Citrus Sinensis ID: 006562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640
Protein Sequence
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccHHHHHHcHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHccccHHHcHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccccHHHHHcccHHHHccccccHHHHHHcHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccEEEccccccccccHHHHHcccccccEcccccccHHHHHHHcccccccHHccccHHcccccccccHHcHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHcc
Coil and Loop (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGcafsalgrkEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKqdrsvtceydvsnsmssltvsesglnandkmsetsenhnksdicdsssqsrdvsetcsksshdpdlcngrsdeakggssvpvsksglhingklrevsenhngssdgsksthasrdaseinrqssddfdicngpidkasvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQilkedpmypealigRGTARAFQRELEAAISDFTEAiqsnpsagEAWKRRGQARAALGESVEAIQDLSKalefepnsadilhergivnfkfkdFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDlssglgidpsnieCLYLRASCYHAIGEYREAVI
Flexible Loop (DISEMBL)
mlkrklldsryrlnkthkticeidelvrvDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETsenhnksdicdsssqsrDVSEtcsksshdpdlcngrsdeakggssvpvsksgLHINGKLrevsenhngssdgsksthasrdaseinrqssddfdicNGPIDKAsvnerhgrqtngthdvhdklssdsaslndsntnsesyskssisdnkssdstesrsklsfkWDMLKetsneakrnkkfcvtrisksksisvdfrlsrgiaqvnegkyASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Low Complexity Region (SEG)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAkggssvpvsksgLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKlssdsaslndsntnsesyskssisdnkssdstesrsklsFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYhlrglllhglgqhKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Disordered region (IsUnstruct)
*********RYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ**SVTCE************************************************************************************************************************************************************************************************************KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF*************************************LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR****
Disordered Region (DISOPRED)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Disordered Region (DISEMBL)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNAN*************************************LCNGRS**********VSKSGLHINGKLREVS***********************RQSSDDFDICNGPIDKASVNER**************************************************KLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS******************GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Disordered Region (DISPRO)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLKRKLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	640	2.2.26 [Sep-21-2011]
Q8NBP0	860	Tetratricopeptide repeat	yes	no	0.385	0.287	0.296	1e-27
Q8RVB2	931	Probable UDP-N-acetylgluc	N/A	no	0.354	0.243	0.243	2e-11
O82039	932	Probable UDP-N-acetylgluc	N/A	no	0.340	0.233	0.248	2e-10
Q9M8Y0	977	Probable UDP-N-acetylgluc	no	no	0.317	0.207	0.247	3e-10
Q68FQ7	659	RNA polymerase II-associa	no	no	0.367	0.356	0.276	6e-10
Q58741	314	TPR repeat-containing pro	yes	no	0.284	0.579	0.268	1e-09
Q5ZKQ3	665	RNA polymerase II-associa	no	no	0.368	0.354	0.252	2e-09
Q96301	914	Probable UDP-N-acetylgluc	no	no	0.340	0.238	0.248	3e-09
Q54VG4	334	Small glutamine-rich tetr	no	no	0.181	0.347	0.316	3e-09
Q9H6T3	665	RNA polymerase II-associa	no	no	0.367	0.353	0.26	5e-09

>sp|Q8NBP0|TTC13_HUMAN Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 134/253 (52%), Gaps = 6/253 (2%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQSNP 446
           +  G Y  AI  F  +L+E+P    A+ GRG A   +     +  E A+ + +  I   P
Sbjct: 154 IGSGLYDEAIRHFSTMLQEEPDLVSAIYGRGIAYGKKGLHDIKNAELALFELSRVITLEP 213

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+  A ED 
Sbjct: 214 DRPEVFEQRAEILSPLGRINEAVNDLTKAIQLQP-SARLYRHRGTLYFISEDYATAHEDF 272

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++L+K    A  Y GL     G  K+A E+  +A++   +F++A+  L Q Y++L N
Sbjct: 273 QQSLELNKNQPIAMLYKGLTFFHRGLLKEAIESFKEALKQKVDFIDAYKSLGQAYRELGN 332

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            E A E  Q+ L +++   +   LRG++L+  G  ++A+K+    L ++P N  C Y++ 
Sbjct: 333 FEAATESFQKALLLNQNHVQTLQLRGMMLYHHGSLQEALKNFKRCLQLEPYNEVCQYMKG 392

Query: 627 SCYHAIGEYREAV 639
             + A+G++ E +
Sbjct: 393 LSHVAMGQFYEGI 405

Homo sapiens (taxid: 9606)

>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Solanum lycopersicum GN=SPY PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 106/242 (43%), Gaps = 15/242 (6%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F+EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLEKDSKSIESLIGKGICLQMQNTGRLAFESFSEAIKVDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   +++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+          Y +A C
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA--------YYKKALC 294

Query: 629 YH 630
           Y+
Sbjct: 295 YN 296

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Solanum lycopersicum (taxid: 4081)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Petunia hybrida GN=SPY PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 7/225 (3%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+  A++I++ +L++D    E+LIG+G     Q     A   F EAI+ +P    A    
Sbjct: 63  KFVDALAIYESVLQKDSGSIESLIGKGICLQMQNMGRLAFESFAEAIKLDPQNACALTHC 122

Query: 456 GQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL+ +P+        A +L + G       +    ++    
Sbjct: 123 GILYKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYE 182

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 183 AIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLE 242

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+ 
Sbjct: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVA 287

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins.

Petunia hybrida (taxid: 4102)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1

 Score = 67.4 bits (163), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 85/210 (40%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +L  A+  + EA++  P+  +A+   G    ALG   EAI     AL+  PNSA      
Sbjct: 238 DLNRALQYYKEAVKLKPAFPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNI 297

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             + ++    + A+      +  D     AY  LG AL  IG   +A   + + + L  N
Sbjct: 298 ASIYYEQGQLDLAIRHYKQALSRDPRFLEAYNNLGNALKDIGRVDEAVRCYNQCLALQPN 357

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             +A  +L   Y +      A    +  L +    S  ++   ++    G +  AI   +
Sbjct: 358 HPQAMANLGNIYMEWNMMGPASSLFKATLAVTTGLSAPFNNLAIIYKQQGNYSDAISCYN 417

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAV 639
             L IDP   + L  R + Y  IG   EA+
Sbjct: 418 EVLRIDPLAADALVNRGNTYKEIGRVTEAI 447

O-linked N-acetylglucosamine transferase (OGT) that mediates O-glycosylation of capsid protein (CP) of virus in case of infection by Plum pox virus. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Its OGT activity has been proved in vitro but not in vivo. Required with SPY for gamete and seed development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q68FQ7|RPAP3_RAT RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 114/250 (45%), Gaps = 15/250 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   AI  + 
Sbjct: 139 KGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  +A +D  K LE EP++ +  +E R I        N+  +D
Sbjct: 199 SYTKAYARRGAARFALQKLEDARKDYVKVLELEPDNFEATNELRKIDQALTSKENSHPKD 258

Query: 506 LSACVK-LDKENKS-----------AYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLE 552
           ++A +K  + E K+           A   LG      G+Y++A E + + I  D  N L 
Sbjct: 259 IAAVIKPAEGERKANEDQRGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
                  + +     E   +C Q +L +D  +SKA+  RG     LG+  +A +D  + L
Sbjct: 319 PANRAMAYLKVQKYEEAERDCTQAIL-LDGSYSKAFARRGTARTFLGKINEAKQDFETVL 377

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 378 LLEPGNKQAV 387

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Rattus norvegicus (taxid: 10116)

>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 90/186 (48%), Gaps = 4/186 (2%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G+Y  A+ I D+ILK+ P    A   +G     + +L+ ++  F  A++ NP   ++   
Sbjct: 127 GEYDYALKIIDKILKKYPKSAIAWAEKGEILYREGKLKKSLECFDNALKINPKDCQSLLY 186

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF--KFKDFNAAVEDLSACVKL 512
           +G+    LG   EA++ L K   FE N+ DI     I+         N A+E     +KL
Sbjct: 187 KGEILFKLGRYGEALKCLKKV--FERNNKDIRALMYIIQILIYLGRLNQALEYTKKALKL 244

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           + ++   Y Y G+ L+ +G+Y +A +   K ++++ N  +AW       + L    +A+E
Sbjct: 245 NPDDPLLYLYKGIILNKLGKYNEAIKYFDKVLEINPNIPDAWNGKAIALEKLGKINEAIE 304

Query: 573 CLQQVL 578
           C  + L
Sbjct: 305 CYNRAL 310

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q5ZKQ3|RPAP3_CHICK RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/250 (25%), Positives = 109/250 (43%), Gaps = 14/250 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G +  AI  + + +  DP  P     R +A    ++   A SD   A+  + 
Sbjct: 139 KGNKYFKQGNFDEAIKCYTRGMHSDPFNPVLPTNRASAFYRMKKFSVAESDCNLALALDK 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-------KDF 499
           +  +A+ RRG AR AL     A +D  K LE + N+ +  +E   +           K+F
Sbjct: 199 NYTKAYARRGAARFALKNFQGAKEDYEKVLELDANNYEAKNELKKIEQALSSESSEQKEF 258

Query: 500 NAAV-----EDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
             AV     E+   C++ ++  + A T   LG      G+Y+ A E + + I  D     
Sbjct: 259 EEAVRSELTENERRCIEEEQLKQKAVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNAL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
              +    Y  +   E+A     Q L +D  +SKA+  RG     LG+ K+A++D  + L
Sbjct: 319 LPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVL 378

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 379 KLEPGNKQAI 388

May for an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein.

Gallus gallus (taxid: 9031)

>sp|Q96301|SPY_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY OS=Arabidopsis thaliana GN=SPY PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 101/225 (44%), Gaps = 7/225 (3%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           K+A A+++++ +L++D    EA IG+G     Q +   A   F+EAI+ +P    A    
Sbjct: 58  KFADALALYEAMLEKDSKNVEAHIGKGICLQTQNKGNLAFDCFSEAIRLDPHNACALTHC 117

Query: 456 GQARAALGESVEAIQDLSKAL----EFEPNS---ADILHERGIVNFKFKDFNAAVEDLSA 508
           G      G  VEA +   KAL     ++P +   A +L + G       +    ++    
Sbjct: 118 GILHKEEGRLVEAAESYQKALMADASYKPAAECLAIVLTDLGTSLKLAGNTQEGIQKYYE 177

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
            +K+D     AY  LG+  S + +Y  A   + KA      + EA+ ++   Y++  + E
Sbjct: 178 ALKIDPHYAPAYYNLGVVYSEMMQYDNALSCYEKAALERPMYAEAYCNMGVIYKNRGDLE 237

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG 613
            A+ C ++ L +   F  A +   + L  LG   K   D++ G+ 
Sbjct: 238 MAITCYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDVTQGVA 282

Probable O-linked N-acetylglucosamine transferase (OGT) involved in various processes such as gibberellin (GA) signaling pathway and circadian clock. OGTs catalyze the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine. Probably acts by adding O-linked sugars to yet unknown proteins. Acts as a repressor of GA signaling pathway to inhibit hypocotyl elongation. Functions with GIGANTEA (GI) in pathways controlling flowering, circadian cotyledon movements and hypocotyl elongation. Acts as a light-regulated promoter of elongation via its interaction with GI. Acts as an activator of cytokinin signaling. Required with SEC for gamete and seed development. Its OGT activity has been proved in vitro but not in vivo.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: -

>sp|Q54VG4|SGT_DICDI Small glutamine-rich tetratricopeptide repeat-containing protein OS=Dictyostelium discoideum GN=sgt PE=1 SV=1

 Score = 64.3 bits (155), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 67/117 (57%), Gaps = 1/117 (0%)

Query: 366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR 425
           +KF  ++  + K+I+   + + G A++NEGK+  A+S +++ +  D         R    
Sbjct: 131 QKFMESKAGEVKAIAEKLK-NEGNAKLNEGKHQEALSCYNKAILYDNTNAIYFANRAATY 189

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS 482
           +  +  E +I D  EAI+ NP+ G+A+ R G A  +LG+  EA++  +KA+E EPN+
Sbjct: 190 SALQNFEKSIEDCLEAIKRNPNYGKAYTRMGSAYTSLGKFSEAMEAYNKAIELEPNN 246

May act as a co-chaperone and regulate the ATPase activity of heat shock proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9H6T3|RPAP3_HUMAN RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 15/250 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +GKY  AI  + + +  DP  P     R +A    ++   A SD   A+  N 
Sbjct: 139 KGNKYFKQGKYDEAIDCYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAVALNR 198

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVED 505
           S  +A+ RRG AR AL +  EA +D  + LE EPN+ +  +E R I        N+  ++
Sbjct: 199 SYTKAYSRRGAARFALQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKE 258

Query: 506 LSACVK------------LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLE 552
               +K             +K+   +    G      G+Y++A E + + I  D  N L 
Sbjct: 259 ADIVIKSTEGERKQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALL 318

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
                  + +     E   +C Q +L +D  +SKA+  RG     LG+  +A +D  + L
Sbjct: 319 PANRAMAYLKIQKYEEAEKDCTQAIL-LDGSYSKAFARRGTARTFLGKLNEAKQDFETVL 377

Query: 613 GIDPSNIECL 622
            ++P N + +
Sbjct: 378 LLEPGNKQAV 387

Forms an interface between the RNA polymerase II enzyme and chaperone/scaffolding protein, suggesting that it is required to connect RNA polymerase II to regulators of protein complex formation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
255567975	1101	tetratricopeptide repeat protein, tpr, p	0.942	0.547	0.671	0.0
225438920	1068	PREDICTED: tetratricopeptide repeat prot	0.893	0.535	0.655	0.0
449448472	1046	PREDICTED: tetratricopeptide repeat prot	0.85	0.520	0.590	0.0
449520722	1046	PREDICTED: tetratricopeptide repeat prot	0.85	0.520	0.590	0.0
356565517	1042	PREDICTED: tetratricopeptide repeat prot	0.842	0.517	0.592	0.0
224071273	526	predicted protein [Populus trichocarpa]	0.820	0.998	0.676	0.0
356514306	1050	PREDICTED: tetratricopeptide repeat prot	0.826	0.503	0.583	1e-180
356496945	1047	PREDICTED: tetratricopeptide repeat prot	0.837	0.511	0.575	1e-176
297798124	1043	hypothetical protein ARALYDRAFT_912592 [	0.837	0.513	0.555	1e-171
4468812	1013	putative protein [Arabidopsis thaliana]	0.846	0.535	0.549	1e-169

>gi|255567975|ref|XP_002524965.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis] gi|223535800|gb|EEF37462.1| tetratricopeptide repeat protein, tpr, putative [Ricinus communis]

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/608 (67%), Positives = 478/608 (78%), Gaps = 5/608 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLC+ R+WSKAIR+LDSLL+QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCASRDWSKAIRVLDSLLSQSCTIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQLDP LLQAYILKG AFS+LGRK++AL VW++GYEHAL QSADLKQ LELEELL  
Sbjct: 61  DKALQLDPMLLQAYILKGRAFSSLGRKDDALLVWQQGYEHALRQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQ+R++     V+ S + +  +E   + N K +E S+N ++ SDI +S  +S D SE C
Sbjct: 121 AKQERNIGLRDHVTES-TPMNTTEFATHTNGKSNEASKNRDQLSDISNSCRESGDGSEIC 179

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SK   + D  N   D+A G S + + +   H+NGK  +V  NH+   D SK  + SRD  
Sbjct: 180 SKFGGNFDAMNVIRDKAGGESPITIPECRPHMNGKSDDVCTNHDKLGDKSKLHNESRDTY 239

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           +I   S D+  I N    KA  + +  +  NGTH+  DK+S DS S N  +  S   SKS
Sbjct: 240 KICCNSGDNCAIQNYLSRKAEGDVKTDK--NGTHNFIDKIS-DSESCNVLSDTSVPSSKS 296

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S     S D+++ R KLS K D+  E  +E K++KKF VTRISK+KSI+VDFRLSRGIAQ
Sbjct: 297 STISISSGDTSDIRVKLSNKTDIPNEAGDETKKSKKFSVTRISKTKSITVDFRLSRGIAQ 356

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYASAISIFDQIL EDP YPEALIGRGTA AFQRELEAAI+DF++AIQSNP AGEA
Sbjct: 357 VNEGKYASAISIFDQILTEDPTYPEALIGRGTAHAFQRELEAAIADFSKAIQSNPLAGEA 416

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES+EAI DL+KALEFEPNSADILHERGIVNFKFKDF+AAV+DLSACVK
Sbjct: 417 WKRRGQARAALGESIEAIHDLTKALEFEPNSADILHERGIVNFKFKDFDAAVQDLSACVK 476

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           LDK+NKSAYTYLGLALSS GEYKKAEEAHLK+IQLDR+FLE W HLTQFYQDLAN  KA 
Sbjct: 477 LDKDNKSAYTYLGLALSSTGEYKKAEEAHLKSIQLDRSFLEGWAHLTQFYQDLANLTKAF 536

Query: 572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
           EC++QVL ID RF+KAYHL GLLLHG+G+H+KAIK+LS GL I+ SNIECLYLRASCYHA
Sbjct: 537 ECIKQVLQIDARFAKAYHLHGLLLHGMGEHRKAIKELSLGLSIENSNIECLYLRASCYHA 596

Query: 632 IGEYREAV 639
           IGEY EAV
Sbjct: 597 IGEYGEAV 604

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438920|ref|XP_002279290.1| PREDICTED: tetratricopeptide repeat protein 13-like [Vitis vinifera]

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/609 (65%), Positives = 471/609 (77%), Gaps = 37/609 (6%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           M SAI+ R ELAKLCS R+WSKAIR+LDSLLAQS  IQDICNRAFCYS+LELHKHVIRDC
Sbjct: 1   MESAISERQELAKLCSCRDWSKAIRVLDSLLAQSCVIQDICNRAFCYSKLELHKHVIRDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKALQL+PTLLQAYILKG A SALG+KE+AL VWE+GY HA+ QSADLKQFLELEELL  
Sbjct: 61  DKALQLEPTLLQAYILKGHALSALGKKEDALLVWEQGYGHAVRQSADLKQFLELEELL-- 118

Query: 153 AKQDRSVTCE-YDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETC 211
            KQ+R +TCE + + +  SS++VSES L+ N+K + T +N +K +         D SE C
Sbjct: 119 -KQNRRITCENHAMESPESSISVSESALHVNEKPNSTHKNDSKLN---------DESELC 168

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           S+SS   +                       I+ K     +N +  +D S+    S D S
Sbjct: 169 SESSDTSE-----------------------IHCKPNSTHKNDSKLNDESELCSESSDTS 205

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI+ ++ D  D  +   D  + NE+   ++NGT+D+  K S +S   ++ N  SE  SKS
Sbjct: 206 EIHCKAFDTSDGHDELRDTVNGNEKLNSESNGTYDIFVKSSDESELCSELNDTSEQSSKS 265

Query: 332 SIS-DNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIA 390
           S+   +KSSD +E R K S K+D+  E  +EA RNKKFCVTRISK+KSISVDFRLSRGIA
Sbjct: 266 SVVIHSKSSDISEVRRKSSNKYDIRSELGDEANRNKKFCVTRISKTKSISVDFRLSRGIA 325

Query: 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           QVNEG Y++AISIFDQILKEDP YPEAL+GRGTA AFQREL +AI+DFT+AI+SNPSA E
Sbjct: 326 QVNEGNYSNAISIFDQILKEDPTYPEALVGRGTAYAFQRELSSAIADFTKAIESNPSACE 385

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV 510
           AWKRRGQARAALGES EAI+DL+KALEFEPNS DILHERGIVNFKFKDFNAAVEDLSACV
Sbjct: 386 AWKRRGQARAALGESSEAIEDLTKALEFEPNSTDILHERGIVNFKFKDFNAAVEDLSACV 445

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA 570
           +LDKENKSAYTYLGLALSSIGEYK+AEEAH+K+IQLD+NFLE W HLTQFYQDLAN  KA
Sbjct: 446 QLDKENKSAYTYLGLALSSIGEYKRAEEAHMKSIQLDQNFLEGWAHLTQFYQDLANPTKA 505

Query: 571 LECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH 630
           LEC+++VL ID+ F+KAYHLRGLL HG+G+HKKAI DLS GLGI+ SNIECLYLRASCYH
Sbjct: 506 LECIERVLQIDEGFAKAYHLRGLLRHGMGEHKKAITDLSIGLGIENSNIECLYLRASCYH 565

Query: 631 AIGEYREAV 639
           AIGEY EA+
Sbjct: 566 AIGEYGEAI 574

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449448472|ref|XP_004141990.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/610 (59%), Positives = 435/610 (71%), Gaps = 66/610 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESGFSTVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAV 639
           HAIGEY  AV
Sbjct: 538 HAIGEYGLAV 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520722|ref|XP_004167382.1| PREDICTED: tetratricopeptide repeat protein 13-like [Cucumis sativus]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/610 (59%), Positives = 435/610 (71%), Gaps = 66/610 (10%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA AI+ R+ELAK C  ++WSKAIR+LDSL+A+S  +QDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MAPAISERVELAKFCRSKDWSKAIRVLDSLIAKSCTVQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDP++LQAY+LKG A+ ALG++ +ALS+WE+GY++AL Q+ DLKQ LELEEL+T 
Sbjct: 61  DRALQLDPSILQAYVLKGQAYFALGKRGDALSIWERGYQYALCQTTDLKQLLELEELMTR 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            KQ+++     +V +  S++   ESG+ +                  +S   R+ +    
Sbjct: 121 EKQEKNNVENGEVESRFSAVG-PESGVTS------------------ASKNCRETNNNVG 161

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
           K    PD C                                             S D+SE
Sbjct: 162 KLMEHPDFC-------------------------------------------MKSSDSSE 178

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY---S 329
           +   SSD+  +C G  ++   N     ++NG  D  D+LS D++ L+D  ++   +   S
Sbjct: 179 VCSISSDNLVVCEGGCEEVGPNRDIKCESNGCTDNDDRLS-DASKLHDLRSDMPEFCNKS 237

Query: 330 KSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGI 389
           K +   +KS DST+  SK S   D+    S+EA+R KKF V +ISK+KSISVDFRLSRGI
Sbjct: 238 KLTAFHSKSGDSTDILSKSSKTSDVRGNVSDEARRTKKFSVAKISKTKSISVDFRLSRGI 297

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A+VNEGKYA+AISIFDQILKEDP YPEALIGRGTA AFQREL+AAISDFT+A++SNP AG
Sbjct: 298 AEVNEGKYANAISIFDQILKEDPSYPEALIGRGTAYAFQRELDAAISDFTKALESNPFAG 357

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAWKRRGQARAALG S EAI+DL+KALE EPNSADILHERGIVNFKFKDF AAVEDLS C
Sbjct: 358 EAWKRRGQARAALGASAEAIEDLTKALELEPNSADILHERGIVNFKFKDFYAAVEDLSEC 417

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +KLD  N SAYTYLGLALSSIG+YK+AEEAHLK+IQLDRNFLEAWGHLTQFYQDLANS K
Sbjct: 418 LKLDGCNTSAYTYLGLALSSIGDYKRAEEAHLKSIQLDRNFLEAWGHLTQFYQDLANSTK 477

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           ALECL QVL ID  F KAYHLRGLL HG+G+H+KAIKDLS GL I+ +NIECLYLRASCY
Sbjct: 478 ALECLHQVLQIDSTFGKAYHLRGLLYHGMGEHRKAIKDLSIGLKIENANIECLYLRASCY 537

Query: 630 HAIGEYREAV 639
           HAIGEY  AV
Sbjct: 538 HAIGEYGLAV 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565517|ref|XP_003550986.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/611 (59%), Positives = 434/611 (71%), Gaps = 72/611 (11%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA A + R+ELA+LC+ ++WSKAIRILDSL++ S  IQD+CNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPATSERVELARLCASKDWSKAIRILDSLVSHSNAIQDLCNRAFCYSKLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG A S LGRKE AL VWE+GYEHALHQSADLKQ LELEEL+  
Sbjct: 61  DRALQLDPTLLQAYILKGSALSVLGRKENALLVWEQGYEHALHQSADLKQLLELEELIAT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN----KSDICDSSSQSRDVS 208
           AKQ  +  CE   S +  SL  ++S   +N   SET +  +    ++++C  ++   D S
Sbjct: 121 AKQGNNTLCE---SETHRSLPQTKSVSLSNGSSSETCKIQDTLGTRAELCGDATG--DKS 175

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASR 268
           ETC KS+ + +L +   DE                    RE S   +G  +GS       
Sbjct: 176 ETCLKSADNSNLKHESHDE-------------------YRE-SNKSDGQVNGSPDV---L 212

Query: 269 DASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESY 328
           D    N +S +D    +   DK S N                 S DSA++     N    
Sbjct: 213 DTLSYNSESCNDSSDASESSDKVSTN-----------------SGDSANVPKIFRN--PI 253

Query: 329 SKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRG 388
           SK   SD +  +                     A++NKKFCV RIS + SISVDFRLSRG
Sbjct: 254 SKFIFSDERKGE---------------------ARKNKKFCVARISNTNSISVDFRLSRG 292

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           IA+VNEGKYA AISIFDQILK+DP YPEALIGRGTA AFQREL+AAI+DFT+AIQ NP A
Sbjct: 293 IAEVNEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLA 352

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA 508
           GEAWKRRGQARAALGE VEAI+DL+KALEFEP++ADILHERGIVNFKFK+F+AAVEDLSA
Sbjct: 353 GEAWKRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSA 412

Query: 509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE 568
           CVKLDK+N SAYTYLGLALSSIGEYK+AEEAHLK++QLD+NFLEAW HLTQFYQDLA   
Sbjct: 413 CVKLDKDNTSAYTYLGLALSSIGEYKEAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPT 472

Query: 569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
           KA EC+ ++L+ID RF++AYHLRGLL H +G+H+KAIKDL+ GL ID SNIECLYLRASC
Sbjct: 473 KAQECINRMLHIDGRFARAYHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASC 532

Query: 629 YHAIGEYREAV 639
           YHA+G+Y+EAV
Sbjct: 533 YHAVGQYKEAV 543

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071273|ref|XP_002303385.1| predicted protein [Populus trichocarpa] gi|222840817|gb|EEE78364.1| predicted protein [Populus trichocarpa]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/529 (67%), Positives = 412/529 (77%), Gaps = 4/529 (0%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MASAI+ R+ELAKLCS R+WSKAIR+LDSLL QS  IQDICNRAFCYSQLELHKHVI+DC
Sbjct: 1   MASAISERVELAKLCSSRDWSKAIRVLDSLLVQSCAIQDICNRAFCYSQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           D+ALQLDPTLLQAYILKG AFS+LGRK++AL VWE+GYEHALHQSADLKQ LELEELL  
Sbjct: 61  DRALQLDPTLLQAYILKGRAFSSLGRKDDALLVWEQGYEHALHQSADLKQLLELEELLKF 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK-SDICDSSSQSRDVSETC 211
           AKQDRS  CE  V  S  S+  SES    + K  ETS++ NK SDI +  S SR+V    
Sbjct: 121 AKQDRSAGCETHVVESRLSMYASES--QPHSKSDETSKHQNKLSDISNLCSGSRNVLGIH 178

Query: 212 SKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDAS 271
           SKS  + ++  G SDE  G S   V +SG H N K  E S+N + +SD S+     RDA 
Sbjct: 179 SKSGDNFEIHKGISDEV-GRSLKLVPESGCHTNEKSSETSKNPSKASDKSELCSELRDAP 237

Query: 272 EINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKS 331
           EI  +S D+FD+ NG  DKA  N++ G   N  HD+ D  +  S S +  +  SE  S+ 
Sbjct: 238 EICCKSGDNFDMDNGLSDKAEGNQKPGILVNDNHDILDLPNHVSESCSGVSNASELSSRL 297

Query: 332 SISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQ 391
           S+      D++E  SK S K +M  E ++E K NKK CVTRISK+KSISVDFRLSRGIAQ
Sbjct: 298 SMIPGNLGDTSEILSKSSNKVNMHNEVTDETKGNKKLCVTRISKTKSISVDFRLSRGIAQ 357

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           VNEGKYA+AISIFDQILKEDP YPEALIGRGTARAF+REL +AI+DF++AI+SNPSAGEA
Sbjct: 358 VNEGKYATAISIFDQILKEDPTYPEALIGRGTARAFKRELGSAIADFSKAIESNPSAGEA 417

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
           WKRRGQARAALGES EAI DL+KALEFEPNSADILHERGIV++KFKDF+AAVEDLSACVK
Sbjct: 418 WKRRGQARAALGESAEAINDLTKALEFEPNSADILHERGIVSYKFKDFDAAVEDLSACVK 477

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
           LD +N SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR+FLEAW HLTQF
Sbjct: 478 LDMDNMSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRSFLEAWAHLTQF 526

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514306|ref|XP_003525847.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 354/607 (58%), Positives = 421/607 (69%), Gaps = 78/607 (12%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           R++LA+LC+ ++WSKAIR+LDSL++ S  IQD+CNRAFCYS+LELHKHVIRDCD+ALQLD
Sbjct: 16  RVDLARLCASKDWSKAIRVLDSLISHSNAIQDLCNRAFCYSKLELHKHVIRDCDRALQLD 75

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSV 159
           PT LQAYILKG A S LGR+E AL VWE+GYEHALHQSADLKQ LELEEL+  AKQ ++ 
Sbjct: 76  PTRLQAYILKGSALSVLGRQENALLVWEQGYEHALHQSADLKQLLELEELIETAKQGKNT 135

Query: 160 TCEYD-------VSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
            CE +         +   S   S   L   D +   +E      +C  ++   D SETC 
Sbjct: 136 LCESENHRPPPQTKSDSLSNGSSSETLKIQDTLGTPAE------LCGDATG--DKSETCL 187

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
            S+ + DL +   DE +       +KS   +NG                           
Sbjct: 188 NSADNSDLKHESHDEDRDS-----NKSDGQVNG--------------------------- 215

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSS 332
               S D  DI                           LS +S S NDS+  SES  K S
Sbjct: 216 ----SPDVLDI---------------------------LSYNSESCNDSSDASESSEKVS 244

Query: 333 ISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQV 392
            +   SS+  E       K+    E   EA++NKKFC+ +IS + SISVDFRLSRGIA+V
Sbjct: 245 TNSGDSSNIPEIFRNPISKFIFSDERKGEARKNKKFCIAQISNTNSISVDFRLSRGIAEV 304

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
           NEGKYA AISIFDQILK+DP YPEALIGRGTA AFQREL+AAI+DFT+AIQ NP AGEAW
Sbjct: 305 NEGKYAHAISIFDQILKKDPAYPEALIGRGTAYAFQRELDAAIADFTKAIQFNPLAGEAW 364

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL 512
           KRRGQARAALGE VEAI+DL+KALEFEP++ADILHERGIVNFKFK+F+AAVEDLSACVKL
Sbjct: 365 KRRGQARAALGEFVEAIEDLTKALEFEPDTADILHERGIVNFKFKEFDAAVEDLSACVKL 424

Query: 513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE 572
           DK+N SAYTYLGLALSSIGEYKKAEEAHLK++QLD+NFLEAW HLTQFYQDLA   KA E
Sbjct: 425 DKDNTSAYTYLGLALSSIGEYKKAEEAHLKSLQLDKNFLEAWAHLTQFYQDLAKPTKAQE 484

Query: 573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI 632
           C+ ++L ID RF++A HLRGLL H +G+H+KAIKDL+ GL ID SNIECLYLRASCYHA+
Sbjct: 485 CINKMLQIDGRFARANHLRGLLFHAMGEHRKAIKDLTMGLSIDGSNIECLYLRASCYHAV 544

Query: 633 GEYREAV 639
           G+Y+EAV
Sbjct: 545 GQYKEAV 551

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496945|ref|XP_003517325.1| PREDICTED: tetratricopeptide repeat protein 13-like [Glycine max]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 355/617 (57%), Positives = 428/617 (69%), Gaps = 81/617 (13%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA   + R  LA+LCS ++WSKAIR+LDSL++QS  IQDICNRAFCYS+LELHKHVI+DC
Sbjct: 1   MAPTTSQRATLARLCSSKDWSKAIRVLDSLVSQSGAIQDICNRAFCYSRLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           +KALQLDP+ LQAYILKG A SALGRK +AL VWE+GYEHA HQSADLK  LELEELLT 
Sbjct: 61  NKALQLDPSRLQAYILKGHALSALGRKTDALLVWEQGYEHAQHQSADLKLLLELEELLTT 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK----SDICDSSSQSRDVS 208
            KQ  S   E     + S ++ SES   ++  ++E  EN ++     ++CD++S   D S
Sbjct: 121 TKQGNSALYE----TNGSPVSQSESDSPSDGNLTEICENQDRLSVQDELCDNAS---DKS 173

Query: 209 ETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHING------KLREVSENHNGSSDGSK 262
               KS+ + DL N  + E +       +KS   +NG      KL   SE+ N SSD S+
Sbjct: 174 LILLKSADNFDLRNELNIEDRES-----NKSDSQVNGSPDVIDKLSYNSESCNDSSDTSE 228

Query: 263 STHASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSN 322
           S    +  +     SSD  D+                      ++  KLS          
Sbjct: 229 SCDKDKVFTNSGESSSDSLDVA---------------------EILRKLS---------- 257

Query: 323 TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVD 382
                                  SK +F      E   EA++N KFCV RISK+KSISVD
Sbjct: 258 -----------------------SKFNFP----HEKIGEARKN-KFCVARISKTKSISVD 289

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
           FRLSRGI +VNEGKYA AISIFDQILKEDP YPEALIGRGTA AF+REL+AAI+DF++AI
Sbjct: 290 FRLSRGIGEVNEGKYAHAISIFDQILKEDPAYPEALIGRGTAYAFKRELDAAIADFSKAI 349

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + NPSAGEAWKRRGQARAALGE VEAI+DL+ ALEFE NSADILHERGIVNFKFK+F+AA
Sbjct: 350 EFNPSAGEAWKRRGQARAALGEFVEAIEDLTMALEFESNSADILHERGIVNFKFKEFDAA 409

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           VEDLSACV+LD++NKSAYTYLGLALSSIGEYKKAEEAHLK++Q+DRNFLEAW HLTQFYQ
Sbjct: 410 VEDLSACVQLDRDNKSAYTYLGLALSSIGEYKKAEEAHLKSLQIDRNFLEAWAHLTQFYQ 469

Query: 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622
           DL+   KA ECL Q+L ID RF++AYHLRGLL H +G+H+KAI DL+  L +D +N+ECL
Sbjct: 470 DLSKPTKAQECLNQMLQIDGRFARAYHLRGLLFHAMGEHRKAISDLTMSLNVDGANVECL 529

Query: 623 YLRASCYHAIGEYREAV 639
           YLR SCYHA+G Y+EAV
Sbjct: 530 YLRGSCYHAVGRYKEAV 546

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798124|ref|XP_002866946.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata] gi|297312782|gb|EFH43205.1| hypothetical protein ARALYDRAFT_912592 [Arabidopsis lyrata subsp. lyrata]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 342/616 (55%), Positives = 421/616 (68%), Gaps = 80/616 (12%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           MA+A + R+ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DC
Sbjct: 1   MATATSERVELAKHCSSRNWSKAIRVLDSLLAKQSSILDICNRAFCYNQLELHKHVIKDC 60

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA 152
           DKAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY++AL Q+AD+KQ LELEELLT 
Sbjct: 61  DKALLLEPCAIQAFILKGRALLALGRKQEAVLVLEQGYKNALQQTADVKQLLELEELLTD 120

Query: 153 AKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCS 212
           A++      E D + S      S S    +D+ ++  +NH               S  CS
Sbjct: 121 ARR------EIDATESRQETPASHS--EKSDEKTDKLDNHE--------------SGACS 158

Query: 213 KSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASE 272
                    NG S                H +   RE+ E        SK    S+D S+
Sbjct: 159 ---------NGNS----------------HDHEASRELGEK-------SKIISFSKDTSK 186

Query: 273 INRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNT 323
            ++QS    D+CNG   K   N + G Q NG++         D+HD L+  S  L D + 
Sbjct: 187 ASKQSDGSSDLCNGSAYKEKENGKCGSQINGSYESCKPCNGSDLHDNLAESSDRLGDLSI 246

Query: 324 NSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDF 383
           N    +K  I  +K S   E+R              +E ++NKK+ + RIS + SISVDF
Sbjct: 247 NG---NKLIIKSSKMSHKAEARC-------------DETRKNKKYTIARISGTHSISVDF 290

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           RLSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQ
Sbjct: 291 RLSRGIAQVNEGNYMKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQ 350

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SNP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV
Sbjct: 351 SNPAATEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAV 410

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           +DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+
Sbjct: 411 KDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQE 470

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
           LA+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLY
Sbjct: 471 LADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLY 529

Query: 624 LRASCYHAIGEYREAV 639
           LR SCYHAIGEYR+AV
Sbjct: 530 LRGSCYHAIGEYRDAV 545

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4468812|emb|CAB38213.1| putative protein [Arabidopsis thaliana] gi|7270728|emb|CAB80411.1| putative protein [Arabidopsis thaliana]

 Score =  601 bits (1550), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 338/615 (54%), Positives = 422/615 (68%), Gaps = 73/615 (11%)

Query: 34  ASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCD 93
           A+A + R ELAK CS RNWSKAIR+LDSLLA+   I DICNRAFCY+QLELHKHVI+DCD
Sbjct: 4   ATATSERFELAKHCSSRNWSKAIRVLDSLLAKESSILDICNRAFCYNQLELHKHVIKDCD 63

Query: 94  KALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA 153
           KAL L+P  +QA+ILKG A  ALGRK+EA+ V E+GY+ AL Q+AD+KQ LELEELL  A
Sbjct: 64  KALLLEPFAIQAFILKGRALLALGRKQEAVLVLEQGYKSALQQTADVKQLLELEELLKDA 123

Query: 154 KQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSK 213
           +++        +   + S        +A +   ET   H  S+  D  S   D  E+ + 
Sbjct: 124 RRE--------IDGILKS--------HATESPQETPAYH--SEKSDEKSDKLDNHESGAS 165

Query: 214 SSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEI 273
           S       NG S E+                    E+ E        SK    S+ AS+ 
Sbjct: 166 S-------NGNSHESSS------------------ELGEQ-------SKIVSFSKVASKA 193

Query: 274 NRQSSDDFDICNGPIDKASVNERHGRQTNGTH---------DVHDKLSSDSASLNDSNTN 324
           ++QS  + D+CNG + K   N + G Q NG +         D+HD L+  S    + + N
Sbjct: 194 SKQSDGNSDLCNGSVYKEKENGKCGSQINGYYESCKPCNGSDLHDNLAESSDRFGELSIN 253

Query: 325 SESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFR 384
               +K SI  +K S   E+R  +S          +E+++NKK+ + RIS + SISVDFR
Sbjct: 254 G---NKISIKSSKMSHKAEARCGIS----------DESRKNKKYTIARISGTHSISVDFR 300

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           LSRGIAQVNEG Y  AISIFD++LKE+P YPEALIGRGTA AFQRELE+AI+DFT+AIQS
Sbjct: 301 LSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEALIGRGTAYAFQRELESAIADFTKAIQS 360

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP+A EAWKRRGQARAALGE VEA++DL+KAL FEPNS D+LHERGIVNFK KDF AAV+
Sbjct: 361 NPAASEAWKRRGQARAALGEYVEAVEDLTKALVFEPNSPDVLHERGIVNFKSKDFTAAVK 420

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEEAHLK+IQLD N+LEAW HL QFYQ+L
Sbjct: 421 DLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEEAHLKSIQLDSNYLEAWLHLAQFYQEL 480

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
           A+  KALEC++QVL +D R  KAYHLRGL+ HGLG+H+KAI++LS GL I+ + IECLYL
Sbjct: 481 ADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGLGEHRKAIQELSIGLSIE-NTIECLYL 539

Query: 625 RASCYHAIGEYREAV 639
           R SCYHA+GEYR+AV
Sbjct: 540 RGSCYHAVGEYRDAV 554

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	640
TAIR|locus:2126347	1052	SRFR1 "SUPPRESSOR OF RPS4-RLD	0.437	0.266	0.704	4.6e-148
DICTYBASE|DDB_G0272186	1050	DDB_G0272186 "TPR_1 repeat-con	0.348	0.212	0.290	6.1e-29
ZFIN|ZDB-GENE-080722-25	826	ttc13 "tetratricopeptide repea	0.396	0.307	0.284	2.5e-23
UNIPROTKB|Q74DZ8	266	GSU1166 "TPR domain protein" [	0.348	0.838	0.271	9.1e-15
TIGR_CMR|GSU_1166	266	GSU_1166 "TPR domain protein"	0.348	0.838	0.271	9.1e-15
UNIPROTKB|Q08E34	609	TOMM70A "Translocase of outer	0.414	0.435	0.220	2.6e-12
UNIPROTKB|O94826	608	TOMM70A "Mitochondrial import	0.414	0.435	0.216	5.5e-12
UNIPROTKB|F1NNH9	599	TOMM70A "Uncharacterized prote	0.401	0.429	0.221	6.6e-12
UNIPROTKB|P72802	266	mom72 "Mitochondrial outer mem	0.284	0.684	0.279	7.2e-12
RGD|1303049	610	Tomm70a "translocase of outer	0.414	0.434	0.220	3.3e-11

TAIR|locus:2126347 SRFR1 "SUPPRESSOR OF RPS4-RLD 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1023 (365.2 bits), Expect = 4.6e-148, Sum P(2) = 4.6e-148
 Identities = 198/281 (70%), Positives = 236/281 (83%)

Query:   359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL 418
             S+E+++NKK+ + RIS + SISVDFRLSRGIAQVNEG Y  AISIFD++LKE+P YPEAL
Sbjct:   275 SDESRKNKKYTIARISGTHSISVDFRLSRGIAQVNEGNYTKAISIFDKVLKEEPTYPEAL 334

Query:   419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF 478
             IGRGTA AFQRELE+AI+DFT+AIQSNP+A EAWKRRGQARAALGE VEA++DL+KAL F
Sbjct:   335 IGRGTAYAFQRELESAIADFTKAIQSNPAASEAWKRRGQARAALGEYVEAVEDLTKALVF 394

Query:   479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             EPNS D+LHERGIVNFK KDF AAV+DLS C+K +K+NKSAYTYLGLA +S+GEYKKAEE
Sbjct:   395 EPNSPDVLHERGIVNFKSKDFTAAVKDLSICLKQEKDNKSAYTYLGLAFASLGEYKKAEE 454

Query:   539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXX 598
             AHLK+IQLD N+LEAW HL QFYQ+LA+  KALEC++QVL +D R  KAY          
Sbjct:   455 AHLKSIQLDSNYLEAWLHLAQFYQELADHCKALECIEQVLQVDNRVWKAYHLRGLVFHGL 514

Query:   599 XXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                +KAI++LS GL I+ + IECLYLR SCYHA+GEYR+AV
Sbjct:   515 GEHRKAIQELSIGLSIE-NTIECLYLRGSCYHAVGEYRDAV 554

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0032947 "protein complex scaffold" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

DICTYBASE|DDB_G0272186 DDB_G0272186 "TPR_1 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 306 (112.8 bits), Expect = 6.1e-29, Sum P(3) = 6.1e-29
 Identities = 65/224 (29%), Positives = 125/224 (55%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             +S+G   VN G+Y  AI +F  I+  +P+ P   +GRGT+ AF  +L  AI+DF+ AI+ 
Sbjct:   291 ISQGNTFVNAGQYEEAIELFTMIIDNNPLVPSLYLGRGTSNAFLGQLNEAINDFSRAIEL 350

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAV 503
             + ++ +A+KRRGQ++ A     EA++D ++A+ F+  +  DI + RG+++++ +++  A+
Sbjct:   351 DNTSSDAYKRRGQSKVAKSMEQEALEDFNQAVAFDKEDDYDIYYNRGLLHYQMRNYERAL 410

Query:   504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             +D      ++  +K A+  +GL L+  G   +A +A  +A+++D  F  +  ++ Q ++D
Sbjct:   411 KDFKKVTSIEPSHKLAWNRIGLCLNVNGYPMEAYQAFTEALRIDPYFEASHTNIGQCWKD 470

Query:   564 LANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKD 607
             L   + + +   + L I   +S A                AIKD
Sbjct:   471 LGKFDPSYQSFTKALEICPNYSNALHLRGLLFFNSGRHLDAIKD 514

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-080722-25 ttc13 "tetratricopeptide repeat domain 13" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 74/260 (28%), Positives = 133/260 (51%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAFQ--RELEAAISDFT 439
             L+ G   +  G Y  AI  F  +L+ DP    A+ GRG A   ++ Q  +  + A+ + +
Sbjct:   113 LAIGYVLIGNGLYDEAIKHFSLLLQGDPELVSAIYGRGIAYGKKSLQDIKNADLALYELS 172

Query:   440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
               I   P+  E +++R +  + LG   EA+ DL+KA++ +P SA +   RG + F  +D+
Sbjct:   173 RVIALEPNRPEVYEQRAEILSPLGRISEALLDLTKAIQLQP-SARLYRHRGTLLFISEDY 231

Query:   500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
              AA+ED    ++L K    A  Y GL     G  K+A E   +A++L  +F++A+  L Q
Sbjct:   232 MAAMEDFQQSLELKKNQPIAMLYKGLTFFHRGLLKEAIEVFKEALKLKSDFIDAYKSLGQ 291

Query:   560 FYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNI 619
              Y++L + E A+E  Q+ L +D+   ++              ++AI +    L ++P N 
Sbjct:   292 AYRELGDIENAMESFQKALLLDQNHIQSLQLRGMMLYHHGSLQEAIGNFKRCLQLEPYNE 351

Query:   620 ECLYLRASCYHAIGEYREAV 639
              C Y++   + A+G++ E +
Sbjct:   352 VCQYMKGLSHVAMGQFYEGI 371

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 9.1e-15, P = 9.1e-15
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 9.1e-15, P = 9.1e-15
 Identities = 61/225 (27%), Positives = 102/225 (45%)

Query:   385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             L++GI+    G + +A ++F   ++  P  PE     G A   + +L  A   + + +  
Sbjct:     9 LAKGISLAEGGDFTAAEAMFRTCVERAPDDPEGYFYLGEALVEEGKLAEARQQYEKGLAL 68

Query:   445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
              P   +     G     L E   A+    +A+E +P +AD     G+V    ++ + A+E
Sbjct:    69 APGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGYVNIGLVYNSLEETSKAIE 128

