+.++.....-+...||++|..|+||+|||..+...+..   .|-              -...-..+.|+
T Consensus         4 ~~lr~~L~~~G~RyR~~~k~lpG~PDiv~~~~k~aIfvdGcFWH~h~c~~~~~Pktn~efW~~Ki~~N~~RD~~~~~~L~   83 (134)
T d1vsra_           4 KRLASLLTGQGLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDISRLQ   83 (134)
T ss_dssp             HHHHHHHHHTTCCCEESCTTSTTCCSEEEGGGTEEEEEECTTTTTCSSTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCeEEecCCCCCCCCCEeecCccEEEEEcCccccCCCccccCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577889999999888766556788999999999999999885443321   121              25667788999


Q ss_pred             HcCCEEEEEchhHHhhhCChH-HHHHHHHHHHHHHhhc
Q 006558          589 AAGWNVVSLSHQEWEELQGSF-EQLDYLRVILKDYIGG  625 (640)
Q Consensus       589 ~~Gw~VV~VPy~EW~~L~~~~-er~~YLr~kL~~~l~~  625 (640)
                      .+||+|+.|--.|   +.+.. -..+.+.+.|...|.+
T Consensus        84 ~~GW~vl~iWEce---lk~~~~~~~e~i~~~L~~~l~~  118 (134)
T d1vsra_          84 ELGWRVLIVWECA---LRGREKLTDEALTERLEEWICG  118 (134)
T ss_dssp             HTTCEEEEEEHHH---HSSTTCCCHHHHHHHHHHHHHT
T ss_pred             HCCCEEEEEecCc---cCCcccccHHHHHHHHHHHHhC
Confidence            9999999994333   32211 1245555666655544

PyMOL of d1vsra_