Query:   505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                  +++D  N  AY  LG A   +GE +KA +A  K I+LD     A  +L + Y DL
Sbjct:   129 AFEKALEIDPANVFAYNGLGDAWYGLGEREKAIDAFRKGIELDPTDAAAHFNLGELYYDL 188

Query:   565 ANSEKA-LECLQQVLYIDKRFSKAYXXXXXXXXXXXXXKKAIKDL 608
               +E+A  ECL+ V  +D  F+ +Y             K AI+ L
Sbjct:   189 GETEEAEKECLEAVR-LDPDFTMSYLTLGSLYMDDERVKDAIRYL 232

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q08E34 TOMM70A "Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 63/286 (22%), Positives = 114/286 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   314 IISECSKEIDAQGKY----MAEALLLRATFYLLIGNANAAKPDLDKVISLQEANVK---L 366

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RG+    Q++   +  DF  A   +P   + +  RGQ +  L +  EA+ D  
Sbjct:   367 RANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFD 426

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             + +   P SA         L+ +           AA++     +K        Y     A
Sbjct:   427 ECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQA 486

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   487 LTDQQQFGKADEMYDKCINLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 543

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASC 628
             +   AY             +KAI   +  + +  S +E  +L + C
Sbjct:   544 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLC 589

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|O94826 TOMM70A "Mitochondrial import receptor subunit TOM70" [Homo sapiens (taxid:9606)]

 Score = 153 (58.9 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
 Identities = 62/286 (21%), Positives = 114/286 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   313 IISECSKEIDAEGKY----MAEALLLRATFYLLIGNANAAKPDLDKVISLKEANVK---L 365

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RG+    Q++   +  DF  A   +P   + +  RGQ +  L +  EA+ D  
Sbjct:   366 RANALIKRGSMYMQQQQPLLSTQDFNMAADIDPQNADVYHHRGQLKILLDQVEEAVADFD 425

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             + +   P SA         L+ +           AA++     +K        Y     A
Sbjct:   426 ECIRLRPESALAQAQKCFALYRQAYTGNNSSQIQAAMKGFEEVIKKFPRCAEGYALYAQA 485

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   ++ LE + + + ID 
Sbjct:   486 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DRGLELISKAIEIDN 542

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASC 628
             +   AY             +KAI   +  + +  S +E  +L + C
Sbjct:   543 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLC 588

GO:0016021 "integral to membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005742 "mitochondrial outer membrane translocase complex" evidence=TAS

GO:0008320 "protein transmembrane transporter activity" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1NNH9 TOMM70A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 154 (59.3 bits), Expect = 6.6e-12, Sum P(2) = 6.6e-12
 Identities = 61/275 (22%), Positives = 111/275 (40%)

Query:   369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDP---MYPEALIGRGTA 424
             C   I        +  L R    +  G   +A    DQ++  ED    +   ALI RG+ 
Sbjct:   308 CTKEIEAKGKYMAEALLLRATFYLLIGNANAAKPDLDQVISMEDANVKLRANALIKRGSM 367

Query:   425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                Q++   +  DF  A   +P   + +  RGQ +  L +  EA++D  + +   P+SA 
Sbjct:   368 YMQQQQPALSTQDFNMAADIDPQNADVYHHRGQLKILLDQIEEAVEDFDECIRLRPDSAL 427

Query:   485 ILHERGIVNFK--FKDFN-----AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
                ++    ++  +   N      A++     +K   +    Y     AL+   ++ KA+
Sbjct:   428 AQAQKCFALYRQAYTGNNPLPVQVAMKGFEDVIKKFPKCAEGYALYAQALTDQQQFGKAD 487

Query:   538 EAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXX 593
             E + K I L+ +    + H      Q+ QDL   +K LE + + + ID +   AY     
Sbjct:   488 EMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDNKCDFAYETMGT 544

Query:   594 XXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASC 628
                      KAI+  +  + +  S +E  +L + C
Sbjct:   545 IEVQRGNLDKAIEMFNKAINLAKSEMEMAHLYSLC 579

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P72802 mom72 "Mitochondrial outer membrane 72K protein" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 182 (69.1 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 52/186 (27%), Positives = 96/186 (51%)

Query:   388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
             G+ ++    ++ AI+ F + +K +    +A   RG A+    + +AAI+D+ +AI  NP 
Sbjct:    49 GVDKLAAQNFSGAIADFTESIKLNDQDADAYYNRGYAKHVLGQYQAAITDYNQAISLNPE 108

Query:   448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
                A   R  A   L +  +AIQD S A+E  PN AD    RG    +  +   A+ D +
Sbjct:   109 FAYALGNRCYAYFLLSQYDKAIQDCSNAIEINPNYADFYVYRGNSQSQLGNETTAIADYN 168

Query:   508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH--LTQFYQDLA 565
               ++++ ++ +AY    L  + + + ++A   + ++IQLD +  EA+ +  LTQ+   L 
Sbjct:   169 DAIRINAQHANAYYNRALTHNRLKQDQQALADYNQSIQLDPDSAEAYFNRGLTQYR--LG 226

Query:   566 NSEKAL 571
             +  KA+
Sbjct:   227 DEPKAI 232

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IDA

RGD|1303049 Tomm70a "translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
 Identities = 63/286 (22%), Positives = 112/286 (39%)

Query:   354 MLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM 413
             ++ E S E     K+    ++++  +   F L  G A   +      IS+ +  +K   +
Sbjct:   315 IISECSKEIDAQGKY----MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---L 367

Query:   414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
                ALI RGT    Q++   +  DF  A + +P   + +  RGQ +  L    EA+ D  
Sbjct:   368 RANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFD 427

Query:   474 KALEFEPNSA-------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
               +   P  A         L+ +           AA++     +K        Y     A
Sbjct:   428 ACIRLRPKFALAQAQKCFALYRQAYTANNSSQVQAAMKGFEEVIKKFPRCAEGYALYAQA 487

Query:   527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL----TQFYQDLANSEKALECLQQVLYIDK 582
             L+   ++ KA+E + K I L+ +    + H      Q+ QDL   +K LE + + + ID 
Sbjct:   488 LTDQQQFGKADEMYDKCIDLEPDNATTYVHKGLLQLQWKQDL---DKGLELISKAIEIDN 544

Query:   583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASC 628
             +   AY             +KAI   +  + +  S +E  +L + C
Sbjct:   545 KCDFAYETMGTIEVQRGNMEKAIDMFNKAINLAKSEMEMAHLYSLC 590

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0015031 "protein transport" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030573 hypothetical protein (526 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	640
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-17
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-17
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	9e-16
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	1e-14
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-14
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	5e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	8e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-13
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-12
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-12
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	3e-11
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-11
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-10
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-09
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-08
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-08
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	4e-07
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	7e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	7e-07
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	8e-07
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-06
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	6e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	6e-06
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	6e-06
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	7e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	9e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-05
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	1e-04
TIGR02795	117	TIGR02795, tol_pal_ybgF, tol-pal system protein Yb	1e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	3e-04
COG4785	297	COG4785, NlpI, Lipoprotein NlpI, contains TPR repe	3e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	4e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	4e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-04
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	7e-04
TIGR03939	800	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-g	7e-04
COG2956	389	COG2956, COG2956, Predicted N-acetylglucosaminyl t	7e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.001
COG4783	484	COG4783, COG4783, Putative Zn-dependent protease,	0.001
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	0.001
pfam12895	80	pfam12895, Apc3, Anaphase-promoting complex, cyclo	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.002
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.003
PRK09782	987	PRK09782, PRK09782, bacteriophage N4 receptor, out	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 37/100 (37%), Positives = 57/100 (57%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EA    G     LG+  EA++   KALE +P++AD  +      +K   +  A+ED    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LD +N  AY  LGLA   +G+Y++A EA+ KA++LD N
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 32/99 (32%), Positives = 57/99 (57%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A   LG     +G+Y +A E + KA++LD +  +A+ +L   Y  L   E+ALE  ++ L
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +D   +KAY+  GL  + LG++++A++     L +DP+
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 80.9 bits (200), Expect = 9e-16
 Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 4/254 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+A +  G+   A   ++Q L  DP    A +G       +   + A +   E + ++P
Sbjct: 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADP 190

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +A   +G    +LG    A+    KA+   PN+  +L     +  +  +F  A +  
Sbjct: 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHA 250

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
            A +K    +  A+    L       Y+ A E    A++    +L A      +++   L
Sbjct: 251 DALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ--L 308

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
            N E+A + L Q+L       +A  L   +   LG+  +AI  LS  LG+DP +   L L
Sbjct: 309 GNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 625 RASCYHAIGEYREA 638
               Y A+G++ +A
Sbjct: 369 LGEAYLALGDFEKA 382

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 76.4 bits (186), Expect = 3e-15
 Identities = 66/260 (25%), Positives = 115/260 (44%), Gaps = 10/260 (3%)

Query: 389 IAQVNEGKYASAISIFDQILKEDP--MYPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444
                 G+ A A+ + ++ L+  P       L+    A      LE A+    +A++   
Sbjct: 31  ALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL 90

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI-VNFKFKDFNAAV 503
            P+  EA    G    ALG+  EA++ L KAL  +P+         +   ++  D+  A+
Sbjct: 91  LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEAL 150

Query: 504 EDLSACVKLDKENKS---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQ 559
           E     ++LD E      A   LG  L ++G Y++A E   KA++L+ +   EA  +L  
Sbjct: 151 ELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGL 210

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
            Y  L   E+ALE  ++ L +D   ++A +   LLL  LG++++A++ L   L +DP   
Sbjct: 211 LYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLY 270

Query: 620 ECLYLRASCYH-AIGEYREA 638
                       A+    +A
Sbjct: 271 NLGLALLLLLAEALELLEKA 290

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 69.3 bits (170), Expect = 1e-14
 Identities = 31/99 (31%), Positives = 55/99 (55%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
           + L   G + +K  D++ A+E     ++LD +N  AY  L  A   +G+Y++A E + KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           ++LD +  +A+ +L   Y  L   E+ALE  ++ L +D 
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 76.3 bits (188), Expect = 2e-14
 Identities = 55/239 (23%), Positives = 100/239 (41%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           S+  +L      + E ++  A ++ D++L  DP   +AL+ +G        +E A++ + 
Sbjct: 158 SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYR 217

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +AI   P+               GE  EA +     L+  PNS    + + +V+F+ K++
Sbjct: 218 KAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNY 277

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             A E L   +K   E   A    G +   +G  ++A +   + ++   N  +A   L  
Sbjct: 278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLAS 337

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
               L   ++A+  L   L +D     A  L G     LG  +KA + L+    +DP N
Sbjct: 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 68.6 bits (168), Expect = 3e-14
 Identities = 28/97 (28%), Positives = 48/97 (49%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+ G      G Y  A+  +++ L+ DP   +A      A     + E A+ D+ +A++ 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL 63

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +P   +A+   G A   LG+  EA++   KALE +PN
Sbjct: 64  DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 26/100 (26%), Positives = 50/100 (50%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           EAL+  G       + + A+  + +A++ +P   +A+     A   LG+  EA++D  KA
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           LE +P++A   +  G+  +K   +  A+E     ++LD  
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 72.0 bits (177), Expect = 5e-13
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 5/227 (2%)

Query: 415 PEALIGRGTARAFQRELE--AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           PE LI    A+++ ++ +  AAI     A+Q +P+  EA    G+   ALG+   A ++L
Sbjct: 22  PEELIEA--AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKEL 79

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-YTYLGLALSSIG 531
            KAL        +L            F   +++L     LD E  +      GLA   +G
Sbjct: 80  RKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLG 139

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
           + + A++++ +A+ +D   L A   L Q        ++A   + +VL  D     A  L+
Sbjct: 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLK 199

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           G LL  LG  + A+      + + P+NI  L   A+     GE+ EA
Sbjct: 200 GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 64.3 bits (157), Expect = 8e-13
 Identities = 26/88 (29%), Positives = 48/88 (54%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           EA  +L   Y  L + ++ALE  ++ L +D   + AY+      + LG++++A++D    
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAV 639
           L +DP N +  Y     Y+ +G+Y EA+
Sbjct: 61  LELDPDNAKAYYNLGLAYYKLGKYEEAL 88

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 71.3 bits (175), Expect = 8e-13
 Identities = 62/249 (24%), Positives = 97/249 (38%), Gaps = 20/249 (8%)

Query: 404 FDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
           F Q+L E        D    E L  RG A     +LE A   + +A+  +P +  A    
Sbjct: 106 FQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGL 165

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            Q   A     EA   + + L  +P + D L  +G +     +   A+      + L   
Sbjct: 166 AQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEK 569
           N +    L   L   GE+++A E H  A+          ++L+A   L  F +   N E 
Sbjct: 226 NIAVLLALATILIEAGEFEEA-EKHADALLKKAPNSPLAHYLKA---LVDFQKK--NYED 279

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A E LQ  L     +  A  L G   + LG  ++A + L+  L   P++ +   L AS  
Sbjct: 280 ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339

Query: 630 HAIGEYREA 638
             +G   EA
Sbjct: 340 LRLGRVDEA 348

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 61/232 (26%), Positives = 93/232 (40%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           + +    +  Y  A       LK  P Y  AL+  G +      LE A     + ++  P
Sbjct: 267 KALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP 326

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ +A +     +  LG   EAI  LS AL  +P+    L   G       DF  A E L
Sbjct: 327 NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYL 386

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +   +LD EN +A T LG++  S G+  +A      A QLD     A   L   Y     
Sbjct: 387 AKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQ 446

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
            +KAL   +++       +  ++L G +  G G   KA +     L I+P  
Sbjct: 447 FDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF 498

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 67.6 bits (163), Expect = 3e-12
 Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 7/209 (3%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILK--EDPMYPEALIGRGTARAFQRELEAAISDFT 439
              L   +A +  G+   A+ + ++ L+    P   EAL+  G       + E A+    
Sbjct: 60  GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119

Query: 440 EAIQSNPSAGEAWKRRG-QARAALGESVEAIQDLSKALEFEP---NSADILHERGIVNFK 495
           +A+  +P    A       A   LG+  EA++   KALE +P     A+ L   G +   
Sbjct: 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA 179

Query: 496 FKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              +  A+E L   +KL+ ++   A   LGL    +G+Y++A E + KA++LD +  EA 
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEAL 239

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKR 583
            +L     +L   E+ALE L++ L +D  
Sbjct: 240 YNLALLLLELGRYEEALEALEKALELDPD 268

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 67.4 bits (165), Expect = 2e-11
 Identities = 49/259 (18%), Positives = 93/259 (35%), Gaps = 9/259 (3%)

Query: 373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
           +S     S +  +    + + + KY +AI      L++DP   EA    G       +  
Sbjct: 14  LSACGDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYA 73

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEF--EPNSADILHER 489
           AA  +  +A+       +       ARA L +   + + D         +  +A++L  R
Sbjct: 74  AAEKELRKALSLGYPKNQV--LPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALR 131

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLD 547
           G+          A +       L  + +S Y  LGLA    +   + +A     + +  D
Sbjct: 132 GLAYLGLGQLELAQKSYEQA--LAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD 189

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
              ++A          L N E AL   ++ + +             +L   G+ ++A K 
Sbjct: 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKH 249

Query: 608 LSSGLGIDPSNIECLYLRA 626
             + L   P++    YL+A
Sbjct: 250 ADALLKKAPNSPLAHYLKA 268

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 66.3 bits (162), Expect = 3e-11
 Identities = 68/256 (26%), Positives = 112/256 (43%), Gaps = 16/256 (6%)

Query: 391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE 450
           Q+  G+   AI+     L  DP  P AL   G A     + E A     +A + +P    
Sbjct: 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA 398

Query: 451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---ILHERGIVNFKFKDFNAAVEDLS 507
           A  + G ++ + G+  EAI DL  A + +P       +L    + + +F    AA + L 
Sbjct: 399 ARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKL- 457

Query: 508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS 567
              K   +N S +  LG      G+  KA EA  KA+ ++ +F  A  +L +      N 
Sbjct: 458 --EKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNP 515

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLL-LHGL----GQHKKAIKDLSSGLGIDPSNIECL 622
           + A++  ++VL ID +     +LR +L L GL    G  ++A+  L     ++P  IE  
Sbjct: 516 DDAIQRFEKVLTIDPK-----NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPA 570

Query: 623 YLRASCYHAIGEYREA 638
              A  Y   G+ ++A
Sbjct: 571 LALAQYYLGKGQLKKA 586

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 64.1 bits (154), Expect = 3e-11
 Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 10/220 (4%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNS--ADIL 486
           +L  A++   EA+    +   A    G A    LGE  EA++ L +ALE  PNS  A +L
Sbjct: 3   DLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLL 62

Query: 487 HERGIVNFKFKDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
               +   K      A+E L   ++  L      A   LGL L ++G+Y++A E   KA+
Sbjct: 63  LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKAL 122

Query: 545 QLDRNFLEAWGHLT-QFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQ 600
            LD +   A   L      +L + E+ALE  ++ L +D      ++A    G LL  LG+
Sbjct: 123 ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGR 182

Query: 601 HKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREAV 639
           +++A++ L   L ++P +  E L      Y  +G+Y EA+
Sbjct: 183 YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEAL 222

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 63.6 bits (155), Expect = 2e-10
 Identities = 62/289 (21%), Positives = 103/289 (35%), Gaps = 42/289 (14%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G A +  G +  A     +  + DP    A    G ++  Q +   AI+D   A Q +P 
Sbjct: 370 GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429

Query: 448 AGEA-------WKRRGQARAAL---------------------------GESVEAIQDLS 473
            G A       + R GQ   AL                           G+  +A +   
Sbjct: 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFE 489

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KAL  EP+          ++ +  + + A++     + +D +N  A     LAL+ +   
Sbjct: 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI----LALAGLYLR 545

Query: 534 KKAEEAHL----KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
              EE  +    KA +L+   +E    L Q+Y      +KAL  L +         +A+ 
Sbjct: 546 TGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL 605

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           + G      G   KA+      L + P +   L L A  Y  +  Y +A
Sbjct: 606 MLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 50/236 (21%), Positives = 87/236 (36%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           VD  L +G   ++ G    A++ + + +   P     L+   T      E E A      
Sbjct: 193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
            ++  P++  A   +           +A + L  AL+  P     L   G   ++  +  
Sbjct: 253 LLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLE 312

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A + L+  +K    +  A   L      +G   +A      A+ LD +   A   L + 
Sbjct: 313 QAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
           Y  L + EKA E L +   +D   + A    G+     G   +AI DL +   +DP
Sbjct: 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP 428

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.9 bits (125), Expect = 8e-09
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE-YKKAEEA 539
           ++A+ L   G   FK  D++ A+E     ++LD +N  AY  L LA   +G+ Y++A E 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 540 HLKAIQLD 547
             KA++LD
Sbjct: 61  LEKALELD 68

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 58.1 bits (140), Expect = 1e-08
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           Y  A   F++ L    +  +  I    RGT +  + +   A++D +++I+ +P   +++ 
Sbjct: 310 YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI 369

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           +R      LG+  +A +D  KAL+      DI + R  ++F   +F  A +D    + LD
Sbjct: 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
            +   ++  LG+     G    +     +     +NF EA
Sbjct: 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCK---KNFPEA 466

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.4 bits (121), Expect = 3e-08
 Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDFNAAVEDLSA 508
           EA K  G A   LG+  EAI+   KALE +P++A+  +   +   K  KD+  A+EDL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 509 CVKLDK 514
            ++LD 
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 56.2 bits (135), Expect = 3e-08
 Identities = 87/388 (22%), Positives = 144/388 (37%), Gaps = 74/388 (19%)

Query: 290 KASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISD--NKSSDSTESRSK 347
           K  ++++  R+        +  + +  S    N   E   +    D  + ++ S E R K
Sbjct: 66  KPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANLSEEERKK 125

Query: 348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI 407
            + K   LKE  N+A RNK F       +K+I +               Y+ AI      
Sbjct: 126 YAAK---LKEKGNKAYRNKDF-------NKAIKL---------------YSKAI-----E 155

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE 467
            K DP+Y         A     + E  + D T A++ +P   +A  RR  A   LG+  +
Sbjct: 156 CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212

Query: 468 AIQDLSKAL---EFEPNSADILHERGIVNF-------KFKDFNAAV-------------- 503
           A+ DL+ +     F    +    ER +  F         +     +              
Sbjct: 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR 272

Query: 504 -----EDLSACVKLDKENKSAYTYLGLAL--SSIGE-YKKAEEAHLKAIQLDRNFL---E 552
                  L    +LD+E  +    LGL    S   E Y++A  A  K   LD   L   E
Sbjct: 273 PKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEK--ALDLGKLGEKE 330

Query: 553 AWGH-LTQFYQDLANS-EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
           A    L   ++ L     +AL  L + + +D R +++Y  R  +   LG   KA +D   
Sbjct: 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREA 638
            L ++  + +  Y RA  +   GE+ +A
Sbjct: 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQA 418

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLS 473
            EAL   G A     + + AI  + +A++ +P   EA+     A   LG+   EA++DL 
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 474 KALEFEP 480
           KALE +P
Sbjct: 63  KALELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 53.2 bits (128), Expect = 4e-07
 Identities = 60/279 (21%), Positives = 102/279 (36%), Gaps = 33/279 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           EG    AI  F+++L  DP    A++            E A++   +A + NP   E   
Sbjct: 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q     G+  +A+  L++A +  P+S +     G       D N AV      + L 
Sbjct: 572 ALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            ++  A   L  A + +  Y KA  +  +A++L  +  EA   L Q       +E A + 
Sbjct: 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691

Query: 574 LQQV----------------LYI-DKR-------FSKAYHLRG-----LLLH----GLGQ 600
            + +                LY+  K        + KA          + LH      G 
Sbjct: 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGN 751

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
             +A+K L + L   P++       A  Y A  +Y +A+
Sbjct: 752 TAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            N A  Y +L  ++  + D +KAL+LDP   +AY   G A+  LG+ EEAL  +EK  E 
Sbjct: 38  YNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 51.9 bits (124), Expect = 7e-07
 Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 13/211 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG  +  +GK+  A++   + ++ DP   ++ I R +      + + A  DF +A++ N 
Sbjct: 337 RGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS 396

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +  R Q     GE  +A +D  K+++ +P+      + G+  +K     +++   
Sbjct: 397 EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF 456

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGH--- 556
             C K   E    Y Y G  L    ++ +A E    AI+L++       N L        
Sbjct: 457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           L Q+ QD   +E   E   + L ID     A
Sbjct: 517 LFQWKQDFIEAENLCE---KALIIDPECDIA 544

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 50.5 bits (121), Expect = 8e-07
 Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 8/175 (4%)

Query: 369 CVT--RISKSKSISV--DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA 424
           CVT    S+    +     RL   +  + +G YA A    ++ L+ DP Y  A + R   
Sbjct: 19  CVTDPAPSRQTDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY 78

Query: 425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNS 482
                E + A   + +A+   P+ G+     G    A G   EA+Q   +AL        
Sbjct: 79  YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
           +D L   G+   K   F+ A E L   ++LD +       L LA         A 
Sbjct: 139 SDTLENLGLCALKAGQFDQAEEYLKRALELDPQF--PPALLELARLHYKAGDYAP 191

Length = 250

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 35/148 (23%), Positives = 56/148 (37%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A    G   S++++  +     P   E L  +G  +        A+S   +A +  P+  
Sbjct: 75  ALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW 134

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A   LG   EA +   +ALE  PN   I +  G+      D   A   L   
Sbjct: 135 EAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAE 537
                 +      L L +   G++++AE
Sbjct: 195 YLSPAADSRVRQNLALVVGLQGDFREAE 222

Length = 257

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 55/253 (21%), Positives = 91/253 (35%), Gaps = 22/253 (8%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
            YA AI+   + L+  P   EA IG        +  E+A        + +P A   ++  
Sbjct: 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G       +   AIQ   KAL+  P+S + +     +     +   AV+ L A +K    
Sbjct: 710 GDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTHPN 768

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +    T L     +  +Y KA + +   ++   +      +L   Y +L +  +ALE  +
Sbjct: 769 DAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDP-RALEYAE 827

Query: 576 QVLYIDKRFSKAYHLR----------GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
                     +A  L           G LL   G+  +A+  L   + I P      Y  
Sbjct: 828 ----------RALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877

Query: 626 ASCYHAIGEYREA 638
           A    A G   EA
Sbjct: 878 ALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE-YREAV 639
           ++A    G  L  LG + +AI+     L +DP N E  Y  A  Y  +G+ Y EA+
Sbjct: 3   AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEAL 58

Length = 69

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTE 440
           +   + G A    G Y  AI  +++ L+ DP   EA      A     +  E A+ D  +
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 441 AIQSNP 446
           A++ +P
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 16/68 (23%), Positives = 32/68 (47%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           + D   +   A    GKY  A+  +++ L+ DP   +A    G A     + E A+  + 
Sbjct: 33  NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYE 92

Query: 440 EAIQSNPS 447
           +A++ +P+
Sbjct: 93  KALELDPN 100

Length = 100

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 45/151 (29%), Positives = 68/151 (45%), Gaps = 18/151 (11%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-------- 549
           D   A E+L   ++ D ++  AY  L L    +GE +KAE++  +A+ L+ N        
Sbjct: 46  DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNY 105

Query: 550 --FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             FL   G   Q  Q     E+A+E     LY   + +++    GL     G   KA K 
Sbjct: 106 GTFLCQQGKYEQAMQQF---EQAIE---DPLY--PQPARSLENAGLCALKAGDFDKAEKY 157

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           L+  L IDP   E L   A  Y+  G+Y++A
Sbjct: 158 LTRALQIDPQRPESLLELAELYYLRGQYKDA 188

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 36/173 (20%), Positives = 71/173 (41%), Gaps = 12/173 (6%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           Q +LE A  +  +A++ +P    A+         LGE  +A     +AL   PN+ D+L+
Sbjct: 44  QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
             G    +   +  A++     ++     +   +    GL     G++ KAE+   +A+Q
Sbjct: 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ 163

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQV----------LYIDKRFSKAY 588
           +D    E+   L + Y      + A   L++           L++  R ++A 
Sbjct: 164 IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARAL 216

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 17/117 (14%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL--- 486
           E+EA I+     +Q NP   E W   G+A  ALG + +A+     AL    ++ +IL   
Sbjct: 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGL 196

Query: 487 ------HERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
                      +  K +     A       + LD  N  A + L  A    G+Y +A
Sbjct: 197 AEALYYQAGQQMTAKARALLRQA-------LALDPANIRALSLLAFAAFEQGDYAEA 246

Length = 287

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 16/63 (25%), Positives = 24/63 (38%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP 480
              A     + + A++    A+   P A EA    G+A    G   EA   L  AL  +P
Sbjct: 3   LARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADP 62

Query: 481 NSA 483
           +  
Sbjct: 63  DDP 65

Length = 65

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 17/64 (26%), Positives = 28/64 (43%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L+   A +  G Y  A++  +  L   P+  EAL+  G A   Q  L  A +    A+ +
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 445 NPSA 448
           +P  
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
           A+   ++A++ +PN+A++  +R   N K  +F  AV D +  ++LD     AY   G A 
Sbjct: 21  AVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80

Query: 528 SSIGEYKKAEEA 539
             + EY+ A+ A
Sbjct: 81  MKLEEYQTAKAA 92

Length = 356

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALEC 573
           +N  A   LG AL  +G+Y +A EA+ KA++LD +  EA+ +L   Y  L  + E+ALE 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 574 LQQVLYIDK 582
           L++ L +D 
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +T+AI  +P+  E +  R QA   LG   EA+ D +KA+E +P+ A     +G 
Sbjct: 19  ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGT 78

Query: 492 VNFKFKDFNAA 502
              K +++  A
Sbjct: 79  ACMKLEEYQTA 89

Length = 356

>gnl|CDD|188247 TIGR02795, tol_pal_ybgF, tol-pal system protein YbgF

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 394 EGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--- 447
            G YA AI  F   LK   +    P A    G A   Q +   A   F   ++  P    
Sbjct: 13  AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGDYADAAKAFLAVVKKYPKSPK 72

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A +A  + G +   LG+  +A   L + ++  P S+
Sbjct: 73  APDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 108

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. Length = 117

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-QHKKAIKDLSS 610
           EA  +L      L + ++A+E  ++ L +D   ++AY+   L    LG  +++A++DL  
Sbjct: 4   EALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEK 63

Query: 611 GLGIDP 616
            L +DP
Sbjct: 64  ALELDP 69

Length = 69

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.2 bits (90), Expect = 3e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++L+ N 
Sbjct: 3   ALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|227124 COG4785, NlpI, Lipoprotein NlpI, contains TPR repeats [General function prediction only]

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           RG    +LG    A  D S+AL   P+  ++ +  GI   +  +F+AA E   + ++LD 
Sbjct: 71  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 130

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALE 572
               A+   G+AL   G YK A++  L   Q D N  F   W +L +  Q L + ++A  
Sbjct: 131 TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE--QKL-DPKQAKT 187

Query: 573 CLQQ 576
            L+Q
Sbjct: 188 NLKQ 191

Length = 297

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 2/135 (1%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +A     ++ A ++   AA +     ++ NP      K         G++  ++  L K
Sbjct: 34  AKATGAPESSLAMRQTQGAAAALGAAVLR-NPEDLSIAKLATALYLR-GDADSSLAVLQK 91

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +    P   ++L  +G    +  +F  AV  L    +L   +  A+  LG AL  +G + 
Sbjct: 92  SAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151

Query: 535 KAEEAHLKAIQLDRN 549
           +A  A+ +A++L  N
Sbjct: 152 EARRAYRQALELAPN 166

Length = 257

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +A    G A   LG+  EA++   KALE  PN
Sbjct: 2   KALYNLGNAYLKLGKYDEALEYYEKALELNPN 33

Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 7/68 (10%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKA 570
           +A   L L L  +G+Y +A E   KA++L R           A  +L + Y  L + ++A
Sbjct: 6   AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65

Query: 571 LECLQQVL 578
           LE L++ L
Sbjct: 66  LEYLEKAL 73

Length = 78

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 27/130 (20%), Positives = 46/130 (35%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
                  A  GR        + + A+      I + P      +  G       ++ EAI
Sbjct: 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAI 360

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           + L KAL  +PNS  +         K      A+  L+  +  D E+ + +  L  A + 
Sbjct: 361 ERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420

Query: 530 IGEYKKAEEA 539
           +G   +A  A
Sbjct: 421 LGNRAEALLA 430

Length = 484

>gnl|CDD|234406 TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 22/100 (22%), Positives = 46/100 (46%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A  NE ++  A+ ++ ++L+ DP  P+ L+G     A   +   A+    E +   P+  
Sbjct: 95  AYRNEKQWDKALELYRKLLQRDPNNPDGLLGLALTLADAGKDAEALKYLKEYVARFPTDA 154

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
             ++       A  + ++A+Q   +AL  EP++ +   E 
Sbjct: 155 ARYEALAYVLRAAEDHLDALQAWQQALTLEPDNPEAALEL 194

Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats. Length = 800

>gnl|CDD|225504 COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 14/117 (11%)

Query: 532 EYKKAEEA--HLKAIQLDRNFLEAWGHLTQFYQDLA-------NSEKALECLQQVLYIDK 582
           E++KA +    L  +      +E    + QFY +LA       + ++A E L++ L  DK
Sbjct: 156 EWEKAIDVAERLVKLGGQTYRVE----IAQFYCELAQQALASSDVDRARELLKKALQADK 211

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLRASCYHAIGEYREA 638
           +  +A  + G +    G ++KA++ L   L  +P  + E L +   CY  +G+  E 
Sbjct: 212 KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268

Length = 389

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 11/152 (7%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
           A +  G  A A+   +  LK  P               Q++ + AI  +   ++  P   
Sbjct: 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNA 804

Query: 450 E-----AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                 AW               A++   +AL+  PN   IL   G +  +  + + A+ 
Sbjct: 805 VVLNNLAWLYLELKDP------RALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALP 858

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
            L   V +  E  +   +L LAL + G   +A
Sbjct: 859 LLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227122 COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 35/165 (21%), Positives = 59/165 (35%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            RA    L    +    A +S      A   R       G+  EA++ L   +  +P++ 
Sbjct: 281 IRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP 340

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
             L   G +  +      A+E L   + LD  +      L  AL   G+ ++A     + 
Sbjct: 341 YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRY 400

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
           +  D      W  L Q Y +L N  +AL    +   +  R  +A 
Sbjct: 401 LFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445

Length = 484

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A   LG A   +G+Y +A E + KA++LD N 
Sbjct: 3   ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+   +++L +      AY L        GQ+K+A + L   L +D S+  C YL A 
Sbjct: 6   ENAIFLAEKLLALTPSNEDAYLL-AQCYFLQGQYKRAYELLRK-LKLDNSS-GCRYLLAQ 62

Query: 628 CYHAIGEYREA 638
           C   +G+Y EA
Sbjct: 63  CLLKLGKYDEA 73

Apc3, otherwise known as Cdc27, is one of the subunits of the anaphase-promoting complex or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes. The protein members of this family contain TPR repeats just as those of Apc7 do, and it appears that these TPR units bind the C-termini of the APC co-activators CDH1 and CDC20. Length = 80

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           + + N    Y +L  +   +   +KAL+LDP    AY     A+  LG+ EEAL  +EK 
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Query: 130 YEHA 133
            E  
Sbjct: 61  LELD 64

Length = 100

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 39.8 bits (91), Expect = 0.003
 Identities = 30/124 (24%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAK-LCSLRNWSKAIRILDSLL--AQSY 67
           Y L    + +   ++ + +D  +     A + L   L +L  + +A+ +L+  L      
Sbjct: 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD 200

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           + + + N    Y +L  ++  +   +KAL+LDP   +A          LGR EEAL   E
Sbjct: 201 DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260

Query: 128 KGYE 131
           K  E
Sbjct: 261 KALE 264

Length = 291

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 3/95 (3%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
           +A A+ ++ Q +  DP   E    R  A         A++D  +AI+ +PS  +A+ R+G
Sbjct: 18  FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

Query: 457 QARAALGESVEAIQDLSKALEFEPNS---ADILHE 488
            A   L E   A   L K     P       ++ E
Sbjct: 78  TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112

Length = 356

>gnl|CDD|236624 PRK09782, PRK09782, bacteriophage N4 receptor, outer membrane subunit; Provisional

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
            R    + E A++D T ++   PSA     R    R        A+ DL  ALE EPN
Sbjct: 585 QRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQR-HNVPAAVSDLRAALELEPN 641

Length = 987

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	640
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	100.0
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	100.0
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.98
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.97
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.96
KOG1126	638	consensus DNA-binding cell division cycle control	99.96
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.95
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.95
KOG1126	638	consensus DNA-binding cell division cycle control	99.95
KOG2003	840	consensus TPR repeat-containing protein [General f	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.94
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.94
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.94
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
KOG2003	840	consensus TPR repeat-containing protein [General f	99.92
PRK14574	822	hmsH outer membrane protein; Provisional	99.91
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.91
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.9
KOG2076	895	consensus RNA polymerase III transcription factor	99.9
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.9
KOG1129	478	consensus TPR repeat-containing protein [General f	99.89
PRK12370	553	invasion protein regulator; Provisional	99.89
KOG2076	895	consensus RNA polymerase III transcription factor	99.88
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.87
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.87
PRK14574	822	hmsH outer membrane protein; Provisional	99.87
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.86
PRK11189	296	lipoprotein NlpI; Provisional	99.86
KOG1125	579	consensus TPR repeat-containing protein [General f	99.86
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.86
PRK12370	553	invasion protein regulator; Provisional	99.85
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.84
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.84
PRK11189	296	lipoprotein NlpI; Provisional	99.84
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.84
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.83
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.83
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.83
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.83
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.83
KOG1129	478	consensus TPR repeat-containing protein [General f	99.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.82
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.81
PLN02789	320	farnesyltranstransferase	99.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.81
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.8
PLN03218	1060	maturation of RBCL 1; Provisional	99.79
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.78
KOG1125	579	consensus TPR repeat-containing protein [General f	99.78
KOG0553	304	consensus TPR repeat-containing protein [General f	99.78
PLN03077	857	Protein ECB2; Provisional	99.78
PLN03218	1060	maturation of RBCL 1; Provisional	99.78
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.78
PLN02789	320	farnesyltranstransferase	99.77
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.77
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.76
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.75
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.75
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.73
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.73
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.73
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.72
PLN03077	857	Protein ECB2; Provisional	99.71
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.68
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.66
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.66
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.65
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.6
PRK15359	144	type III secretion system chaperone protein SscB;	99.6
KOG4234	271	consensus TPR repeat-containing protein [General f	99.6
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.59
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.58
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.56
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.55
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.55
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.54
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.53
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.53
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.52
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.51
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.5
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.48
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.44
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.43
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.43
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.41
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.41
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.4
KOG0553	304	consensus TPR repeat-containing protein [General f	99.4
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.4
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.37
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.35
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	99.34
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.34
PRK04841	903	transcriptional regulator MalT; Provisional	99.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.32
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.32
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.31
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.27
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.25
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.24
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.23
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.22
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.22
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.17
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	99.17
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	99.17
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.16
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.15
PRK04841	903	transcriptional regulator MalT; Provisional	99.14
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.09
PRK11906	458	transcriptional regulator; Provisional	99.07
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	99.06
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.06
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.05
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.05
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.05
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.05
COG0457	291	NrfG FOG: TPR repeat [General function prediction	99.04
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	99.03
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.03
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	99.01
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.0
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.99
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.98
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.98
PRK11906	458	transcriptional regulator; Provisional	98.98
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.97
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.97
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.97
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.95
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.95
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.93
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.92
PRK15331	165	chaperone protein SicA; Provisional	98.92
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.9
PRK15331	165	chaperone protein SicA; Provisional	98.89
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.88
PRK10803	263	tol-pal system protein YbgF; Provisional	98.88
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.86
KOG4555	175	consensus TPR repeat-containing protein [Function	98.86
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.85
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.84
PRK10803	263	tol-pal system protein YbgF; Provisional	98.81
KOG1941	518	consensus Acetylcholine receptor-associated protei	98.81
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.8
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.77
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.74
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.74
PF13371	73	TPR_9: Tetratricopeptide repeat	98.72
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.72
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.71
PF12688	120	TPR_5: Tetratrico peptide repeat	98.71
PF12688	120	TPR_5: Tetratrico peptide repeat	98.69
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.68
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.65
PF13512	142	TPR_18: Tetratricopeptide repeat	98.64
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
KOG4234	271	consensus TPR repeat-containing protein [General f	98.59
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.57
PF13371	73	TPR_9: Tetratricopeptide repeat	98.57
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.5
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.5
PF13512	142	TPR_18: Tetratricopeptide repeat	98.48
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.48
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.47
COG3898	531	Uncharacterized membrane-bound protein [Function u	98.42
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.38
KOG2471	696	consensus TPR repeat-containing protein [General f	98.35
KOG2796	366	consensus Uncharacterized conserved protein [Funct	98.33
KOG2471	696	consensus TPR repeat-containing protein [General f	98.31
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.31
KOG4555	175	consensus TPR repeat-containing protein [Function	98.3
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.27
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.23
KOG1586	288	consensus Protein required for fusion of vesicles	98.23
KOG2300	629	consensus Uncharacterized conserved protein [Funct	98.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.18
PF13431	34	TPR_17: Tetratricopeptide repeat	98.15
KOG2610	491	consensus Uncharacterized conserved protein [Funct	98.15
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.14
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.1
KOG1586	288	consensus Protein required for fusion of vesicles	98.09
PF13428	44	TPR_14: Tetratricopeptide repeat	98.08
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.08
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	98.06
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	98.06
KOG1585	308	consensus Protein required for fusion of vesicles	98.06
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.02
PF13428	44	TPR_14: Tetratricopeptide repeat	98.0
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.97
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.94
KOG1585	308	consensus Protein required for fusion of vesicles	97.88
KOG2300	629	consensus Uncharacterized conserved protein [Funct	97.88
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.88
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.82
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.77
PF13431	34	TPR_17: Tetratricopeptide repeat	97.76
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.75
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.68
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.68
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.66
KOG1310	758	consensus WD40 repeat protein [General function pr	97.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.58
KOG1550	552	consensus Extracellular protein SEL-1 and related	97.57
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	97.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.49
KOG1258	577	consensus mRNA processing protein [RNA processing	97.49
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.44
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	97.42
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.4
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	97.39
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.31
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.31
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.26
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.25
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.22
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.22
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.22
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.21
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	97.21
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.12
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	97.12
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.12
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.11
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.1
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.09
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.09
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.08
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	97.05
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	96.93
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.91
KOG1550	552	consensus Extracellular protein SEL-1 and related	96.72
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.68
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.67
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	96.63
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.59
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.58
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.57
PRK10941	269	hypothetical protein; Provisional	96.56
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.56
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.5
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.48
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	96.48
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.41
KOG3783	546	consensus Uncharacterized conserved protein [Funct	96.39
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.3
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	96.29
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.26
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.22
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	96.17
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.17
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.14
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.14
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	96.13
PRK10941	269	hypothetical protein; Provisional	96.11
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	96.04
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.03
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.93
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.89
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.82
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.8
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.79
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.77
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.75
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.66
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.65
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.56
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.5
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.48
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	95.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.39
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	95.37
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.26
KOG4814	872	consensus Uncharacterized conserved protein [Funct	95.24
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.2
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.14
KOG3364	149	consensus Membrane protein involved in organellar	95.11
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.99
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	94.95
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.62
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.59
KOG3364	149	consensus Membrane protein involved in organellar	94.51
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	94.4
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.36
KOG3783	546	consensus Uncharacterized conserved protein [Funct	94.24
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.17
KOG1310	758	consensus WD40 repeat protein [General function pr	94.06
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.82
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.81
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.71
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.7
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.69
KOG4814	872	consensus Uncharacterized conserved protein [Funct	93.67
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.62
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.58
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.54
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	93.52
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.43
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.43
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.31
KOG0529	421	consensus Protein geranylgeranyltransferase type I	93.31
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.31
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	93.23
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	93.14
KOG2422	665	consensus Uncharacterized conserved protein [Funct	93.08
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.69
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.17
KOG2581	493	consensus 26S proteasome regulatory complex, subun	92.14
KOG0529	421	consensus Protein geranylgeranyltransferase type I	92.07
KOG1463	411	consensus 26S proteasome regulatory complex, subun	91.99
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	91.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.86
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	91.82
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.44
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.31
COG2912	269	Uncharacterized conserved protein [Function unknow	91.02
COG5159	421	RPN6 26S proteasome regulatory complex component [	91.01
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.78
COG2912	269	Uncharacterized conserved protein [Function unknow	90.71
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.56
KOG1258	577	consensus mRNA processing protein [RNA processing	90.05
KOG2581	493	consensus 26S proteasome regulatory complex, subun	89.9
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.6
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.44
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	89.37
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.25
COG5159	421	RPN6 26S proteasome regulatory complex component [	89.22
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	88.98
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	88.96
COG3947	361	Response regulator containing CheY-like receiver a	88.35
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.88
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	87.36
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.23
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.96
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	86.82
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.63
COG4941	415	Predicted RNA polymerase sigma factor containing a	86.61
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	85.98
PRK11619	644	lytic murein transglycosylase; Provisional	85.7
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.72
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	84.46
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	84.44
KOG0128	881	consensus RNA-binding protein SART3 (RRM superfami	83.64
KOG1463	411	consensus 26S proteasome regulatory complex, subun	83.18
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.89
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	82.85
PF13041	50	PPR_2: PPR repeat family	82.6
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	81.95
PRK11619	644	lytic murein transglycosylase; Provisional	81.81
COG3947	361	Response regulator containing CheY-like receiver a	81.5
PF12739	414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	81.23
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	81.09
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	80.69
PHA02537	230	M terminase endonuclease subunit; Provisional	80.09

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-41  Score=325.69  Aligned_cols=267  Identities=18%  Similarity=0.232  Sum_probs=257.9

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      .+.++.+.+|.-+++++++|.+|-..+.|++|+..|.+++...|+++.++-++|.+|+.+|..+-|+..|+++++..|+.
T Consensus       240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F  319 (966)
T KOG4626|consen  240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNF  319 (966)
T ss_pred             HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCc
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      ++++.++|..+...|+..+|..+|.+++.+.|.++++.+++|.++..+|.+++|...|.++++..|....++.++|.+|.
T Consensus       320 ~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k  399 (966)
T KOG4626|consen  320 PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK  399 (966)
T ss_pred             hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      ++|++++|+.+|++++++.|...+++.++|..|..+|+.+.|+..|.+++..+|..++++.++|.+|...|+..+|+..|
T Consensus       400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY  479 (966)
T KOG4626|consen  400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY  479 (966)
T ss_pred             hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHcCCc
Q 006562          609 SSGLGIDPSNIECLYLRASCYHAIGEY  635 (640)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~  635 (640)
                      +.++++.|+.++++-+++.++.-.-++
T Consensus       480 ~~aLklkPDfpdA~cNllh~lq~vcdw  506 (966)
T KOG4626|consen  480 RTALKLKPDFPDAYCNLLHCLQIVCDW  506 (966)
T ss_pred             HHHHccCCCCchhhhHHHHHHHHHhcc
Confidence            999999999999999998887655444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-41  Score=314.98  Aligned_cols=436  Identities=20%  Similarity=0.228  Sum_probs=323.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~  120 (640)
                      .+.+||++|+|++||.+|+.||+++|+ +..|.|||.||..+|+|++.+.+|.+||+++|+++++++|++.++.++|++.
T Consensus       121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~  200 (606)
T KOG0547|consen  121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFD  200 (606)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHH
Confidence            445889999999999999999999988 8889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccc
Q 006562          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (640)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (640)
                      +|+....-                               +|+...             +...+..-.+.+.+++......
T Consensus       201 eal~D~tv-------------------------------~ci~~~-------------F~n~s~~~~~eR~Lkk~a~~ka  236 (606)
T KOG0547|consen  201 EALFDVTV-------------------------------LCILEG-------------FQNASIEPMAERVLKKQAMKKA  236 (606)
T ss_pred             HHHHhhhH-------------------------------HHHhhh-------------cccchhHHHHHHHHHHHHHHHH
Confidence            99954332                               222221             0000000001111111000000


Q ss_pred             ccCCccccccccCCCCCCCCc-ccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562          201 SSQSRDVSETCSKSSHDPDLC-NGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (640)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (640)
                      .                 +.. ....+.+|...++..+...|+......                               
T Consensus       237 ~-----------------e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~-------------------------------  268 (606)
T KOG0547|consen  237 K-----------------EKLKENRPPVLPSATFIASYFGSFHADPKPL-------------------------------  268 (606)
T ss_pred             H-----------------HhhcccCCCCCCcHHHHHHHHhhcccccccc-------------------------------
Confidence            0                 001 122333344344444443332211100                               


Q ss_pred             cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCC-chHHHHHhhHHHhhhhHHH
Q 006562          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSS-DSTESRSKLSFKWDMLKET  358 (640)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~  358 (640)
                                                                         ......+.+ ...+.+..++......-..
T Consensus       269 ---------------------------------------------------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~  297 (606)
T KOG0547|consen  269 ---------------------------------------------------FDNKSDKSDAALAEALEALEKGLEEGYLK  297 (606)
T ss_pred             ---------------------------------------------------ccCCCccchhhHHHHHHHHHhhCchhHHH
Confidence                                                               000000000 1111112122111111000


Q ss_pred             HHHHHhhHHHH-H-----hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH
Q 006562          359 SNEAKRNKKFC-V-----TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE  432 (640)
Q Consensus       359 ~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~  432 (640)
                      ........... .     ..+...-..-+..+...|..++-.|++..|...|+.++.++|.+...+..+|.+|....+.+
T Consensus       298 a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~  377 (606)
T KOG0547|consen  298 AYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSE  377 (606)
T ss_pred             HHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccH
Confidence            10000000000 0     00000111226788889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006562          433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (640)
Q Consensus       433 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (640)
                      +....|.++..++|.++++|+..|++++-++++++|+..|++++.++|++...+..++.+.++++++++++..|+.+.+.
T Consensus       378 ~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk  457 (606)
T KOG0547|consen  378 KMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK  457 (606)
T ss_pred             HHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCh
Q 006562          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRFS  585 (640)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~  585 (640)
                      .|+.++++...|.++..+++|++|++.|..++.+.|.      ++..+...|.+.. ..+++..|+.+++++++++|...
T Consensus       458 FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce  537 (606)
T KOG0547|consen  458 FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCE  537 (606)
T ss_pred             CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHH
Confidence            9999999999999999999999999999999999998      5555555554433 45899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      .++..+|.+..++|+.++|+++|+++..+..+..+
T Consensus       538 ~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E  572 (606)
T KOG0547|consen  538 QAYETLAQFELQRGKIDEAIELFEKSAQLARTESE  572 (606)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999987665443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=100.00  E-value=9.4e-41  Score=321.38  Aligned_cols=271  Identities=23%  Similarity=0.277  Sum_probs=264.9

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      ++.+++...|.-+-+|..+|..+..+|+...|+..|+++++++|+.+.+|+++|.+|...+.++.|+.+|.+++...|++
T Consensus       206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~  285 (966)
T KOG4626|consen  206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNH  285 (966)
T ss_pred             HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcc
Confidence            55566677788888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      +.++.++|.+|+.+|..+-|+..|++++++.|..++++.++|..+-..|+..+|..+|.+++.+.|+.+.+.+++|.++.
T Consensus       286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~  365 (966)
T KOG4626|consen  286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR  365 (966)
T ss_pred             hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      .+|.+++|...|.++++..|....++.++|.+|.++|++++|+.+|+.++++.|..++++.++|..|..+|+...|+..|
T Consensus       366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y  445 (966)
T KOG4626|consen  366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCY  445 (966)
T ss_pred             HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          609 SSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      .+++.++|...+++.+||.+|...|+..+||
T Consensus       446 ~rAI~~nPt~AeAhsNLasi~kDsGni~~AI  476 (966)
T KOG4626|consen  446 TRAIQINPTFAEAHSNLASIYKDSGNIPEAI  476 (966)
T ss_pred             HHHHhcCcHHHHHHhhHHHHhhccCCcHHHH
Confidence            9999999999999999999999999999886

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=6.4e-38  Score=336.77  Aligned_cols=437  Identities=19%  Similarity=0.188  Sum_probs=326.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 006562           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKE  120 (640)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~  120 (640)
                      ..+..+|..|+|++||.+|+++|.+.|++..|.++|.||.++|+|++|+.+|+++|+++|++.++++++|.+|..+|+++
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence            44557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccc
Q 006562          121 EALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDS  200 (640)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (640)
                      +|+..|..+..+.+-.......++.............     ...                        ...+       
T Consensus       212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-----~~l------------------------~~~~-------  255 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAK-----EIL------------------------ETKP-------  255 (615)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHH-----HHH------------------------hcCC-------
Confidence            9999998886665433322111111100000000000     000                        0000       


Q ss_pred             ccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCc
Q 006562          201 SSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDD  280 (640)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (640)
                                               ...+....+..+...+.....                                  
T Consensus       256 -------------------------~~~~~~~~~~~~~~~~~~~~~----------------------------------  276 (615)
T TIGR00990       256 -------------------------ENLPSVTFVGNYLQSFRPKPR----------------------------------  276 (615)
T ss_pred             -------------------------CCCCCHHHHHHHHHHccCCcc----------------------------------
Confidence                                     000000000000000000000                                  


Q ss_pred             ccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHH
Q 006562          281 FDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSN  360 (640)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  360 (640)
                                                        ...++.....          ......+...+   ....  ......
T Consensus       277 ----------------------------------~~~~~~~~~~----------~~~~~~~~~~l---~~~~--~e~~~~  307 (615)
T TIGR00990       277 ----------------------------------PAGLEDSNEL----------DEETGNGQLQL---GLKS--PESKAD  307 (615)
T ss_pred             ----------------------------------hhhhhccccc----------ccccccchHHH---HHHH--HHhhhh
Confidence                                              0000000000          00000000000   0000  000000


Q ss_pred             HHHhhHHHHHhhhhcc---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 006562          361 EAKRNKKFCVTRISKS---KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD  437 (640)
Q Consensus       361 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (640)
                      +........+......   .|.....+..+|.+++..|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  387 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED  387 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            1111222244444433   5777888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562          438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (640)
Q Consensus       438 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (640)
                      |+++++.+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..+++++...|+++
T Consensus       388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~  467 (615)
T TIGR00990       388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP  467 (615)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH------HHHHHHH-HHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA------WGHLTQF-YQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (640)
                      .++..+|.++...|++++|+..|++++.+.|.....      +...+.. +...|++++|+.++++++..+|++..++..
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~  547 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT  547 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            999999999999999999999999999998875332      2233333 344799999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCHHH
Q 006562          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (640)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (640)
                      +|.++..+|++++|+.+|++++++.+...+.
T Consensus       548 la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~  578 (615)
T TIGR00990       548 MAQLLLQQGDVDEALKLFERAAELARTEGEL  578 (615)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHhccHHHH
Confidence            9999999999999999999999998875553

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=4.3e-32  Score=309.95  Aligned_cols=450  Identities=16%  Similarity=0.086  Sum_probs=352.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~  123 (640)
                      .++..|++++|+..+.+.+... +++..+..+|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+
T Consensus       440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  519 (899)
T TIGR02917       440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI  519 (899)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            4568888889988888888877 455668888888888899999999888888888888888888888888888888999


Q ss_pred             HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (640)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (640)
                      ..|++++...|.....+..+..+...................  ..   +                              
T Consensus       520 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~---~------------------------------  564 (899)
T TIGR02917       520 QRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAE--LN---P------------------------------  564 (899)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC---c------------------------------
Confidence            888888888888776665555544332222111110000000  00   0                              


Q ss_pred             CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (640)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (640)
                                     ....          ............+                                      
T Consensus       565 ---------------~~~~----------~~~~l~~~~~~~~--------------------------------------  581 (899)
T TIGR02917       565 ---------------QEIE----------PALALAQYYLGKG--------------------------------------  581 (899)
T ss_pred             ---------------cchh----------HHHHHHHHHHHCC--------------------------------------
Confidence                           0000          0000000000000                                      


Q ss_pred             cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccC-CCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS-DNKSSDSTESRSKLSFKWDMLKETSNEA  362 (640)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (640)
                                         ........                  ....+. .+........+..+....+....     
T Consensus       582 -------------------~~~~A~~~------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----  619 (899)
T TIGR02917       582 -------------------QLKKALAI------------------LNEAADAAPDSPEAWLMLGRAQLAAGDLNK-----  619 (899)
T ss_pred             -------------------CHHHHHHH------------------HHHHHHcCCCCHHHHHHHHHHHHHcCCHHH-----
Confidence                               00000000                  000000 00011111222222222222222     


Q ss_pred             HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                         ....+..+....|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+.
T Consensus       620 ---A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       620 ---AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             ---HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               22245555666788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (640)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (640)
                      ...|.++..+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|...+++++...|++..++..
T Consensus       697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~  775 (899)
T TIGR02917       697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA  775 (899)
T ss_pred             hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999999999999999999999987 778889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      +|.++...|++++|+..|++++...|+++.++..++.++...|+ .+|+.++++++...|+++..+..+|.++...|+++
T Consensus       776 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  854 (899)
T TIGR02917       776 LAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD  854 (899)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999 88999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +|+.+|+++++.+|.++.++..++.++...|++++|+
T Consensus       855 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~  891 (899)
T TIGR02917       855 RALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR  891 (899)
T ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999999999999999986

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.2e-31  Score=304.20  Aligned_cols=450  Identities=16%  Similarity=0.084  Sum_probs=359.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~  123 (640)
                      -++..|++++|+..|.+++...|+ .......+.++.+.|++++|+..+++.+...|+++..+..+|.+|...|++++|+
T Consensus       406 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  485 (899)
T TIGR02917       406 SKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAR  485 (899)
T ss_pred             HHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHH
Confidence            457899999999999999999844 4557788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (640)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (640)
                      ..|++++++.|..+..+..+..+.........+.........  ..                       +          
T Consensus       486 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~-----------------------~----------  530 (899)
T TIGR02917       486 EAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT--ID-----------------------P----------  530 (899)
T ss_pred             HHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hC-----------------------c----------
Confidence            999999999999887766555444332222111100000000  00                       0          


Q ss_pred             CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (640)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (640)
                                     ...          .............+                                      
T Consensus       531 ---------------~~~----------~~~~~l~~~~~~~~--------------------------------------  547 (899)
T TIGR02917       531 ---------------KNL----------RAILALAGLYLRTG--------------------------------------  547 (899)
T ss_pred             ---------------CcH----------HHHHHHHHHHHHcC--------------------------------------
Confidence                           000          00000000000000                                      


Q ss_pred             cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccC-CCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSIS-DNKSSDSTESRSKLSFKWDMLKETSNEA  362 (640)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (640)
                                         ........+.                  ..+. .+........+.......+....     
T Consensus       548 -------------------~~~~A~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----  585 (899)
T TIGR02917       548 -------------------NEEEAVAWLE------------------KAAELNPQEIEPALALAQYYLGKGQLKK-----  585 (899)
T ss_pred             -------------------CHHHHHHHHH------------------HHHHhCccchhHHHHHHHHHHHCCCHHH-----
Confidence                               0000000000                  0000 00000011111111111121111     


Q ss_pred             HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                         ....+.......|.++..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++
T Consensus       586 ---A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  662 (899)
T TIGR02917       586 ---ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRAL  662 (899)
T ss_pred             ---HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               12234455566788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (640)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (640)
                      +..|++..++..++.++...|++++|+..++.+....|.++..+..+|.++...|++++|+..|++++...|++ ..+..
T Consensus       663 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~  741 (899)
T TIGR02917       663 ELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIK  741 (899)
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999987 77888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      ++.++...|++++|...+++++...|+++.++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .
T Consensus       742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~  820 (899)
T TIGR02917       742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P  820 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 8


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +|+.++++++...|+++..+..+|.++...|++++|+
T Consensus       821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  857 (899)
T TIGR02917       821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRAL  857 (899)
T ss_pred             HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999999999999999999999999986

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.7e-32  Score=259.45  Aligned_cols=460  Identities=19%  Similarity=0.158  Sum_probs=328.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562           39 ARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (640)
Q Consensus        39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g  117 (640)
                      .+.++..+|..|||+.||.+|++||.++ +|+..|.||..||..+|+|++|+.+..++++++|.++++|.++|.++.-+|
T Consensus         5 ~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen    5 LKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcc
Confidence            3445556699999999999999999999 888889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (640)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (640)
                      +|++|+..|..+|+..|+...-..++.+........                       .........+....+++....
T Consensus        85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~-----------------------~~~~~~p~~~~~l~~~p~t~~  141 (539)
T KOG0548|consen   85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAA-----------------------DQLFTKPYFHEKLANLPLTNY  141 (539)
T ss_pred             cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHh-----------------------hhhccCcHHHHHhhcChhhhh
Confidence            999999999999777776655444444433111000                       011112222333333333322


Q ss_pred             cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (640)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (640)
                      ...+   +.+..+......+|..++.++.+.+.......+. +++...                      +....+    
T Consensus       142 ~~~~---~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~~----------------------~~~~~~----  191 (539)
T KOG0548|consen  142 SLSD---PAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDELL----------------------FYASGI----  191 (539)
T ss_pred             hhcc---HHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHh-cCcccc----------------------cccccc----
Confidence            2222   4555555555555555555555333322222221 110000                      000000    


Q ss_pred             CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchH-HHHHhhHHHhhhhH
Q 006562          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDST-ESRSKLSFKWDMLK  356 (640)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~  356 (640)
                                                       ....+.       ..+. .    ....+...+ .......       
T Consensus       192 ---------------------------------~~~~~~-------~~p~-~----~~~~~~~~~~d~~ee~~-------  219 (539)
T KOG0548|consen  192 ---------------------------------EILASM-------AEPC-K----QEHNGFPIIEDNTEERR-------  219 (539)
T ss_pred             ---------------------------------ccCCCC-------CCcc-c----ccCCCCCccchhHHHHH-------
Confidence                                             000000       0000 0    000000000 0000000       


Q ss_pred             HHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 006562          357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS  436 (640)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~  436 (640)
                                          .-......-.+|...+...+|..|++.|..+++++ .+...+...+.+|+..|.+...+.
T Consensus       220 --------------------~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~  278 (539)
T KOG0548|consen  220 --------------------VKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIE  278 (539)
T ss_pred             --------------------HHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhc
Confidence                                00003344578899999999999999999999999 888888999999999999999999


Q ss_pred             HHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          437 DFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       437 ~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                      ....+++......       .+...+|..|...++++.|+.+|.+++...-.        ..+.-+....++++......
T Consensus       279 ~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~  350 (539)
T KOG0548|consen  279 LCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERK  350 (539)
T ss_pred             chHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHH
Confidence            9998887655432       23444677888889999999999998765543        45555666778888888887


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  589 (640)
                      .-.+|.-..--..-|..++..|+|..|+..|.+++..+|+++..|.+.|.+|..+|.+..|+...+.+++++|+...+|.
T Consensus       351 a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~  430 (539)
T KOG0548|consen  351 AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYL  430 (539)
T ss_pred             HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHH
Confidence            77888777777777999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (640)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (640)
                      ..|.++..+.+|++|++.|+++++.+|++.++...+..|...+
T Consensus       431 RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  431 RKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998888888887753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.2e-30  Score=296.10  Aligned_cols=270  Identities=16%  Similarity=0.086  Sum_probs=221.9

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH---------------------------
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRG---------------------------  422 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la---------------------------  422 (640)
                      +.++...+|.++..++.+|.++...|++++|+..|+++++.+|++..++..++                           
T Consensus       374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~  453 (1157)
T PRK11447        374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSID  453 (1157)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHH
Confidence            33444456677777777788888888888888888888877777766554444                           


Q ss_pred             ---------------HHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562          423 ---------------TARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (640)
Q Consensus       423 ---------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  487 (640)
                                     .++...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..+++++...|.++..++
T Consensus       454 ~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~  533 (1157)
T PRK11447        454 DIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVY  533 (1157)
T ss_pred             HHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence                           34445788888888888888888888888888888888889999999999888888888888877


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH----------------------------------------HHhCCCcHHHHHHHHHHH
Q 006562          488 ERGIVNFKFKDFNAAVEDLSAC----------------------------------------VKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~a----------------------------------------l~~~~~~~~~~~~la~~~  527 (640)
                      .++.++...+++++|+..++++                                        ++..|.++..+..+|.++
T Consensus       534 a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~  613 (1157)
T PRK11447        534 AYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWA  613 (1157)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            7777777777777776665432                                        234677888889999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (640)
                      ...|++++|+..|++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..
T Consensus       614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~  693 (1157)
T PRK11447        614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT  693 (1157)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCH------HHHHHHHHHHHHcCCccccc
Q 006562          608 LSSGLGIDPSNI------ECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       608 ~~~al~~~p~~~------~~~~~la~~~~~~g~~~~Al  639 (640)
                      |++++...|+++      .++..+|.++...|++++|+
T Consensus       694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~  731 (1157)
T PRK11447        694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL  731 (1157)
T ss_pred             HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            999998766543      45666799999999998886

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=2.5e-30  Score=295.69  Aligned_cols=253  Identities=15%  Similarity=0.078  Sum_probs=158.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-------
Q 006562          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR-------  459 (640)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------  459 (640)
                      .|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..++.++       
T Consensus       357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~  436 (1157)
T PRK11447        357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK  436 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence            3455555555555555555555555555555555555555555666666666665555555555554444332       


Q ss_pred             -----------------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006562          460 -----------------------------------AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE  504 (640)
Q Consensus       460 -----------------------------------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  504 (640)
                                                         ...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus       437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                                               123555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------H
Q 006562          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA----------------------------------------I  544 (640)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------------------~  544 (640)
                      .+++++...|+++..++.++..+...+++++|+..++++                                        +
T Consensus       517 ~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l  596 (1157)
T PRK11447        517 LMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL  596 (1157)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            555555555555555555555555555555555554432                                        1


Q ss_pred             ccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 006562          545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL  624 (640)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  624 (640)
                      ...|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|+..++++++..|+++.++..
T Consensus       597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~  676 (1157)
T PRK11447        597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRR  676 (1157)
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHH
Confidence            12344445566677777777777777777777777777777777777877777788888888887777777777777777


Q ss_pred             HHHHHHHcCCccccc
Q 006562          625 RASCYHAIGEYREAV  639 (640)
Q Consensus       625 la~~~~~~g~~~~Al  639 (640)
                      +|.++..+|++++|+
T Consensus       677 la~~~~~~g~~~eA~  691 (1157)
T PRK11447        677 VALAWAALGDTAAAQ  691 (1157)
T ss_pred             HHHHHHhCCCHHHHH
Confidence            777777777777764

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=100.00  E-value=1.3e-29  Score=271.26  Aligned_cols=329  Identities=10%  Similarity=0.021  Sum_probs=212.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccCch-hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~  123 (640)
                      .+.++|++.+|+..+...+...|++ ..++.++.+.+..|++++|+..+++++..+|+++.++..+|.++...|++++|+
T Consensus        51 ~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai  130 (656)
T PRK15174         51 ACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVA  130 (656)
T ss_pred             HHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Confidence            5689999999999999999999555 558899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (640)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (640)
                      ..|++++++.|..+..+..+..+..                                                       
T Consensus       131 ~~l~~Al~l~P~~~~a~~~la~~l~-------------------------------------------------------  155 (656)
T PRK15174        131 DLAEQAWLAFSGNSQIFALHLRTLV-------------------------------------------------------  155 (656)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHH-------------------------------------------------------
Confidence            9999997776655433221111100                                                       


Q ss_pred             CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (640)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (640)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (656)
T PRK15174        156 --------------------------------------------------------------------------------  155 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHHH
Q 006562          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK  363 (640)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  363 (640)
                                                                        ..++++++...+.                 
T Consensus       156 --------------------------------------------------~~g~~~eA~~~~~-----------------  168 (656)
T PRK15174        156 --------------------------------------------------LMDKELQAISLAR-----------------  168 (656)
T ss_pred             --------------------------------------------------HCCChHHHHHHHH-----------------
Confidence                                                              0111122211111                 


Q ss_pred             hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                              .+....|.++..+...+ .++..|++++|+..+++++..+|. .......++.++...|++++|+..+++++
T Consensus       169 --------~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al  239 (656)
T PRK15174        169 --------TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL  239 (656)
T ss_pred             --------HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                    11122333344333332 355566666666666666555432 22333344555566666666666666666


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 006562          443 QSNPSAGEAWKRRGQARAALGESVE----AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (640)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  518 (640)
                      ...|+++.++..+|.++...|++++    |+..|++++..+|++..++..+|.++...|++++|+..+++++..+|+++.
T Consensus       240 ~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        240 ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            6666666666666666666666653    566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      ++..+|.++...|++++|+..|++++..+|..+..+..+|.++...|++++|+..|+++++..|++
T Consensus       320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~  385 (656)
T PRK15174        320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH  385 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence            666666666666666666666666666666555555555566666666666666666666665554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=100.00  E-value=6.1e-29  Score=267.40  Aligned_cols=245  Identities=16%  Similarity=0.172  Sum_probs=214.0

Q ss_pred             hHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      .....+..++..+|.....++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++..
T Consensus       349 eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l  428 (615)
T TIGR00990       349 EALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL  428 (615)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            34445777788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH-----
Q 006562          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-----  519 (640)
Q Consensus       445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----  519 (640)
                      +|++..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++.+.|.....     
T Consensus       429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~  508 (615)
T TIGR00990       429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVL  508 (615)
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999875332     


Q ss_pred             -HHHHHHHHH-HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562          520 -YTYLGLALS-SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (640)
Q Consensus       520 -~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (640)
                       +...+..++ ..|++++|+..+++++..+|++..++..+|.++...|++++|+.+|++++++.+.....+        .
T Consensus       509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~  580 (615)
T TIGR00990       509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------Q  580 (615)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------H
Confidence             223333343 479999999999999999999999999999999999999999999999999987654422        2


Q ss_pred             cCCHHHHHHHHHHhhccCCC
Q 006562          598 LGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       598 ~g~~~~A~~~~~~al~~~p~  617 (640)
                      ...+.+|.....+..+..|.
T Consensus       581 a~~~~~a~~~~~~~~~~~~~  600 (615)
T TIGR00990       581 AISYAEATRTQIQVQEDYPV  600 (615)
T ss_pred             HHHHHHHHHHHHHHHHHhHH
Confidence            22444566655555554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.98  E-value=1.1e-28  Score=263.96  Aligned_cols=383  Identities=13%  Similarity=0.005  Sum_probs=322.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc----CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQS----YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~----~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g  117 (640)
                      .-..++++.||+.---+++.+-+..    .+......-+..+++.|++.+|+..++.++...|+++.+++.+|.+.+..|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g   90 (656)
T PRK15174         11 SPTTLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASS   90 (656)
T ss_pred             CchhhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcC
Confidence            3345677888877666666665554    222335667889999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (640)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (640)
                      ++++|+..|+++++++|+.+..+..+..+..                                                 
T Consensus        91 ~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~-------------------------------------------------  121 (656)
T PRK15174         91 QPDAVLQVVNKLLAVNVCQPEDVLLVASVLL-------------------------------------------------  121 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------------------------------------------------
Confidence            9999999999999988888665432211100                                                 


Q ss_pred             cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (640)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (640)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (656)
T PRK15174        122 --------------------------------------------------------------------------------  121 (656)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHH
Q 006562          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKE  357 (640)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  357 (640)
                                                                              ..++++.|+.              
T Consensus       122 --------------------------------------------------------~~g~~~~Ai~--------------  131 (656)
T PRK15174        122 --------------------------------------------------------KSKQYATVAD--------------  131 (656)
T ss_pred             --------------------------------------------------------HcCCHHHHHH--------------
Confidence                                                                    1112223322              


Q ss_pred             HHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 006562          358 TSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD  437 (640)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~  437 (640)
                                 .+.+.....|.++..+..+|.++...|++++|+..+++++...|+++.++..++ .+...|++++|+..
T Consensus       132 -----------~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~  199 (656)
T PRK15174        132 -----------LAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDL  199 (656)
T ss_pred             -----------HHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHH
Confidence                       233444567888999999999999999999999999999999999998887765 47889999999999


Q ss_pred             HHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHh
Q 006562          438 FTEAIQSNPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA----AVEDLSACVKL  512 (640)
Q Consensus       438 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~----A~~~~~~al~~  512 (640)
                      +++++...|. .......++.++...|++++|+..+++++...|+++.++..+|.++...|++++    |+..+++++..
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            9999998764 344555678899999999999999999999999999999999999999999986    89999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (640)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  592 (640)
                      +|++..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++...|..+..+..+|
T Consensus       280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a  359 (656)
T PRK15174        280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA  359 (656)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888889


Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCH-----HHHHHHHHHHHHcCCc
Q 006562          593 LLLHGLGQHKKAIKDLSSGLGIDPSNI-----ECLYLRASCYHAIGEY  635 (640)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~  635 (640)
                      .++...|++++|+..|+++++.+|++.     ++...+...+...+..
T Consensus       360 ~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~~~~~~~~  407 (656)
T PRK15174        360 AALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQISAVNLP  407 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHHHHhcCCc
Confidence            999999999999999999999998865     3444455555555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-28  Score=231.59  Aligned_cols=257  Identities=22%  Similarity=0.287  Sum_probs=229.7

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562          383 FRLSRGIAQVNEG---KYASAISIFDQILKED----PMY---------PEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (640)
Q Consensus       383 ~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~----~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (640)
                      ....-+..++..+   .|..|...+.+.....    ..+         ..++...|..++-.|++..|...|+.++.++|
T Consensus       278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~  357 (606)
T KOG0547|consen  278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP  357 (606)
T ss_pred             hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence            3333333444444   6788888777665421    112         67888899999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (640)
Q Consensus       447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (640)
                      .+...|..+|.+|...++.++-...|.++..++|+++++|+..|.+++-++++++|+..|+++++++|++...+..++.+
T Consensus       358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a  437 (606)
T KOG0547|consen  358 AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA  437 (606)
T ss_pred             ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHH-hcC
Q 006562          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLH-GLG  599 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~-~~g  599 (640)
                      .+++++++++...|+.+....|+.++++...|.++..++++++|++.|.+++++.|.      ++..+...|.+.. ..+
T Consensus       438 ~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~  517 (606)
T KOG0547|consen  438 LYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKE  517 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhh
Confidence            999999999999999999999999999999999999999999999999999999998      5555555555433 468


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          600 QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++..|+..+.++++++|....++..||.+..++|+.++||
T Consensus       518 d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAi  557 (606)
T KOG0547|consen  518 DINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAI  557 (606)
T ss_pred             hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999987

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.97  E-value=3.4e-28  Score=265.29  Aligned_cols=266  Identities=11%  Similarity=-0.040  Sum_probs=243.1

Q ss_pred             HhhhhccCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562          370 VTRISKSKSI--SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (640)
Q Consensus       370 ~~~~~~~~~~--~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (640)
                      +..+....|.  ++..++.+|.++.. +++.+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|.
T Consensus       464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~  541 (987)
T PRK09782        464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS  541 (987)
T ss_pred             HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence            3444556677  89999999999987 899999999999999999854 4777788888999999999999998877555


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      + ..+..+|.++...|++++|+.++++++...|.....+..++......|++++|+..++++++.+|+ +.++..+|.++
T Consensus       542 ~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l  619 (987)
T PRK09782        542 N-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIY  619 (987)
T ss_pred             c-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Confidence            4 557788999999999999999999999999998887777777777889999999999999999996 89999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (640)
                      ...|++++|+..|++++..+|+++.++.++|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..
T Consensus       620 ~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~  699 (987)
T PRK09782        620 RQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY  699 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |+++++++|++..+....|++.....+++.|.
T Consensus       700 l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~  731 (987)
T PRK09782        700 ARLVIDDIDNQALITPLTPEQNQQRFNFRRLH  731 (987)
T ss_pred             HHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999998888777653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1e-26  Score=236.89  Aligned_cols=459  Identities=15%  Similarity=0.142  Sum_probs=320.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHccc-Cchh---HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQS-YEIQ---DICNRAFCYSQLELHKHVIRDCDKALQLDPTL-LQAYILKGCAFSALGRK  119 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~---~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~-~~a~~~~g~~y~~~g~~  119 (640)
                      .||-.|||..+..++..+|... ..+.   .||..|++|..+|+|++|...|..+++.+|++ .-+++.+|+.|...|.+
T Consensus       279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl  358 (1018)
T KOG2002|consen  279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL  358 (1018)
T ss_pred             HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence            5679999999999999999877 3333   38999999999999999999999999999998 77999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHh--hhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (640)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (640)
                      ++|+.+|++.++..|+..+...-+..++.......  ..........+...                             
T Consensus       359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-----------------------------  409 (1018)
T KOG2002|consen  359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-----------------------------  409 (1018)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-----------------------------
Confidence            99999999999999988877665555544331000  00000000000000                             


Q ss_pred             cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (640)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (640)
                                                    .+..                                   +..+..+... 
T Consensus       410 ------------------------------~~~d-----------------------------------~~a~l~laql-  423 (1018)
T KOG2002|consen  410 ------------------------------TPVD-----------------------------------SEAWLELAQL-  423 (1018)
T ss_pred             ------------------------------cccc-----------------------------------HHHHHHHHHH-
Confidence                                          0000                                   0000000000 


Q ss_pred             CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCC--CchHHHHHhhHHHhhhh
Q 006562          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKS--SDSTESRSKLSFKWDML  355 (640)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~a~~~~~~~~~~~~~~  355 (640)
                           ...                ++....++.+..+              .......+..  .+.+..+..+....+..
T Consensus       424 -----~e~----------------~d~~~sL~~~~~A--------------~d~L~~~~~~ip~E~LNNvaslhf~~g~~  468 (1018)
T KOG2002|consen  424 -----LEQ----------------TDPWASLDAYGNA--------------LDILESKGKQIPPEVLNNVASLHFRLGNI  468 (1018)
T ss_pred             -----HHh----------------cChHHHHHHHHHH--------------HHHHHHcCCCCCHHHHHhHHHHHHHhcCh
Confidence                 000                0000000000000              0000112222  22222223333333333


Q ss_pred             HHHHHHHHhhHHHHHhhhhccC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 006562          356 KETSNEAKRNKKFCVTRISKSK--SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA  433 (640)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~  433 (640)
                      +.+..-.......+........  ..+....|++|.++-..+++..|.+.|..++..+|....++..+|......++..+
T Consensus       469 ~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~e  548 (1018)
T KOG2002|consen  469 EKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYE  548 (1018)
T ss_pred             HHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHH
Confidence            3333222222222121111111  23445677888888888888888888888888888888888888877777778888


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHh------------cCCH
Q 006562          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFK------------FKDF  499 (640)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~------------~~~~  499 (640)
                      |...+..++..+..+++++..+|.++....+|..|..-|...+....  .++.+...+|++++.            .+.+
T Consensus       549 a~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~  628 (1018)
T KOG2002|consen  549 ASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ  628 (1018)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence            88888888888888888888888888888888888877766665432  345566677776654            3457


Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562          500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (640)
Q Consensus       500 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (640)
                      ++|+..|.+++..+|.|..+-..+|.++...|++.+|...|.++.+...+++.+|.++|.||..+|+|..|++.|+.+++
T Consensus       629 ~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk  708 (1018)
T KOG2002|consen  629 EKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK  708 (1018)
T ss_pred             HHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999888777889999999999999999999999999997


Q ss_pred             hCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          580 IDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       580 ~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      ..-  +++.+...||.+++..|.+.+|..++.+++...|.++.+.+++|.+..+.+
T Consensus       709 kf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla  764 (1018)
T KOG2002|consen  709 KFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLA  764 (1018)
T ss_pred             HhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHH
Confidence            643  568899999999999999999999999999999999999999998887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.96  E-value=8.4e-26  Score=230.22  Aligned_cols=261  Identities=20%  Similarity=0.194  Sum_probs=235.0

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      .+.-.+.++.+|..+..+|+|++|..+|.++++.+|++ .-.++++|..|...|+++.|..+|+++++..|++.+....+
T Consensus       303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL  382 (1018)
T KOG2002|consen  303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL  382 (1018)
T ss_pred             hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            34457789999999999999999999999999999998 78899999999999999999999999999999999999999


Q ss_pred             HHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHH
Q 006562          456 GQARAALG----ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENKSAYTYLGLA  526 (640)
Q Consensus       456 a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~  526 (640)
                      |.+|...+    ..+.|..++.++++..|.+.++|..++.++....-+.. +..|..|+..     .+--++.+.++|..
T Consensus       383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvasl  461 (1018)
T KOG2002|consen  383 GCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASL  461 (1018)
T ss_pred             HhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence            99999886    67889999999999999999999999999877666555 9999988843     23457899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHcc-----Cccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          527 LSSIGEYKKAEEAHLKAIQL-----DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~-----~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      ++..|++.+|...|.++...     +++.     ....+++|.++...++++.|.+.|..++...|....++..+|.+..
T Consensus       462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~  541 (1018)
T KOG2002|consen  462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMAR  541 (1018)
T ss_pred             HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHH
Confidence            99999999999999999876     1221     3357999999999999999999999999999999999999998888


Q ss_pred             hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ..++..+|..++..++..+..++.+|..+|.++.....+..|
T Consensus       542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence            999999999999999999999999999999999887766544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.96  E-value=9.2e-26  Score=246.94  Aligned_cols=226  Identities=11%  Similarity=-0.018  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH--HHH-----HHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHH
Q 006562          398 ASAISIFDQILKEDPMYPEAL--IGR-----GTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAALGESVEAI  469 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~--~~l-----a~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~  469 (640)
                      ++|+..++.+++..|.++...  +..     ...+...|++++|+..|+++++..|..+ .+...+|.+|...|++++|+
T Consensus       213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~  292 (765)
T PRK10049        213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQ  292 (765)
T ss_pred             HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence            788999999997755544332  111     2234677999999999999998864422 34444689999999999999


Q ss_pred             HHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHc
Q 006562          470 QDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---------------NKSAYTYLGLALSSI  530 (640)
Q Consensus       470 ~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~  530 (640)
                      ..|++++...|.+    ......++.++...|++++|+..++++....|.               ...++..++.++...
T Consensus       293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~  372 (765)
T PRK10049        293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS  372 (765)
T ss_pred             HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence            9999999888765    356677788889999999999999999988763               135677899999999


Q ss_pred             CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (640)
Q Consensus       531 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (640)
                      |++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++|...+++
T Consensus       373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~  452 (765)
T PRK10049        373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDD  452 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCHHHHH
Q 006562          611 GLGIDPSNIECLY  623 (640)
Q Consensus       611 al~~~p~~~~~~~  623 (640)
                      +++..|+++.+..
T Consensus       453 ll~~~Pd~~~~~~  465 (765)
T PRK10049        453 VVAREPQDPGVQR  465 (765)
T ss_pred             HHHhCCCCHHHHH
Confidence            9999999986554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-26  Score=228.58  Aligned_cols=297  Identities=16%  Similarity=0.174  Sum_probs=241.3

Q ss_pred             HHHHhhHHHhhhhHHHHHHHH-hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562          343 ESRSKLSFKWDMLKETSNEAK-RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR  421 (640)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l  421 (640)
                      ..+..+...++.......... ..+.-.+..+....+....++..+|..|+..++|++|..+|+.+-+..|-..+..-..
T Consensus       314 ~~l~~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiy  393 (638)
T KOG1126|consen  314 SELMELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIY  393 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHH
Confidence            334444444444433333333 3333445556667777788999999999999999999999999999988877777777


Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (640)
                      ..+++.+.+--+--.+.+..+..+|+.|+.|..+|.+|..+++++.|+++|+++++++|....+|..+|.-+....+++.
T Consensus       394 ST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~  473 (638)
T KOG1126|consen  394 STTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDK  473 (638)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHh
Confidence            77777777766666666777888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562          502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (640)
Q Consensus       502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  581 (640)
                      |..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.+......+|.++.++|+.++|+.+|++|+.++
T Consensus       474 a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  474 AMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             HHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |.++...+..|.++...+++++|+..+++..++.|++..+++.+|.+|.++|+.+.|+
T Consensus       554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al  611 (638)
T KOG1126|consen  554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL  611 (638)
T ss_pred             CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence            8888888888888888888888888888888888888888888888888888887775

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.95  E-value=7.5e-25  Score=239.80  Aligned_cols=384  Identities=13%  Similarity=0.039  Sum_probs=279.8

Q ss_pred             HHHHH-HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562           40 RIELA-KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (640)
Q Consensus        40 ~~~~~-~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g  117 (640)
                      ...++ .+...|++++|+..|++++... .++.++..+|.++...|++++|+..++++++.+|++.. ++.+|.++...|
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            44455 4468899999999999999998 45667889999999999999999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCc
Q 006562          118 RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDI  197 (640)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (640)
                      ++++|+..|++++++.|+.+..+..+..+.........++     ..                                 
T Consensus       131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al-----~~---------------------------------  172 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL-----GA---------------------------------  172 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH-----HH---------------------------------
Confidence            9999999999999999988766543322221110000000     00                                 


Q ss_pred             cccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhcccc
Q 006562          198 CDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQS  277 (640)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (640)
                                   ..+....|+                 ....+                                    
T Consensus       173 -------------l~~~~~~p~-----------------~~~~l------------------------------------  186 (765)
T PRK10049        173 -------------IDDANLTPA-----------------EKRDL------------------------------------  186 (765)
T ss_pred             -------------HHhCCCCHH-----------------HHHHH------------------------------------
Confidence                         000000000                 00000                                    


Q ss_pred             CCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhH-
Q 006562          278 SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK-  356 (640)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-  356 (640)
                                                                                 ....... ..++........ 
T Consensus       187 -----------------------------------------------------------~~~~~~~-~~r~~~~~~~~~~  206 (765)
T PRK10049        187 -----------------------------------------------------------EADAAAE-LVRLSFMPTRSEK  206 (765)
T ss_pred             -----------------------------------------------------------HHHHHHH-HHHhhcccccChh
Confidence                                                                       0000000 000000000000 


Q ss_pred             HHHHHHHhhHHHHHhhhh---ccCccc----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q 006562          357 ETSNEAKRNKKFCVTRIS---KSKSIS----VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQ  428 (640)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~  428 (640)
                      .... ........++.+.   ..+|..    ....+.....++..|++++|+..|+++++..|.. ..+...+|.+|...
T Consensus       207 ~r~~-~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~  285 (765)
T PRK10049        207 ERYA-IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL  285 (765)
T ss_pred             HHHH-HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence            0000 0001111222222   222222    2233332334578899999999999999886442 23445579999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Q 006562          429 RELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHER  489 (640)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l  489 (640)
                      |++++|+..|+++++..|.+    ......++.++...|++++|+..++++....|..               ..++..+
T Consensus       286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~  365 (765)
T PRK10049        286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL  365 (765)
T ss_pred             CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence            99999999999999988766    3566778888899999999999999999987631               3467889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  569 (640)
                      +.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|++..+++.+|.++...|++++
T Consensus       366 a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~  445 (765)
T PRK10049        366 SQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQ  445 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHH
Q 006562          570 ALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~  589 (640)
                      |...++++++..|+++.+..
T Consensus       446 A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        446 MDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HHHHHHHHHHhCCCCHHHHH
Confidence            99999999999999986544

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.95  E-value=8.9e-25  Score=197.27  Aligned_cols=322  Identities=16%  Similarity=0.207  Sum_probs=253.2

Q ss_pred             HHHH-HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562           41 IELA-KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (640)
Q Consensus        41 ~~~~-~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~  118 (640)
                      ..++ +++..|+|..|+..|-.||+.+ .+..+++.||-+|+.+|+-..|+.+++++|++.|++..|...+|.+++++|+
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhccc
Confidence            4444 7789999999999999999999 5668899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcc
Q 006562          119 KEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC  198 (640)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (640)
                      +++|+..|.+.|..+|++....                                                          
T Consensus       122 le~A~~DF~~vl~~~~s~~~~~----------------------------------------------------------  143 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPSNGLVL----------------------------------------------------------  143 (504)
T ss_pred             HHHHHHHHHHHHhcCCCcchhH----------------------------------------------------------
Confidence            9999999999976665432110                                                          


Q ss_pred             ccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccC
Q 006562          199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS  278 (640)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (640)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (504)
T KOG0624|consen  144 --------------------------------------------------------------------------------  143 (504)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHH
Q 006562          279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET  358 (640)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  358 (640)
                                                                                   ++..-+..+..        
T Consensus       144 -------------------------------------------------------------eaqskl~~~~e--------  154 (504)
T KOG0624|consen  144 -------------------------------------------------------------EAQSKLALIQE--------  154 (504)
T ss_pred             -------------------------------------------------------------HHHHHHHhHHH--------
Confidence                                                                         00000000000        


Q ss_pred             HHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 006562          359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF  438 (640)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (640)
                                            ...+......++..|++..|+.....+++..|-++..+...+.||...|+...|+..+
T Consensus       155 ----------------------~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dl  212 (504)
T KOG0624|consen  155 ----------------------HWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDL  212 (504)
T ss_pred             ----------------------HHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence                                  1122334455667788888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHhcCCHHHHHHHH
Q 006562          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE------------RGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~------------la~~~~~~~~~~~A~~~~  506 (640)
                      +.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.            -+.-....++|.++++..
T Consensus       213 k~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~g  292 (504)
T KOG0624|consen  213 KQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAG  292 (504)
T ss_pred             HHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            88888888888888888888888888888888888888888877443221            133445667888888888


Q ss_pred             HHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562          507 SACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (640)
Q Consensus       507 ~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (640)
                      ++.++.+|..+.    ....+..++...+++.+|++.+.+++..+|++..++...+..|+....|+.|+.-|+++.+.++
T Consensus       293 e~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  293 EKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             HHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            888888887443    3445677788888888888888888888888888888888888888888888888888888888


Q ss_pred             CChHHHHHH
Q 006562          583 RFSKAYHLR  591 (640)
Q Consensus       583 ~~~~~~~~l  591 (640)
                      ++..+...+
T Consensus       373 sn~~~reGl  381 (504)
T KOG0624|consen  373 SNTRAREGL  381 (504)
T ss_pred             ccHHHHHHH
Confidence            776654433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.8e-25  Score=218.65  Aligned_cols=217  Identities=24%  Similarity=0.283  Sum_probs=179.9

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562          404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       404 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  483 (640)
                      .+..+..+|+.|+.|..+|.||..+++++.|+++|+++++++|....+|..+|.-+.....++.|..+|+.++..+|.+.
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY  489 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY  489 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh
Confidence            34566778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  563 (640)
                      .+|+.+|.+|.++++++.|.-+|++|++++|.+......+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       564 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      .+++++|+..+++..+..|+...+++.+|.+|.++|+.+.|+..|.-|..++|.-..
T Consensus       570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            888888888888888888888888888888888888888888888888888876433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.94  E-value=1.1e-24  Score=203.68  Aligned_cols=240  Identities=22%  Similarity=0.208  Sum_probs=220.1

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK  474 (640)
Q Consensus       395 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  474 (640)
                      .++..|..+.+.++..+..++.++.+.|.+.+..|++++|.+.|++++..+.....+++.+|..+..+|+.++|+.+|-+
T Consensus       470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k  549 (840)
T KOG2003|consen  470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK  549 (840)
T ss_pred             cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999998888889999999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH
Q 006562          475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW  554 (640)
Q Consensus       475 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  554 (640)
                      +-.+--++.++++.++.+|..+.+..+|++++.++..+-|+++.++..+|.+|-+.|+..+|.+++-...+..|.+.+..
T Consensus       550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~i  629 (840)
T KOG2003|consen  550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETI  629 (840)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHH
Confidence            88888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      .++|..|....-+++|+.+|+++--+.|.........+.|+.+.|+|++|.+.|+..-...|.+.+.+..|..+.-.+|-
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            99999999999999999999999888998888888999999999999999999999999999999888888877766653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=1.1e-23  Score=230.11  Aligned_cols=252  Identities=16%  Similarity=0.095  Sum_probs=222.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      .+.+|..+...|++++|+..|+++....|. ...++.+|.++...|++++|+.+++++++..|.+...+..++......|
T Consensus       512 ~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G  590 (987)
T PRK09782        512 HRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG  590 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC
Confidence            334566777899999999999998776555 4557888999999999999999999999999888877777777777779


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (640)
                      ++++|+..++++++.+|+ ..++..+|.++...|++++|+..|++++.++|+++.++..+|.++...|++++|+..|+++
T Consensus       591 r~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A  669 (987)
T PRK09782        591 QPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA  669 (987)
T ss_pred             CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            999999999999999996 8889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       544 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      +..+|+++.++.++|.++...|++++|+..|++++...|+...+....|.+.....+++.|.+.+.++..++|... +..
T Consensus       670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~  748 (987)
T PRK09782        670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGL  748 (987)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999877 777


Q ss_pred             HHHHHHHHcCCcccc
Q 006562          624 LRASCYHAIGEYREA  638 (640)
Q Consensus       624 ~la~~~~~~g~~~~A  638 (640)
                      ..|.++...+++-.+
T Consensus       749 ~~g~~~~~~~~~~~~  763 (987)
T PRK09782        749 RSGAMSTANNNVGGA  763 (987)
T ss_pred             ccchHhhhcccccCC
Confidence            888888888776443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=8.8e-24  Score=203.64  Aligned_cols=261  Identities=18%  Similarity=0.208  Sum_probs=230.8

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      .+.+...+|.+...+...--++...|+..+-..+-.+.++..|+.+..|+..|..|...|++.+|..+|.++..++|..+
T Consensus       267 t~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg  346 (611)
T KOG1173|consen  267 TEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG  346 (611)
T ss_pred             hHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence            44556677777766654444888888888888888888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (640)
                      .+|...|..+...|..++|+..|..|-++.|..-.....+|.-|..++++..|.++|.+++.+.|.++-++..+|.+.+.
T Consensus       347 paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~  426 (611)
T KOG1173|consen  347 PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT  426 (611)
T ss_pred             HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh
Confidence            99999999999999999999999999999998888888899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHccCc----c---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          530 IGEYKKAEEAHLKAIQLDR----N---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      .+.|.+|..+|+.++..-+    .   ....+.++|.++.+++.+++|+.++++++.+.|.++.++..+|.+|..+|+++
T Consensus       427 ~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld  506 (611)
T KOG1173|consen  427 YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLD  506 (611)
T ss_pred             HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChH
Confidence            9999999999999984322    1   24567899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562          603 KAIKDLSSGLGIDPSNIECLYLRASCYH  630 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (640)
                      .|+++|.+++.+.|++..+-..|+.+..
T Consensus       507 ~Aid~fhKaL~l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  507 KAIDHFHKALALKPDNIFISELLKLAIE  534 (611)
T ss_pred             HHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            9999999999999999766666665543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.94  E-value=4.8e-23  Score=210.91  Aligned_cols=231  Identities=19%  Similarity=0.107  Sum_probs=204.9

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----HHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----EAWKRRG  456 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la  456 (640)
                      ..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++..|.+.     ..+..+|
T Consensus       108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la  187 (389)
T PRK11788        108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999887653     3566789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKK  535 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~  535 (640)
                      .++...|++++|+..|+++++..|....++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|++++
T Consensus       188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999999999999999999998876 4667889999999999999


Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHhhc
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLG  613 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~  613 (640)
                      |+..+++++...|+... +..++.++...|++++|+..++++++..|++......++.....  .|+..+|+..+++.++
T Consensus       268 A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        268 GLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             HHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            99999999999998754 48899999999999999999999999999887665555544422  5688888888877663

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-22  Score=190.04  Aligned_cols=263  Identities=18%  Similarity=0.189  Sum_probs=243.6

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      ..|.+.-.-...|.+.+.+.|+++|+..|+.+.+.+|-...-.-....+++-..+-.+-.-..+.+..++.-.++....+
T Consensus       257 gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiI  336 (559)
T KOG1155|consen  257 GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCII  336 (559)
T ss_pred             cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeee
Confidence            36777777788899999999999999999999999998877777778888877776666667777888888888889999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  535 (640)
                      |+.|...++.++|+.+|+++++++|....+|..+|.-|..+.+...|+..|++|++++|.+..+|+.+|++|..++...=
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~Y  416 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFY  416 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc--
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG--  613 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--  613 (640)
                      |+-+|+++...-|+++..|..+|.+|.+.++.++|+.+|.+++........++..+|.+|.++++..+|..+|++.++  
T Consensus       417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999888889999999999999999999999999987  


Q ss_pred             -----cCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          614 -----IDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       614 -----~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                           ..|....+...|+.-+.+.+++++|
T Consensus       497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A  526 (559)
T KOG1155|consen  497 ELEGEIDDETIKARLFLAEYFKKMKDFDEA  526 (559)
T ss_pred             HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence                 4565667888899999999999987

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.92  E-value=5.9e-22  Score=179.17  Aligned_cols=244  Identities=20%  Similarity=0.252  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---------------EALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      ...+|.+++.+|++++|...|+.+++.+|++.               +.+......++..|++..|+.+....+++.|.+
T Consensus       109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wd  188 (504)
T KOG0624|consen  109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWD  188 (504)
T ss_pred             HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcch
Confidence            34568889999999999999999999998642               223334455667799999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH------
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY------  522 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------  522 (640)
                      +..+...+.||...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....+-.      
T Consensus       189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK  268 (504)
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999987543221      


Q ss_pred             ------HHHHHHHcCCHHHHHHHHHHHHccCcccHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562          523 ------LGLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (640)
Q Consensus       523 ------la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  592 (640)
                            -+......++|.+++...++.++.+|..+.    ....+..|+..-|++.+|+..+.+++..+|++..++...|
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA  348 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA  348 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence                  234456678999999999999999998543    4456778888899999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562          593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (640)
                      .+|.-...|+.|+..|+++.+.++++..+...+-.
T Consensus       349 eA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~  383 (504)
T KOG0624|consen  349 EAYLGDEMYDDAIHDYEKALELNESNTRAREGLER  383 (504)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence            99999999999999999999999999877655543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=2.5e-22  Score=205.60  Aligned_cols=273  Identities=20%  Similarity=0.125  Sum_probs=217.7

Q ss_pred             HHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 006562          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEA  441 (640)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (640)
                      ....+.++...+|.++..++.+|..+...|++++|+..+++++...+..    ..++..+|.++...|++++|+..|.++
T Consensus        54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~  133 (389)
T PRK11788         54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL  133 (389)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4444666777788888888888888888899999998888888753322    356788888888889999999999988


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      ++..|.+..++..++.++...|++++|+..+++++...|.+.     ..+..+|.++...|++++|+..++++++..|++
T Consensus       134 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  213 (389)
T PRK11788        134 VDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQC  213 (389)
T ss_pred             HcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC
Confidence            888888888888888888888999999999888888877653     245677888888889999999999988888888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (640)
                      ..++..+|.++...|++++|+..+++++..+|.+ ..++..++.+|...|++++|+..+++++...|+... +..++.++
T Consensus       214 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~  292 (389)
T PRK11788        214 VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLL  292 (389)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHH
Confidence            8888888888888999999999999888887765 456778888888889999999999888888887644 47888888


Q ss_pred             HhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--cCCccccc
Q 006562          596 HGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--IGEYREAV  639 (640)
Q Consensus       596 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~Al  639 (640)
                      ...|++++|+..++++++..|++......++..+..  .|+..+|+
T Consensus       293 ~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~  338 (389)
T PRK11788        293 EEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL  338 (389)
T ss_pred             HHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence            888999999999988888888876555444433322  34555553

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.92  E-value=4.9e-22  Score=186.00  Aligned_cols=263  Identities=16%  Similarity=0.190  Sum_probs=239.0

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQ--RELEAAISDFTEAIQSNPSAGEAWK  453 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~  453 (640)
                      .+...+.-+.++..++++|+++.|++++.-.-+.+... ..+-.++..+++.+  .++..|..+...++..+.-++.++.
T Consensus       415 ~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~  494 (840)
T KOG2003|consen  415 AELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALT  494 (840)
T ss_pred             hhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhh
Confidence            34455677888999999999999999987655554432 33445566666654  4789999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (640)
                      ..|.+-+..|++++|.+.|+.++..+....++++++|..+..+|+.++|+.+|-+.-.+-.++..+++.++.+|..+.+.
T Consensus       495 nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~  574 (840)
T KOG2003|consen  495 NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDP  574 (840)
T ss_pred             cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCH
Confidence            99999999999999999999999998888999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      .+|++++.++..+-|++|.++..+|.+|-+.|+-.+|.+++-...+..|.+.+....+|..|....-+++|+.+|+++--
T Consensus       575 aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal  654 (840)
T KOG2003|consen  575 AQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL  654 (840)
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          614 IDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +.|+........+.|+.+.|+|..|+
T Consensus       655 iqp~~~kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  655 IQPNQSKWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             cCccHHHHHHHHHHHHHhcccHHHHH
Confidence            99998888899999999999999885

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.91  E-value=7.9e-20  Score=196.12  Aligned_cols=424  Identities=9%  Similarity=-0.020  Sum_probs=246.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcccCchh-HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562           38 TARIELAKLCSLRNWSKAIRILDSLLAQSYEIQ-DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (640)
Q Consensus        38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~-~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~  116 (640)
                      ..+...-..+++|+|..|+..|.++++.+|+.. .....+..+...|++++|+..|++++..+|....+...+|.+|..+
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~  115 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNE  115 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence            444555567999999999999999999997763 3338888899999999999999999943444444444448899999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCC
Q 006562          117 GRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD  196 (640)
Q Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (640)
                      |++++|+..|+++++..|+.+..+..+..+.-........+     ..                                
T Consensus       116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl-----~~--------------------------------  158 (822)
T PRK14574        116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVL-----KQ--------------------------------  158 (822)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHH-----HH--------------------------------
Confidence            99999999999999999998766543222111111110111     00                                


Q ss_pred             ccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccc
Q 006562          197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ  276 (640)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (640)
                                                              ..                                      
T Consensus       159 ----------------------------------------l~--------------------------------------  160 (822)
T PRK14574        159 ----------------------------------------AT--------------------------------------  160 (822)
T ss_pred             ----------------------------------------HH--------------------------------------
Confidence                                                    00                                      


Q ss_pred             cCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhH
Q 006562          277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK  356 (640)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  356 (640)
                                                                            ..+. ..+. ....+..+....+   
T Consensus       161 ------------------------------------------------------~l~~-~dp~-~~~~l~layL~~~---  181 (822)
T PRK14574        161 ------------------------------------------------------ELAE-RDPT-VQNYMTLSYLNRA---  181 (822)
T ss_pred             ------------------------------------------------------Hhcc-cCcc-hHHHHHHHHHHHh---
Confidence                                                                  0000 0000 0000000000000   


Q ss_pred             HHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHc------
Q 006562          357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIG--RGTARAFQ------  428 (640)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~--la~~~~~~------  428 (640)
                        .... ......++++....|.+.+.+..+...+...|-...|.+...+--.........++.  .+.-..+.      
T Consensus       182 --~~~~-~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~  258 (822)
T PRK14574        182 --TDRN-YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR  258 (822)
T ss_pred             --cchH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc
Confidence              0000 113335677788888888888888888888887777776555422111110111110  01001100      


Q ss_pred             ---c---CHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Q 006562          429 ---R---ELEAAISDFTEAIQSNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNF  494 (640)
Q Consensus       429 ---g---~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~  494 (640)
                         +   -.+.|+..++..+...+..+       .+..-.-.++...+++.+++..|+.+.... |-...+....|..|+
T Consensus       259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl  338 (822)
T PRK14574        259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI  338 (822)
T ss_pred             cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence               1   12334555555554222211       122233344555666666666666655443 223345556666666


Q ss_pred             hcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc---------------ccHHH
Q 006562          495 KFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------------NFLEA  553 (640)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---------------~~~~~  553 (640)
                      ..++.++|+..|++++...|      .+......|-.++...+++++|..++++.....|               +....
T Consensus       339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~  418 (822)
T PRK14574        339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG  418 (822)
T ss_pred             hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence            66666777666666665432      1222234556666666666666666666655322               22445


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       554 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      ...++.++...|++.+|.+.+++.+...|.++..+..+|.++...|.+.+|...++.+..++|++..+...++.++..+|
T Consensus       419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~  498 (822)
T PRK14574        419 QTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQ  498 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhh
Confidence            55666666666667777776666666666666666666666666677777766666666666666666666666666666


Q ss_pred             Ccccc
Q 006562          634 EYREA  638 (640)
Q Consensus       634 ~~~~A  638 (640)
                      ++.+|
T Consensus       499 e~~~A  503 (822)
T PRK14574        499 EWHQM  503 (822)
T ss_pred             hHHHH
Confidence            66655

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=2.1e-20  Score=175.99  Aligned_cols=262  Identities=16%  Similarity=0.137  Sum_probs=223.8

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      .++.+.+++|-..+-.-....+++-..+-.+---+.+.+..++.-.++....+|..|...++.++|+.+|+++++++|..
T Consensus       284 ~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~  363 (559)
T KOG1155|consen  284 VFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY  363 (559)
T ss_pred             HHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch
Confidence            34555666777766666666677766665555555667777888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      ..+|..+|.-|..+.+...|+..|++|++++|.+-.+|+.+|+.|..++...=|+-+|+++...-|+++..|..+|.+|.
T Consensus       364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~  443 (559)
T KOG1155|consen  364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE  443 (559)
T ss_pred             hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHhcCCH
Q 006562          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKAYHLRGLLLHGLGQH  601 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~g~~  601 (640)
                      ++++.++|+++|.+++........++..+|.+|.++++..+|..+|++.++.       .|....+...++..+.+.+++
T Consensus       444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~  523 (559)
T KOG1155|consen  444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDF  523 (559)
T ss_pred             HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcch
Confidence            9999999999999999988888899999999999999999999999999873       344556777799999999999


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562          602 KKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (640)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (640)
                      ++|-.+...++..++...++...+-.+..
T Consensus       524 ~~As~Ya~~~~~~~~e~eeak~LlReir~  552 (559)
T KOG1155|consen  524 DEASYYATLVLKGETECEEAKALLREIRK  552 (559)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            99999999998887666565555444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.5e-20  Score=181.44  Aligned_cols=259  Identities=17%  Similarity=0.155  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ++.....+..++..++|.+..++++..++.+|-++.++-..--++...|+..+-...-.+.++..|+.+-.|+..|..|.
T Consensus       244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl  323 (611)
T KOG1173|consen  244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL  323 (611)
T ss_pred             HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence            55566666677777777777777777777777666555444446667777666666666677777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (640)
                      ..|++.+|..+|.++..++|....+|...|..+...|..++|+..|..|-++.|........+|.-|..+++++-|.++|
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777766666666777777777777777777


Q ss_pred             HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----C---ChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----R---FSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       541 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      .+|+.+.|.+|-++..+|.+.+..+.|.+|..+|+.++..-+    .   ....+.++|.++.+++.+++|+.+|++++.
T Consensus       404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777663221    1   223466677777777777777777777777


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          614 IDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +.|.++.++-.+|.+|..+|+++.|+
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Ai  509 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAI  509 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHH
Confidence            77777777777777777777776664

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.90  E-value=3e-20  Score=188.94  Aligned_cols=66  Identities=17%  Similarity=0.098  Sum_probs=55.6

Q ss_pred             HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 006562           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (640)
Q Consensus        72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~  137 (640)
                      +...|+..+-.|++++|+..|..+|+++|.++.+|+.+|.+|.++|+.+.|..++-.|-.+.|...
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~  207 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY  207 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh
Confidence            566777777779999999999999999999999999999999999999999988888844444443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.90  E-value=2.7e-23  Score=201.27  Aligned_cols=255  Identities=20%  Similarity=0.223  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ..+.+|..++..|++++|++.+.+.+..  .|+++..|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus        10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~   88 (280)
T PF13429_consen   10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            3346699999999999999999766544  488899999999999999999999999999999999988888888888 7


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      ..+++++|+.++.++.+..+ ++..+.....++...++++++...+.++....  +.++..+..+|.++...|++++|+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999988764 56777788888999999999999999987655  6788999999999999999999999


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      .+++++..+|+++.+...++.++...|+++++...+.......|.++..+..+|.++..+|++++|+.+|++++..+|++
T Consensus       168 ~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d  247 (280)
T PF13429_consen  168 DYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD  247 (280)
T ss_dssp             HHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCccccc
Q 006562          619 IECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +..+..+|.++...|++++|+
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             HHHHHHHHHHHT---------
T ss_pred             ccccccccccccccccccccc
Confidence            999999999999999999986

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.89  E-value=2.8e-20  Score=167.34  Aligned_cols=246  Identities=14%  Similarity=0.121  Sum_probs=232.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (640)
                      .....+|.+|+..|-+.+|.+.++..++..|. ++.+..++.+|....+...|+..+.+.++..|.+...+..+++++..
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence            34467899999999999999999999998775 89999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (640)
                      ++++++|.++|+.+++.+|.+.++...+|.-|+..++.+-|+.+|++.+.+.-.+++.+.++|.+.+..++++-++..|+
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHccCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          542 KAIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       542 ~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      +++....+   -.++|+++|.+....|++..|...|+-++..++++.+++.++|.+-.+.|+.++|..++..+-...|+-
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m  462 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM  462 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence            99987542   378999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 006562          619 IECLYLRASC  628 (640)
Q Consensus       619 ~~~~~~la~~  628 (640)
                      .+..++++.+
T Consensus       463 ~E~~~Nl~~~  472 (478)
T KOG1129|consen  463 AEVTTNLQFM  472 (478)
T ss_pred             cccccceeEE
Confidence            8777776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.89  E-value=2.7e-20  Score=196.62  Aligned_cols=256  Identities=14%  Similarity=0.014  Sum_probs=218.8

Q ss_pred             HHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHhCCCc
Q 006562          381 VDFRLSRGIAQVNE---GKYASAISIFDQILKEDPMYPEALIGRGTARAFQR---------ELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       381 ~~~~~~~a~~~~~~---g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~  448 (640)
                      ...++..|...+..   +++++|+..|+++++.+|+++.++..+|.++...+         ++++|+..++++++.+|++
T Consensus       258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~  337 (553)
T PRK12370        258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNN  337 (553)
T ss_pred             HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCC
Confidence            33456667655443   45789999999999999999999999999887543         4899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      +.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.++.
T Consensus       338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~  417 (553)
T PRK12370        338 PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888777787888


Q ss_pred             HcCCHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562          529 SIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (640)
                      ..|++++|+..+++++... |+++..+..+|.++...|++++|...+.+.....|....++..++..|...|+  +|...
T Consensus       418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~a~~~  495 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE--RALPT  495 (553)
T ss_pred             hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH--HHHHH
Confidence            8999999999999999875 78899999999999999999999999999988888888899999999998884  77777


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      +++.++.....+.-....+.+|.-.|+.+.|
T Consensus       496 l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~  526 (553)
T PRK12370        496 IREFLESEQRIDNNPGLLPLVLVAHGEAIAE  526 (553)
T ss_pred             HHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence            7776654322222222255666656555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.88  E-value=7.2e-19  Score=179.01  Aligned_cols=349  Identities=18%  Similarity=0.161  Sum_probs=274.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~  123 (640)
                      -+|..||+++|+..+.++|.++ .++.+|+.+|.+|.++|+.++|+...-.|--++|++.+-|.+++....++|++.+|.
T Consensus       148 ~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~  227 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQAR  227 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence            5588999999999999999999 566779999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccC
Q 006562          124 SVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQ  203 (640)
Q Consensus       124 ~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (640)
                      -+|.+|++..|.                                                                    
T Consensus       228 ~cy~rAI~~~p~--------------------------------------------------------------------  239 (895)
T KOG2076|consen  228 YCYSRAIQANPS--------------------------------------------------------------------  239 (895)
T ss_pred             HHHHHHHhcCCc--------------------------------------------------------------------
Confidence            999999543332                                                                    


Q ss_pred             CccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccc
Q 006562          204 SRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDI  283 (640)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (640)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (895)
T KOG2076|consen  240 --------------------------------------------------------------------------------  239 (895)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHHH
Q 006562          284 CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAK  363 (640)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  363 (640)
                                                                                                      
T Consensus       240 --------------------------------------------------------------------------------  239 (895)
T KOG2076|consen  240 --------------------------------------------------------------------------------  239 (895)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHH
Q 006562          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDF  438 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~  438 (640)
                                      +....+.++..+.+.|+...|...|.+++...|..     .......+..+...++-+.|++.+
T Consensus       240 ----------------n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  240 ----------------NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             ----------------chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence                            13344556778888899999999999999988832     122334466777777778899999


Q ss_pred             HHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------CHHH-HH
Q 006562          439 TEAIQSNP--SAGEAWKRRGQARAALGESVEAIQDLSKALEF--EPN--------------------------SADI-LH  487 (640)
Q Consensus       439 ~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~--------------------------~~~~-~~  487 (640)
                      +.++....  ...+.+..++.++....+++.|..........  .++                          +..+ ..
T Consensus       304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl  383 (895)
T KOG2076|consen  304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRL  383 (895)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhH
Confidence            88887322  23345667888888888898888877665541  000                          1122 45


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-cHHHHHHHHHHHHHhc
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-FLEAWGHLTQFYQDLA  565 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g  565 (640)
                      .++.+..+.++..+++..+..--...| +++..++.++.++...|++.+|+.+|..+....+. +..+|+.+|.+|..+|
T Consensus       384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~  463 (895)
T KOG2076|consen  384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG  463 (895)
T ss_pred             hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence            555555666666666665544333223 35788999999999999999999999998877554 3678999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---------HHHHHHHHHHHHHcCCcc
Q 006562          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---------IECLYLRASCYHAIGEYR  636 (640)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~  636 (640)
                      .++.|+..|++++...|++..+...++.++.++|++++|.+.+.....-++.+         ......+..++...|+.+
T Consensus       464 e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E  543 (895)
T KOG2076|consen  464 EYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE  543 (895)
T ss_pred             hHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999998876433222         245677788888888766


Q ss_pred             c
Q 006562          637 E  637 (640)
Q Consensus       637 ~  637 (640)
                      +
T Consensus       544 ~  544 (895)
T KOG2076|consen  544 E  544 (895)
T ss_pred             H
Confidence            4

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.87  E-value=9.3e-19  Score=175.23  Aligned_cols=273  Identities=14%  Similarity=0.108  Sum_probs=170.5

Q ss_pred             HHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          366 KKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      .-..++++...+|.++...+.++..|...++.+.|..+.+++++. ..+++.+|..+|.++...+++.+|+...+.++..
T Consensus       463 slqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  463 SLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            334677888899999999999999999999999999999999999 5567999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHh---
Q 006562          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL---------HERGIVNFKFKDFNAAVEDLSACVKL---  512 (640)
Q Consensus       445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~~~~~~~A~~~~~~al~~---  512 (640)
                      .|+|.........+-...++.++|+..+...+.+......+.         ...+......++..+|++..+++...   
T Consensus       543 ~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~  622 (799)
T KOG4162|consen  543 FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS  622 (799)
T ss_pred             hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence            998766666666666667777777776666555432111111         11111111222333333333322211   


Q ss_pred             -----C-----C--------Cc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH
Q 006562          513 -----D-----K--------EN-----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (640)
Q Consensus       513 -----~-----~--------~~-----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  569 (640)
                           .     |        ..     ...|...+..+...++.++|..++.++-.++|..+..|+..|.++...|.+.+
T Consensus       623 ~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~E  702 (799)
T KOG4162|consen  623 QLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEE  702 (799)
T ss_pred             hhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHH
Confidence                 0     0        00     12344445555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH--HHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK--DLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      |.+.|..++.++|+++.....+|.++.+.|+..-|..  .+..+++++|.++++|+.+|.++.++|+.++|
T Consensus       703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            5555555555555555555555555555555544444  55555555555555555555555555555544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.87  E-value=2e-18  Score=169.02  Aligned_cols=266  Identities=15%  Similarity=0.081  Sum_probs=248.2

Q ss_pred             HHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (640)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (640)
                      -.+.++....|.....|+..+..+...|+...|..++.++++.+|++.++|+....+.....+++.|..+|.++....| 
T Consensus       571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-  649 (913)
T KOG0495|consen  571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-  649 (913)
T ss_pred             HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-
Confidence            3467778888999999999999999999999999999999999999999999999999999999999999999988766 


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      ...+|+.-+.+...+++.++|+..++++++..|.....|..+|.++.++++.+.|...|...++..|..+..|..++.+-
T Consensus       650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakle  729 (913)
T KOG0495|consen  650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLE  729 (913)
T ss_pred             cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHH
Confidence            56788888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------------------------
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR------------------------  583 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------------  583 (640)
                      ...|..-.|...++++.-.+|.+...|....+.-.+.|+.+.|...+.++++..|+                        
T Consensus       730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA  809 (913)
T KOG0495|consen  730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA  809 (913)
T ss_pred             HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999888774                        


Q ss_pred             ------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          584 ------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       584 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                            ++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.
T Consensus       810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~  866 (913)
T KOG0495|consen  810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGT  866 (913)
T ss_pred             HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCC
Confidence                  344577789999999999999999999999999999999888888888884

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.87  E-value=2.2e-18  Score=185.14  Aligned_cols=226  Identities=12%  Similarity=-0.007  Sum_probs=170.2

Q ss_pred             hHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Q 006562          397 YASAISIFDQILKEDPMYP-------EALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEA  468 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A  468 (640)
                      .+.|+..++..+...+..|       .+..-.-.++...|++.+++..|+.+.... |-...+....|..|...+++++|
T Consensus       267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA  346 (822)
T PRK14574        267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA  346 (822)
T ss_pred             HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence            3556666677666333222       233444556667788888888888876544 22445677788888888888888


Q ss_pred             HHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---------------CcHHHHHHHHHHH
Q 006562          469 IQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK---------------ENKSAYTYLGLAL  527 (640)
Q Consensus       469 ~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---------------~~~~~~~~la~~~  527 (640)
                      +.+|..++.-.|      ........+...+...+++++|..++++.....|               +-......++.++
T Consensus       347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~  426 (822)
T PRK14574        347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL  426 (822)
T ss_pred             HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence            888888877552      1233345677778888888888888888877444               2245666778888


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD  607 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  607 (640)
                      ...|++.+|.+.+++.+...|.++..+..+|.++...|.+..|...++.+..++|++..+...+|.++..+|++.+|...
T Consensus       427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~  506 (822)
T PRK14574        427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELL  506 (822)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhhccCCCCHHHH
Q 006562          608 LSSGLGIDPSNIECL  622 (640)
Q Consensus       608 ~~~al~~~p~~~~~~  622 (640)
                      ...+++..|+++...
T Consensus       507 ~~~l~~~~Pe~~~~~  521 (822)
T PRK14574        507 TDDVISRSPEDIPSQ  521 (822)
T ss_pred             HHHHHhhCCCchhHH
Confidence            888888888877443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4.5e-20  Score=171.48  Aligned_cols=288  Identities=22%  Similarity=0.251  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 006562           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFS  114 (640)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~  114 (640)
                      +.+.......++++.+|..|+..|+.||...|+ ...|.+||.++..+|+|+.|..++++.+.++|.+.+++.+.|+++.
T Consensus        49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~  128 (486)
T KOG0550|consen   49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL  128 (486)
T ss_pred             HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence            344556666889999999999999999999954 4558899999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCC
Q 006562          115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNK  194 (640)
Q Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (640)
                      .++...+|...|+..      +         ..    ...+.+     ..                              
T Consensus       129 a~~~~i~A~~~~~~~------~---------~~----~~anal-----~~------------------------------  154 (486)
T KOG0550|consen  129 ALSDLIEAEEKLKSK------Q---------AY----KAANAL-----PT------------------------------  154 (486)
T ss_pred             hhHHHHHHHHHhhhh------h---------hh----HHhhhh-----hh------------------------------
Confidence            999999999777633      0         00    000000     00                              


Q ss_pred             CCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhc
Q 006562          195 SDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEIN  274 (640)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (640)
                                                                +.. +                                 
T Consensus       155 ------------------------------------------~~~-~---------------------------------  158 (486)
T KOG0550|consen  155 ------------------------------------------LEK-L---------------------------------  158 (486)
T ss_pred             ------------------------------------------hhc-c---------------------------------
Confidence                                                      000 0                                 


Q ss_pred             cccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhh
Q 006562          275 RQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDM  354 (640)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  354 (640)
                                                                                +. ..+                
T Consensus       159 ----------------------------------------------------------~~-s~s----------------  163 (486)
T KOG0550|consen  159 ----------------------------------------------------------AP-SHS----------------  163 (486)
T ss_pred             ----------------------------------------------------------cc-ccc----------------
Confidence                                                                      00 000                


Q ss_pred             hHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 006562          355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA  434 (640)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A  434 (640)
                                           ..|.-..+.+..+.++...|++++|...--.++++++.+.++++..|.+++..++.+.|
T Consensus       164 ---------------------~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka  222 (486)
T KOG0550|consen  164 ---------------------REPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKA  222 (486)
T ss_pred             ---------------------CCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHH
Confidence                                 00111334456788888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCC
Q 006562          435 ISDFTEAIQSNPSAG------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKD  498 (640)
Q Consensus       435 ~~~~~~al~~~p~~~------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~  498 (640)
                      +..|++++.++|++.            ..+...|.-.++.|++..|.+.|..++.++|++    ...|.+++.+..++|+
T Consensus       223 ~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr  302 (486)
T KOG0550|consen  223 INHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR  302 (486)
T ss_pred             HHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC
Confidence            999999999998764            356667888888899999999999999999876    3467888888889999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      ..+|+...+.++.++|....++...|.++..+++|++|++.|+++++...+
T Consensus       303 l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  303 LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999988899999999999999999999999999887654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=3.5e-18  Score=164.82  Aligned_cols=233  Identities=21%  Similarity=0.285  Sum_probs=199.0

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHH
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------PEALIGRGTARAFQRELEAAISDFTEA  441 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (640)
                      ........+ .+...+...+-.++..|.+.+++..+..+++.....       ..+...+|..|...++++.|+.+|.++
T Consensus       246 ~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  246 HYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             HHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence            455556666 778888999999999999999999999888765432       233445677888889999999999998


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (640)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (640)
                      +.....        ..+.......++++.......-.+|.-...-...|..++..|+|..|+..|.+++..+|+++..|.
T Consensus       325 Lte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYs  396 (539)
T KOG0548|consen  325 LTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYS  396 (539)
T ss_pred             hhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHH
Confidence            876543        556667778888888888888888888877888899999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH  601 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  601 (640)
                      ++|.+|..+|.+..|+...+.+++++|+...+|..-|.++..+.+|++|.+.|+++++.+|++.++.-.+..+...+...
T Consensus       397 NRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~  476 (539)
T KOG0548|consen  397 NRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGD  476 (539)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999888888888765444


Q ss_pred             HHHHHHHHH
Q 006562          602 KKAIKDLSS  610 (640)
Q Consensus       602 ~~A~~~~~~  610 (640)
                      ....+..++
T Consensus       477 ~~~ee~~~r  485 (539)
T KOG0548|consen  477 ETPEETKRR  485 (539)
T ss_pred             CCHHHHHHh
Confidence            444445554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.86  E-value=2.2e-19  Score=173.82  Aligned_cols=236  Identities=17%  Similarity=0.151  Sum_probs=180.4

Q ss_pred             cCChHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          394 EGKYASAISIFDQILKEDP---M-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI  469 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~---~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  469 (640)
                      .+..+.++..+.+++...|   . .+..++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566788888888886433   2 36778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      ..|+++++++|++..++..+|.++...|++++|+..++++++.+|+++..... ..+....+++++|+..+.++....+.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~~~~A~~~l~~~~~~~~~  197 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLDPKQAKENLKQRYEKLDK  197 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCCHHHHHHHHHHHHhhCCc
Confidence            99999999999999999999999999999999999999999999988742222 22344567899999999776654332


Q ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHH-------HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC-CCHHH
Q 006562          550 FLEAWGHLTQFYQDLANSEKALECLQQV-------LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP-SNIEC  621 (640)
Q Consensus       550 ~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~  621 (640)
                      .  .|. .+.++...|+...+ ..++.+       .+..|..+.+|+.+|.++...|++++|+.+|+++++.+| +..+.
T Consensus       198 ~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~  273 (296)
T PRK11189        198 E--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH  273 (296)
T ss_pred             c--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence            2  222 34555556665443 233333       345566778899999999999999999999999999986 66666


Q ss_pred             HHHHHHHHHHcCC
Q 006562          622 LYLRASCYHAIGE  634 (640)
Q Consensus       622 ~~~la~~~~~~g~  634 (640)
                      .+.+..+....++
T Consensus       274 ~~~~~e~~~~~~~  286 (296)
T PRK11189        274 RYALLELALLGQD  286 (296)
T ss_pred             HHHHHHHHHHHhh
Confidence            6666665554443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=180.00  Aligned_cols=252  Identities=18%  Similarity=0.220  Sum_probs=220.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  464 (640)
                      +..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHH
Q 006562          465 SVEAIQDLSKALEFEPNSADILHE-------RGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKK  535 (640)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~-------la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~  535 (640)
                      -.+|+.++.+-+...|........       ...-......+..-.+.|-.+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887754321110       00011112234455667777777777  789999999999999999999


Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      |+.+|+.|+...|++...|..||-.+....+.++|+..|++|+++.|....+++++|..++.+|.|++|.++|-.++.+.
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875


Q ss_pred             CC----------CHHHHHHHHHHHHHcCCcc
Q 006562          616 PS----------NIECLYLRASCYHAIGEYR  636 (640)
Q Consensus       616 p~----------~~~~~~~la~~~~~~g~~~  636 (640)
                      +.          +..+|-.|-.++..+++.+
T Consensus       529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  529 RKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             hcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            44          1257777777777777766

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.8e-18  Score=160.60  Aligned_cols=264  Identities=18%  Similarity=0.156  Sum_probs=215.6

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH---------------------------
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR---------------------------  421 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l---------------------------  421 (640)
                      +.-.....-|.++..+..+|.+++..|++.+|+..|+++.-.+|......-..                           
T Consensus       220 l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t  299 (564)
T KOG1174|consen  220 LMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT  299 (564)
T ss_pred             HHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence            33444556788899999999999999999999999999998888764433333                           


Q ss_pred             -------HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562          422 -------GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (640)
Q Consensus       422 -------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (640)
                             +...+..+++..|+.+.+++++.+|.+..++...|.++...++.++|+-.|+.+..+.|...+.|..+..+|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL  379 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL  379 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence                   3344455667778888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLG-LALSS-IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la-~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (640)
                      ..|.+.+|.-..+.+++..|.+...+..+| .+++. -.--++|.+.+++++.+.|....+...++.++...|.+.+++.
T Consensus       380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence            888888888888888888888887777775 44443 2335678899999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      .+++.+...|+ ...+..+|.++...+.+++|..+|..++.++|++..++..+-.+-....
T Consensus       460 LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  460 LLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            99999988876 5678899999999999999999999999999999988888766655444

>PRK12370 invasion protein regulator; Provisional

Probab=99.85  E-value=8.8e-19  Score=185.10  Aligned_cols=249  Identities=16%  Similarity=0.064  Sum_probs=218.2

Q ss_pred             hhHHHHHhhhhccCcccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH
Q 006562          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNE---------GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA  434 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---------g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A  434 (640)
                      ......+.++...+|.++..+..+|.++...         +++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus       278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A  357 (553)
T PRK12370        278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG  357 (553)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence            3444567788899999999999999877643         3489999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Q 006562          435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-  513 (640)
Q Consensus       435 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  513 (640)
                      +..|+++++.+|+++.+++.+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... 
T Consensus       358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~  437 (553)
T PRK12370        358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL  437 (553)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999998877777778888999999999999999875 


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (640)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (640)
                      |+++..+..+|.++...|++++|...+.+.....|....++..++..|...|  +.|...+++.++.....+......+.
T Consensus       438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~  515 (553)
T PRK12370        438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL  515 (553)
T ss_pred             ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH
Confidence            7889999999999999999999999999999889998889999999998888  47888787776654433333344788


Q ss_pred             HHHhcCCHHHHHHHHHHhhccC
Q 006562          594 LLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      ++.-.|+.+.+..+ +++.+..
T Consensus       516 ~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        516 VLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHhhhHHHHHH-HHhhccc
Confidence            88889999888888 7766554

>TIGR00540 hemY_coli hemY protein

Probab=99.85  E-value=8.7e-18  Score=171.11  Aligned_cols=228  Identities=13%  Similarity=0.030  Sum_probs=190.5

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK----RRGQARAA  461 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~  461 (640)
                      ..+..++..|+++.|...++.+.+..|+++.++..++.++...|++++|...+.+..+....++..+.    ....-...
T Consensus       158 ~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~  237 (409)
T TIGR00540       158 ARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD  237 (409)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34788899999999999999999999999999999999999999999999999999987554443321    22222234


Q ss_pred             cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH--HHHHHHHHHcCCHHH
Q 006562          462 LGESVEAIQDLSKALEFEP----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY--TYLGLALSSIGEYKK  535 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~la~~~~~~g~~~~  535 (640)
                      .+..+++...+..+....|    +++..+..++..+...|++++|...++++++..|++....  ..........++.+.
T Consensus       238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~  317 (409)
T TIGR00540       238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK  317 (409)
T ss_pred             HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence            4455556678888888777    5889999999999999999999999999999999887532  333344444688899


Q ss_pred             HHHHHHHHHccCcccH--HHHHHHHHHHHHhcCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          536 AEEAHLKAIQLDRNFL--EAWGHLTQFYQDLANSEKALECLQ--QVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      +++.++++++..|+++  .....+|.++.+.|++++|.++|+  .+++..|+... +..+|.++.+.|+.++|.++++++
T Consensus       318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999999999  888899999999999999999999  57778887555 669999999999999999999998


Q ss_pred             hcc
Q 006562          612 LGI  614 (640)
Q Consensus       612 l~~  614 (640)
                      +..
T Consensus       397 l~~  399 (409)
T TIGR00540       397 LGL  399 (409)
T ss_pred             HHH
Confidence            653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.84  E-value=1.8e-18  Score=149.11  Aligned_cols=207  Identities=22%  Similarity=0.213  Sum_probs=159.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ....+.+|..|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.++|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45667777888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      ..|++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|+++++.+|+.+.....++..++..|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            888888888888887764  344566777788888888888888888888888888887777778888888888888877


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (640)
                      ++++.....+-....+....++-...|+-+.+-.+=.+.....|...+.
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~  243 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY  243 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence            7777777666666777667777777777777777777776777765543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.84  E-value=1.4e-20  Score=182.36  Aligned_cols=236  Identities=20%  Similarity=0.213  Sum_probs=124.9

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .|.++.+|..+|......++++.|+..|++++..++.++..+..++.+ ...+++++|+.++.++.+..+ ++..+....
T Consensus        40 ~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l  117 (280)
T PF13429_consen   40 PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSAL  117 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHH
Confidence            467789999999999999999999999999999999989888888888 799999999999999988764 566777788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          457 QARAALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (640)
                      .++...++++++...+.++....  +.++..+..+|.++...|++++|+..++++++.+|+++.+...++.++...|+++
T Consensus       118 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~  197 (280)
T PF13429_consen  118 QLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYD  197 (280)
T ss_dssp             H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChH
Confidence            88999999999999999987655  6778899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      ++...+.......|.++..+..+|.++...|++++|+.+|++++...|+++.++..+|.++...|+.++|..++.+++..
T Consensus       198 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~  277 (280)
T PF13429_consen  198 EAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL  277 (280)
T ss_dssp             HHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999998888888899999999999999999999999999999999999999999999999999999999999988753

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.84  E-value=1.4e-18  Score=149.81  Aligned_cols=209  Identities=21%  Similarity=0.181  Sum_probs=196.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (640)
                      ..+...+|.-|+..|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.+.|++.+++.+.|..++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562          495 KFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       495 ~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (640)
                      .+|++++|...|++++..  .+..+..+.++|.|..+.|+++.|..+|++++..+|+.+.....++..++..|++..|..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence            999999999999999975  355678999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      ++++.....+-....+.....+-...|+-+.|-.+=.+.....|...+.-.
T Consensus       195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~  245 (250)
T COG3063         195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT  245 (250)
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence            999998888888888888889999999999999999998899998776543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.84  E-value=2.1e-18  Score=167.03  Aligned_cols=219  Identities=18%  Similarity=0.115  Sum_probs=177.9

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .+..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|
T Consensus        60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg  139 (296)
T PRK11189         60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRG  139 (296)
T ss_pred             cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            33457889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (640)
                      .++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.+...+..  .|. .+.++...|+...+
T Consensus       140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~  215 (296)
T PRK11189        140 IALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE  215 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH
Confidence            9999999999999999999999999874222 2234456789999999998877554322  222 35556666766443


Q ss_pred             --HHHHHHH----HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcC
Q 006562          537 --EEAHLKA----IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       537 --~~~~~~a----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g  599 (640)
                        ...+.+.    .+..|....+|+++|.++...|++++|+.+|++++..+| +..+..+.+..+....+
T Consensus       216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~  285 (296)
T PRK11189        216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ  285 (296)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence              3223322    244566788999999999999999999999999999997 66666665555554433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.84  E-value=3.6e-18  Score=161.59  Aligned_cols=199  Identities=22%  Similarity=0.237  Sum_probs=131.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..++.+|..++..|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            55666777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      ..|++++|+..+++++...  +.....+..+|.++...|++++|...+.+++..+|+++..+..+|.++...|++++|..
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  190 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA  190 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777776542  23344555566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (640)
                      .+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       191 YLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            66666655555555555556666666666666555554443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.8e-17  Score=151.88  Aligned_cols=218  Identities=18%  Similarity=0.125  Sum_probs=199.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ..-|+--+...+...++..|+.+-+++++.+|.+..++...|.++...|+.++|+-.|+.+..+.|..-+.|..+-.+|.
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL  379 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL  379 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            45577778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERG-IVNFK-FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      ..|.+.+|.-....++...|.+..++..+| .+++. -.--++|.+++++++.+.|....+...++..+...|.+..++.
T Consensus       380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~  459 (564)
T KOG1174|consen  380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK  459 (564)
T ss_pred             hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence            999999999999999999999999999886 44443 3456899999999999999999999999999999999999999


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (640)
                      .+++.+...|+ ...+..+|.++...+.+.+|..+|..++.++|.+..+...+-.+-....
T Consensus       460 LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  460 LLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             HHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            99999998886 5788999999999999999999999999999998887776655544433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.83  E-value=3e-18  Score=162.07  Aligned_cols=203  Identities=19%  Similarity=0.218  Sum_probs=189.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      .+..+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHH
Q 006562          494 FKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  571 (640)
                      ...|++++|+..+.+++...  +.....+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|++++|.
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999854  4567788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          572 ECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       572 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      .++++++...|..+..+..++.++...|+.++|..+.+.+....|
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            999999999888889999999999999999999999887766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.83  E-value=1.1e-16  Score=160.64  Aligned_cols=242  Identities=21%  Similarity=0.230  Sum_probs=201.3

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKA  475 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a  475 (640)
                      ..++++.++++++.+|+|+.+.+.++.-|...++.+.|..+.+++++.++ +++.+|..++.++...+++.+|+...+.+
T Consensus       460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a  539 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA  539 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999954 57899999999999999999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH---------HHHHHHcCCHHHHHHHHHHHHcc
Q 006562          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL---------GLALSSIGEYKKAEEAHLKAIQL  546 (640)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---------a~~~~~~g~~~~A~~~~~~a~~~  546 (640)
                      +...|++-........+-...++.++|+..+...+.+....+.+-..+         +......++..+|+....++...
T Consensus       540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l  619 (799)
T KOG4162|consen  540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL  619 (799)
T ss_pred             HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence            999999877777777777789999999999888877654333222222         22222233444444444443321


Q ss_pred             ---------------------Cccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q 006562          547 ---------------------DRNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (640)
Q Consensus       547 ---------------------~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (640)
                                           .|..     ...|...+..+...++.++|..++.++-..+|-.+..|+..|.++...|+
T Consensus       620 ~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~  699 (799)
T KOG4162|consen  620 VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ  699 (799)
T ss_pred             HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh
Confidence                                 1111     35677889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       601 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      +.+|.+.|..++.++|+++.....+|.++.+.|+..-|
T Consensus       700 ~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la  737 (799)
T KOG4162|consen  700 LEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLA  737 (799)
T ss_pred             hHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchH
Confidence            99999999999999999999999999999999976544

>TIGR00540 hemY_coli hemY protein

Probab=99.83  E-value=1.1e-17  Score=170.41  Aligned_cols=269  Identities=14%  Similarity=0.027  Sum_probs=218.0

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      +.+..+..|.....++..|.++...|+++.|..++.++.+..|++. .+....+.++...|+++.|...+++.++..|++
T Consensus       107 l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~  186 (409)
T TIGR00540       107 IAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH  186 (409)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            4445556666677778888889999999999999999988888874 466667888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHhCC----CcHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH----ERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAY  520 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~  520 (640)
                      +.++..++.++...|++++|...+.+..+....++....    ....-+...+..+++...+.++....|    +++..+
T Consensus       187 ~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~  266 (409)
T TIGR00540       187 KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK  266 (409)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence            999999999999999999999999988877554433221    222222344455556667777777777    588999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHH
Q 006562          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--GHLTQFYQDLANSEKALECLQQVLYIDKRFS--KAYHLRGLLLH  596 (640)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~  596 (640)
                      ..++..+...|++++|...++++++..|++....  ..........++.+.++..++++++..|+++  .....+|+++.
T Consensus       267 ~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~  346 (409)
T TIGR00540       267 IALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLM  346 (409)
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            9999999999999999999999999999886532  2333334446888999999999999999999  88999999999


Q ss_pred             hcCCHHHHHHHHH--HhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          597 GLGQHKKAIKDLS--SGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       597 ~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +.|++++|.++|+  .+++..|+... +..+|.++.++|+.++|.
T Consensus       347 ~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~  390 (409)
T TIGR00540       347 KHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA  390 (409)
T ss_pred             HcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH
Confidence            9999999999999  57888898655 559999999999988874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.83  E-value=1.8e-16  Score=155.61  Aligned_cols=257  Identities=14%  Similarity=0.081  Sum_probs=177.1

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      +..++.-.|..-..|+..+..--..|..++-..++++++...|.....|+..+..++..|+...|...+..+++.+|++.
T Consensus       539 ya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse  618 (913)
T KOG0495|consen  539 YAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE  618 (913)
T ss_pred             HHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH
Confidence            44445566666666666666666666666666777777777776666666667777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (640)
                      ++|+..-.+.....+++.|...|.++....| ...+|+-.+.+...+++.++|+.+++++++..|.....|..+|.++..
T Consensus       619 eiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~  697 (913)
T KOG0495|consen  619 EIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ  697 (913)
T ss_pred             HHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence            7776666666666777777777777666555 335666666666667777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (640)
                      +++.+.|...|...++..|..+..|..++.+-...|..-.|..+++++.-.+|.+...|.....+-.+.|+.+.|...+.
T Consensus       698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhhccCCCCHHHHHHHHH
Q 006562          610 SGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       610 ~al~~~p~~~~~~~~la~  627 (640)
                      +|++-.|++...|..-..
T Consensus       778 kALQecp~sg~LWaEaI~  795 (913)
T KOG0495|consen  778 KALQECPSSGLLWAEAIW  795 (913)
T ss_pred             HHHHhCCccchhHHHHHH
Confidence            777777776655544333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.82  E-value=1.1e-18  Score=157.21  Aligned_cols=248  Identities=13%  Similarity=0.069  Sum_probs=224.8

Q ss_pred             HHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          390 AQVNEGKYASAISIFDQILKED---PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~---~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      +++..+|...|-......++.+   |.       +.+--..+|.||+..|.+.+|...++.+++..| .++.+..++.+|
T Consensus       188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY  266 (478)
T KOG1129|consen  188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY  266 (478)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence            4555667777776666655432   11       234446799999999999999999999999876 678888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (640)
                      ....++..|+..+...++..|.+...+..+++++..++++++|.++|+.+++.+|.+.++.-.+|..|+..++.+-|+.+
T Consensus       267 ~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry  346 (478)
T KOG1129|consen  267 QRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY  346 (478)
T ss_pred             HHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       540 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      |++.++..-.+++.+.++|.+.+..++++-++..|++++....   .-.++|+++|.+....|++.-|...|+-++..+|
T Consensus       347 YRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~  426 (478)
T KOG1129|consen  347 YRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA  426 (478)
T ss_pred             HHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc
Confidence            9999999999999999999999999999999999999998654   3467999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCcccc
Q 006562          617 SNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       617 ~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ++.+++.+||.+-.+.|+.++|
T Consensus       427 ~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  427 QHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             chHHHHHhHHHHHhhcCchHHH
Confidence            9999999999999999998876

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.82  E-value=3.7e-17  Score=178.96  Aligned_cols=257  Identities=10%  Similarity=-0.038  Sum_probs=220.9

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRR  455 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  455 (640)
                      +.+...|..+...|...|++++|+.+|++..+.. .-+...+..+...+...|++++|...+..+++.. +.+..++..+
T Consensus       287 ~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L  366 (697)
T PLN03081        287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL  366 (697)
T ss_pred             CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence            3467788889999999999999999999987643 2246788899999999999999999999999876 5567788899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~  534 (640)
                      ...|.+.|++++|...|++..+   .+...|..+...|.+.|+.++|++.|++..... .-+...+..+...+...|..+
T Consensus       367 i~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~  443 (697)
T PLN03081        367 VDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSE  443 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHH
Confidence            9999999999999999998754   356789999999999999999999999988753 224667788888999999999


Q ss_pred             HHHHHHHHHHccCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          535 KAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       535 ~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      +|..+|+.+.+..+  .+...|..+...+.+.|++++|.+.+++.- .. .+...|..+...+...|+++.|...+++.+
T Consensus       444 ~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        444 QGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             HHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            99999999876432  235678889999999999999999987652 23 346679999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          613 GIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++.|++...+..++.+|...|++++|.
T Consensus       522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        522 GMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             CCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            999999999999999999999999885

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.2e-16  Score=145.69  Aligned_cols=252  Identities=15%  Similarity=0.105  Sum_probs=148.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-  462 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-  462 (640)
                      .+.+|.+.+..-.|++|++.|.+++..+|+....-..+|.||+++.-|+-+.+.+.-.+...|+.+-+....+...++. 
T Consensus       154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~  233 (557)
T KOG3785|consen  154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI  233 (557)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence            3455666666677888888888888877777777777888888888888888888888888888777766666555443 


Q ss_pred             -CCHHHH----------------HHHHH----------HHHHhCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562          463 -GESVEA----------------IQDLS----------KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVK  511 (640)
Q Consensus       463 -~~~~~A----------------~~~~~----------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (640)
                       |+..++                ...++          -+++.-|.    -|++..++...|.++++..+|....+   .
T Consensus       234 ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---d  310 (557)
T KOG3785|consen  234 NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---D  310 (557)
T ss_pred             ccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---h
Confidence             221111                11110          11122221    24567777777888888888777655   3


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH---HccC------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKA---IQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (640)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (640)
                      ++|..|.-+...|.+....|+--...+.+.-+   +++-      -+.......++.+++...++++.+.++...-....
T Consensus       311 l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~  390 (557)
T KOG3785|consen  311 LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT  390 (557)
T ss_pred             cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56777777777777777766543333332222   1111      11122334455555555566666666665555555


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHHcCCcccc
Q 006562          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ++....+++|+++...|++.+|.+.|-+.-... .+.......+|.||...|.++-|
T Consensus       391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA  447 (557)
T KOG3785|consen  391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA  447 (557)
T ss_pred             CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence            555666666666666666666666665543333 22233444566666666655443

>PLN02789 farnesyltranstransferase

Probab=99.81  E-value=3.9e-17  Score=157.21  Aligned_cols=237  Identities=16%  Similarity=0.133  Sum_probs=210.6

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH--
Q 006562          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES--  465 (640)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~--  465 (640)
                      .++...+.+++|+..+.++++.+|.+..+|..++.++...| ++++++..++++++.+|++..+|...+.++...|+.  
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhh
Confidence            34666789999999999999999999999999999999998 689999999999999999999999999999988874  


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCH----HHHHH
Q 006562          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEY----KKAEE  538 (640)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~----~~A~~  538 (640)
                      ++++.++.++++.+|++..+|..++.++...|++++++.++.++++.+|.+..+|..++.+....   |.+    ++++.
T Consensus       125 ~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        125 NKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999998776   333    57888


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC---------------
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---------------  599 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---------------  599 (640)
                      +..+++..+|++..+|..++.++..    .++..+|+..+.+++...|.++.++..++.+|....               
T Consensus       205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~  284 (320)
T PLN02789        205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE  284 (320)
T ss_pred             HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence            8899999999999999999999987    456678999999999999999999999999998632               


Q ss_pred             ---CHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562          600 ---QHKKAIKDLSSGLGIDPSNIECLYLR  625 (640)
Q Consensus       600 ---~~~~A~~~~~~al~~~p~~~~~~~~l  625 (640)
                         ..++|...+...-+.+|-....|...
T Consensus       285 ~~~~~~~a~~~~~~l~~~d~ir~~yw~~~  313 (320)
T PLN02789        285 ELSDSTLAQAVCSELEVADPMRRNYWAWR  313 (320)
T ss_pred             ccccHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence               34678888888767777666655543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.81  E-value=4e-16  Score=158.01  Aligned_cols=226  Identities=13%  Similarity=0.035  Sum_probs=184.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH--------HHHH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK--------RRGQ  457 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~--------~la~  457 (640)
                      ..+..+...|+++.|+..++++.+.+|+++.++..++.+|...|++++|+..+.+..+..+.++....        .+..
T Consensus       158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            34778889999999999999999999999999999999999999999999999999887766543222        2122


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      ......+.+.....++......|+++.+...++..+...|+.++|...++++++. |.++......+.+  ..++.++++
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al  314 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLE  314 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHH
Confidence            2222333444555555555556778999999999999999999999999999995 4455554444444  448999999


Q ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      ..+++.++..|+++..+..+|.++...|++++|..+|+++++..|+. ..+..++.++.++|+.++|..+|++++.+.
T Consensus       315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999885 446689999999999999999999998754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.80  E-value=1.8e-16  Score=160.54  Aligned_cols=253  Identities=13%  Similarity=0.030  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (640)
                      .++..+......|+++.|..++.++.+.+|++..+. ...+.++...|+++.|...++++.+..|+++.++..++.+|..
T Consensus       120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~  199 (398)
T PRK10747        120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR  199 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            344446666888999999999999988888875333 3458888889999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          462 LGESVEAIQDLSKALEFEPNSADILH--------ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~--------~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (640)
                      .|+|++|+..+.+..+..+.++....        .+........+.+...+.++..-...|+++.+...++..+...|+.
T Consensus       200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~  279 (398)
T PRK10747        200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDH  279 (398)
T ss_pred             HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCH
Confidence            99999999888888877665443222        1111122233344444555554455677899999999999999999


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      ++|...+++++.. +.++......+.+  ..++.++++..+++.++..|+++..+..+|.++...|++++|..+|+++++
T Consensus       280 ~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~  356 (398)
T PRK10747        280 DTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK  356 (398)
T ss_pred             HHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            9999999999995 4456555555544  449999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          614 IDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ..|++. .+..++.++.++|+.++|.
T Consensus       357 ~~P~~~-~~~~La~~~~~~g~~~~A~  381 (398)
T PRK10747        357 QRPDAY-DYAWLADALDRLHKPEEAA  381 (398)
T ss_pred             cCCCHH-HHHHHHHHHHHcCCHHHHH
Confidence            999854 4668999999999998874

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.79  E-value=1.9e-14  Score=159.43  Aligned_cols=233  Identities=16%  Similarity=0.037  Sum_probs=159.2

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWK  453 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  453 (640)
                      .+...+..+...+.+.|++++|.++|.++...    .|+ ...+..+...|.+.|++++|.+.|+++.+.+ +.+...|.
T Consensus       540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn  618 (1060)
T PLN03218        540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT  618 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence            34556666677777777777777777777652    333 5566667777777777777777777777665 34556677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Q 006562          454 RRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSI  530 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~  530 (640)
                      .+...|.+.|++++|+..|.++...  .| +...+..+...+.+.|++++|.+.+..+.+.. +.+...+..+...|.+.
T Consensus       619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~  697 (1060)
T PLN03218        619 IAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA  697 (1060)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            7777777777777777777777665  33 34566777777777777777777777777654 33556777777777777


Q ss_pred             CCHHHHHHHHHHHHcc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHH
Q 006562          531 GEYKKAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKD  607 (640)
Q Consensus       531 g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~  607 (640)
                      |++++|...|+++...  .| +...|..+...|.+.|++++|+++|++..... ..+...|..+...+.+.|++++|...
T Consensus       698 G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l  776 (1060)
T PLN03218        698 KNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL  776 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            7777777777776543  33 35667777777777777777777777765432 22345566666777777777777777


Q ss_pred             HHHhhcc
Q 006562          608 LSSGLGI  614 (640)
Q Consensus       608 ~~~al~~  614 (640)
                      +..+.+.
T Consensus       777 ~~~M~k~  783 (1060)
T PLN03218        777 LSQAKED  783 (1060)
T ss_pred             HHHHHHc
Confidence            7777653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.78  E-value=2.7e-16  Score=142.00  Aligned_cols=231  Identities=19%  Similarity=0.201  Sum_probs=139.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARA  460 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~  460 (640)
                      ..|..++-..+.++|++.|-.+++.+|...++.+.+|..+...|..+.|+..-+..+.. |+.     ..+...+|.-|+
T Consensus        40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym  118 (389)
T COG2956          40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYM  118 (389)
T ss_pred             HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHH
Confidence            34555555666666666666666666666666666666666666666666665554432 332     234555666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KSAYTYLGLALSSIGEYKK  535 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~la~~~~~~g~~~~  535 (640)
                      ..|-++.|...|........--..+...+..+|....+|++|+...++..++.+..     ...+..++..+....+.+.
T Consensus       119 ~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~  198 (389)
T COG2956         119 AAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR  198 (389)
T ss_pred             HhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence            66666666666666555444444556666666666666666666666666655543     2344455555555666666


Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      |...+.++++.+|....+-..+|.++...|+|+.|++.++.+++.+|+. +.+...+..+|.++|+.++.+.++.++.+.
T Consensus       199 A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         199 ARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            6666666666666666666666666666666666666666666666654 345556666666666666666666666655


Q ss_pred             CCC
Q 006562          615 DPS  617 (640)
Q Consensus       615 ~p~  617 (640)
                      .++
T Consensus       279 ~~g  281 (389)
T COG2956         279 NTG  281 (389)
T ss_pred             cCC
Confidence            554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=3.2e-18  Score=166.43  Aligned_cols=221  Identities=19%  Similarity=0.249  Sum_probs=195.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 006562          419 IGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (640)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (640)
                      +..|..+++.|+..+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.
T Consensus       289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHccCc--ccHHHHHHHHHHHHHhcCHHH
Q 006562          499 FNAAVEDLSACVKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEK  569 (640)
Q Consensus       499 ~~~A~~~~~~al~~~~~~~~~~~~-------la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~  569 (640)
                      -.+|+.++.+-+...|........       ...-......+..-.+.|-.+....|  .++++...||.+|...|+|++
T Consensus       369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999999999887653211110       00000111123345567777777777  689999999999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |+.+|+.++...|.+...|..||-.+..-.+.++|+..|.+|+++.|+...++++||.+++.+|.|++|+
T Consensus       449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.78  E-value=1.6e-18  Score=156.07  Aligned_cols=104  Identities=30%  Similarity=0.434  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 006562           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (640)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~  112 (640)
                      .-+.+-+-++.+++..++|++|+..|++||+++ .|+..|+|||.+|.++|+|+.|+.+|+.||.+||++.++|.++|.+
T Consensus        79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A  158 (304)
T KOG0553|consen   79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLA  158 (304)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            344555678889999999999999999999999 7778899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCCh
Q 006562          113 FSALGRKEEALSVWEKGYEHALHQS  137 (640)
Q Consensus       113 y~~~g~~~~A~~~~~~al~~~~~~~  137 (640)
                      |+.+|++++|+..|++||+++|+..
T Consensus       159 ~~~~gk~~~A~~aykKaLeldP~Ne  183 (304)
T KOG0553|consen  159 YLALGKYEEAIEAYKKALELDPDNE  183 (304)
T ss_pred             HHccCcHHHHHHHHHhhhccCCCcH
Confidence            9999999999999999988888775

>PLN03077 Protein ECB2; Provisional

Probab=99.78  E-value=1.3e-15  Score=171.00  Aligned_cols=253  Identities=13%  Similarity=0.000  Sum_probs=205.7

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQA  458 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~  458 (640)
                      +...|..+...+...|++.+|+.+|++.....+.+...+..+-..+...|+.+.+.+.+..+++... .+...+..+-..
T Consensus       454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~  533 (857)
T PLN03077        454 DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL  533 (857)
T ss_pred             CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence            4456666777778888888888888888765444566666677777788888888888887776542 234455667789


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--KENKSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A  536 (640)
                      |.+.|+.++|...|+..    +.+...|..+...|...|+.++|+..|++..+..  |+ ...+..+-..+...|.+++|
T Consensus       534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQG  608 (857)
T ss_pred             HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHH
Confidence            99999999999999886    5577899999999999999999999999988753  44 44566666788999999999


Q ss_pred             HHHHHHHHccCc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          537 EEAHLKAIQLDR--NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       537 ~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      ..+|+.+....+  .+...|..+..++.+.|++++|.+.+++. ...|+ +.+|..+-..+...|+.+.+....++++++
T Consensus       609 ~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l  686 (857)
T PLN03077        609 LEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFEL  686 (857)
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence            999999884322  23578899999999999999999999886 24444 677888877888899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCccccc
Q 006562          615 DPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       615 ~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      .|++...+..++.+|...|++++|.
T Consensus       687 ~p~~~~~y~ll~n~ya~~g~~~~a~  711 (857)
T PLN03077        687 DPNSVGYYILLCNLYADAGKWDEVA  711 (857)
T ss_pred             CCCCcchHHHHHHHHHHCCChHHHH
Confidence            9999999999999999999999874

>PLN03218 maturation of RBCL 1; Provisional

Probab=99.78  E-value=2.9e-14  Score=157.91  Aligned_cols=246  Identities=14%  Similarity=-0.016  Sum_probs=195.8

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRG  456 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la  456 (640)
                      +...+..+...|.+.|++++|.++|+.+.+.+ +.+...|..+...|.+.|++++|+..|.+..+.  .| +...|..+.
T Consensus       578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI  656 (1060)
T PLN03218        578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALV  656 (1060)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Confidence            45677778888999999999999999999876 456789999999999999999999999999876  34 466888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHH
Q 006562          457 QARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~  534 (640)
                      ..+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|...|++..... ..+...|..+...|.+.|+++
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e  736 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP  736 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999864 3467789999999999999999999999987642 235678999999999999999


Q ss_pred             HHHHHHHHHHcc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          535 KAEEAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       535 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      +|.+.|+++...  .| +...|..+...+.+.|++++|..++..+++... .+...+..+-.++.  +++++|....+..
T Consensus       737 eAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v  813 (1060)
T PLN03218        737 KALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPV  813 (1060)
T ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhh
Confidence            999999998754  34 466777778899999999999999999987543 22334443332222  4677787777766


Q ss_pred             hccCCCC---HHHHHHHHHHH
Q 006562          612 LGIDPSN---IECLYLRASCY  629 (640)
Q Consensus       612 l~~~p~~---~~~~~~la~~~  629 (640)
                      +..++.+   ...|...|..+
T Consensus       814 ~~f~~g~~~~~n~w~~~Al~l  834 (1060)
T PLN03218        814 VSFDSGRPQIENKWTSWALMV  834 (1060)
T ss_pred             hhhhccccccccchHHHHHHH
Confidence            6555433   23455555443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.78  E-value=5.9e-17  Score=166.00  Aligned_cols=248  Identities=14%  Similarity=0.077  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH--------------------HHHHHHHHHH-----HHccCHHHHHHHH
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP--------------------EALIGRGTAR-----AFQRELEAAISDF  438 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------~~~~~la~~~-----~~~g~~~~A~~~~  438 (640)
                      .+.+|.+......|.+|...+.......-+++                    ...+..+..+     ..+.+...|+..|
T Consensus       402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~al  481 (1238)
T KOG1127|consen  402 QRAKGLAPIEANVYTDAAITLDLVSSLSFNDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHAL  481 (1238)
T ss_pred             hhhcchhHHHHhhchHHHHHHHHHHHhhcCchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            56667777778888888888877766542211                    1111111111     1234578899999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--
Q 006562          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--  516 (640)
Q Consensus       439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--  516 (640)
                      -++++++|..+.++..+|.+|....+...|..+|+++.++++.+..+....+..|....+++.|....-.+-+..|..  
T Consensus       482 i~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~  561 (1238)
T KOG1127|consen  482 IRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFAC  561 (1238)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999876666666543  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      ...|..+|..|...++...|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+..
T Consensus       562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence            35566689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 006562          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (640)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (640)
                      .+|.|.+|+..+...+............++.++.+
T Consensus       642 d~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir  676 (1238)
T KOG1127|consen  642 DNGKYKEALDALGLIIYAFSLERTGQNGLAESVIR  676 (1238)
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            99999999999998887655544444455555443

>PLN02789 farnesyltranstransferase

Probab=99.77  E-value=1e-16  Score=154.23  Aligned_cols=222  Identities=16%  Similarity=0.160  Sum_probs=201.1

Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 006562          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDL  472 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~  472 (640)
                      .++|.+|..+|+.++..                 .+.+++|+..+.++++.+|.+..+|...+.++..+| .+++++..+
T Consensus        33 ~~~~~~a~~~~ra~l~~-----------------~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~   95 (320)
T PLN02789         33 TPEFREAMDYFRAVYAS-----------------DERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFA   95 (320)
T ss_pred             CHHHHHHHHHHHHHHHc-----------------CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHH
Confidence            46677888887776653                 467889999999999999999999999999999998 689999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562          473 SKALEFEPNSADILHERGIVNFKFKDF--NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (640)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  550 (640)
                      .+++..+|++..+|...+.++...|+.  ++++.++.++++.+|++..+|..++.++...|++++++.++.++++.+|.+
T Consensus        96 ~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N  175 (320)
T PLN02789         96 EDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN  175 (320)
T ss_pred             HHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence            999999999999999999999998874  788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh---cCH----HHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCH
Q 006562          551 LEAWGHLTQFYQDL---ANS----EKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       551 ~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~  619 (640)
                      ..+|...+.+....   |.+    ++++.+..+++..+|++..+|..++.++..    .++..+|...+.+++...|++.
T Consensus       176 ~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~  255 (320)
T PLN02789        176 NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHV  255 (320)
T ss_pred             hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcH
Confidence            99999999998776   333    578899999999999999999999999988    4567789999999999999999


Q ss_pred             HHHHHHHHHHHHc
Q 006562          620 ECLYLRASCYHAI  632 (640)
Q Consensus       620 ~~~~~la~~~~~~  632 (640)
                      .++..|+.+|...
T Consensus       256 ~al~~l~d~~~~~  268 (320)
T PLN02789        256 FALSDLLDLLCEG  268 (320)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999763

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.77  E-value=7.7e-17  Score=165.14  Aligned_cols=267  Identities=15%  Similarity=0.115  Sum_probs=184.0

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      ++.....+|.+.+.|..+|.+|...|.|..|++.|.++..++|.+..+.+..+.+....|.|.+|+..+...+.......
T Consensus       585 fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~  664 (1238)
T KOG1127|consen  585 FQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER  664 (1238)
T ss_pred             HHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            34445667777777777777777777777777777777777777777777777777777777777777777776665555


Q ss_pred             HHHHHHHHHHHHc-------CCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHh-------------------
Q 006562          450 EAWKRRGQARAAL-------GESVEAIQDLSKALEFE--------PNSADILHERGIVNFK-------------------  495 (640)
Q Consensus       450 ~~~~~la~~~~~~-------~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~-------------------  495 (640)
                      .+...+|.++.+.       |-...|...+++.++..        -++...|..+|....-                   
T Consensus       665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~  744 (1238)
T KOG1127|consen  665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSK  744 (1238)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHH
Confidence            5666666665543       44555666666665431        1111122222211110                   


Q ss_pred             ----cCCH------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHccCcccHHHHHHH
Q 006562          496 ----FKDF------NAAVEDLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (640)
Q Consensus       496 ----~~~~------~~A~~~~~~al~~~~~~~~~~~~la~~~~~--------~g~~~~A~~~~~~a~~~~~~~~~~~~~l  557 (640)
                          ++..      --+.+++-..+++.. ++..|+++|.-|..        +.+...|+.++.++++...++...|..+
T Consensus       745 q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaL  823 (1238)
T KOG1127|consen  745 QLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNAL  823 (1238)
T ss_pred             HHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHH
Confidence                0000      112222222222211 24567777777665        2233578899999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccc
Q 006562          558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE  637 (640)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  637 (640)
                      |.+ ...|++.-|...|-+.+...|.....|.++|.++....+++-|...|.++..++|.+...|...+.+....|+.-+
T Consensus       824 GVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~  902 (1238)
T KOG1127|consen  824 GVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIE  902 (1238)
T ss_pred             HHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHH
Confidence            988 5668899999999999999999999999999999999999999999999999999999999999888888886544


Q ss_pred             c
Q 006562          638 A  638 (640)
Q Consensus       638 A  638 (640)
                      +
T Consensus       903 ~  903 (1238)
T KOG1127|consen  903 R  903 (1238)
T ss_pred             H
Confidence            3

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.76  E-value=6.3e-16  Score=155.12  Aligned_cols=243  Identities=18%  Similarity=0.155  Sum_probs=205.6

Q ss_pred             hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                      .......|.-......+|..|...|+|+.|+..++.+++.        .|.-......+|.+|...+++.+|+..|++++
T Consensus       189 ~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL  268 (508)
T KOG1840|consen  189 KGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL  268 (508)
T ss_pred             HhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3445567777778888999999999999999999999987        45545556669999999999999999999999


Q ss_pred             HhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          443 QSN--------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       443 ~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~  506 (640)
                      .+.        |.-+.++..||.+|...|++++|..++++++++...        -...+..++.++..++++++|..++
T Consensus       269 ~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~  348 (508)
T KOG1840|consen  269 TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLL  348 (508)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence            752        334568999999999999999999999999987422        2446788899999999999999999


Q ss_pred             HHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------cccHHHHHHHHHHHHHhcCHHHH
Q 006562          507 SACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKA  570 (640)
Q Consensus       507 ~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A  570 (640)
                      ++++++.        +.-+..+.++|.+|..+|++++|..++++++.+.        +.....+..+|..|.+.+++.+|
T Consensus       349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a  428 (508)
T KOG1840|consen  349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEA  428 (508)
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchH
Confidence            9998763        2335788899999999999999999999999874        33366788999999999999999


Q ss_pred             HHHHHHHHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          571 LECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       571 ~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      ...|.++..+.       |+....+.+||.+|..+|++++|+++.++++.
T Consensus       429 ~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  429 EQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            99999887652       34456899999999999999999999999873

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.1e-17  Score=153.86  Aligned_cols=262  Identities=17%  Similarity=0.194  Sum_probs=222.1

Q ss_pred             hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH-
Q 006562          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI-  442 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-  442 (640)
                      .+.-..+..++...|.++..|...+..++..|+|++|.-..++.++++|..+......+.|+...++..+|.+.++..- 
T Consensus        66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~  145 (486)
T KOG0550|consen   66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQA  145 (486)
T ss_pred             HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence            4444557777888898899999999999999999999999999999999999999999999999999888888777322 


Q ss_pred             ----H-------hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006562          443 ----Q-------SN------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (640)
Q Consensus       443 ----~-------~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  505 (640)
                          .       +.      |....+...-+.++...|++++|...--..+++++.+.++++..|.++...++.+.|+.+
T Consensus       146 ~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h  225 (486)
T KOG0550|consen  146 YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH  225 (486)
T ss_pred             hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH
Confidence                0       00      222345556788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHH
Q 006562          506 LSACVKLDKENK------------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEK  569 (640)
Q Consensus       506 ~~~al~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~  569 (640)
                      +++++.++|+..            ..+...|.-.++.|++.+|.+.|..++.++|++    ...|.+++.+...+|+..+
T Consensus       226 f~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~e  305 (486)
T KOG0550|consen  226 FQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLRE  305 (486)
T ss_pred             HhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchh
Confidence            999999998764            345667888899999999999999999999987    5567888999999999999


Q ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 006562          570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (640)
Q Consensus       570 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  626 (640)
                      |+..++.++.++|....++...|.++..+++|++|++.|+++++...+ .+....+.
T Consensus       306 aisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~  361 (486)
T KOG0550|consen  306 AISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLR  361 (486)
T ss_pred             hhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHH
Confidence            999999999999999999999999999999999999999999987665 43333333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.75  E-value=1.6e-14  Score=142.36  Aligned_cols=386  Identities=15%  Similarity=0.109  Sum_probs=279.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHcccCchhH-HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562           43 LAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (640)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~  121 (640)
                      .-+.|..++|++.+...+..+...|.+.. ....|..+..+|+-++|...+..++..||.+.-.|.-+|.++....+|++
T Consensus        14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~e   93 (700)
T KOG1156|consen   14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDE   93 (700)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHH
Confidence            33568899999999999999997777654 77889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccc
Q 006562          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (640)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (640)
                      |+++|+.|+.+.|+...-+..+.-|...+.+.                                                
T Consensus        94 aiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~------------------------------------------------  125 (700)
T KOG1156|consen   94 AIKCYRNALKIEKDNLQILRDLSLLQIQMRDY------------------------------------------------  125 (700)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh------------------------------------------------
Confidence            99999999777776643332221111111100                                                


Q ss_pred             cCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcc
Q 006562          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (640)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (640)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (700)
T KOG1156|consen  126 --------------------------------------------------------------------------------  125 (700)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHH
Q 006562          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (640)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  361 (640)
                                                                                                      
T Consensus       126 --------------------------------------------------------------------------------  125 (700)
T KOG1156|consen  126 --------------------------------------------------------------------------------  125 (700)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHccCHHH
Q 006562          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED---PMY-----PEALIGRGTARAFQRELEA  433 (640)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~-----~~~~~~la~~~~~~g~~~~  433 (640)
                        ...........+..|..-..|+..|..+.-.|++..|..+.+...+..   |+.     .........++...|.+++
T Consensus       126 --~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~  203 (700)
T KOG1156|consen  126 --EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK  203 (700)
T ss_pred             --hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence              000012223345678888899999999999999999999998887755   332     3456667777788888888


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHh
Q 006562          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV-EDLSACVKL  512 (640)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~  512 (640)
                      |++.+..--..--+........|.++..++++++|...+...+..+|++...+..+-.++....+.-+++ ..|...-+.
T Consensus       204 ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~  283 (700)
T KOG1156|consen  204 ALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK  283 (700)
T ss_pred             HHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence            8887766443333334455668999999999999999999999999999888888777776334444454 555555444


Q ss_pred             CCCcHH-------------HHHHHHHHH---H-------------HcCCHHHHHHHHHHHHc-------cC---------
Q 006562          513 DKENKS-------------AYTYLGLAL---S-------------SIGEYKKAEEAHLKAIQ-------LD---------  547 (640)
Q Consensus       513 ~~~~~~-------------~~~~la~~~---~-------------~~g~~~~A~~~~~~a~~-------~~---------  547 (640)
                      .|....             ....+..++   .             -..+..+ ...+++.+.       -.         
T Consensus       284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~  362 (700)
T KOG1156|consen  284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDG  362 (700)
T ss_pred             CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH-hHHHHHHHHHHHhhcccccCCCccccc
Confidence            433210             000000000   0             0111111 112222221       11         


Q ss_pred             ---ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHH
Q 006562          548 ---RNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (640)
Q Consensus       548 ---~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (640)
                         |-.  ...++.++.-+...|+++.|..+++.++...|..++.+...|.++...|++++|..++..+.+++-.|.-+-
T Consensus       363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~IN  442 (700)
T KOG1156|consen  363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAIN  442 (700)
T ss_pred             ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHH
Confidence               222  234467888899999999999999999999999999999999999999999999999999999987776666


Q ss_pred             HHHHHHHHHcCCccccc
Q 006562          623 YLRASCYHAIGEYREAV  639 (640)
Q Consensus       623 ~~la~~~~~~g~~~~Al  639 (640)
                      -.-|....+.++.++|.
T Consensus       443 sKcAKYmLrAn~i~eA~  459 (700)
T KOG1156|consen  443 SKCAKYMLRANEIEEAE  459 (700)
T ss_pred             HHHHHHHHHccccHHHH
Confidence            56777777777777764

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.73  E-value=1.1e-14  Score=131.71  Aligned_cols=247  Identities=20%  Similarity=0.186  Sum_probs=219.3

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      +-.+...+|...+.++.+|..+.+.|..+.|+.+-+..+. .|+.     ..+...+|.-|+..|-++.|...|....+.
T Consensus        58 F~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de  136 (389)
T COG2956          58 FLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE  136 (389)
T ss_pred             HHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc
Confidence            3444567888999999999999999999999999987776 4443     467889999999999999999999999876


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (640)
Q Consensus       445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  519 (640)
                      ...-..+...+..+|....+|++|++..++..++.+..     ...+..++..+....+.+.|+..+.++++.+|++..+
T Consensus       137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRA  216 (389)
T COG2956         137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRA  216 (389)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceeh
Confidence            65667789999999999999999999999999998876     3467788888888999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (640)
                      -..+|.++...|+|+.|++.++.+++.+|.. +.+...+..+|...|+.++.+..+.++.+..+. +.+-..++..-...
T Consensus       217 si~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~  295 (389)
T COG2956         217 SIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQ  295 (389)
T ss_pred             hhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHh
Confidence            9999999999999999999999999999987 778889999999999999999999999988875 45566677777777


Q ss_pred             CCHHHHHHHHHHhhccCCCC
Q 006562          599 GQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~  618 (640)
                      .-.+.|..++.+-+...|+-
T Consensus       296 ~G~~~Aq~~l~~Ql~r~Pt~  315 (389)
T COG2956         296 EGIDAAQAYLTRQLRRKPTM  315 (389)
T ss_pred             hChHHHHHHHHHHHhhCCcH
Confidence            77889999999999999973

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.73  E-value=1.2e-14  Score=159.22  Aligned_cols=391  Identities=10%  Similarity=-0.023  Sum_probs=288.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcC
Q 006562           39 ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPT-LLQAYILKGCAFSALG  117 (640)
Q Consensus        39 ~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~-~~~a~~~~g~~y~~~g  117 (640)
                      .-.-+.-|.+.|++++|...|++..+  |+...|.....+|.+.|++++|+..+++.++..+. +...+..+-.++...|
T Consensus       161 ~n~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~  238 (697)
T PLN03081        161 MNRVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG  238 (697)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence            33445677899999999999998854  67777999999999999999999999999876532 3457777777888899


Q ss_pred             CHHHHHHHHHHHHhhccCC-hHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCC
Q 006562          118 RKEEALSVWEKGYEHALHQ-SADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSD  196 (640)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (640)
                      ..+.+...+..+++..... ......++...-.......+.   ..+.                                
T Consensus       239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~---~vf~--------------------------------  283 (697)
T PLN03081        239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDAR---CVFD--------------------------------  283 (697)
T ss_pred             cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHH---HHHH--------------------------------
Confidence            9999988888776554221 111222222222111111111   0000                                


Q ss_pred             ccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccc
Q 006562          197 ICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQ  276 (640)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (640)
                                      ..           .. +......                                         
T Consensus       284 ----------------~m-----------~~-~~~vt~n-----------------------------------------  294 (697)
T PLN03081        284 ----------------GM-----------PE-KTTVAWN-----------------------------------------  294 (697)
T ss_pred             ----------------hC-----------CC-CChhHHH-----------------------------------------
Confidence                            00           00 0000000                                         


Q ss_pred             cCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhH
Q 006562          277 SSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLK  356 (640)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  356 (640)
                                                                        .....+...|+.++|...+.++..      
T Consensus       295 --------------------------------------------------~li~~y~~~g~~~eA~~lf~~M~~------  318 (697)
T PLN03081        295 --------------------------------------------------SMLAGYALHGYSEEALCLYYEMRD------  318 (697)
T ss_pred             --------------------------------------------------HHHHHHHhCCCHHHHHHHHHHHHH------
Confidence                                                              001111233445555554443321      


Q ss_pred             HHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHH
Q 006562          357 ETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQRELEAAI  435 (640)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~  435 (640)
                                        ..-..+...+..+...+...|++++|.+++..+++.. +.+..++..+...|.+.|++++|.
T Consensus       319 ------------------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~  380 (697)
T PLN03081        319 ------------------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR  380 (697)
T ss_pred             ------------------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence                              1122345567778889999999999999999999875 556788899999999999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006562          436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (640)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  514 (640)
                      ..|++..+   .+...|..+...|...|+.++|++.|++...... .+...+..+...+...|..++|..+|+...+..+
T Consensus       381 ~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g  457 (697)
T PLN03081        381 NVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR  457 (697)
T ss_pred             HHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence            99998754   3567899999999999999999999999887532 2456788888899999999999999999986532


Q ss_pred             --CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562          515 --ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (640)
Q Consensus       515 --~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  592 (640)
                        .+...|..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+.+.|...+++.+...|++...|..++
T Consensus       458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~  535 (697)
T PLN03081        458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL  535 (697)
T ss_pred             CCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence              24467888999999999999999999875 2334 4667999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHhhcc
Q 006562          593 LLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      .+|...|++++|.+.++...+.
T Consensus       536 ~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        536 NLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHc
Confidence            9999999999999999987643

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.73  E-value=6.8e-16  Score=154.86  Aligned_cols=230  Identities=21%  Similarity=0.227  Sum_probs=195.0

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 006562          410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--  479 (640)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--  479 (640)
                      .+|.-..+...++..|...|+|++|+..++.+++.        .|.-......+|.+|..++++.+|+..|++++.+.  
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            35666777888999999999999999999999988        45445566679999999999999999999999862  


Q ss_pred             ---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          480 ---PN---SADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       480 ---p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                         +.   ...++.++|.+|...|++++|..++++++++.        |.-...+..++.++..++++++|..++++++.
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence               33   35578999999999999999999999998863        22346678889999999999999999999987


Q ss_pred             cC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562          546 LD--------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKAIKDLS  609 (640)
Q Consensus       546 ~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~  609 (640)
                      +.        +..+..+.++|.+|..+|++++|.+++++++...        +.....+..+|..+.+.+++.+|...|.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            63        2346788999999999999999999999999764        2335678899999999999999999998


Q ss_pred             Hhhcc-------CCCCHHHHHHHHHHHHHcCCccccc
Q 006562          610 SGLGI-------DPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       610 ~al~~-------~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++..+       .|+-...+.+|+.+|..+|+++.|+
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~  470 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE  470 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence            88754       3444578899999999999999986

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=4.9e-13  Score=127.03  Aligned_cols=451  Identities=14%  Similarity=0.098  Sum_probs=322.0

Q ss_pred             HhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 006562           47 CSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (640)
Q Consensus        47 ~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~  125 (640)
                      -.++++++|.+.|++||..+ .+...+..-|.+-++.++-..|....++|+.+-|.--+.|+..-..=..+|+..-|.+.
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi  163 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI  163 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence            47899999999999999999 88899999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHhhccCChHHHHHHHhHHHHHHHHhhhccc-----h-----------hhhhhcccccc--cccccCCCCCCCcchh
Q 006562          126 WEKGYEHALHQSADLKQFLELEELLTAAKQDRSV-----T-----------CEYDVSNSMSS--LTVSESGLNANDKMSE  187 (640)
Q Consensus       126 ~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~-----------~~~~~~~~~~~--~~~~~~~~~~~~~~~~  187 (640)
                      |++-++..|++..=... +...........+.+.     .           ..+........  -.....+....+....
T Consensus       164 ferW~~w~P~eqaW~sf-I~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~  242 (677)
T KOG1915|consen  164 FERWMEWEPDEQAWLSF-IKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE  242 (677)
T ss_pred             HHHHHcCCCcHHHHHHH-HHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence            99999999987542211 1111111100000000     0           00110000000  0000000000000000


Q ss_pred             hhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCcccccc
Q 006562          188 TSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHAS  267 (640)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (640)
                      .                                              ..+..++.                         
T Consensus       243 ~----------------------------------------------e~lfvaFA-------------------------  251 (677)
T KOG1915|consen  243 A----------------------------------------------EILFVAFA-------------------------  251 (677)
T ss_pred             H----------------------------------------------HHHHHHHH-------------------------
Confidence            0                                              00000000                         


Q ss_pred             ccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHh
Q 006562          268 RDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSK  347 (640)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  347 (640)
                        .-+.                ...+.+++..+                         -++....+..++..+...-+..
T Consensus       252 --~fEe----------------~qkE~ERar~i-------------------------ykyAld~~pk~raeeL~k~~~~  288 (677)
T KOG1915|consen  252 --EFEE----------------RQKEYERARFI-------------------------YKYALDHIPKGRAEELYKKYTA  288 (677)
T ss_pred             --HHHH----------------HHHHHHHHHHH-------------------------HHHHHHhcCcccHHHHHHHHHH
Confidence              0000                00000000000                         0112223334445566667777


Q ss_pred             hHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-------HHHH
Q 006562          348 LSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE-------ALIG  420 (640)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~  420 (640)
                      .++++|..........+..++.++..+..+|.+.+.|+..-..--..|+.+.-.+.|++++..-|....       +++.
T Consensus       289 fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLW  368 (677)
T KOG1915|consen  289 FEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLW  368 (677)
T ss_pred             HHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Confidence            788888877777767778888899999999999999999999888999999999999999987776432       2222


Q ss_pred             HHHHH---HHccCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          421 RGTAR---AFQRELEAAISDFTEAIQSNPSA----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       421 la~~~---~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      +-.++   ....+.+.+...|+.++++-|..    +.+|...|.....+.+...|.+.+-.++...|.+ ........+-
T Consensus       369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelE  447 (677)
T KOG1915|consen  369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELE  447 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHH
Confidence            22222   34578999999999999999863    6788889999999999999999999999999976 4566667788


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-H-HHHHHHHHHHHHhcCHHHHH
Q 006562          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-L-EAWGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~-~~~~~la~~~~~~g~~~~A~  571 (640)
                      .++++++.+...|++-++..|.+..+|...|..-..+|+.+.|...|+-|+....-+ | ..|-.....-...|.++.|.
T Consensus       448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR  527 (677)
T KOG1915|consen  448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKAR  527 (677)
T ss_pred             HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHH
Confidence            899999999999999999999999999999999999999999999999998865433 2 34445556667889999999


Q ss_pred             HHHHHHHHhCCCChHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHhhcc
Q 006562          572 ECLQQVLYIDKRFSKAYHLRGLLLH-----GLG-----------QHKKAIKDLSSGLGI  614 (640)
Q Consensus       572 ~~~~~al~~~~~~~~~~~~la~~~~-----~~g-----------~~~~A~~~~~~al~~  614 (640)
                      .+|++.++..+... +|...|..-.     +.+           +...|...|++|...
T Consensus       528 ~LYerlL~rt~h~k-vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~  585 (677)
T KOG1915|consen  528 ALYERLLDRTQHVK-VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY  585 (677)
T ss_pred             HHHHHHHHhcccch-HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence            99999999887654 7777777655     445           677888899888754

>PLN03077 Protein ECB2; Provisional

Probab=99.71  E-value=5.7e-14  Score=157.84  Aligned_cols=250  Identities=11%  Similarity=-0.038  Sum_probs=196.8

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (640)
                      .+...+..+...|.+.|++++|.++|++..+   .+...|..+...|...|++++|+..|++.....+.+...+..+-..
T Consensus       422 ~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a  498 (857)
T PLN03077        422 SYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSA  498 (857)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHH
Confidence            4456667777888888888888888887643   3456777888888888888888888888876555556666667777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEP-NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      +...|..+.+.+.+..+++..- .+......+...|.+.|++++|...|+..    +.+...|..+...|...|+.++|+
T Consensus       499 ~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~  574 (857)
T PLN03077        499 CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAV  574 (857)
T ss_pred             HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHH
Confidence            7888888888888888877542 23456667888999999999999999886    567889999999999999999999


Q ss_pred             HHHHHHHcc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          538 EAHLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       538 ~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      ..|++....  .|+ ...+..+...+...|..++|..+|+...+..+  .+...|..+..++.+.|++++|.+.+++. .
T Consensus       575 ~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~  652 (857)
T PLN03077        575 ELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-P  652 (857)
T ss_pred             HHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-C
Confidence            999998864  454 45566666778899999999999999885433  34578899999999999999999999986 3


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          614 IDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       614 ~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ..|+ ..+|..+...+...|+.+.|
T Consensus       653 ~~pd-~~~~~aLl~ac~~~~~~e~~  676 (857)
T PLN03077        653 ITPD-PAVWGALLNACRIHRHVELG  676 (857)
T ss_pred             CCCC-HHHHHHHHHHHHHcCChHHH
Confidence            5665 67787777788777776643

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.68  E-value=1.4e-14  Score=142.81  Aligned_cols=250  Identities=20%  Similarity=0.197  Sum_probs=219.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      -..++..+.-.+..++|...++..+.+++..|.+++.+...|..+..+|+-++|..+...++..++.+...|..+|.++.
T Consensus         7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34567778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (640)
                      ...+|++|+++|+.|+.+.|++..++..++.+..++++++.....-.+.++..|..-..|...+..+...|++..|...+
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHccC---ccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          541 LKAIQLD---RNF-----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       541 ~~a~~~~---~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      +......   |+.     .........+....|.+++|++.+..--..--+........|.++.+++++++|...|...+
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll  246 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL  246 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence            8776654   322     34455667777888888888887766543333445566778999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHH
Q 006562          613 GIDPSNIECLYLRASCYH  630 (640)
Q Consensus       613 ~~~p~~~~~~~~la~~~~  630 (640)
                      ..+|++...+..+-.++.
T Consensus       247 ~rnPdn~~Yy~~l~~~lg  264 (700)
T KOG1156|consen  247 ERNPDNLDYYEGLEKALG  264 (700)
T ss_pred             hhCchhHHHHHHHHHHHH
Confidence            999999988877766664

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=2.1e-12  Score=126.34  Aligned_cols=253  Identities=14%  Similarity=0.126  Sum_probs=167.5

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED--------PM-------YPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      +.+.+|+.|..+...|+|.+|++.+++++++.        .+       -..+...++.++..+|+.++|...|...++.
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            46677888888888888888888888884321        11       1245677888888888888888888888877


Q ss_pred             CCCcHHH-------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          445 NPSAGEA-------------------------------------------------WKRRGQARAALGESVEAIQDLSKA  475 (640)
Q Consensus       445 ~p~~~~~-------------------------------------------------~~~la~~~~~~~~~~~A~~~~~~a  475 (640)
                      +|.+...                                                 +.+.+.+.+..+.-+.+.+...+.
T Consensus       254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l  333 (652)
T KOG2376|consen  254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL  333 (652)
T ss_pred             cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence            7655321                                                 111122222222222222222222


Q ss_pred             HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------C
Q 006562          476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQL-------D  547 (640)
Q Consensus       476 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-------~  547 (640)
                      -...|....-.........+...+.+|..++......+|.+ ..+.+.++.+.+..|+++.|+..+......       .
T Consensus       334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~  413 (652)
T KOG2376|consen  334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA  413 (652)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence            22222222222222333333346888899999988888887 677888899999999999999999833311       1


Q ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      ...|.+-..+-.++...++.+.|...+..++...       +.....+...+.+..+.|+-++|...+++.++.+|++.+
T Consensus       414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~  493 (652)
T KOG2376|consen  414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTD  493 (652)
T ss_pred             ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHH
Confidence            2234555555666777777777777777776542       222345667788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 006562          621 CLYLRASCYHAI  632 (640)
Q Consensus       621 ~~~~la~~~~~~  632 (640)
                      ++..+...|...
T Consensus       494 ~l~~lV~a~~~~  505 (652)
T KOG2376|consen  494 LLVQLVTAYARL  505 (652)
T ss_pred             HHHHHHHHHHhc
Confidence            998888877654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.66  E-value=1.4e-14  Score=136.58  Aligned_cols=190  Identities=16%  Similarity=0.162  Sum_probs=157.9

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH--
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE--  450 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--  450 (640)
                      .++..+..++.+|..++..|++++|+..|++++..+|+++   .+++.+|.++...|++++|+..++++++..|+++.  
T Consensus        28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  107 (235)
T TIGR03302        28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD  107 (235)
T ss_pred             cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence            4566788999999999999999999999999999999876   57899999999999999999999999999998765  


Q ss_pred             -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          451 -AWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (640)
Q Consensus       451 -~~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (640)
                       +++.+|.++...        |++++|+..+++++..+|++...+..+..+....+    .             ......
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~  170 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKEL  170 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHH
Confidence             788999999876        78999999999999999998665433322211110    0             112345


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (640)
                      .+|.++...|++.+|+..+++++...|+.   +.+++.+|.++...|++++|..+++......|
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            78889999999999999999999887654   68999999999999999999998888766554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.66  E-value=3.3e-14  Score=134.14  Aligned_cols=189  Identities=16%  Similarity=0.059  Sum_probs=159.1

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q 006562          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---  484 (640)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---  484 (640)
                      ++..+..++.+|..+...|++++|+..+++++...|.++   .+++.+|.++...|++++|+..++++++..|+++.   
T Consensus        29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  108 (235)
T TIGR03302        29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY  108 (235)
T ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence            455688999999999999999999999999999999875   57899999999999999999999999999998765   


Q ss_pred             HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH
Q 006562          485 ILHERGIVNFKF--------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (640)
Q Consensus       485 ~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  556 (640)
                      +++.+|.++...        |++++|+..+++++..+|++...+..+..+....+    .             .......
T Consensus       109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~-------------~~~~~~~  171 (235)
T TIGR03302       109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----R-------------LAGKELY  171 (235)
T ss_pred             HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----H-------------HHHHHHH
Confidence            688899999876        78999999999999999998766543332221110    0             1223457


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          557 LTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      +|.++...|++.+|+..+++++...|+.   +.+++.+|.++...|++++|..+++......|
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            8899999999999999999999997754   57999999999999999999999988776655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.65  E-value=1.3e-13  Score=139.28  Aligned_cols=262  Identities=15%  Similarity=0.065  Sum_probs=184.3

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCcHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI----QSNPSAGEAW  452 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~  452 (640)
                      +....+..+..|..++..|++++|...++++++.+|++..++.. +..+...|++..+.....+++    ...|....++
T Consensus        39 ~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  117 (355)
T cd05804          39 RATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLL  117 (355)
T ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHH
Confidence            34456677788888999999999999999999999998877665 555555555444444444444    4556666777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALS  528 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~  528 (640)
                      ..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++    ..+..+|.++.
T Consensus       118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            78888999999999999999999999999988889999999999999999999999998876433    34567899999


Q ss_pred             HcCCHHHHHHHHHHHHccCcc--cHHHHH---HHHHHHHHhcCHHHHHHH--H-HHHHHhCCC--ChHHHHHHHHHHHhc
Q 006562          529 SIGEYKKAEEAHLKAIQLDRN--FLEAWG---HLTQFYQDLANSEKALEC--L-QQVLYIDKR--FSKAYHLRGLLLHGL  598 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~--~~~~~~---~la~~~~~~g~~~~A~~~--~-~~al~~~~~--~~~~~~~la~~~~~~  598 (640)
                      ..|++++|+..+++++...|.  ......   .+...+...|....+...  + .......+.  ........+.++...
T Consensus       198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  277 (355)
T cd05804         198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA  277 (355)
T ss_pred             HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence            999999999999998766552  221111   122222333432222222  1 111111111  223334678888899


Q ss_pred             CCHHHHHHHHHHhhccCCC---------CHHHHHHHHHHHHHcCCccccc
Q 006562          599 GQHKKAIKDLSSGLGIDPS---------NIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       599 g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |+.++|...++........         ........+.++...|++++|+
T Consensus       278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~  327 (355)
T cd05804         278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATAL  327 (355)
T ss_pred             CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHH
Confidence            9999999999887653221         2456677889999999998885

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=1.4e-14  Score=123.54  Aligned_cols=126  Identities=15%  Similarity=0.136  Sum_probs=91.3

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      ..++++++.+|++   +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|+
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4566677766653   4456777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (640)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (640)
                      ++.+++.+|.++...|++++|+..|++++...|+++..+..++.+...+
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777776665543

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.60  E-value=3.2e-13  Score=136.34  Aligned_cols=205  Identities=14%  Similarity=0.043  Sum_probs=131.7

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (640)
                      +|..+..+..+|..+...|+.+.+...+.++.+..|.+   .+..+..+.++...|++++|...++++++.+|.+..++.
T Consensus         2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~   81 (355)
T cd05804           2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK   81 (355)
T ss_pred             CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence            56666677777777777777777777776666655533   445666677777777777777777777777777765555


Q ss_pred             HHHHHHHHcCCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          454 RRGQARAALGES----VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (640)
Q Consensus       454 ~la~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (640)
                      . +..+...|++    ..+...+.......|.....+..+|.++...|++++|...++++++..|+++.++..+|.++..
T Consensus        82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~  160 (355)
T cd05804          82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM  160 (355)
T ss_pred             H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            4 4444444333    3333333332234455555666667777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHccCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562          530 IGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (640)
                      .|++++|+.++.+++...|..+    ..+..+|.++...|++++|+..+++++...|
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            7777777777777776655322    2345667777777777777777777655444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.60  E-value=3.3e-14  Score=121.25  Aligned_cols=124  Identities=19%  Similarity=0.175  Sum_probs=72.2

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562          402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN  481 (640)
Q Consensus       402 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  481 (640)
                      .+|+++++.+|++   ++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++.++|.
T Consensus        14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~   90 (144)
T PRK15359         14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS   90 (144)
T ss_pred             HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            3455555555543   3345555566666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      ++.+++.+|.++...|++++|+..|++++...|+++..+..++.+..
T Consensus        91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            66666666666666666666666666666666665555555555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=1.4e-14  Score=121.68  Aligned_cols=117  Identities=22%  Similarity=0.238  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCch------hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHH
Q 006562           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEI------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILK  109 (640)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~------~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~  109 (640)
                      +.+.+..+..+|.+|+|.+|..-|+.||++.|..      .+|.|||.|+++++.++.||.+|.+||+++|++.+|..++
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            3455577889999999999999999999998432      3388999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHH
Q 006562          110 GCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTA  152 (640)
Q Consensus       110 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~  152 (640)
                      +.+|.++.+|++|+..|++.+++.|..-.....+.+|.|....
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e  217 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE  217 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999998888888888776443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=8.4e-13  Score=115.80  Aligned_cols=204  Identities=14%  Similarity=0.030  Sum_probs=146.8

Q ss_pred             cCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          394 EGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  467 (640)
                      ..+.++-++++...+..      .++....+-....+....|+.+-|..++++.....|.+..+....|..+...|++++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence            34556666666665543      233334455556666677777778788777777777777777777777777788888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  547 (640)
                      |+++|+..++-+|.+..++...-.+...+|+..+|++.+...++..+.+.++|..++.+|+..|+|++|.-++++.+-+.
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~  184 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ  184 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence            88888888877777777777777777777777778887777777777788888888888888888888888888877777


Q ss_pred             cccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562          548 RNFLEAWGHLTQFYQDLA---NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (640)
Q Consensus       548 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (640)
                      |.++..+..+|.+++-+|   +..-|.++|.++++++|.+..+++.+-.+...
T Consensus       185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~  237 (289)
T KOG3060|consen  185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA  237 (289)
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence            777777777777776655   45667777777777777666666655544433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.58  E-value=8.1e-11  Score=120.28  Aligned_cols=133  Identities=15%  Similarity=0.062  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...++.+|..|-..|++++|+.++++++...|+.++.++..|.++...|++.+|...++.+..+++.+-.+....+..+.
T Consensus       194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L  273 (517)
T PF12569_consen  194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL  273 (517)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            35668889999999999999999999999999999999999999999999999999999999999999888888999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 006562          461 ALGESVEAIQDLSKALEFEP--NS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLD  513 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  513 (640)
                      +.|+.++|...+....+.+.  ..       .......|.+|.+.|++..|++.|..+.+..
T Consensus       274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF  335 (517)
T ss_pred             HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999988766542  11       1233456899999999999999999887763

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.56  E-value=7.5e-13  Score=117.55  Aligned_cols=176  Identities=17%  Similarity=0.153  Sum_probs=134.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006562          400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE  479 (640)
Q Consensus       400 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  479 (640)
                      +...+-+....+|.+..+ ..++..+...|+-+.+..+..++...+|.+..+...+|......|++..|+..++++....
T Consensus        52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~  130 (257)
T COG5010          52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA  130 (257)
T ss_pred             HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence            555555566667777777 7777777777777777777777777777777777777777777788888888888888777


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (640)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~  559 (640)
                      |+++.+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..+.-.|+++.|..++..+....+.+..+..+++.
T Consensus       131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl  210 (257)
T COG5010         131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL  210 (257)
T ss_pred             CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            77777777788888888888888888888888777777777778877777788877777777777777767777777777


Q ss_pred             HHHHhcCHHHHHHHHHH
Q 006562          560 FYQDLANSEKALECLQQ  576 (640)
Q Consensus       560 ~~~~~g~~~~A~~~~~~  576 (640)
                      +...+|+++.|..+..+
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            77777777777665544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.56  E-value=1.9e-12  Score=137.84  Aligned_cols=210  Identities=17%  Similarity=0.083  Sum_probs=169.0

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      -..+..-+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++..+...  .++...+.+.
T Consensus        20 r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~   97 (906)
T PRK14720         20 RADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL   97 (906)
T ss_pred             hcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence            33445678899999999999999999999999999999999999999999999999999987776665  5555554444


Q ss_pred             -------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006562          450 -------------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (640)
Q Consensus       450 -------------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (640)
                                         .+++.+|.||..+|++++|...++++++.+|+++.++..+|..|... +.++|+.++.+++
T Consensus        98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720         98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence                               78888888888888888888888888888888888888888888888 8888888888887


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH--------------------HHHHHHHHHhcCHHHH
Q 006562          511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW--------------------GHLTQFYQDLANSEKA  570 (640)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--------------------~~la~~~~~~g~~~~A  570 (640)
                      ..              +...+++..+..++.+.+..+|.+...+                    .-+-..|...++|+++
T Consensus       177 ~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~  242 (906)
T PRK14720        177 YR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEV  242 (906)
T ss_pred             HH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHH
Confidence            66              5555677777787888777777764432                    1222556677788888


Q ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          571 LECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       571 ~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      +.+++.+++.+|.+..+...++.+|.
T Consensus       243 i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        243 IYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            88888888888888888888877776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.55  E-value=9.9e-13  Score=116.79  Aligned_cols=181  Identities=20%  Similarity=0.194  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006562          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (640)
Q Consensus       431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (640)
                      ...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..++++.
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~  127 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA  127 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence            344666677777889999999 9999999999999999999999999999999999889999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562          511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (640)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (640)
                      ...|+++.+|..+|.+|.+.|+++.|...|.+++++.|..+.+..++|..+.-.|+++.|..++..+....+.+..+..+
T Consensus       128 ~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~N  207 (257)
T COG5010         128 RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQN  207 (257)
T ss_pred             ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888889999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhh
Q 006562          591 RGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al  612 (640)
                      ++.+...+|++.+|.....+-+
T Consensus       208 LAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         208 LALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHhhcCChHHHHhhccccc
Confidence            9999999999999998776543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.55  E-value=1.3e-11  Score=125.95  Aligned_cols=259  Identities=16%  Similarity=0.094  Sum_probs=198.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      .+.++..+.++...|++++|++++......-.+....+...|.++..+|++++|...|...++.+|++...+..+..+..
T Consensus         4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence            46777888999999999999999999888888888999999999999999999999999999999999998888888773


Q ss_pred             Hc-----CCHHHHHHHHHHHHHhCCCCHH--------------------------------HHHHHHHHHHhcCCHHHHH
Q 006562          461 AL-----GESVEAIQDLSKALEFEPNSAD--------------------------------ILHERGIVNFKFKDFNAAV  503 (640)
Q Consensus       461 ~~-----~~~~~A~~~~~~al~~~p~~~~--------------------------------~~~~la~~~~~~~~~~~A~  503 (640)
                      ..     .+.+.-...|+......|....                                +...+-.+|.......-..
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence            33     2466677788877776664321                                1111112222111111111


Q ss_pred             HHHHHHHHh---------------CCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          504 EDLSACVKL---------------DKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       504 ~~~~~al~~---------------~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      ..+......               .|..  ..+++.++..|-..|++++|+.++++++...|..++.+...|.++...|+
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence            222221111               0111  24567889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC--CC-------HHHHHHHHHHHHHcCCccc
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP--SN-------IECLYLRASCYHAIGEYRE  637 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~-------~~~~~~la~~~~~~g~~~~  637 (640)
                      +.+|...++.+-.+++.+-..-...+..+.+.|+.++|...+......+.  ..       .......|.+|.+.|++..
T Consensus       244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999999999888888889999999999999999887765442  11       1233457889999999988


Q ss_pred             cc
Q 006562          638 AV  639 (640)
Q Consensus       638 Al  639 (640)
                      |+
T Consensus       324 AL  325 (517)
T PF12569_consen  324 AL  325 (517)
T ss_pred             HH
Confidence            76

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.54  E-value=8e-13  Score=119.09  Aligned_cols=122  Identities=17%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHH-HHhcC--HHHHHH
Q 006562          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY-QDLAN--SEKALE  572 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~  572 (640)
                      .++.++++..+++++..+|++...|..+|.++...|++++|+..|++++...|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            334455555555555555555555555555555555555555555555555555555555555542 34444  355555


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      .++++++.+|+++.++..+|..+...|++++|+.+++++++..|.
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            555555555555555555555555555555555555555555444

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.54  E-value=1.3e-12  Score=117.72  Aligned_cols=123  Identities=20%  Similarity=0.258  Sum_probs=72.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCC--HHHHHH
Q 006562          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN-FKFKD--FNAAVE  504 (640)
Q Consensus       428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~~~--~~~A~~  504 (640)
                      .++.++++..++++++.+|++...|..+|.+|...|++++|+..|++++++.|+++.++..+|.++ ...|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            445555666666666666666666666666666666666666666666666666666666666543 44444  356666


Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (640)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  550 (640)
                      .++++++.+|+++.+++.+|..++..|++++|+.+++++++..|.+
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~  177 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR  177 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            6666666666666666666666666666666666666665555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.53  E-value=3.8e-11  Score=112.65  Aligned_cols=253  Identities=15%  Similarity=0.106  Sum_probs=181.0

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-GEAWKRRGQARA  460 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~  460 (640)
                      ......|..-+..|+|..|.....+.-+..+...-++..-+.+.-++|+++.|-.++.++-+..+++ ..+....+.+..
T Consensus        85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll  164 (400)
T COG3071          85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL  164 (400)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence            3444556666667777777777777666555555566666667777777777777777777664332 345556677777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------------
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL----------------------------  512 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----------------------------  512 (640)
                      ..|++..|.....++++..|.++.+......+|...|+|......+.+.-+.                            
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777777777777777777777777777777777777666655443321                            


Q ss_pred             --------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562          513 --------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (640)
Q Consensus       513 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (640)
                                    -.+++.....++.-+...|+.++|.+....+++..-+ +.....++  ...-+++..=++..++.+
T Consensus       245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D-~~L~~~~~--~l~~~d~~~l~k~~e~~l  321 (400)
T COG3071         245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWD-PRLCRLIP--RLRPGDPEPLIKAAEKWL  321 (400)
T ss_pred             chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccC-hhHHHHHh--hcCCCCchHHHHHHHHHH
Confidence                          1223555666777788889999999988888876443 22222222  224577888888888888


Q ss_pred             HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       579 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      +..|++|..+..+|.++.+.+.|.+|..+|+.+++..|+ ...+..+|.++.++|+..+|
T Consensus       322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence            889999999999999999999999999999999998887 56777899999999988776

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=5.3e-12  Score=110.86  Aligned_cols=186  Identities=18%  Similarity=0.124  Sum_probs=161.9

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      ..+..-..+-....+.+..|+.+-|..++++.....|.+..+....|..+...|++++|+++|+..++.+|.+..++...
T Consensus        47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRK  126 (289)
T KOG3060|consen   47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRK  126 (289)
T ss_pred             cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHH
Confidence            34444445556677788889999999999998888899999999999999999999999999999999999998888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---C
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---E  532 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~  532 (640)
                      --+...+|+.-+|++.+...++.++.+.++|..++.+|+..|+|++|.-++++++-..|.++..+..+|.+++-.|   +
T Consensus       127 lAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN  206 (289)
T KOG3060|consen  127 LAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAEN  206 (289)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHH
Confidence            8888889999999999999999999999999999999999999999999999999999999999999999988876   5


Q ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHH
Q 006562          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFY  561 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~  561 (640)
                      +.-|.++|.++++++|.+..+++.+-.+.
T Consensus       207 ~~~arkyy~~alkl~~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  207 LELARKYYERALKLNPKNLRALFGIYLCG  235 (289)
T ss_pred             HHHHHHHHHHHHHhChHhHHHHHHHHHHH
Confidence            66789999999999997777776665543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.53  E-value=1.2e-12  Score=139.31  Aligned_cols=206  Identities=13%  Similarity=-0.057  Sum_probs=180.4

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q 006562          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA-----  483 (640)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----  483 (640)
                      ..+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++...  .++...+.+.     
T Consensus        25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v  102 (906)
T PRK14720         25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV  102 (906)
T ss_pred             cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence            357889999999999999999999999999999999999999999999999999988877666  6666555554     


Q ss_pred             --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          484 --------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       484 --------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                                    .+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+++..   
T Consensus       103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---  178 (906)
T PRK14720        103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---  178 (906)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---
Confidence                          78999999999999999999999999999999999999999999999 999999999999876   


Q ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH--------------------HHHHHHHHHhcCCHHHHHHHHH
Q 006562          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA--------------------YHLRGLLLHGLGQHKKAIKDLS  609 (640)
Q Consensus       550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~  609 (640)
                                 +...+++..+..++.+.+..+|++...                    +.-+=..|...+++++++.+++
T Consensus       179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                       555667888888888888888766543                    2223367788899999999999


Q ss_pred             HhhccCCCCHHHHHHHHHHHHH
Q 006562          610 SGLGIDPSNIECLYLRASCYHA  631 (640)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~  631 (640)
                      .+++.+|+|..+...++.+|..
T Consensus       248 ~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        248 KILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHhcCCcchhhHHHHHHHHHH
Confidence            9999999999999999999973

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=3.4e-09  Score=101.41  Aligned_cols=79  Identities=10%  Similarity=0.059  Sum_probs=68.0

Q ss_pred             HHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562           56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (640)
Q Consensus        56 i~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~  134 (640)
                      ...|+..|..+ -+...+..-|.--..++++..|...+++||..|..+.-.|+..+..=++..+.-.|...|.+|+.+=|
T Consensus        59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP  138 (677)
T KOG1915|consen   59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP  138 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence            34566666666 55566888888999999999999999999999999999999999999999999999999999965544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.51  E-value=9.4e-14  Score=129.52  Aligned_cols=254  Identities=19%  Similarity=0.209  Sum_probs=149.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCcHHHHHHH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMY----PEALIGRGTARAFQRELEAAISDFTEAIQSN------PSAGEAWKRR  455 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l  455 (640)
                      .-|.-+++.|++...+..|+.+++...++    ..+|..+|.+|+.+++|++|+++-.--+.+.      -..+...-++
T Consensus        22 lEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   22 LEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            34666777777777777777777766554    2456667777777777777776643322111      1122334456


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKD--------------------FNAAVEDLSAC  509 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a  509 (640)
                      |..+-..|.|++|+.+..+-+.+...      ...+++++|.+|...|+                    ++.|.++|..-
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            77777777777777766665544221      13466777777765543                    23344444444


Q ss_pred             HHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562          510 VKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV  577 (640)
Q Consensus       510 l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (640)
                      +++....      ..++-++|..|+.+|+|+.|+..-+.-+.+....      ..++.++|.++...|+++.|+++|++.
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            4332211      2345556666677777777776665555543322      346667777777777777777777766


Q ss_pred             HHhCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHcCCccccc
Q 006562          578 LYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       578 l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +.+.-      ..+...+.+|..|.-..++++|+.++.+-+.+..      ....+++.||..+..+|..++|+
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl  335 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL  335 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence            54321      1234556667777777777777777766554422      12356666777777777666654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=3.3e-10  Score=111.30  Aligned_cols=225  Identities=15%  Similarity=0.017  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSN--------PSA-------GEAWKRRGQARAALGESVEAIQDLSKALEF  478 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~  478 (640)
                      ..+.+++.|-++...|+|.+|++.+++++.+.        ...       ..+...++.++..+|+.++|...|...++.
T Consensus       174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~  253 (652)
T KOG2376|consen  174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR  253 (652)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence            46778999999999999999999999995332        111       235677899999999999999999999988


Q ss_pred             CCCCHHHHHHH-------------------------------------------------HHHHHhcCCHHHHHHHHHHH
Q 006562          479 EPNSADILHER-------------------------------------------------GIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       479 ~p~~~~~~~~l-------------------------------------------------a~~~~~~~~~~~A~~~~~~a  509 (640)
                      +|.+.......                                                 +.+.+..+..+.+.+.....
T Consensus       254 ~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~l  333 (652)
T KOG2376|consen  254 NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASL  333 (652)
T ss_pred             cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC
Confidence            87664221111                                                 11111111111111111111


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-------C
Q 006562          510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYI-------D  581 (640)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~  581 (640)
                      -...|....-.........+...+.+|...+......+|.. ..+...++.+...+|+++.|+..+...+..       .
T Consensus       334 p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~  413 (652)
T KOG2376|consen  334 PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA  413 (652)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence            11112211111222333333336778888888888888877 667778888888899999999888833311       1


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc-------cCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          582 KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG-------IDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       582 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ...|.+-..+-..+...++.+.|...+..++.       -.+.....+...+..-.+.|+-++|
T Consensus       414 ~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea  477 (652)
T KOG2376|consen  414 KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA  477 (652)
T ss_pred             ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence            12344444455556666665555555555543       2222234555566666666776665

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.50  E-value=1.2e-12  Score=131.22  Aligned_cols=223  Identities=17%  Similarity=0.138  Sum_probs=199.6

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      -|........++..++..|-...|+.+|++        +..|-....||...|+..+|.....+-++ .|.++..|..+|
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG  464 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG  464 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence            344556677889999999999999999997        45677788999999999999999999998 677888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (640)
                      .+.....-|++|.++.+..      +..+...+|......++|+++.++++..++++|-....|+.+|.+..+.++++.|
T Consensus       465 Dv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            8877766667766666543      3446777888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       537 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      .++|..++..+|++..+|.+++..|...|+-.+|...++++++.+-++..+|.+...+....|.+++|+..+.+.+.+
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998865

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.48  E-value=8.5e-10  Score=101.57  Aligned_cols=382  Identities=15%  Similarity=0.028  Sum_probs=246.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCch--hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYEI--QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~--~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~  119 (640)
                      ++..|+..+||..||..++-.+..+...  ..-.=.|.|++++|+|++|+..|+.+...+.-..+.+..++.+++-+|.|
T Consensus        28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence            5889999999999999999999887222  22334789999999999999999999998877899999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccc
Q 006562          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (640)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (640)
                      .+|...-.+|    |..|.-..-+..+.-...+-+.-+    .++.                                  
T Consensus       108 ~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~----~fh~----------------------------------  145 (557)
T KOG3785|consen  108 IEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRIL----TFHS----------------------------------  145 (557)
T ss_pred             HHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHH----HHHH----------------------------------
Confidence            9999888777    444433222222211111000000    0000                                  


Q ss_pred             cccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (640)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (640)
                                                              .+                                      
T Consensus       146 ----------------------------------------~L--------------------------------------  147 (557)
T KOG3785|consen  146 ----------------------------------------SL--------------------------------------  147 (557)
T ss_pred             ----------------------------------------HH--------------------------------------
Confidence                                                    00                                      


Q ss_pred             cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHH
Q 006562          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (640)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  359 (640)
                                                                              ++..+-.-.+..+.        .+
T Consensus       148 --------------------------------------------------------qD~~EdqLSLAsvh--------Ym  163 (557)
T KOG3785|consen  148 --------------------------------------------------------QDTLEDQLSLASVH--------YM  163 (557)
T ss_pred             --------------------------------------------------------hhhHHHHHhHHHHH--------HH
Confidence                                                                    00000000000011        11


Q ss_pred             HHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 006562          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (640)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (640)
                      ....+.....+.++...+|.-...-..+|.+|+...-|+-+.+.+.--++..|+++.+....+-.+++.=+-..|.....
T Consensus       164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k  243 (557)
T KOG3785|consen  164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK  243 (557)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence            11222333356667777777777888889999999999999999999999999988887777766655422111111111


Q ss_pred             ----------------------------HHHHhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562          440 ----------------------------EAIQSNPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (640)
Q Consensus       440 ----------------------------~al~~~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  487 (640)
                                                  -+++.-|.    -|++..++...|..+++..+|+...+.   ++|..|.-+.
T Consensus       244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~Eyi  320 (557)
T KOG3785|consen  244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYI  320 (557)
T ss_pred             HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhh---cCCCChHHHH
Confidence                                        12233332    256778888888899999998887654   6788888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH---hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHH
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVK---LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~---~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la  558 (640)
                      ..|.+....|+--...++++-+-.   +-      -+.......++.+++...++++.+.++...-....++....++++
T Consensus       321 lKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~A  400 (557)
T KOG3785|consen  321 LKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLA  400 (557)
T ss_pred             HHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHH
Confidence            888888877765544444443322   11      112233455666667777777777777766666666667777777


Q ss_pred             HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          559 QFYQDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (640)
Q Consensus       559 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (640)
                      ..+...|++.+|.+.|-+.-... .+.......+|.+|...+.++-|...+-+
T Consensus       401 QAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk  453 (557)
T KOG3785|consen  401 QAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLK  453 (557)
T ss_pred             HHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHh
Confidence            77777788887777776653332 12233455677777777777777766643

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.45  E-value=2.1e-11  Score=129.26  Aligned_cols=151  Identities=11%  Similarity=0.014  Sum_probs=121.4

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006562          436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (640)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  515 (640)
                      .-........|.+++++..+|.+....|.+++|..+++.++++.|++..++..++.++.+.+++++|+..+++++..+|+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~  152 (694)
T PRK15179         73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS  152 (694)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC
Confidence            33333445567778888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK  586 (640)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  586 (640)
                      +...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-..
T Consensus       153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~  223 (694)
T PRK15179        153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGAR  223 (694)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchH
Confidence            88888888888888888888888888888877888888888888888888888888888888877654443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.45  E-value=3.3e-12  Score=108.93  Aligned_cols=116  Identities=23%  Similarity=0.233  Sum_probs=75.6

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      .+++++..+|++....+.+|..+...|++++|...+++++..+|.++.++..+|.++...|++++|+.++++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      +..++.+|.++...|++++|+..|+++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666666554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.44  E-value=4.1e-10  Score=105.88  Aligned_cols=241  Identities=15%  Similarity=0.066  Sum_probs=199.4

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      +.+..+..+...-.++.-+.+.-+.|+++.|-.++.++-+..++ ...+...++.+....|++..|.....++++..|.+
T Consensus       107 ~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~  186 (400)
T COG3071         107 LRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRH  186 (400)
T ss_pred             HHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCC
Confidence            34444555566667777888899999999999999999888443 46778888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------------------------CCCHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFE------------------------------------------PNSADIL  486 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------------------------------------------p~~~~~~  486 (640)
                      +.+......+|...|+|.....++.+.-+..                                          ..++.+.
T Consensus       187 ~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~  266 (400)
T COG3071         187 PEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV  266 (400)
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH
Confidence            9999999999999999988877776544321                                          1234566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      ..++.-+...|+.++|.+....+++..-+.. ....++  ...-+++..-++..++.+...|+++..+..+|.++.+.+.
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~  343 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL  343 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence            6778888999999999999999998865433 222222  2356788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      |.+|..+|+.++...|+ ...+..+|.++.+.|+..+|.+.++.++..
T Consensus       344 w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         344 WGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            99999999999988875 677899999999999999999999998843

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.43  E-value=5.7e-12  Score=107.44  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=72.8

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       403 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (640)
                      .|++++..+|++..+.+.+|.++...|++++|...+++++..+|.++.++..+|.++...|++++|+..+++++..+|.+
T Consensus         5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~   84 (135)
T TIGR02552         5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD   84 (135)
T ss_pred             hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 006562          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (640)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  518 (640)
                      +..++.+|.++...|++++|+..++++++.+|++..
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        85 PRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            666666666666666666666666666666665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.43  E-value=1.5e-11  Score=130.38  Aligned_cols=157  Identities=10%  Similarity=-0.011  Sum_probs=144.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      .+++.-........|.++.++..+|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..+++++.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~  148 (694)
T PRK15179         69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS  148 (694)
T ss_pred             HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence            34444444455668899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHH
Q 006562          478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW  554 (640)
Q Consensus       478 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  554 (640)
                      ..|++...++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|++++.....-...+
T Consensus       149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999865544443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=4e-12  Score=120.18  Aligned_cols=122  Identities=21%  Similarity=0.249  Sum_probs=103.4

Q ss_pred             HhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccC----c------------hhHHHhHHHHHHhhhcHHHHHHHHHHH
Q 006562           32 VMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY----E------------IQDICNRAFCYSQLELHKHVIRDCDKA   95 (640)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~----~------------~~~~~~~A~~~~~~g~~~~Ai~~~~~a   95 (640)
                      ..+-+...|-.+..+|+.|+|..|+..|++|+..-.    .            ..++.|+|.||++++.|.+|+..|+++
T Consensus       204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv  283 (397)
T KOG0543|consen  204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV  283 (397)
T ss_pred             HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence            444555666677789999999999999999875421    1            112689999999999999999999999


Q ss_pred             HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHH
Q 006562           96 LQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (640)
Q Consensus        96 l~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~  153 (640)
                      |.++|+|++|+||+|++|..+|+++.|+..|++++++.|+.-+....+..|.......
T Consensus       284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988777777776655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.41  E-value=1.2e-12  Score=119.33  Aligned_cols=104  Identities=20%  Similarity=0.170  Sum_probs=96.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHcccC-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562           40 RIELAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (640)
Q Consensus        40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~  118 (640)
                      +-.+.+||++|.|++||+||+++|...| |+..+.|||.+|++++.|..|..+|+.|+.+|-.+.+||.++|.+-..+|+
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            5567799999999999999999999996 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHH
Q 006562          119 KEEALSVWEKGYEHALHQSADLKQF  143 (640)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~  143 (640)
                      ..+|.+.++.+|++.|+..+-.+..
T Consensus       181 ~~EAKkD~E~vL~LEP~~~ELkK~~  205 (536)
T KOG4648|consen  181 NMEAKKDCETVLALEPKNIELKKSL  205 (536)
T ss_pred             HHHHHHhHHHHHhhCcccHHHHHHH
Confidence            9999999999999999865444333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.40  E-value=6.2e-12  Score=124.65  Aligned_cols=111  Identities=23%  Similarity=0.260  Sum_probs=100.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562           40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (640)
Q Consensus        40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~  118 (640)
                      +.....+|..|+|++|+.+|++||+++ .++.+|+++|.+|.++|++++|+.++++++.++|++..+|+++|.+|..+|+
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            345667899999999999999999999 5567799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHhHHHHH
Q 006562          119 KEEALSVWEKGYEHALHQSADLKQFLELEELL  150 (640)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~  150 (640)
                      +++|+..|++++++.|+.+.....+..+....
T Consensus        86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988777666555444

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=6.4e-12  Score=113.83  Aligned_cols=117  Identities=26%  Similarity=0.370  Sum_probs=69.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      +..-|.-++..++|.+|+..|.+||+++|.++..|.+.+.+|.++|.++.|++.++.++.++|.+..+|..||.+|..+|
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g  163 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG  163 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence            34445555555666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      ++++|++.|+++++++|++...+..|..+-...+...
T Consensus       164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            6666666666666666666555555555544444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.40  E-value=8.6e-12  Score=125.26  Aligned_cols=211  Identities=15%  Similarity=0.107  Sum_probs=188.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      .......++..+...|-...|+..|++.-        .|.....||...|+..+|.....+-++ .|.++..|..+|.+.
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL  467 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence            35566789999999999999999999853        455688999999999999999999998 666788888888887


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 006562          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (640)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  573 (640)
                      ....-|++|.++.+..      +..+...+|......++|.++.+.++..++++|-....|+.+|.+..+.++++.|...
T Consensus       468 ~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             cChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence            7776677776666553      3457777888888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |.+++..+|++.++|.+++..|...|+..+|...++++++.+-++...|.+...+....|.+++|+
T Consensus       542 F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  542 FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            999999999999999999999999999999999999999999888999999999999999999886

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.37  E-value=6.2e-12  Score=119.88  Aligned_cols=235  Identities=16%  Similarity=0.069  Sum_probs=171.7

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRG  456 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la  456 (640)
                      ......+.+.+.++..|++...+.....   ..+....+...++..+...++.+.++..++..+....  .++.+....|
T Consensus        33 ~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A  109 (290)
T PF04733_consen   33 NKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA  109 (290)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            3455667778888888888776654433   2233345556666666554566666666655443321  3455666677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EYK  534 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~~  534 (640)
                      .++...|++++|++.+.+.     .+.+.......+++..++++.|.+.++.+-+.+.+..-.....+++....|  .+.
T Consensus       110 ~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~  184 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQ  184 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHH
Confidence            8888889999998888654     567777888889999999999999999988887777766666777777766  588


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH-HHHHHHHHHhhc
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLG  613 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~  613 (640)
                      +|...|++.....+.++..+..++.+++.+|++++|...+.+++..+|.++.++.+++.+...+|+. +.+.+++.+...
T Consensus       185 ~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  185 DAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            9999999988888888888889999999999999999999999999999999999999998888888 667778888888


Q ss_pred             cCCCCHHH
Q 006562          614 IDPSNIEC  621 (640)
Q Consensus       614 ~~p~~~~~  621 (640)
                      .+|+++.+
T Consensus       265 ~~p~h~~~  272 (290)
T PF04733_consen  265 SNPNHPLV  272 (290)
T ss_dssp             HTTTSHHH
T ss_pred             hCCCChHH
Confidence            88887743

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.35  E-value=5.4e-10  Score=108.03  Aligned_cols=153  Identities=20%  Similarity=0.164  Sum_probs=105.4

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (640)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (640)
                      |....+++..+..++..|++++|+..+...+...|+|+..+...+.++...++..+|.+.+++++.++|..+..+..+|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            56666777777777777777777777777777777777777777777777777777777777777777776667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHH
Q 006562          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  571 (640)
                      .+++.|++.+|+..++..+..+|+++..|..++..|..+|+..+|....                 +..|...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence            7777777777777777777777777777777777777777655554432                 33445566667776


Q ss_pred             HHHHHHHHhC
Q 006562          572 ECLQQVLYID  581 (640)
Q Consensus       572 ~~~~~al~~~  581 (640)
                      ..+.++.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            6666666554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=99.34  E-value=1e-11  Score=116.20  Aligned_cols=256  Identities=18%  Similarity=0.151  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------c
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------A  448 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~  448 (640)
                      ..+|..+|.+|+..++|.+|+++-..-+.+      .-..+...-++|.++..+|.|++|+.+..+-+.....      .
T Consensus        55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e  134 (639)
T KOG1130|consen   55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE  134 (639)
T ss_pred             HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh
Confidence            457888999999999999999986543322      1123455678999999999999999999887765432      3


Q ss_pred             HHHHHHHHHHHHHcCCH-------------HH-------HHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHH
Q 006562          449 GEAWKRRGQARAALGES-------------VE-------AIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAA  502 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~-------------~~-------A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A  502 (640)
                      ..+++++|.+|...|+-             ++       |.++|..-+++....      ..++-.+|..|+-+|+|+.|
T Consensus       135 ~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~a  214 (639)
T KOG1130|consen  135 SRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQA  214 (639)
T ss_pred             hHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHH
Confidence            56899999999876542             33       444444444332221      23677788899999999999


Q ss_pred             HHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc----c--cHHHHHHHHHHHHHhcCHHHH
Q 006562          503 VEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----N--FLEAWGHLTQFYQDLANSEKA  570 (640)
Q Consensus       503 ~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~--~~~~~~~la~~~~~~g~~~~A  570 (640)
                      +..-+.-+.+...      .-.++.++|.++...|+++.|+++|.+.+.+.-    .  .....+.+|..|....++++|
T Consensus       215 i~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kA  294 (639)
T KOG1130|consen  215 IHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKA  294 (639)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHH
Confidence            9988877766432      246788999999999999999999998776532    2  255678899999999999999


Q ss_pred             HHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc-----CCC-CHHHHHHHHHHHHHcCCcc
Q 006562          571 LECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPS-NIECLYLRASCYHAIGEYR  636 (640)
Q Consensus       571 ~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~-~~~~~~~la~~~~~~g~~~  636 (640)
                      +.++.+-+.+..      ....+++.+|..+...|..++|+.+.+..++.     +|. ...+..++...-..+|..+
T Consensus       295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED  372 (639)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence            999998876643      34568999999999999999999998887754     222 2356667777777777643

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.34  E-value=2.8e-11  Score=115.42  Aligned_cols=239  Identities=14%  Similarity=0.071  Sum_probs=142.8

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          389 IAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  467 (640)
                      ..++..|+|..++..++ ....++. .......+.+++..+|+++..+.....   ..+....+...++..+...++.+.
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~   84 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES   84 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence            44566777777776555 2222221 244556677777777776655544332   112223344455555544445555


Q ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          468 AIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       468 A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ++..++..+....  .++.+....|.++...|++++|++.+.+.     .+.+.......++..+++++.|.+.++.+.+
T Consensus        85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen   85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555554433221  23344555566677777777777776653     4556666667777777777777777777777


Q ss_pred             cCcccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          546 LDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      .+.+..-.....+++....|  .+.+|..+|+...+..+..+..+..++.++..+|++++|...+++++..+|++++++.
T Consensus       160 ~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La  239 (290)
T PF04733_consen  160 IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA  239 (290)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence            76665555555555555555  4777777777766666667777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCcc
Q 006562          624 LRASCYHAIGEYR  636 (640)
Q Consensus       624 ~la~~~~~~g~~~  636 (640)
                      +++.+...+|+..
T Consensus       240 Nliv~~~~~gk~~  252 (290)
T PF04733_consen  240 NLIVCSLHLGKPT  252 (290)
T ss_dssp             HHHHHHHHTT-TC
T ss_pred             HHHHHHHHhCCCh
Confidence            7777777777663

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.33  E-value=1.3e-08  Score=116.38  Aligned_cols=235  Identities=17%  Similarity=0.060  Sum_probs=177.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------c
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--------A  448 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~  448 (640)
                      ....+|..+...|++++|...+.+++.....      ...++..+|.++...|+++.|...+++++.....        .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            4556788899999999999999999875332      1345677899999999999999999998875221        1


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY  520 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~  520 (640)
                      ...+..+|.++...|++++|...+.+++.....     ....+..++.++...|+++.|...+.++....+..   ....
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            234557788999999999999999999876332     24456678899999999999999999997763322   1111


Q ss_pred             H----HHHHHHHHcCCHHHHHHHHHHHHccCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChH
Q 006562          521 T----YLGLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSK  586 (640)
Q Consensus       521 ~----~la~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~  586 (640)
                      .    .....+...|+.+.|...+.......+...    ..+..++.++...|++++|...+++++....      ....
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~  732 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR  732 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            1    122445567899999999877665332222    2246789999999999999999999987632      2245


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      ++..+|.++...|+.++|...+.+++++...
T Consensus       733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la~~  763 (903)
T PRK04841        733 NLILLNQLYWQQGRKSEAQRVLLEALKLANR  763 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence            7888999999999999999999999987644

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.33  E-value=4.9e-10  Score=108.34  Aligned_cols=153  Identities=22%  Similarity=0.154  Sum_probs=141.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (640)
Q Consensus       446 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  525 (640)
                      |....+++..+..++..|++++|...+...+...|+++..+...+.+++..|+..+|.+.+++++.+.|+.+..++++|.
T Consensus       303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~  382 (484)
T COG4783         303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ  382 (484)
T ss_pred             ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            67788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Q 006562          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI  605 (640)
Q Consensus       526 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  605 (640)
                      ++...|++.+|+..++..+..+|+++..|..++..|..+|+..++..                 ..+..+...|++++|+
T Consensus       383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~  445 (484)
T COG4783         383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAI  445 (484)
T ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999998776654                 4466777889999999


Q ss_pred             HHHHHhhccC
Q 006562          606 KDLSSGLGID  615 (640)
Q Consensus       606 ~~~~~al~~~  615 (640)
                      ..+..+.+..
T Consensus       446 ~~l~~A~~~~  455 (484)
T COG4783         446 IFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHhc
Confidence            9999988765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.32  E-value=7.1e-11  Score=98.20  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=63.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (640)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (640)
                      ++..+..+.+|..+...|++++|...|+-....+|.+...|++||.++..+|++++|+..|.+++.++|+++.++...|.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            44455555666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhcCCHHHHHHHHHHhhccC
Q 006562          594 LLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      +++..|+.+.|.+.|+.++...
T Consensus       112 c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        112 CYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHh
Confidence            6666666666666666665544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.32  E-value=1e-10  Score=97.32  Aligned_cols=109  Identities=15%  Similarity=0.096  Sum_probs=95.4

Q ss_pred             hhhccC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH
Q 006562          372 RISKSK-SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE  450 (640)
Q Consensus       372 ~~~~~~-~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  450 (640)
                      -+.... +...+..+..|..++..|++++|...|+-+...+|.++..|+++|.++..+|++.+|+..|.+++.++|+++.
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~  104 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQ  104 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            334455 6667888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEP  480 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p  480 (640)
                      .++..|.+++..|+.+.|...|+.++....
T Consensus       105 ~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        105 APWAAAECYLACDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999888763

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=1.2e-08  Score=92.05  Aligned_cols=282  Identities=18%  Similarity=0.200  Sum_probs=194.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHcccC-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562           43 LAKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (640)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~  121 (640)
                      +-++.+..+|..||.+.+--.+.+| +-..+..+|.||++..+|..|-..|++.=.+.|...+..+.-++.+.+.+.+.+
T Consensus        17 iy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD   96 (459)
T KOG4340|consen   17 VYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD   96 (459)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence            3456788899999999999999986 556689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccc
Q 006562          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (640)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (640)
                      |+.......+    ++.-+...+++......-..+                                             
T Consensus        97 ALrV~~~~~D----~~~L~~~~lqLqaAIkYse~D---------------------------------------------  127 (459)
T KOG4340|consen   97 ALRVAFLLLD----NPALHSRVLQLQAAIKYSEGD---------------------------------------------  127 (459)
T ss_pred             HHHHHHHhcC----CHHHHHHHHHHHHHHhccccc---------------------------------------------
Confidence            9988777622    111122222222111100000                                             


Q ss_pred             cCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcc
Q 006562          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (640)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (640)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (459)
T KOG4340|consen  128 --------------------------------------------------------------------------------  127 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHH
Q 006562          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNE  361 (640)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  361 (640)
                                                                              ...+....+               
T Consensus       128 --------------------------------------------------------l~g~rsLve---------------  136 (459)
T KOG4340|consen  128 --------------------------------------------------------LPGSRSLVE---------------  136 (459)
T ss_pred             --------------------------------------------------------CcchHHHHH---------------
Confidence                                                                    000000000               


Q ss_pred             HHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 006562          362 AKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEA  441 (640)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  441 (640)
                                  ......+++.....|...++.|+|+.|++-|+.+++...-++-.-++++.++++.|+++.|+++..+.
T Consensus       137 ------------Qlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEI  204 (459)
T KOG4340|consen  137 ------------QLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEI  204 (459)
T ss_pred             ------------hccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                        00111335556677888889999999999999999988888888899999999999999998887777


Q ss_pred             HHh----CCCc-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHH
Q 006562          442 IQS----NPSA-------------------------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN-----SADILH  487 (640)
Q Consensus       442 l~~----~p~~-------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~  487 (640)
                      ++.    .|..                         ..++...+-++++.++++.|.+.+..   +.|.     ++..+.
T Consensus       205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLH  281 (459)
T KOG4340|consen  205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLH  281 (459)
T ss_pred             HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhh
Confidence            643    3321                         13455667788888888888766543   3332     234455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (640)
                      +++..- ..+++.+...-+.-.+.++|--++.+-++-.+|.+..-|+-|...+
T Consensus       282 N~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL  333 (459)
T KOG4340|consen  282 NQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL  333 (459)
T ss_pred             HHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH
Confidence            554433 2355666777777777778866777777777777776666665544

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=9.7e-12  Score=108.00  Aligned_cols=97  Identities=26%  Similarity=0.347  Sum_probs=89.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCchhH-HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562           41 IELAKLCSLRNWSKAIRILDSLLAQSYEIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (640)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~-~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~  119 (640)
                      -++.++|..+.|..||++|.+||.++|+... |-|||.||+++++|+.+..+|.+|++++|+.+++++.+|.+.+....|
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence            4556889999999999999999999988855 679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCh
Q 006562          120 EEALSVWEKGYEHALHQS  137 (640)
Q Consensus       120 ~~A~~~~~~al~~~~~~~  137 (640)
                      ++|+.++.+|.++...++
T Consensus        95 ~eaI~~Lqra~sl~r~~~  112 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLLREQP  112 (284)
T ss_pred             cHHHHHHHHHHHHHhcCC
Confidence            999999999988765553

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.26  E-value=1.4e-11  Score=94.63  Aligned_cols=80  Identities=30%  Similarity=0.352  Sum_probs=72.6

Q ss_pred             cCCHHHHHHHHHHHHcccC---chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 006562           49 LRNWSKAIRILDSLLAQSY---EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (640)
Q Consensus        49 ~~~y~~Ai~~y~~ai~~~~---~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~  125 (640)
                      +|+|++|+.+|+++++..|   +...++.+|.||+++|+|++|+..+++ ++.+|.++..++.+|.+|.++|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6899999999999999996   345578899999999999999999999 999999999999999999999999999999


Q ss_pred             HHHH
Q 006562          126 WEKG  129 (640)
Q Consensus       126 ~~~a  129 (640)
                      |+++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            9875

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.25  E-value=3.2e-09  Score=98.92  Aligned_cols=84  Identities=18%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL---IGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAW  452 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~  452 (640)
                      .++..++..|..++..|+|++|+..|++++...|..+.+.   +.+|.+++..+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            3566677788888888888888888888888888765443   777888888888888888888888887765   3466


Q ss_pred             HHHHHHHHHc
Q 006562          453 KRRGQARAAL  462 (640)
Q Consensus       453 ~~la~~~~~~  462 (640)
                      +.+|.++...
T Consensus       110 Y~~g~~~~~~  119 (243)
T PRK10866        110 YMRGLTNMAL  119 (243)
T ss_pred             HHHHHhhhhc
Confidence            6667665433

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.24  E-value=1.2e-09  Score=98.34  Aligned_cols=266  Identities=15%  Similarity=0.047  Sum_probs=153.1

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      ++....+..|.+...+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+...........-.
T Consensus        32 ~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~  111 (459)
T KOG4340|consen   32 LLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALH  111 (459)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHH
Confidence            34444444554555555555555555555555555555555555555555555555555555555555544433221111


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      ..+...-+-+.+..+++..+....++.-.  .+..+.....|.+.++.|+++.|++-|+.+++...-++..-++++.+++
T Consensus       112 ~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy  189 (459)
T KOG4340|consen  112 SRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY  189 (459)
T ss_pred             HHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence            22233333444444444444433332110  1345667777888888888888888888888888777888888888888


Q ss_pred             HcCCHHHHHHHHHHHHcc----Cccc-------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562          529 SIGEYKKAEEAHLKAIQL----DRNF-------------------------LEAWGHLTQFYQDLANSEKALECLQQVLY  579 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~----~~~~-------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (640)
                      +.|+++.|+++..+.++.    .|+.                         .++++..+.++++.|+++.|.+.+...--
T Consensus       190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP  269 (459)
T KOG4340|consen  190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP  269 (459)
T ss_pred             hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence            888888888777666553    2321                         23445566677788888777765543211


Q ss_pred             hC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccc
Q 006562          580 ID--KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE  637 (640)
Q Consensus       580 ~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  637 (640)
                      ..  .-+|..+.+++..- ..+++.+...-++-.+.++|--++..-++-.+|.+..-|+-
T Consensus       270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l  328 (459)
T KOG4340|consen  270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL  328 (459)
T ss_pred             cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence            10  02355566665443 23556666666666777777666777666666666554443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.24  E-value=4.1e-11  Score=88.24  Aligned_cols=67  Identities=30%  Similarity=0.335  Sum_probs=63.3

Q ss_pred             chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhcc
Q 006562           68 EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG-RKEEALSVWEKGYEHAL  134 (640)
Q Consensus        68 ~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g-~~~~A~~~~~~al~~~~  134 (640)
                      ++..|.++|.+++++|+|++|+..++++|+++|+++.+++.+|.+|..+| ++++|+..|+++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            46678999999999999999999999999999999999999999999999 79999999999987766

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.23  E-value=2.8e-10  Score=112.86  Aligned_cols=113  Identities=22%  Similarity=0.284  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      +...|..++..|+|++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            56678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (640)
                      ++++|+..|++++.++|++..+...++.+....
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999988888876555

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.22  E-value=1.2e-07  Score=94.52  Aligned_cols=190  Identities=14%  Similarity=0.196  Sum_probs=124.4

Q ss_pred             ccCHHHHHHHHHHHHH-hCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcC
Q 006562          428 QRELEAAISDFTEAIQ-SNPS-----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFK  497 (640)
Q Consensus       428 ~g~~~~A~~~~~~al~-~~p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~  497 (640)
                      .|+..+-+..|.++++ .+|.     ....|..+|..|...|+.+.|...|+++.+..-..    ..+|...|..-+...
T Consensus       360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~  439 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE  439 (835)
T ss_pred             cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence            4556666666666654 3443     23567777788888888888888888877664322    456777777777777


Q ss_pred             CHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562          498 DFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (640)
Q Consensus       498 ~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~  559 (640)
                      +++.|+++.+.+...-..                  ...+|..++......|-++.....|++.+.+---.|....+.|.
T Consensus       440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAm  519 (835)
T KOG2047|consen  440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAM  519 (835)
T ss_pred             hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            778887777777644211                  12456666777777777777777777777776666777777777


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCC--CChHHHHH---HHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562          560 FYQDLANSEKALECLQQVLYIDK--RFSKAYHL---RGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      .+....-++++.+.|++.+.+.+  ...+.|..   ....-+.-...+.|...|+++++..|.
T Consensus       520 fLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp  582 (835)
T KOG2047|consen  520 FLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP  582 (835)
T ss_pred             HHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence            77777777788888877777653  33333332   222223334677788888888877663

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.22  E-value=3.5e-09  Score=96.43  Aligned_cols=174  Identities=21%  Similarity=0.232  Sum_probs=116.7

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWK  453 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  453 (640)
                      ++..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|++..|+..+++.++..|++   +.+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46788999999999999999999999999988875   6788999999999999999999999999999886   45788


Q ss_pred             HHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          454 RRGQARAALG-----------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (640)
Q Consensus       454 ~la~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (640)
                      .+|.+++...           ...+|+..|+..+...|++..+-.              |...+..+-.   .-..--+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHHHH---HHHHHHHH
Confidence            8888776543           234778888888888887643211              1111111000   01122344


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKA  570 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A  570 (640)
                      +|..|...|.+..|+..++.+++..|+.   ..++..++..|..+|..+.|
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            6667777777777777777777776665   34566667777777766643

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=1.7e-10  Score=105.40  Aligned_cols=98  Identities=26%  Similarity=0.274  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-Cchh----HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHH
Q 006562           36 AITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQ----DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG  110 (640)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~----~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g  110 (640)
                      +.+-+-.+..+|+.++|..|+.+|+++|... +++.    .|.|||.|.+.+|+|+.||.+|.+|++.+|++.+++++=+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            4555677889999999999999999999887 4443    3899999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhc
Q 006562          111 CAFSALGRKEEALSVWEKGYEHA  133 (640)
Q Consensus       111 ~~y~~~g~~~~A~~~~~~al~~~  133 (640)
                      .+++.+.++.+|....+..+.+.
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d  183 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQID  183 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhh
Confidence            99999999999999998885543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=99.17  E-value=6.3e-09  Score=94.72  Aligned_cols=175  Identities=21%  Similarity=0.167  Sum_probs=126.9

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH  487 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  487 (640)
                      .+..++..|..++..|+|.+|+..|++++...|..   +.+.+.+|.+++..|++..|+..+++.++..|+++   .+++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y   83 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY   83 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence            46788889999999999999999999999888865   56888899999999999999999999999988774   5777


Q ss_pred             HHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH
Q 006562          488 ERGIVNFKFK-----------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (640)
Q Consensus       488 ~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  556 (640)
                      .+|.+++...           ...+|+..|+..+...|++..+              .+|...+..+..   .-..--+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------~~A~~~l~~l~~---~la~~e~~  146 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------EEAKKRLAELRN---RLAEHELY  146 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------HHHHHHHHHHHH---HHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------HHHHHHHHHHHH---HHHHHHHH
Confidence            7887766543           2346777777777777766422              222222222111   11333467


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhcCCHHHHH
Q 006562          557 LTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQHKKAI  605 (640)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~  605 (640)
                      +|..|.+.|.+..|+..++.+++..|+.+   .++..++..|.++|..+.|.
T Consensus       147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            89999999999999999999999999875   57889999999999988554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=99.17  E-value=1.7e-08  Score=94.01  Aligned_cols=182  Identities=14%  Similarity=0.072  Sum_probs=134.8

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 006562          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA---WKRRGQARAALGESVEAIQDLSKALEFEPNS---ADIL  486 (640)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~  486 (640)
                      ..+..++..|..++..|++++|+..|++++...|..+.+   .+.+|.+++..+++++|+..+++.++.+|++   +.++
T Consensus        30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            357778889999999999999999999999999987654   4889999999999999999999999998877   4567


Q ss_pred             HHHHHHHHhcC---------------C---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q 006562          487 HERGIVNFKFK---------------D---FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (640)
Q Consensus       487 ~~la~~~~~~~---------------~---~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  548 (640)
                      +.+|.++...+               +   ..+|+..+++.++..|+...+              .+|...+..+-   .
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l~---~  172 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFLK---D  172 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHHH---H
Confidence            78887754433               1   246778888888888876432              12222111111   1


Q ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       549 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      .-..--+..|..|.+.|.|..|+.-++.+++..|+.   ++++..++..|..+|..++|.......
T Consensus       173 ~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        173 RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            112233467888888888888888888888887754   467888888888888888888776543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.16  E-value=3.8e-06  Score=84.12  Aligned_cols=241  Identities=15%  Similarity=0.119  Sum_probs=183.8

Q ss_pred             hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK-EDPM-----YPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~-~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      ..++..+|.++..|.....+  ..|+..+-+..|.+++. .+|.     ....|..+|..|...|+.+.|...|+++.+.
T Consensus       339 sVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V  416 (835)
T KOG2047|consen  339 SVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV  416 (835)
T ss_pred             HHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence            34567788888888876544  47888888888888876 3554     2467889999999999999999999999877


Q ss_pred             CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHhcCCHHHH
Q 006562          445 NPS----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------------------SADILHERGIVNFKFKDFNAA  502 (640)
Q Consensus       445 ~p~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~~~~~~A  502 (640)
                      .-.    -..+|...|..-....+++.|+.+.+++......                  +..+|..++.+....|-++..
T Consensus       417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest  496 (835)
T KOG2047|consen  417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST  496 (835)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence            533    2568888888888889999999999988764321                  134677778888888999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--cccHHHHHHHHHH---HHHhcCHHHHHHHHHHH
Q 006562          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RNFLEAWGHLTQF---YQDLANSEKALECLQQV  577 (640)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la~~---~~~~g~~~~A~~~~~~a  577 (640)
                      ...|++.+.+---.|....+.|..+....-++++.+.|++.+.+.  |.-.+.|...-.-   -+.....+.|..+|+++
T Consensus       497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa  576 (835)
T KOG2047|consen  497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA  576 (835)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            999999999888888999999999999999999999999988876  4445555533222   22234688999999999


Q ss_pred             HHhCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          578 LYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       578 l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      ++..|..  ...+...|.+-...|-...|+..|+++-.
T Consensus       577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            9988732  23566667777777777777777777654

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.15  E-value=4.3e-09  Score=90.36  Aligned_cols=198  Identities=18%  Similarity=0.135  Sum_probs=144.0

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (640)
                      ..+..++.+|..|-..|-+.-|.-.|.+++.+.|..+.++..+|..+...|+++.|.+.|+..++++|....+..+.|..
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~  142 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA  142 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      ++.-|++.-|.+.+.+-.+.+|++|.--..+-.. ...-+..+|...+.+-.+...+....|...+.   .+|+.. -..
T Consensus       143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS-~e~  217 (297)
T COG4785         143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKIS-EET  217 (297)
T ss_pred             eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhcc-HHH
Confidence            9999999999999999999999887532222111 12335666665554433332222222222221   222221 122


Q ss_pred             HHHHHHccCccc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562          539 AHLKAIQLDRNF-------LEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (640)
Q Consensus       539 ~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  581 (640)
                      .++++.....++       .++++.+|..+...|+.++|...|+-++..+
T Consensus       218 l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         218 LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            333333332222       5677888888888888888888888887654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.14  E-value=1.9e-08  Score=114.91  Aligned_cols=259  Identities=17%  Similarity=0.072  Sum_probs=195.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G  449 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  449 (640)
                      .......|..+...|++++|...+++++...+..     ..+...+|.++...|++++|...+.+++......      .
T Consensus       452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~  531 (903)
T PRK04841        452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL  531 (903)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence            3455667888899999999999999999854442     2356778899999999999999999998764321      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----c
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----N  516 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~  516 (640)
                      .++..+|.++...|++++|...+++++.....        ....+..+|.++...|++++|...+.+++.....     .
T Consensus       532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  611 (903)
T PRK04841        532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ  611 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence            35667899999999999999999999876321        1234567888999999999999999999876332     2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHH----HHHHHHHHhcCHHHHHHHHHHHHHhCCCChH---
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWG----HLTQFYQDLANSEKALECLQQVLYIDKRFSK---  586 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---  586 (640)
                      ...+..+|.++...|++++|...+.++....+..   .....    .....+...|+.+.|...+.......+....   
T Consensus       612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~  691 (903)
T PRK04841        612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ  691 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence            4556678999999999999999999987653321   11111    1224455678999999988776543322222   


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHHHhhccCC------CCHHHHHHHHHHHHHcCCccccc
Q 006562          587 -AYHLRGLLLHGLGQHKKAIKDLSSGLGIDP------SNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       587 -~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                       .+..++.++...|++++|...+++++....      ....++..+|.++...|+.++|.
T Consensus       692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~  751 (903)
T PRK04841        692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ  751 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence             256789999999999999999999987521      22357888999999999998874

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.09  E-value=3.5e-09  Score=87.94  Aligned_cols=105  Identities=24%  Similarity=0.322  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKR  454 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~  454 (640)
                      ++.++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|+++.|+.+|++++..+|++   +.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            3456667777777777777777777777766654   4566777777777777777777777777766654   456667


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006562          455 RGQARAALGESVEAIQDLSKALEFEPNSADI  485 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  485 (640)
                      +|.++...|++++|+..+.+++...|++..+
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            7777777777777777777777777766543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK11906 transcriptional regulator; Provisional

Probab=99.07  E-value=1.4e-08  Score=99.13  Aligned_cols=162  Identities=12%  Similarity=0.084  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 006562          383 FRLSRGIAQVNEG---KYASAISIFDQIL---KEDPMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSNPS  447 (640)
Q Consensus       383 ~~~~~a~~~~~~g---~~~~A~~~~~~~l---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~  447 (640)
                      -++..|...+..+   ....|+.+|.+++   ..+|..+.++..++.|++..         .+..+|....+++++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            4477777776655   4568888999999   88999999999999998765         2456678888888888888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-  526 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-  526 (640)
                      ++.++..+|.+....++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|....+-...-.+ 
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~  416 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVD  416 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888888765444333333 


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 006562          527 LSSIGEYKKAEEAHLKAI  544 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~  544 (640)
                      .+.....+.|+..|-+-.
T Consensus       417 ~~~~~~~~~~~~~~~~~~  434 (458)
T PRK11906        417 MYVPNPLKNNIKLYYKET  434 (458)
T ss_pred             HHcCCchhhhHHHHhhcc
Confidence            344456677777766543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=99.06  E-value=8.6e-09  Score=88.55  Aligned_cols=214  Identities=18%  Similarity=0.178  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF  494 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  494 (640)
                      +..++..|..|-..|-+.-|...|.+++.+.|+-++++..+|..+...|+|+.|.+.|...++++|....++.+.|..++
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y  144 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  144 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence            55677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH-HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 006562          495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH-LKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (640)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~-~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  573 (640)
                      .-|++.-|.+.+.+-...+|++|---.++=..- ..-++.+|...+ +++...+.+ ...|...+..   .|+..+ ...
T Consensus       145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---LgkiS~-e~l  218 (297)
T COG4785         145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-QKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGKISE-ETL  218 (297)
T ss_pred             ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH-hhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---HhhccH-HHH
Confidence            999999999999999999999984333322222 234566666544 444444322 2223222211   222211 123


Q ss_pred             HHHHHHhCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHcCC
Q 006562          574 LQQVLYIDKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGE  634 (640)
Q Consensus       574 ~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~  634 (640)
                      ++++.....+       -.++++.+|..+...|+.++|...|+-++..+--+.    -+.+.++.+.....+
T Consensus       219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~  290 (297)
T COG4785         219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDD  290 (297)
T ss_pred             HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccch
Confidence            3333332222       246799999999999999999999999987654332    344445555444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.06  E-value=7.8e-10  Score=80.15  Aligned_cols=65  Identities=26%  Similarity=0.281  Sum_probs=59.3

Q ss_pred             HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh
Q 006562           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS  137 (640)
Q Consensus        73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~  137 (640)
                      +.+|..+++.|+|++|+..++++++.+|+++++++.+|.++..+|++++|+..|+++++++|++|
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999988888764

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.05  E-value=2.5e-10  Score=110.35  Aligned_cols=112  Identities=23%  Similarity=0.286  Sum_probs=103.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHcccCch-hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562           41 IELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (640)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~  119 (640)
                      -++..+|..++|+.|+..|+|||+++||. ..+.+||.++++.++|..|+.|+.+||+.+|...++|+++|.+...++++
T Consensus         9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen    9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            45668899999999999999999999755 45789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHH
Q 006562          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTA  152 (640)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~  152 (640)
                      .+|...|++...+.|+.+.....+.+++.....
T Consensus        89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999998888887766554

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=7.7e-09  Score=94.97  Aligned_cols=120  Identities=26%  Similarity=0.316  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 006562          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLS  507 (640)
Q Consensus       431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~  507 (640)
                      .+.-+.-++..+..+|++.+.|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++...   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            3444444555555666666666666666666666666666666666666666666666665555433   2445556666


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (640)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  550 (640)
                      +++..+|.+..+.+.+|..++..|+|.+|...++..+...|.+
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            6666666666666666666666666666666666666555443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.05  E-value=1.1e-08  Score=90.78  Aligned_cols=121  Identities=22%  Similarity=0.271  Sum_probs=83.6

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      ..+..+..++.+|..+...|++++|+.+|++++...|+.   +.++..+|.++...|++++|+..+.+++...|.+...+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  109 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL  109 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            344556677778888888888888888888887765543   35677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      ..+|.++...|+...+...+..++.                    .+++|++++++++..+|++
T Consensus       110 ~~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        110 NNIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            7777777777776665554444432                    2456666666666666654

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.05  E-value=6.9e-09  Score=86.13  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHER  489 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l  489 (640)
                      ..++.+|..+...|++++|+..|.+++..+|++   +.+++.+|.++...|++++|+..|++++...|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            456667777777777777777777777766654   4566667777777777777777777777766654   4566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~  519 (640)
                      |.++...|++++|+..+++++...|++..+
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  112 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA  112 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence            777777777777777777777777766543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=99.04  E-value=1e-06  Score=83.50  Aligned_cols=224  Identities=29%  Similarity=0.351  Sum_probs=184.2

Q ss_pred             cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQ--SNPSAGEAWKRRGQARAALGESVEAI  469 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~  469 (640)
                      .+.+..+...+...+...+.  ........+..+...+++..+...+...+.  ..+.....+...+..+...+++..++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            46677777788877777766  367788888888888889988888888887  67777888888888888888899999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          470 QDLSKALEFEPNSADILHERGI-VNFKFKDFNAAVEDLSACVKLDK---ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ..+..++...+.........+. ++...|+++.|...+.+++...|   .........+..+...++++.|+..+.+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            9999988887776555555566 78889999999999999888666   3456666667777888899999999999998


Q ss_pred             cCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562          546 LDRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       546 ~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      ..+. ....+..++..+...++++.|+..+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            8888 68888889999999999999999999999888887777777787777777799999999999888886

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=99.03  E-value=1.9e-08  Score=103.91  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=81.2

Q ss_pred             cCcccHH--HHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHH
Q 006562          376 SKSISVD--FRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--------LEAAISDFTEAI  442 (640)
Q Consensus       376 ~~~~~~~--~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al  442 (640)
                      ..|.++.  -++..|..++..++   +..|+.+|+++++.+|+++.++..++.++.....        ...+.....+++
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            3444443  44667777766554   7788888888888888888888877777654321        223333334433


Q ss_pred             Hh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562          443 QS--NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (640)
Q Consensus       443 ~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (640)
                      ..  +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|.++
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            32  344445555555555555555555555555555555 344555555555555555555555555555555544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.1e-08  Score=93.91  Aligned_cols=121  Identities=17%  Similarity=0.141  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 006562          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG---ESVEAIQDLS  473 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~  473 (640)
                      .+.-+.-++.-+..+|++++.|..+|.+|+..|++..|...|.+++++.|++++.+..+|.+++...   ...++...++
T Consensus       138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~  217 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR  217 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            5566667778888899999999999999999999999999999999999999999999998877654   4578899999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (640)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (640)
                      +++..+|.+..+.+.+|..++..|+|.+|...++..+...|.+.
T Consensus       218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999999999999887653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.02  E-value=2.3e-08  Score=88.79  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  560 (640)
                      ..++.+|..+...|++++|+.++++++...|+.   ..++..+|.++...|++++|+..+.+++...|.+...+..+|.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            344555555555555555555555555544332   24555555555555555555555555555555555555555555


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      +...|+...+...+..++.                    .+++|++.+++++..+|++
T Consensus       116 ~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence            5555555544444333321                    1455566666666666554

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=99.01  E-value=2.5e-08  Score=85.58  Aligned_cols=124  Identities=19%  Similarity=0.167  Sum_probs=79.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHH
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQA  458 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~  458 (640)
                      +..+...+..++...+...++.++..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+...+|.+
T Consensus        15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~   94 (145)
T PF09976_consen   15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI   94 (145)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            344444455677777777777777777766   4556667777777777777777777777765543   3356667777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                      +...|++++|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus        95 ~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   95 LLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7777777777777654 2223333456666677777777777777766665

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=9e-09  Score=90.07  Aligned_cols=110  Identities=19%  Similarity=0.159  Sum_probs=94.8

Q ss_pred             hhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc--------Cch-----------hHHHhHHHHHHhhhcHHHHHH
Q 006562           30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS--------YEI-----------QDICNRAFCYSQLELHKHVIR   90 (640)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~--------~~~-----------~~~~~~A~~~~~~g~~~~Ai~   90 (640)
                      +..|-+...-+.++..+|+.|+|++|+..|..||..-        |..           ..+.|-++|++..|+|-+++.
T Consensus       172 deKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevle  251 (329)
T KOG0545|consen  172 DEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLE  251 (329)
T ss_pred             hHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence            4566666777888999999999999999999996321        222           225799999999999999999


Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 006562           91 DCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (640)
Q Consensus        91 ~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~  139 (640)
                      .|..+|..+|.+++||+++|.++...=+.++|...|.++|+++|+-...
T Consensus       252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            9999999999999999999999999999999999999998888765433

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.99  E-value=1.7e-08  Score=89.37  Aligned_cols=98  Identities=16%  Similarity=0.165  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHH
Q 006562          465 SVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEA  539 (640)
Q Consensus       465 ~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~  539 (640)
                      +..+...+...++..+.+  ...++.+|.++...|++++|+..|++++.+.|+.   +.++..+|.++...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444443333333332  3344555555555555555555555555544332   23455555555555555555555


Q ss_pred             HHHHHccCcccHHHHHHHHHHHH
Q 006562          540 HLKAIQLDRNFLEAWGHLTQFYQ  562 (640)
Q Consensus       540 ~~~a~~~~~~~~~~~~~la~~~~  562 (640)
                      +++++...|.....+..+|.++.
T Consensus        95 ~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         95 YFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHhCcCcHHHHHHHHHHHH
Confidence            55555555555555555555554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.98  E-value=3.2e-08  Score=95.36  Aligned_cols=195  Identities=15%  Similarity=0.120  Sum_probs=114.4

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNP--S----AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHER  489 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p--~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l  489 (640)
                      |.+|...|++++|...|.++....-  +    -...+...+.++... ++++|+.++++++.+.-..      ...+..+
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l  120 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL  120 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3444444455555555544433211  0    122334444444443 6666666666666552211      3456777


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-------HHHHH
Q 006562          490 GIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWG  555 (640)
Q Consensus       490 a~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~  555 (640)
                      |.+|... |++++|+++|++++......      ...+..+|.++...|+|++|+..|++.....-++       ...++
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l  200 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL  200 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence            8888887 88888888888888763211      3556678888888888888888888877643211       23455


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---H--HHHHHHHHHH--hcCCHHHHHHHHHHhhccCCC
Q 006562          556 HLTQFYQDLANSEKALECLQQVLYIDKRFS---K--AYHLRGLLLH--GLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~--~~~~la~~~~--~~g~~~~A~~~~~~al~~~p~  617 (640)
                      ..+.+++..||+..|...+++....+|...   +  ....+-.++.  ....+.+|+..|....+++|-
T Consensus       201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w  269 (282)
T PF14938_consen  201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNW  269 (282)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHH
Confidence            677788888888889888888888877432   2  2333333333  244678888888877666654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=3.2e-07  Score=81.95  Aligned_cols=162  Identities=15%  Similarity=0.061  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-  529 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-  529 (640)
                      ....-|.++..-|++++|+......     .+.++...-..++.++.+.+-|...++++...+.+  ..+..+|..+.. 
T Consensus       110 ~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~l  182 (299)
T KOG3081|consen  110 DLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKL  182 (299)
T ss_pred             HHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHH
Confidence            3444556777777777777776652     23455555566777777777777777777766543  333334444433 


Q ss_pred             ---cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH-
Q 006562          530 ---IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI-  605 (640)
Q Consensus       530 ---~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~-  605 (640)
                         .+++.+|.-+|++.-...|..+......+.+++.+|++++|...++.++..++++++++.++..+-...|...++. 
T Consensus       183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence               2456777777777777666677777777788888888888888888888777777887777777777777665544 


Q ss_pred             HHHHHhhccCCCCH
Q 006562          606 KDLSSGLGIDPSNI  619 (640)
Q Consensus       606 ~~~~~al~~~p~~~  619 (640)
                      +++.+....+|+.+
T Consensus       263 r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  263 RNLSQLKLSHPEHP  276 (299)
T ss_pred             HHHHHHHhcCCcch
Confidence            34455555666655

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.98  E-value=3.9e-08  Score=84.42  Aligned_cols=117  Identities=21%  Similarity=0.094  Sum_probs=72.4

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHH
Q 006562          495 KFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSE  568 (640)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~  568 (640)
                      ..++...+...++..+..+|+.   ..+.+.+|.+++..|++++|...|+.++...|+.   +.+.+.++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            4556666666666666666665   3455556666666666666666666666655433   345566666677777777


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      +|+..++.. ...+-.+.++..+|.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            776666542 2233345566666777777777777777766653

>PRK11906 transcriptional regulator; Provisional

Probab=98.98  E-value=5.7e-08  Score=94.94  Aligned_cols=132  Identities=14%  Similarity=0.083  Sum_probs=66.7

Q ss_pred             HHHHHHHHHcc---CHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCH
Q 006562          419 IGRGTARAFQR---ELEAAISDFTEAI---QSNPSAGEAWKRRGQARAAL---------GESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       419 ~~la~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p~~~  483 (640)
                      +..|......+   ..+.|+.+|.+++   ..+|..+.+|..++.+++..         ....+|....+++++++|.++
T Consensus       259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da  338 (458)
T PRK11906        259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG  338 (458)
T ss_pred             HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence            44444444333   2344555666666   56666666666666555433         122344444445555555555


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  550 (640)
                      .++..+|.++...++++.|...|++++.++|+.+.+++..|.+....|+.++|...++++++++|.-
T Consensus       339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            5555555555555555555555555555555555555555555555555555555555555555443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.97  E-value=4e-09  Score=77.54  Aligned_cols=65  Identities=38%  Similarity=0.516  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEP  480 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p  480 (640)
                      ..|..+|.+++..|++++|+.+|.++++.+|+++.+++.+|.++..+| ++.+|+..++++++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            344444444444444444444444444444444444444444444444 34444444444444443

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.97  E-value=2.4e-07  Score=100.05  Aligned_cols=234  Identities=12%  Similarity=0.062  Sum_probs=190.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCc----HHHHHHHHHHHHHcCCHHHHHH
Q 006562          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-NPSA----GEAWKRRGQARAALGESVEAIQ  470 (640)
Q Consensus       396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~----~~~~~~la~~~~~~~~~~~A~~  470 (640)
                      +-.+..+.|++.+..+|+....|...-..+...++.++|.+.+++++.. ++..    -.+|..+-++...-|.-+.-.+
T Consensus      1439 ~~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1439 RAPESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             cCCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            3445567788888889999999988888888999999999999999864 3322    2455555556666677777888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-
Q 006562          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-  549 (640)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-  549 (640)
                      .|++|.+... ...++..|..+|...+.+++|.++++..++...+....|..++..++..++-+.|...+.+|+..-|. 
T Consensus      1519 VFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~ 1597 (1710)
T KOG1070|consen 1519 VFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQ 1597 (1710)
T ss_pred             HHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchh
Confidence            8888887753 34678888999999999999999999999988888899999999999999999999999999998887 


Q ss_pred             -cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCCHHHHHHHH
Q 006562          550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSNIECLYLRA  626 (640)
Q Consensus       550 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la  626 (640)
                       +.......|.+.++.|+.+.+..+|+..+..+|...+.|.-+...-.+.|+.+.+...|++++.+  .|......+..-
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence             67788888999999999999999999999999999999999999999999999999999999865  344444444443


Q ss_pred             HHHH
Q 006562          627 SCYH  630 (640)
Q Consensus       627 ~~~~  630 (640)
                      .-|.
T Consensus      1678 LeyE 1681 (1710)
T KOG1070|consen 1678 LEYE 1681 (1710)
T ss_pred             HHHH
Confidence            3343

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.97  E-value=1e-08  Score=81.23  Aligned_cols=97  Identities=32%  Similarity=0.428  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (640)
                      ++.+|.++...|++++|+..+.+++...|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44555555555555666666655555555555555556666666666666666666665555555555566666666666


Q ss_pred             CHHHHHHHHHHhhccCC
Q 006562          600 QHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       600 ~~~~A~~~~~~al~~~p  616 (640)
                      ++++|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            66666666666555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.97  E-value=3.7e-08  Score=101.78  Aligned_cols=142  Identities=15%  Similarity=0.109  Sum_probs=80.5

Q ss_pred             HhCCCCHHHH--HHHHHHHHHccC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Q 006562          409 KEDPMYPEAL--IGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--------SVEAIQDLSKA  475 (640)
Q Consensus       409 ~~~~~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a  475 (640)
                      ...|.++.+|  +..|.-+...++   ...|+.+|+++++.+|+++.++..++.++.....        ...+.....++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3445555544  555666655443   7789999999999999998888888777654321        22333333333


Q ss_pred             HHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH
Q 006562          476 LEF--EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (640)
Q Consensus       476 l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  551 (640)
                      +..  +|.++.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++++.++|..+
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            332  334444455555555555555555555555555555 244555555555555555555555555555555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.97  E-value=1.1e-08  Score=80.89  Aligned_cols=97  Identities=28%  Similarity=0.414  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      ++.+|..++..|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            44455555555666666666666655555555555555666655555666666665555555555555555555555555


Q ss_pred             CHHHHHHHHHHHHHhCC
Q 006562          464 ESVEAIQDLSKALEFEP  480 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p  480 (640)
                      +++.|...+.+++...|
T Consensus        83 ~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          83 KYEEALEAYEKALELDP   99 (100)
T ss_pred             hHHHHHHHHHHHHccCC
Confidence            55555555555555444

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.95  E-value=1.3e-06  Score=82.87  Aligned_cols=204  Identities=27%  Similarity=0.341  Sum_probs=182.7

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILK--EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      ........+..+...+++..+...+.....  ..+.....+...+..+...+++..++..+..++...+.........+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (291)
T COG0457          58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL  137 (291)
T ss_pred             chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence            467778889999999999999999999997  688888999999999999999999999999999988877666666666


Q ss_pred             -HHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCC
Q 006562          458 -ARAALGESVEAIQDLSKALEFEP---NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLALSSIGE  532 (640)
Q Consensus       458 -~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~  532 (640)
                       ++...|+++.|...+.+++...|   .........+..+...++++.++..+.+++...+. ....+..++..+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             89999999999999999988776   34556667777788999999999999999999999 69999999999999999


Q ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      +..|...+..++...|.....+..++..+...+.++.+...+.+++...|.
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999987778888888888778899999999999999887

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.95  E-value=2.6e-08  Score=88.05  Aligned_cols=100  Identities=17%  Similarity=0.194  Sum_probs=64.3

Q ss_pred             CChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHH
Q 006562          395 GKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAI  469 (640)
Q Consensus       395 g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~  469 (640)
                      ..|..+...+...++.++..  ...++.+|.++...|++++|+..|++++...|+.   +.++..+|.++...|++++|+
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~   92 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL   92 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence            33455555554444444433  4556677777777777777777777777665542   346677777777777777777


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562          470 QDLSKALEFEPNSADILHERGIVNF  494 (640)
Q Consensus       470 ~~~~~al~~~p~~~~~~~~la~~~~  494 (640)
                      ..+++++.+.|.....+..+|.++.
T Consensus        93 ~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         93 EYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            7777777777776666666666666

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.93  E-value=3.3e-09  Score=81.31  Aligned_cols=81  Identities=27%  Similarity=0.369  Sum_probs=50.8

Q ss_pred             cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562          394 EGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  471 (640)
                      +|+|+.|+.+++++++.+|.  +...++.+|.+++..|++++|+..+++ .+.+|.+....+.+|.++..+|++++|+..
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46666666666666666663  344555566666666666666666666 555566666666666666666666666666


Q ss_pred             HHHH
Q 006562          472 LSKA  475 (640)
Q Consensus       472 ~~~a  475 (640)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            6553

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.92  E-value=1.5e-09  Score=99.52  Aligned_cols=230  Identities=17%  Similarity=0.097  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      +-..|..|+.+|.|++|+.+|.+++..+|.++..+.+.|.+|+....+..|...+..++.++.....+|...+..-..+|
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            44679999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH---------HHHHHHHHHHcCCHH
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA---------YTYLGLALSSIGEYK  534 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~la~~~~~~g~~~  534 (640)
                      ...+|.+.++.++++.|++.+....++.+-.    ..++    +-+.+..|....+         .-.-|..+...|.+.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S----l~E~----~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~  251 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIELKKSLARINS----LRER----KIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS  251 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHHHHHHHHHhcc----hHhh----hHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence            9999999999999999998776655554432    1111    1111112221111         112366667778888


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      .++.++.+-+..+..+.....+ +..+.+.-+++.++.-..+++..+|.........+.+-.-.|...++...++.++.+
T Consensus       252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~  330 (536)
T KOG4648|consen  252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV  330 (536)
T ss_pred             cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence            8888877766555444333333 666777778889988888888887766655556666666677788888899999988


Q ss_pred             CCCCHHHH
Q 006562          615 DPSNIECL  622 (640)
Q Consensus       615 ~p~~~~~~  622 (640)
                      .|.+....
T Consensus       331 ~P~~~~~~  338 (536)
T KOG4648|consen  331 APAVETPK  338 (536)
T ss_pred             ccccccch
Confidence            88765433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.92  E-value=3.8e-08  Score=82.41  Aligned_cols=113  Identities=13%  Similarity=0.111  Sum_probs=99.9

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      +..+....+...+..+..|..++..|++++|..+|+-+...+|.++..++.+|.|+..+++|++|+..|..+...+++++
T Consensus        26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp  105 (165)
T PRK15331         26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY  105 (165)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            34445566667788899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  483 (640)
                      ...+..|.|+..+|+...|...|..++. .|.+.
T Consensus       106 ~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~  138 (165)
T PRK15331        106 RPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDE  138 (165)
T ss_pred             CccchHHHHHHHhCCHHHHHHHHHHHHh-CcchH
Confidence            9999999999999999999999999988 45443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.90  E-value=1.4e-07  Score=87.53  Aligned_cols=234  Identities=15%  Similarity=0.189  Sum_probs=178.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEA  451 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~  451 (640)
                      +...+..|.-++...++.+|+..+.+.+..-.+.   ...+-.+..+...+|.|++++.+.-..+....+      .-++
T Consensus         6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea   85 (518)
T KOG1941|consen    6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA   85 (518)
T ss_pred             hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677888899999999999999888754332   234445667788888888877765444433221      1357


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHH
Q 006562          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSA-----DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAY  520 (640)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~  520 (640)
                      +..+++.+....++.+++.+-+..+.+....+     .....++..+..++.++++++.|+.+++...++      -.++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            88889999999999999998888887654332     466778999999999999999999998875433      2567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCccc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC
Q 006562          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNF----------LEAWGHLTQFYQDLANSEKALECLQQVLYID------KRF  584 (640)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------~~~  584 (640)
                      ..+|..+....++++|.-+..++.++-...          ..+.+.++..+..+|..-.|.++.+++.++.      +-.
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            889999999999999999988888763221          3466788888999999999999999887653      233


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      ......+|.+|...|+.+.|..-|+.+...
T Consensus       246 arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  246 ARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            456778899999999999999999988754

>PRK15331 chaperone protein SicA; Provisional

Probab=98.89  E-value=4.1e-08  Score=82.18  Aligned_cols=96  Identities=13%  Similarity=-0.069  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (640)
                      +..+..|.-++..|++++|...|+-....+|.++..|..||.++..+++|++|+..|..+..+++++|...+..|.++..
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHhhc
Q 006562          598 LGQHKKAIKDLSSGLG  613 (640)
Q Consensus       598 ~g~~~~A~~~~~~al~  613 (640)
                      +|+.+.|+..|+.++.
T Consensus       118 l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        118 MRKAAKARQCFELVNE  133 (165)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            5555555555555544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.88  E-value=6.9e-09  Score=75.14  Aligned_cols=63  Identities=30%  Similarity=0.433  Sum_probs=35.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      .+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            345555555555555555555555555555555555555555555555555555555555554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.88  E-value=9.5e-08  Score=89.57  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHH
Q 006562          381 VDFRLSRGIAQ-VNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWK  453 (640)
Q Consensus       381 ~~~~~~~a~~~-~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~  453 (640)
                      ....+..|..+ +..|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|.++++.+|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45566777765 56799999999999999999987   5799999999999999999999999999888874   67888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADI  485 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~  485 (640)
                      .+|.++...|++++|...|+++++..|+...+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            89999999999999999999999999987654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.86  E-value=9.8e-07  Score=79.46  Aligned_cols=190  Identities=15%  Similarity=0.155  Sum_probs=128.3

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EA  451 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~  451 (640)
                      ...+..++..|...+..|+|.+|+..|+.+....|..   ..+.+.++.++++.++++.|+..+++-+...|.++   .+
T Consensus        31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~  110 (254)
T COG4105          31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA  110 (254)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence            3457889999999999999999999999999988775   57889999999999999999999999999998875   46


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          452 WKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (640)
Q Consensus       452 ~~~la~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  523 (640)
                      ++..|.+++..        .-...|+..|+..+...|++.-+--....           +..+...+      ...-..+
T Consensus       111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~L------A~~Em~I  173 (254)
T COG4105         111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDAL------AGHEMAI  173 (254)
T ss_pred             HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHHH------HHHHHHH
Confidence            77777776543        12356778888888888876322111100           00001000      1122345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          524 GLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      |..|.+.|.+-.|+..++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|++
T Consensus       174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            666666677777777777666665544   4555666666677776666655444333333443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.86  E-value=4.5e-08  Score=76.84  Aligned_cols=103  Identities=20%  Similarity=0.267  Sum_probs=88.5

Q ss_pred             HHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHH
Q 006562           46 LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL----LQAYILKGCAFSALGRKE  120 (640)
Q Consensus        46 ~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~----~~a~~~~g~~y~~~g~~~  120 (640)
                      +-..|+.+.|++.|.++|.+. ..+.+|.|||.++.-+|+-++|+.++++|+++.-.-    ..+|..+|.+|..+|+-+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            346799999999999999999 677789999999999999999999999999987443    348999999999999999


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHhHHHHH
Q 006562          121 EALSVWEKGYEHALHQSADLKQFLELEELL  150 (640)
Q Consensus       121 ~A~~~~~~al~~~~~~~~~~~~~~~l~~~~  150 (640)
                      .|...|+.|-.+.  .+.+...++.+.|..
T Consensus       133 ~AR~DFe~AA~LG--S~FAr~QLV~lNPYA  160 (175)
T KOG4555|consen  133 AARADFEAAAQLG--SKFAREQLVELNPYA  160 (175)
T ss_pred             HHHHhHHHHHHhC--CHHHHHHHHhcChHH
Confidence            9999999997765  455666667766653

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=9.9e-08  Score=90.90  Aligned_cols=129  Identities=22%  Similarity=0.256  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPM----Y-----------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      .-..|..+++.|+|..|...|++++..-..    +           ..++.+++.|+..+++|.+|+..+.++|..+|+|
T Consensus       211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N  290 (397)
T KOG0543|consen  211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN  290 (397)
T ss_pred             HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence            345688889999999999999888764321    1           2345566666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA-VEDLSACVKL  512 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A-~~~~~~al~~  512 (640)
                      ..++++.|.++..+|+|+.|+..|++++++.|.+..+...+..+..+..++.+. .+.|..++..
T Consensus       291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            666666666666666666666666666666666666655555555544443332 4444444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.84  E-value=1.6e-07  Score=90.51  Aligned_cols=200  Identities=17%  Similarity=0.162  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------c
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP--M----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------A  448 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~--~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~  448 (640)
                      .+.+...|..|...|++++|...|.++....-  .    ....+...+.++... ++++|+.++++++...-.      -
T Consensus        35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a  113 (282)
T PF14938_consen   35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            45667778889999999999999999876432  1    135566667776555 999999999999876422      1


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----
Q 006562          449 GEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----  516 (640)
Q Consensus       449 ~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----  516 (640)
                      ..++..+|.+|... |++++|+++|++++.+....      ...+..+|.++...|+|++|+..|++.....-++     
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            45788899999998 99999999999999874322      3467889999999999999999999998764221     


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-----HHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhC
Q 006562          517 --KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-----LEAWGHLTQFYQD--LANSEKALECLQQVLYID  581 (640)
Q Consensus       517 --~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~  581 (640)
                        ...++..+.++...|++..|...+++....+|..     ......+...+..  ...++.++.-|.+...++
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld  267 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD  267 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence              2455677889999999999999999999988754     2233333333332  345677777776654444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.81  E-value=2.4e-07  Score=86.90  Aligned_cols=105  Identities=18%  Similarity=0.147  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 006562          415 PEALIGRGTAR-AFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILH  487 (640)
Q Consensus       415 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~  487 (640)
                      ....+..|..+ ...|+|++|+..|+..++.+|++   +.+++.+|.+|+..|++++|+..|++++..+|++   +++++
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            45566666655 45677888888888888877776   4677778888888888888888888877776664   56777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  519 (640)
                      .+|.++...|++++|...|+++++..|+...+
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            77777777777777777777777777776543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=98.81  E-value=4.3e-07  Score=84.43  Aligned_cols=219  Identities=19%  Similarity=0.169  Sum_probs=116.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------H
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------D  484 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~  484 (640)
                      +++.+++..+....++.+++.+-.-.+.+....     ..+...+|..+..++.++++++.|+.+++...++.      .
T Consensus        84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq  163 (518)
T KOG1941|consen   84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ  163 (518)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence            455666666666666666666665555443222     23444566666666666666666666666543321      2


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC----c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------c
Q 006562          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKE----N------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------R  548 (640)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~----~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~  548 (640)
                      ++..+|.++....++++|.-+..++.++...    +      ..+++.++..+..+|..-.|.++.+++.++.      +
T Consensus       164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra  243 (518)
T KOG1941|consen  164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA  243 (518)
T ss_pred             hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence            4556666666666666666666666554321    1      1334555666666666666666666665542      1


Q ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHH-----HHHHHHHhhccCCC
Q 006562          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKK-----AIKDLSSGLGIDPS  617 (640)
Q Consensus       549 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~p~  617 (640)
                      -.......+|.+|...|+.+.|..-|+.+.....      ....++...|.++....-..+     |++.-.+++++...
T Consensus       244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~  323 (518)
T KOG1941|consen  244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS  323 (518)
T ss_pred             HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence            2234445566666666666666666666654322      112334444444433322222     55555555544322


Q ss_pred             C------HHHHHHHHHHHHHcCC
Q 006562          618 N------IECLYLRASCYHAIGE  634 (640)
Q Consensus       618 ~------~~~~~~la~~~~~~g~  634 (640)
                      -      ...+..++.+|..+|.
T Consensus       324 IG~K~~vlK~hcrla~iYrs~gl  346 (518)
T KOG1941|consen  324 IGAKLSVLKLHCRLASIYRSKGL  346 (518)
T ss_pred             hhhhHHHHHHHHHHHHHHHhccc
Confidence            1      1344555666655543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.80  E-value=2.4e-06  Score=92.64  Aligned_cols=212  Identities=12%  Similarity=-0.007  Sum_probs=185.3

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMY----PEALIGRGTARAFQRELEAAISDFTEAIQ  443 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (640)
                      .+.+....+|++.-.|+..-..+++.++.+.|.+.+++++.. ++..    ..+|..+-.....-|.-+.-.+.|++|.+
T Consensus      1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            467788899999999999888999999999999999999974 3432    23444444444455777778888999887


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHH
Q 006562          444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYT  521 (640)
Q Consensus       444 ~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~  521 (640)
                      .. +...+|..|..+|...+++++|.++++..++...+...+|..++..++++++-+.|...+.+|++--|.  +.....
T Consensus      1526 yc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1526 YC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred             hc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence            65 345678889999999999999999999999999888999999999999999999999999999999998  677888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  581 (640)
                      ..|.+-++.|+.+.+...|+..+..+|.-.+.|.-+...-.+.|+.+.+..+|++++.+.
T Consensus      1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             HHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999998764

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.77  E-value=2.7e-07  Score=91.03  Aligned_cols=119  Identities=18%  Similarity=0.216  Sum_probs=81.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA  501 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  501 (640)
                      -.++...++++.|+..+++..+.+|+   +...++.++...++..+|+..+.+++...|.+...+...+..+...++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence            34444456677777777776666653   444566677667777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (640)
Q Consensus       502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (640)
                      |+...++++...|.+...|+.|+.+|...|+++.|+..++.+
T Consensus       253 AL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  253 ALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            777777777777777777777777777777777777666544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.77  E-value=4.7e-06  Score=75.19  Aligned_cols=189  Identities=16%  Similarity=0.055  Sum_probs=139.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD---ILH  487 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~  487 (640)
                      .+..++.-|...++.|++++|...|+.+....|..   ..+...++.++++.+++++|+...++-+.+.|.++.   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            46788899999999999999999999999888865   457888999999999999999999999999887754   566


Q ss_pred             HHHHHHHhcC--------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562          488 ERGIVNFKFK--------DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (640)
Q Consensus       488 ~la~~~~~~~--------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~  559 (640)
                      ..|.+++..=        -...|+..++..+...|++.-+-.....           +..+...      ...--..+|+
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em~Iar  175 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEMAIAR  175 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHHHHHH
Confidence            6777655421        2345667777777777776432111111           1111111      1223356899


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562          560 FYQDLANSEKALECLQQVLYIDKRF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (640)
                      .|.+.|.+..|+..++.+++..|+.   .+++..+..+|..+|-.++|...-.-.-...|+++
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~  238 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ  238 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence            9999999999999999999987754   45788889999999999999887665555556654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.75  E-value=2.9e-07  Score=90.85  Aligned_cols=121  Identities=23%  Similarity=0.211  Sum_probs=110.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (640)
                      .+-.++...++++.|+..+++..+.+|+   +...++.++...++..+|++.+.+++...|.+...+...+..+...+++
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~  250 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY  250 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence            3455566678999999999999988874   6677899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (640)
                      +.|+...++++...|.....|..|+.+|...|+++.|+..++.+
T Consensus       251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999888755

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.1e-05  Score=72.50  Aligned_cols=239  Identities=16%  Similarity=0.061  Sum_probs=150.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  467 (640)
                      .+.++..|+|..++..-.+..... ........+.+.|...|++...+......-   .....+...++.....-++.+.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence            345666777777777666554433 556667777777777777665544433321   1112334444555444455555


Q ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          468 AIQDLSKALEFE--PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       468 A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      -+..+.+.+...  ..+......-|.++...|++++|++.....     .+.++...-..++.++.+++-|...++++.+
T Consensus        91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen   91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444444433322  222234445567777778888887777663     3345555556677777778888888887777


Q ss_pred             cCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHH
Q 006562          546 LDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC  621 (640)
Q Consensus       546 ~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  621 (640)
                      ++.+.  ....||..+..    .+...+|.-+|+..-+..|..+.....++.++..+|++++|...++.++..+++++++
T Consensus       166 ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpet  243 (299)
T KOG3081|consen  166 IDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPET  243 (299)
T ss_pred             cchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHH
Confidence            76442  33334444333    2457777788887777677777777888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHcCCccc
Q 006562          622 LYLRASCYHAIGEYRE  637 (640)
Q Consensus       622 ~~~la~~~~~~g~~~~  637 (640)
                      +.++..+-..+|...+
T Consensus       244 L~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  244 LANLIVLALHLGKDAE  259 (299)
T ss_pred             HHHHHHHHHHhCCChH
Confidence            8887777777776544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.74  E-value=1.3e-05  Score=83.57  Aligned_cols=226  Identities=13%  Similarity=0.008  Sum_probs=155.4

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (640)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  470 (640)
                      ....++|.+|+....+.++..|+.+.+....|..+.++|..++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence            34567888888888888888888888888888888888888888877777766677777777778888888888888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCC---------HHHHHHHH
Q 006562          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGE---------YKKAEEAH  540 (640)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~---------~~~A~~~~  540 (640)
                      +|++++..+|. .+....+-.+|.+.+.|.+-.+.--+..+..|+++..+.....+... ...         ..-|...+
T Consensus        99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~  177 (932)
T KOG2053|consen   99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMV  177 (932)
T ss_pred             HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHH
Confidence            88888888887 77777777788887777766666666666777776444433333332 222         22355556


Q ss_pred             HHHHccC-ccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          541 LKAIQLD-RNF--LEAWGHLTQFYQDLANSEKALECLQQVL-YIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       541 ~~a~~~~-~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      ++.++.. +-.  .++ ...-.++..+|++++|...+..-+ +..+ .+...-......+...+++.+-.+...+++...
T Consensus       178 ~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  178 QKLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            6666554 211  222 223345566788888888884332 2333 333333455666777888888888888888877


Q ss_pred             CCC
Q 006562          616 PSN  618 (640)
Q Consensus       616 p~~  618 (640)
                      +++
T Consensus       257 ~Dd  259 (932)
T KOG2053|consen  257 NDD  259 (932)
T ss_pred             Ccc
Confidence            776

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.72  E-value=6.2e-08  Score=72.06  Aligned_cols=64  Identities=27%  Similarity=0.325  Sum_probs=50.3

Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 006562           76 AFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (640)
Q Consensus        76 A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~  139 (640)
                      +.+|++.++|++|+..+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|+.+..
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            4567778888888888888888888888888888888888888888888888887777766544

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.72  E-value=3.3e-05  Score=73.02  Aligned_cols=248  Identities=19%  Similarity=0.099  Sum_probs=179.1

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (640)
                      .+-+++.-+...+-.|+++.|.+-|+..+. +|.. .-.+..+-.-....|..+.|..+.+++....|.-+.++...-..
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            356777788888899999999999998775 4432 22233333344567999999999999999999998888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC---CCCH---HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          459 RAALGESVEAIQDLSKALEFE---PNSA---DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~---p~~~---~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  531 (640)
                      ....|+|+.|+++.+......   ++..   .+...-+.... -.-+...|...-.+++++.|+....-..-+..++..|
T Consensus       198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~  277 (531)
T COG3898         198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG  277 (531)
T ss_pred             HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence            889999999999988765432   2211   11111222222 2346788888899999999998888888899999999


Q ss_pred             CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH---HHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV---LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       532 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      +..++-.+++.+.+..|. |.+    +.+|....--+.++.-++++   ..+.|++.+.....+..-+.-|++..|...-
T Consensus       278 ~~rKg~~ilE~aWK~ePH-P~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~A  352 (531)
T COG3898         278 NLRKGSKILETAWKAEPH-PDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKA  352 (531)
T ss_pred             chhhhhhHHHHHHhcCCC-hHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHH
Confidence            999999999999998875 333    33333333333444444444   4567888888888899989999999999888


Q ss_pred             HHhhccCCCCHHHHHHHHHHHHHc-CC
Q 006562          609 SSGLGIDPSNIECLYLRASCYHAI-GE  634 (640)
Q Consensus       609 ~~al~~~p~~~~~~~~la~~~~~~-g~  634 (640)
                      +.+....|. ..++..|+.+-... |+
T Consensus       353 eaa~r~~pr-es~~lLlAdIeeAetGD  378 (531)
T COG3898         353 EAAAREAPR-ESAYLLLADIEEAETGD  378 (531)
T ss_pred             HHHhhhCch-hhHHHHHHHHHhhccCc
Confidence            888888886 45566666665543 44

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.71  E-value=8.1e-09  Score=95.26  Aligned_cols=104  Identities=22%  Similarity=0.307  Sum_probs=95.4

Q ss_pred             hhHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHH
Q 006562           30 DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL  108 (640)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~  108 (640)
                      +.-+.-+...++...+++..|++++||+.|+++|.++ +....|.+||.+++++++...||.+|..|++++|+..+.|-.
T Consensus       108 ee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykf  187 (377)
T KOG1308|consen  108 EEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKF  187 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccch
Confidence            3445555677788889999999999999999999999 666779999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhc
Q 006562          109 KGCAFSALGRKEEALSVWEKGYEHA  133 (640)
Q Consensus       109 ~g~~y~~~g~~~~A~~~~~~al~~~  133 (640)
                      +|.+...+|+|++|.+.|..+.+++
T Consensus       188 rg~A~rllg~~e~aa~dl~~a~kld  212 (377)
T KOG1308|consen  188 RGYAERLLGNWEEAAHDLALACKLD  212 (377)
T ss_pred             hhHHHHHhhchHHHHHHHHHHHhcc
Confidence            9999999999999999999997765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.71  E-value=5.6e-07  Score=72.77  Aligned_cols=94  Identities=23%  Similarity=0.158  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPN---SADILHERG  490 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la  490 (640)
                      +++.+|.++-..|+.++|+.+|++++......   ..++..+|..+..+|++++|+..+++++...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            34444444444444444444444444432221   234444444444444444444444444444444   333344444


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 006562          491 IVNFKFKDFNAAVEDLSACV  510 (640)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al  510 (640)
                      .++...|++++|+..+-.++
T Consensus        83 l~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            44444444444444444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.69  E-value=6e-07  Score=72.63  Aligned_cols=94  Identities=24%  Similarity=0.223  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---cHHHHHHHH
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLG  524 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la  524 (640)
                      +++.+|.++...|+.++|+..|++++......   ..++..+|..+...|++++|+..+++++...|+   +..+...++
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            34445555555555555555555555543322   234444555555555555555555555554444   344444445


Q ss_pred             HHHHHcCCHHHHHHHHHHHH
Q 006562          525 LALSSIGEYKKAEEAHLKAI  544 (640)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~a~  544 (640)
                      .++...|++++|+..+-.++
T Consensus        83 l~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   83 LALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            55555555555555444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.68  E-value=7.3e-08  Score=70.50  Aligned_cols=66  Identities=21%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      +..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777777666665554

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.65  E-value=1.2e-07  Score=69.30  Aligned_cols=66  Identities=26%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562          562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       562 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (640)
                      +..|++++|+..|++++..+|++..++..+|.++...|++++|...+++++..+|+++.++..++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            456777777777777777777777777777777777777777777777777777777666666554

...

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.64  E-value=1.5e-06  Score=71.38  Aligned_cols=104  Identities=22%  Similarity=0.257  Sum_probs=82.3

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAW  452 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~  452 (640)
                      ..+..++..|...+..|+|.+|++.|+.+....|..   ..+.+.++.+|+..|++++|+..+++-++++|.++   .++
T Consensus         8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen    8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            456778889999999999999999999999887764   57888999999999999999999999999998875   577


Q ss_pred             HHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q 006562          453 KRRGQARAALGE---------------SVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       453 ~~la~~~~~~~~---------------~~~A~~~~~~al~~~p~~  482 (640)
                      +..|.+++....               ...|...|++.+...|++
T Consensus        88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            888888777655               444555555555555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.62  E-value=1.4e-06  Score=79.24  Aligned_cols=104  Identities=22%  Similarity=0.289  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ  457 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  457 (640)
                      .|..|.-++..|+|..|...|..-++..|+.   +.++++||.+++.+|+|+.|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6777888888888888888888888888874   6788888888888888888888888888877764   577888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNSADILH  487 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  487 (640)
                      +...+|+.++|...|+++++..|....+..
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            888888888888888888888887765543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.61  E-value=1.1e-06  Score=80.07  Aligned_cols=101  Identities=23%  Similarity=0.243  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHH
Q 006562          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQ  559 (640)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~  559 (640)
                      .+..|.-++..|+|..|...|..-++..|+.   +.++++||.+++.+|+++.|...|..+.+..|++   +++++.+|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            4444555555555555555555555555543   3455555555555555555555555555544433   444555555


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562          560 FYQDLANSEKALECLQQVLYIDKRFSK  586 (640)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~~~~  586 (640)
                      +...+|+.++|...|+++++..|..+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            555555555555555555555554443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=2.9e-05  Score=80.02  Aligned_cols=244  Identities=16%  Similarity=0.114  Sum_probs=156.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  464 (640)
                      ...|......|..++|..+|++.-+.        -.+-..|...|.+++|.+..+.--.+.  -...|+..|..+...++
T Consensus       804 akvAvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D  873 (1416)
T KOG3617|consen  804 AKVAVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD  873 (1416)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence            34566777888899999999887653        234566667777777776655421111  23456677777777777


Q ss_pred             HHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------
Q 006562          465 SVEAIQDLSKA----------LEFEP----------NSADILHERGIVNFKFKDFNAAVEDLSACVKL------------  512 (640)
Q Consensus       465 ~~~A~~~~~~a----------l~~~p----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------------  512 (640)
                      .+.|+++|+++          +.-+|          .++..|...|..+...|+.+.|+.+|..+-..            
T Consensus       874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk  953 (1416)
T KOG3617|consen  874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGK  953 (1416)
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccC
Confidence            77777777754          22233          23446667777777888888888877766432            


Q ss_pred             ---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------Cccc--------------HHHHHHHHHHHHH
Q 006562          513 ---------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNF--------------LEAWGHLTQFYQD  563 (640)
Q Consensus       513 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~--------------~~~~~~la~~~~~  563 (640)
                               ...+..+.+.+|+.|...|++.+|+..|.++-..      ..++              +.-....|..|..
T Consensus       954 ~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen  954 TDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred             chHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence                     2345567788899999999999998888776433      1111              1111223334444


Q ss_pred             hc-CHHHHHHHHHHH------H-----------------HhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHH------hh
Q 006562          564 LA-NSEKALECLQQV------L-----------------YIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSS------GL  612 (640)
Q Consensus       564 ~g-~~~~A~~~~~~a------l-----------------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~------al  612 (640)
                      .| ....|..+|.++      +                 .++| .+|.....-+..+....+|++|...+-.      |+
T Consensus      1034 ~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~Al 1113 (1416)
T KOG3617|consen 1034 LGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGAL 1113 (1416)
T ss_pred             cchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            44 555555555433      1                 1233 4677888888899999999999876543      33


Q ss_pred             cc----------------CCC---------CHHHHHHHHHHHHHcCCcccc
Q 006562          613 GI----------------DPS---------NIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       613 ~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ++                .|.         ...++..+|.++.++|.|..|
T Consensus      1114 qlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1114 QLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred             HHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence            32                121         126788899999999998766

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.59  E-value=4.8e-07  Score=76.98  Aligned_cols=109  Identities=23%  Similarity=0.265  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENK-----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (640)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  560 (640)
                      +..-|.-++..|+|++|..-|..++...|..+     ..+.+.|.++++++.++.|+..+.++++++|.+..++...|.+
T Consensus        98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea  177 (271)
T KOG4234|consen   98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA  177 (271)
T ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence            44557888888888888888888888888653     4566778888888888888888888888888888888888888


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 006562          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (640)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (640)
                      |.++..+++|+.-|.++++.+|....+....+.+
T Consensus       178 yek~ek~eealeDyKki~E~dPs~~ear~~i~rl  211 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSRREAREAIARL  211 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence            8888888888888888888888766655555444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.57  E-value=1.2e-05  Score=67.82  Aligned_cols=143  Identities=10%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (640)
                      +++....-..+.+...|.. .-.+.+|..+...|++.+|...|++++. +.-.++..+..++...+..+++..|...+++
T Consensus        71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~  149 (251)
T COG4700          71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED  149 (251)
T ss_pred             ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            3444444444444444432 2344556666666666666666666554 2344555566666666666666666666666


Q ss_pred             HHccCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          543 AIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       543 a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      ..+.+|..  +.....+|+.+...|.+.+|...|+.++...|+ +.+....+..+..+|+..+|..-+
T Consensus       150 l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         150 LMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             HhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHH
Confidence            66555432  455555666666666666666666666655554 445555555666666555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.57  E-value=3.4e-07  Score=68.08  Aligned_cols=68  Identities=29%  Similarity=0.443  Sum_probs=42.7

Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562          558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (640)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (640)
                      ..+|...+++++|+.++++++..+|+++..+..+|.++..+|++.+|+..|+++++..|+++.+...+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~   69 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR   69 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666665554443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.55  E-value=9.8e-06  Score=68.41  Aligned_cols=144  Identities=16%  Similarity=0.101  Sum_probs=122.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-cCcccHHHHHHHHHHHHHhcCHHHHH
Q 006562          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~  571 (640)
                      ..+.=+.+....-..+.+...|.. .-.+.+|..+...|++.+|...|++++. +...++..+..+++..+..+++..|.
T Consensus        66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~  144 (251)
T COG4700          66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ  144 (251)
T ss_pred             HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence            334445566666666666666643 4567899999999999999999999986 45677889999999999999999999


Q ss_pred             HHHHHHHHhCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          572 ECLQQVLYIDK--RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       572 ~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ..+++..+..|  ..+.....+|..+...|.+.+|...|+.++...|+ +.+....+..+.++|+..+|
T Consensus       145 ~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea  212 (251)
T COG4700         145 QTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREA  212 (251)
T ss_pred             HHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHH
Confidence            99999999888  45788999999999999999999999999999997 77888889999999977665

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=0.00012  Score=65.68  Aligned_cols=225  Identities=16%  Similarity=0.132  Sum_probs=109.7

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------------H-HHHHHHHHHHHHccCHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------------------P-EALIGRGTARAFQRELEAAISDFTE  440 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~  440 (640)
                      ...+|...-.++.....+++|...+...-+.+..+                  | .....-|.+....|+..+.+.-+..
T Consensus        68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~  147 (366)
T KOG2796|consen   68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK  147 (366)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            34556666666677777777776666554443211                  1 1223345555566666666555444


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHH
Q 006562          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSA  519 (640)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~  519 (640)
                      ....-.       .+-.........+..+..+++-+      ..+.+.+..++...|+|.-.+..+.+.++.+ |.++..
T Consensus       148 L~~~V~-------~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L  214 (366)
T KOG2796|consen  148 LKTVVS-------KILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQL  214 (366)
T ss_pred             HHHHHH-------HHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHH
Confidence            332100       01111111111122233333221      1234445555555555555555555555554 344555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccC------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (640)
                      ...+|.+..+.|+.+.|..+|++.-+..      .....+..+.+.++.-.+++..|...+.+++..+|.++.+-...|.
T Consensus       215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL  294 (366)
T KOG2796|consen  215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL  294 (366)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence            5555555555555555555555332211      1112333444455555555555555555555555555555555555


Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCC
Q 006562          594 LLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      |....|+..+|++.++.+++..|.
T Consensus       295 cllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  295 CLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCc
Confidence            555555555555555555555554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.50  E-value=4.7e-07  Score=88.55  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=61.0

Q ss_pred             CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA---YILKGCAFSALGRKEEALSVWEKGYEH  132 (640)
Q Consensus        67 ~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a---~~~~g~~y~~~g~~~~A~~~~~~al~~  132 (640)
                      .++..++|+|.+|+++|+|++|+..|++||+++|++.++   |+.+|.+|..+|++++|+.+|++|+++
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344558999999999999999999999999999999965   999999999999999999999999765

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.48  E-value=7.4e-06  Score=67.31  Aligned_cols=85  Identities=18%  Similarity=0.201  Sum_probs=65.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA---DILH  487 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~  487 (640)
                      .+..++..|...+..|+|.+|++.|+.+....|..   ..+...++.+|+..+++++|+..+++.++++|.++   .+++
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            35677788888888888888888888888877754   45777888888888888888888888888888774   4677


Q ss_pred             HHHHHHHhcCC
Q 006562          488 ERGIVNFKFKD  498 (640)
Q Consensus       488 ~la~~~~~~~~  498 (640)
                      ..|.+++.+..
T Consensus        89 ~~gL~~~~~~~   99 (142)
T PF13512_consen   89 MRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHhh
Confidence            77777766554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=3.9e-05  Score=79.15  Aligned_cols=224  Identities=18%  Similarity=0.120  Sum_probs=153.5

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562          403 IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       403 ~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (640)
                      .++++.+ +|+  +.-...|.+...+|..++|..+|++.-..+        .+-..|...|.|++|.+..+.--++.  -
T Consensus       791 AlR~a~q-~~~--e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKlyQs~g~w~eA~eiAE~~DRiH--L  857 (1416)
T KOG3617|consen  791 ALRRAQQ-NGE--EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKLYQSQGMWSEAFEIAETKDRIH--L  857 (1416)
T ss_pred             HHHHHHh-CCc--chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHHHHhcccHHHHHHHHhhcccee--h
Confidence            3444444 333  333455677788899999999999976543        57788899999999988776533222  2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH----------HHhCC----------CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562          483 ADILHERGIVNFKFKDFNAAVEDLSAC----------VKLDK----------ENKSAYTYLGLALSSIGEYKKAEEAHLK  542 (640)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~  542 (640)
                      ...|+..+..+...++.+.|+++|+++          +.-+|          .++..|.+.|..+...|+.+.|+.+|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            347889999999999999999999875          22233          3456788889999999999999999988


Q ss_pred             HHccC---------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC-----------
Q 006562          543 AIQLD---------------------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-----------  584 (640)
Q Consensus       543 a~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~-----------  584 (640)
                      +-...                     ..+..+.+.+|+.|...|+..+|+.+|.++-..      ...+           
T Consensus       938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen  938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred             hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            75432                     234567789999999999999999999887432      2111           


Q ss_pred             ---hHHHHHHHHHHHhcC-CHHHHHHHHHHh------h-----------------ccCC-CCHHHHHHHHHHHHHcCCcc
Q 006562          585 ---SKAYHLRGLLLHGLG-QHKKAIKDLSSG------L-----------------GIDP-SNIECLYLRASCYHAIGEYR  636 (640)
Q Consensus       585 ---~~~~~~la~~~~~~g-~~~~A~~~~~~a------l-----------------~~~p-~~~~~~~~la~~~~~~g~~~  636 (640)
                         +.-....|..|...| +...|...|.+|      +                 .++| .++..+..-+..+....+|+
T Consensus      1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred             hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence               111122233344444 444444444332      1                 1233 46778888888888888888


Q ss_pred             ccc
Q 006562          637 EAV  639 (640)
Q Consensus       637 ~Al  639 (640)
                      .|+
T Consensus      1098 kAV 1100 (1416)
T KOG3617|consen 1098 KAV 1100 (1416)
T ss_pred             HHH
Confidence            875

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.47  E-value=0.00077  Score=70.92  Aligned_cols=215  Identities=13%  Similarity=0.032  Sum_probs=160.1

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      ...++.+..|+...+....|..+++.|..++|..+++..-...+++...+-.+-.+|..+|++++|..+|++++..+|. 
T Consensus        31 ~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-  109 (932)
T KOG2053|consen   31 KLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-  109 (932)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-
Confidence            3567778899999999999999999999999998888877788888899999999999999999999999999999999 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHhcCCHH---------HHHHHHHHHHHhC-CCc-
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI-LHERGIVNFKFKDFN---------AAVEDLSACVKLD-KEN-  516 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~~~~~---------~A~~~~~~al~~~-~~~-  516 (640)
                      .+....+=.+|.+.+.|.+-.+.--+..+..|+.+.. |..+..++......+         -|....++.++.. +-. 
T Consensus       110 eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s  189 (932)
T KOG2053|consen  110 EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIES  189 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccch
Confidence            7777788888888888877666666666778887654 444444444333322         3445555555554 211 


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH-c-cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAI-Q-LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~-~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      ..-....-.++..+|++++|...+..-+ + ..+.+...-......+...+++.+-.+...+++...+++
T Consensus       190 ~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  190 EAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence            1112234456677899999999884322 2 233344444556677778889999999988988888876

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=98.42  E-value=0.00036  Score=66.25  Aligned_cols=248  Identities=17%  Similarity=0.112  Sum_probs=181.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHH
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPM--YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-EAWKRRGQARAA  461 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~  461 (640)
                      +..|.+....|+-..|.+.-.+.-++-..  .+-++..-+..-.-.|+++.|.+-|+-.+. +|..- -.+..+-.--..
T Consensus        88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr  166 (531)
T COG3898          88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQR  166 (531)
T ss_pred             HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHh
Confidence            34566677788999999988887644333  356667778888889999999999998874 33321 122222233356


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCc---HHHHHHHHHHHH-HcCCHH
Q 006562          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD---KEN---KSAYTYLGLALS-SIGEYK  534 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~---~~~~~~la~~~~-~~g~~~  534 (640)
                      .|..+.|+.+-+++....|.-+.++...-...+..|+|+.|++..+......   ++.   ..+...-+.... -.-+..
T Consensus       167 ~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~  246 (531)
T COG3898         167 LGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA  246 (531)
T ss_pred             cccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence            7999999999999999999999988888888999999999999998766532   221   112222222222 234678


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH---h
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS---G  611 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---a  611 (640)
                      .|.....++.++.|+...+-..-+..++..|+..++-.+++.+.+..|. |.++.  ..++.+.|+.  ++.-+++   .
T Consensus       247 ~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~--lY~~ar~gdt--a~dRlkRa~~L  321 (531)
T COG3898         247 SARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIAL--LYVRARSGDT--ALDRLKRAKKL  321 (531)
T ss_pred             HHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHH--HHHHhcCCCc--HHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999998874 44322  2334455554  4444444   4


Q ss_pred             hccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          612 LGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       612 l~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ..+.|++.+..+..+..-...|++..|
T Consensus       322 ~slk~nnaes~~~va~aAlda~e~~~A  348 (531)
T COG3898         322 ESLKPNNAESSLAVAEAALDAGEFSAA  348 (531)
T ss_pred             HhcCccchHHHHHHHHHHHhccchHHH
Confidence            467899999999999998888887654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.38  E-value=8.8e-07  Score=66.78  Aligned_cols=63  Identities=25%  Similarity=0.328  Sum_probs=53.8

Q ss_pred             hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562           70 QDICNRAFCYSQLELHKHVIRDCDKALQLD-------PTLLQAYILKGCAFSALGRKEEALSVWEKGYEH  132 (640)
Q Consensus        70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~-------P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~  132 (640)
                      .++.++|.+|..+|+|++|+..+++|+++.       |..+.++..+|.+|..+|++++|+..|++|+++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            458899999999999999999999999762       223568999999999999999999999999554

...

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=0.00011  Score=71.44  Aligned_cols=269  Identities=17%  Similarity=0.104  Sum_probs=193.7

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQI-LKEDPM--------YPEALIGRGTARAFQRELEAAISDFTE  440 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~-l~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (640)
                      ...+......++..++.++..++..|+|..|.+.+... +...|.        .-..|.++|-++++.|.|..+..+|.+
T Consensus       229 vK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~k  308 (696)
T KOG2471|consen  229 VKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLK  308 (696)
T ss_pred             hhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHH
Confidence            34444555577889999999999999999999987653 222232        123467899999999999999999999


Q ss_pred             HHH-h--------CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----
Q 006562          441 AIQ-S--------NP---------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD----  498 (640)
Q Consensus       441 al~-~--------~p---------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----  498 (640)
                      +++ .        .|         ...++.++.|..|...|++-.|.++|.++......+|..|..++.+.+...+    
T Consensus       309 AL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~~~l~  388 (696)
T KOG2471|consen  309 ALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQKGLL  388 (696)
T ss_pred             HHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhh
Confidence            995 1        11         1346889999999999999999999999999999999999999999764210    


Q ss_pred             ---------------------------------------------HHHHHHHHHHHHHhCCC------------------
Q 006562          499 ---------------------------------------------FNAAVEDLSACVKLDKE------------------  515 (640)
Q Consensus       499 ---------------------------------------------~~~A~~~~~~al~~~~~------------------  515 (640)
                                                                   .+-|.-+++.++-+-|.                  
T Consensus       389 ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLrnal~Ll~e~q~~~~~~~~a~ns~~~g  468 (696)
T KOG2471|consen  389 EEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLRNALYLLNEKQDLGSILSVAMNSTKEG  468 (696)
T ss_pred             hhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHHhhhhcCchhhcchhhhhhhccccccC
Confidence                                                         22355566666543210                  


Q ss_pred             ----------------------------cH-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH
Q 006562          516 ----------------------------NK-----------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH  556 (640)
Q Consensus       516 ----------------------------~~-----------~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  556 (640)
                                                  .+           .++-..+.+-..+|+.-.|+..-.+.++. |+-..++..
T Consensus       469 ~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kf  547 (696)
T KOG2471|consen  469 SSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKF  547 (696)
T ss_pred             CCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHH
Confidence                                        00           13445667777899999999998888875 444556666


Q ss_pred             HHHHH-----HHhcCHHHHHHHHHHHH------H-----------------hCC----------CC-----hHHHHHHHH
Q 006562          557 LTQFY-----QDLANSEKALECLQQVL------Y-----------------IDK----------RF-----SKAYHLRGL  593 (640)
Q Consensus       557 la~~~-----~~~g~~~~A~~~~~~al------~-----------------~~~----------~~-----~~~~~~la~  593 (640)
                      +|.+|     +.+.+..+|...+.--+      .                 ++|          ..     ...++.+|.
T Consensus       548 LGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~  627 (696)
T KOG2471|consen  548 LGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAA  627 (696)
T ss_pred             HHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHH
Confidence            66554     45677777776655411      0                 011          01     124788999


Q ss_pred             HHHhcCCHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHcCCccccc
Q 006562          594 LLHGLGQHKKAIKDLSSGLGIDP--SNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++.-+|++++|...+..+..+-+  .++.+......+-.++|+...|+
T Consensus       628 a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al  675 (696)
T KOG2471|consen  628 ALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDAL  675 (696)
T ss_pred             HHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchH
Confidence            99999999999999998888776  45666666666677888877664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=0.00037  Score=62.58  Aligned_cols=186  Identities=11%  Similarity=0.096  Sum_probs=124.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  465 (640)
                      .-|.+....|+..+.+.-+......-       ..+-.........+..++.+++-+      ..+.+.+..++.-.+.|
T Consensus       127 lhAe~~~~lgnpqesLdRl~~L~~~V-------~~ii~~~e~~~~~ESsv~lW~KRl------~~Vmy~~~~~llG~kEy  193 (366)
T KOG2796|consen  127 LHAELQQYLGNPQESLDRLHKLKTVV-------SKILANLEQGLAEESSIRLWRKRL------GRVMYSMANCLLGMKEY  193 (366)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHH-------HHHHHHHHhccchhhHHHHHHHHH------HHHHHHHHHHHhcchhh
Confidence            33555566677777666555443211       111112222222344555555543      23566677777777888


Q ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          466 VEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       466 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      .-....+.+.++.+ |..+.....+|.+.++.|+.+.|..+++.+-+..      .....+..+.+.++.-.+++..|..
T Consensus       194 ~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r  273 (366)
T KOG2796|consen  194 VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHR  273 (366)
T ss_pred             hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHH
Confidence            88888888888776 5567777778888888888888888877543322      2234556667777777888888888


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      .+.+++..+|.++.+.++.|.|....|+..+|++.++.++...|..
T Consensus       274 ~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~  319 (366)
T KOG2796|consen  274 FFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH  319 (366)
T ss_pred             HHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            8888888888888888888888888888888888888888887753

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.31  E-value=1.4e-05  Score=77.62  Aligned_cols=218  Identities=12%  Similarity=0.011  Sum_probs=155.9

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC--C
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----GEAWKRRGQARAALGESVEAIQDLSKALEF------EP--N  481 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p--~  481 (640)
                      ...+++.|.+++....+..|++.....+..-...     ..+-...-..+....+-++|+.++.-.-++      .+  +
T Consensus       100 t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn  179 (696)
T KOG2471|consen  100 TVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGN  179 (696)
T ss_pred             hHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence            3556777778877778888887776665443211     112223334455555666666554322211      00  0


Q ss_pred             C-------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562          482 S-------------------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       482 ~-------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (640)
                      +                         ..+.......+..+.+...+..-.+.++....+.+.+....+..++..|++.+|
T Consensus       180 ~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA  259 (696)
T KOG2471|consen  180 HIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKA  259 (696)
T ss_pred             ccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHH
Confidence            0                         113333445566777777787778888888888888999999999999999999


Q ss_pred             HHHHHHHH-ccCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---------CC---------CChHHHH
Q 006562          537 EEAHLKAI-QLDRN--------FLEAWGHLTQFYQDLANSEKALECLQQVLYI---------DK---------RFSKAYH  589 (640)
Q Consensus       537 ~~~~~~a~-~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~~---------~~~~~~~  589 (640)
                      .+.+...- ...|.        ...+|.++|.+++++|.|.-+..+|.++++.         .|         ...++.+
T Consensus       260 ~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilY  339 (696)
T KOG2471|consen  260 MKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILY  339 (696)
T ss_pred             HHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHH
Confidence            99886542 22222        2346789999999999999999999999951         11         3456889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (640)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (640)
                      +.|..|...|++-.|.++|.+++.....+|..|..+|.|+...
T Consensus       340 NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  340 NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998754

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.31  E-value=6.3e-06  Score=69.85  Aligned_cols=91  Identities=18%  Similarity=0.259  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHccc-CchhHHHhHHHHHHhhh----------cHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--
Q 006562           52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLE----------LHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR--  118 (640)
Q Consensus        52 y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g----------~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~--  118 (640)
                      |+.|.+.|+.....+ .++..+++-|.+++.+.          -+++|+.-++.||.++|+..++++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            578999999999999 56677888888887774          45678888999999999999999999999999875  


Q ss_pred             ---------HHHHHHHHHHHHhhccCChHHHHH
Q 006562          119 ---------KEEALSVWEKGYEHALHQSADLKQ  142 (640)
Q Consensus       119 ---------~~~A~~~~~~al~~~~~~~~~~~~  142 (640)
                               |+.|..+|++|....|+.....+.
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks  119 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS  119 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence                     778888888998888876554433

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.30  E-value=3.1e-05  Score=61.26  Aligned_cols=91  Identities=25%  Similarity=0.311  Sum_probs=45.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHhcC
Q 006562          524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLG  599 (640)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g  599 (640)
                      |..+...|+.+.|++.|.+++.+.|..+.+|++.+..+..+|+.++|+.-+++++++..+.    ..++...|.+|..+|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            4444445555555555555555555555555555555555555555555555555443222    123444555555555


Q ss_pred             CHHHHHHHHHHhhcc
Q 006562          600 QHKKAIKDLSSGLGI  614 (640)
Q Consensus       600 ~~~~A~~~~~~al~~  614 (640)
                      +-+.|...|+.+-++
T Consensus       130 ~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  130 NDDAARADFEAAAQL  144 (175)
T ss_pred             chHHHHHhHHHHHHh
Confidence            555555555544433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=0.00018  Score=66.83  Aligned_cols=159  Identities=14%  Similarity=0.063  Sum_probs=112.5

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHh
Q 006562          420 GRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNS---ADILHERGIVNFK  495 (640)
Q Consensus       420 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~  495 (640)
                      .-+.+.+..|++.+|-...++.++..|.+.-++..--..++..|+...-...+++.+.. +|+.   ..+.-.++..+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34455666777888888888888888887777777777777788877777777777765 5544   3344456666777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHH
Q 006562          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~  571 (640)
                      .|-|++|.+..+++++++|.+..+....+.++...|++.++.+...+.-..-...    ..-|...+.++...+.|+.|+
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            7888888888888888888888787888888888888888887776654332211    223445667777778888888


Q ss_pred             HHHHHHH
Q 006562          572 ECLQQVL  578 (640)
Q Consensus       572 ~~~~~al  578 (640)
                      ++|.+-+
T Consensus       268 eIyD~ei  274 (491)
T KOG2610|consen  268 EIYDREI  274 (491)
T ss_pred             HHHHHHH
Confidence            8877654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.23  E-value=2.4e-05  Score=76.89  Aligned_cols=70  Identities=17%  Similarity=0.311  Sum_probs=64.3

Q ss_pred             ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---LIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      ..+|.++..++++|..++..|+|++|+..|+++++++|++..+   |+++|.+|..+|++++|+.+++++++.
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999999998854   999999999999999999999999987

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00026  Score=62.38  Aligned_cols=179  Identities=15%  Similarity=0.158  Sum_probs=119.0

Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C--CcHHHHHHHHHHHHHcCCHHH
Q 006562          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN----P--SAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~~~~~~  467 (640)
                      .+.+++|.++|.+              -|..|....+|..|-..|.++-+..    .  +....|...+.+|.. +++.+
T Consensus        27 ~~k~eeAadl~~~--------------Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~e   91 (288)
T KOG1586|consen   27 SNKYEEAAELYER--------------AANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEE   91 (288)
T ss_pred             CcchHHHHHHHHH--------------HHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHH
Confidence            3567777666655              3777777778888877777775432    1  123455555565544 48899


Q ss_pred             HHHHHHHHHHhCCCCHH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHH
Q 006562          468 AIQDLSKALEFEPNSAD------ILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~------~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~  534 (640)
                      |+.++++++++..+-..      -+..+|.+|... .++++|+.+|+++-+.....      ...+...+......++|.
T Consensus        92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~  171 (288)
T KOG1586|consen   92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS  171 (288)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999988888654432      344677777655 78888888888887664332      234555666677788888


Q ss_pred             HHHHHHHHHHccCcccH-------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562          535 KAEEAHLKAIQLDRNFL-------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (640)
                      +|+..|++.....-+++       ..++.-|.+++-..+.-.+...+++..+.+|.....
T Consensus       172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence            88888888776544432       233455666666677777777788888888865443

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.0053  Score=60.29  Aligned_cols=213  Identities=12%  Similarity=0.100  Sum_probs=142.6

Q ss_pred             HcCChHHHHHHHHHHHHhC------CCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC-------c
Q 006562          393 NEGKYASAISIFDQILKED------PMY--------PEALIGRGTARAFQRELEAAISDFTEAIQS---NPS-------A  448 (640)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~------~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~  448 (640)
                      ..|-|++|.++-++++...      +..        ...+-.+..|-.-.|++.+|++....+.+.   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            4455666666666665431      111        123345666777789999999888777654   343       2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---------  516 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------  516 (640)
                      +..+..+|......+.++.|...|..+.+.....   ..+..++|.+|...|+-+.-.+.++..   .|.+         
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l  443 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRL  443 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHH
Confidence            4466778888888899999999999988875432   234567888999988766555555443   3332         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCChH
Q 006562          517 -KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYID---KRFSK  586 (640)
Q Consensus       517 -~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~~~~~  586 (640)
                       ..+++..|...+.++++.+|...+.+.++....      ..-.+..++.+....|+..++.....-++...   |+.+.
T Consensus       444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~v  523 (629)
T KOG2300|consen  444 EASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPV  523 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchH
Confidence             356777888888999999999999998887521      13455678888888999999988888777654   34333


Q ss_pred             ---HHHHHHHHHHhcCC--HHHHHHHH
Q 006562          587 ---AYHLRGLLLHGLGQ--HKKAIKDL  608 (640)
Q Consensus       587 ---~~~~la~~~~~~g~--~~~A~~~~  608 (640)
                         ....+-.++...|+  .+...+.+
T Consensus       524 qLws~si~~~L~~a~g~~~~~~e~e~~  550 (629)
T KOG2300|consen  524 QLWSSSILTDLYQALGEKGNEMENEAF  550 (629)
T ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence               23345566777776  44444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.18  E-value=3.8e-06  Score=63.26  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=11.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          587 AYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      ++..+|.++..+|++++|+.++++++
T Consensus        48 ~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen   48 TLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33444444444444444444444443

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.15  E-value=2.5e-06  Score=51.57  Aligned_cols=32  Identities=31%  Similarity=0.412  Sum_probs=30.5

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562           92 CDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (640)
Q Consensus        92 ~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~  123 (640)
                      |++||+++|+++.+|+.+|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            78999999999999999999999999999996

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=0.00027  Score=65.67  Aligned_cols=159  Identities=14%  Similarity=0.058  Sum_probs=133.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL-DKEN---KSAYTYLGLALSS  529 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---~~~~~~la~~~~~  529 (640)
                      .-+.+....|++.+|...+++.++-.|.+.-++..--.+++..|+...-...+++.+.. +++-   ..+.-.++..+..
T Consensus       108 ~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E  187 (491)
T KOG2610|consen  108 AKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE  187 (491)
T ss_pred             hhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH
Confidence            34556677899999999999999999999888888889999999999999999999877 6655   3445567788889


Q ss_pred             cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHhcCCHHHHH
Q 006562          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF----SKAYHLRGLLLHGLGQHKKAI  605 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~la~~~~~~g~~~~A~  605 (640)
                      .|-|++|.+..+++++++|.+..+....+.++...|++.++.+++.+.-..-...    ..-|...|.++..-+.|+.|+
T Consensus       188 ~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~al  267 (491)
T KOG2610|consen  188 CGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKAL  267 (491)
T ss_pred             hccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHH
Confidence            9999999999999999999999999999999999999999999988764332211    123566788888899999999


Q ss_pred             HHHHHhh
Q 006562          606 KDLSSGL  612 (640)
Q Consensus       606 ~~~~~al  612 (640)
                      +.|.+-+
T Consensus       268 eIyD~ei  274 (491)
T KOG2610|consen  268 EIYDREI  274 (491)
T ss_pred             HHHHHHH
Confidence            9998765

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.14  E-value=4.7e-05  Score=64.69  Aligned_cols=86  Identities=27%  Similarity=0.336  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--
Q 006562          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE--  464 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--  464 (640)
                      |+.|.+.++.....+|.+++.++.-|.++..+.+          +++|+.-|++++.++|+..++++.+|.+|...+.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            5667777777777777777777777666655432          4556666666677777777777777766665432  


Q ss_pred             ---------HHHHHHHHHHHHHhCCCC
Q 006562          465 ---------SVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       465 ---------~~~A~~~~~~al~~~p~~  482 (640)
                               |++|..+|+++...+|++
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                     344444444444444444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.12  E-value=0.00018  Score=69.17  Aligned_cols=133  Identities=15%  Similarity=0.054  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (640)
                      +|..+.....+.+..+.|...|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344444444444445555555555553333344455555555444 2333335555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          496 FKDFNAAVEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      .|+.+.|...|++++..-+...   .+|......-...|+.+.......++.+..|.
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            5555555555555554443332   33444444444444444444444444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.10  E-value=0.00039  Score=68.58  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=75.2

Q ss_pred             HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--------------------
Q 006562          389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--------------------  448 (640)
Q Consensus       389 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------------------  448 (640)
                      ....+..+.+.-++.-.++++.+|+.+.++..+|.-..  .-..+|..+++++++.....                    
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R  253 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR  253 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence            34566788999999999999999999999888876432  23567777777776532110                    


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          449 -----GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       449 -----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                           ..+...+|.+..+.|+.++|++.++..++..|.  +..++.++..++...+.|.++...+.+-
T Consensus       254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                 123344556666666666666666666655543  2335555666666666666665555553

The molecular function of this protein is uncertain.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=0.0034  Score=55.60  Aligned_cols=170  Identities=13%  Similarity=0.112  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH------
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKED-----PM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE------  450 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------  450 (640)
                      .+..-|..|....++..|-..|.++-+..     .+ ....+...+.||. .++..+|+.++++++++..+-..      
T Consensus        36 l~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk  114 (288)
T KOG1586|consen   36 LYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAK  114 (288)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence            33344444555555555555555554321     11 2344455555554 45899999999999988765433      


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH------
Q 006562          451 AWKRRGQARAAL-GESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------  517 (640)
Q Consensus       451 ~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~------  517 (640)
                      .+..+|.+|..- .++++|+.+|+++-+.....      ...+.-.+......++|.+|+..|++.....-+++      
T Consensus       115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~  194 (288)
T KOG1586|consen  115 HHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA  194 (288)
T ss_pred             hhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence            345788888665 89999999999998876543      22455667777788999999999999887766554      


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH
Q 006562          518 -SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA  553 (640)
Q Consensus       518 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  553 (640)
                       ..++.-|.+++...+.-.+...+++....+|.....
T Consensus       195 KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds  231 (288)
T KOG1586|consen  195 KDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS  231 (288)
T ss_pred             HHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence             344556788888888888889999999999987443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.08  E-value=7.8e-06  Score=53.24  Aligned_cols=42  Identities=24%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 006562           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC  111 (640)
Q Consensus        70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~  111 (640)
                      ..+..+|.+|.++|++++|+..++++++.+|+++.++..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            457788899999999999999999999999999999888875

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.08  E-value=0.00018  Score=69.05  Aligned_cols=134  Identities=13%  Similarity=0.100  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (640)
                      +|........+.+..+.|..+|.++++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+..
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~   82 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK   82 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            344455555566667777777777775555556777777777555 4555557777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          462 LGESVEAIQDLSKALEFEPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      .++.+.|..+|++++..-|...   .+|......-...|+.+...+..+++.+..|.+
T Consensus        83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~  140 (280)
T PF05843_consen   83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED  140 (280)
T ss_dssp             TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred             hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence            7777777777777777655443   466666677777777777777777777776663

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=98.06  E-value=0.0011  Score=65.43  Aligned_cols=167  Identities=15%  Similarity=0.088  Sum_probs=118.1

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------
Q 006562          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN-------------------  481 (640)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-------------------  481 (640)
                      +..-..+..+...-++...+|++++|+.+++|..+|.-.  ..-..+|..+++++++....                   
T Consensus       174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~  251 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH  251 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence            334445667888899999999999999999998887532  23456677777776653210                   


Q ss_pred             --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CcccHH
Q 006562          482 --S----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLE  552 (640)
Q Consensus       482 --~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~  552 (640)
                        +    ..+...+|.+..+.|+.++|++.++..++..|.  +..++.++..++...+.|.++...+.+.-++ -|.+..
T Consensus       252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence              0    235567889999999999999999999988765  4568888999999999999999988886433 255555


Q ss_pred             HHHHHHHHHHH-hcC---------------HHHHHHHHHHHHHhCCCChHHHH
Q 006562          553 AWGHLTQFYQD-LAN---------------SEKALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       553 ~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~~~~~~~~~  589 (640)
                      ..+.-+.+-.+ .++               -..|++.+.++++.+|..+..+.
T Consensus       332 i~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  332 ICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            55544443322 111               13467888899988887665443

The molecular function of this protein is uncertain.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=98.06  E-value=0.0031  Score=61.63  Aligned_cols=103  Identities=15%  Similarity=0.085  Sum_probs=55.2

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHhCCCcH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAF---QRELEAAISDFTEA-IQSNPSAG  449 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~  449 (640)
                      -.+++....+-..|....+|+.=+++.+.+-..    -++.+.+.+..|.++.+   .|+.++|+..+..+ ....+.++
T Consensus       138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~  217 (374)
T PF13281_consen  138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP  217 (374)
T ss_pred             hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence            344455555555566666666666666555444    23345555556666655   56666666666663 33344455


Q ss_pred             HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCC
Q 006562          450 EAWKRRGQARAAL---------GESVEAIQDLSKALEFEP  480 (640)
Q Consensus       450 ~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~p  480 (640)
                      +.+..+|.+|-..         ...++|+.+|.++.+..|
T Consensus       218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~  257 (374)
T PF13281_consen  218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP  257 (374)
T ss_pred             HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence            6666666655321         124445555555555553

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.06  E-value=0.0037  Score=55.74  Aligned_cols=194  Identities=14%  Similarity=0.085  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCcH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG  449 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~  449 (640)
                      ...+..-+..+....+|++|...+.++.+-..++      +.++-..+.+......+.++..+++++....     |+.+
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4455666677777889999999988888644433      2345556666667777888888888886553     2222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCcH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENK  517 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~  517 (640)
                      ..-...+--....-++++|+..|++++.+...+      .+.+...++++.+...+.+|-..+.+-...      .+...
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            222223333445567788888888877664433      234555667777777777776666554322      22333


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccC----cccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLD----RNFLEAWGHLTQFYQDLANSEKALECLQ  575 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (640)
                      ..+.....++....+|..|..+++...++.    +++..+..+|-..| ..|+.++....+.
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            444445555556667778877777765542    33444555544443 4566666555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.02  E-value=9e-06  Score=49.62  Aligned_cols=33  Identities=27%  Similarity=0.315  Sum_probs=22.1

Q ss_pred             hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc
Q 006562           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (640)
Q Consensus        70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~  102 (640)
                      ..|+++|.+|..+|++++|+..|++||+++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            346677777777777777777777777777753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.00  E-value=1.4e-05  Score=52.05  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (640)
                      .++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456666666666666666666666666666666666666654

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.97  E-value=0.0013  Score=64.16  Aligned_cols=181  Identities=14%  Similarity=0.007  Sum_probs=97.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCCHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAA---LGESVEAIQDLSK-ALEFEPNSADI  485 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~  485 (640)
                      ++.+...+-.+|....+|+.-+...+..-..    .++.+.+.+.+|.++.+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3455666666777777777777777766554    33455666677777776   7777777777777 44445566777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      +..+|.+|-..-            ++....+.             ...++|+.+|.++++..|+. ..-.+++.++...|
T Consensus       220 ~gL~GRIyKD~~------------~~s~~~d~-------------~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g  273 (374)
T PF13281_consen  220 LGLLGRIYKDLF------------LESNFTDR-------------ESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAG  273 (374)
T ss_pred             HHHHHHHHHHHH------------HHcCccch-------------HHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcC
Confidence            777777764320            00000000             11445555555555555432 12223333333333


Q ss_pred             CHHHHHHHHHHHH--------H----hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          566 NSEKALECLQQVL--------Y----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       566 ~~~~A~~~~~~al--------~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      ...+...-+++..        +    ..-.+.+.+..++.+..-.|++++|.+.+++++.+.|....
T Consensus       274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            3222111111110        0    01133445555666677778888888888888777766543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00014  Score=64.36  Aligned_cols=95  Identities=20%  Similarity=0.170  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      +-..|..++....|..|+..|.+++..+|..+..+.+.+.||++..+++.+.....+++++.|+....++.+|.......
T Consensus        13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            34567778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 006562          464 ESVEAIQDLSKALEF  478 (640)
Q Consensus       464 ~~~~A~~~~~~al~~  478 (640)
                      .|++|+..+.++..+
T Consensus        93 ~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   93 GYDEAIKVLQRAYSL  107 (284)
T ss_pred             cccHHHHHHHHHHHH
Confidence            999999999999665

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.0025  Score=56.77  Aligned_cols=196  Identities=16%  Similarity=0.114  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFE-----PNSA  483 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~  483 (640)
                      ...+..-+.+|....++++|..++.++.+-..++      +.++-..+.+...+..+.++..+++++..+.     |+..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA  110 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA  110 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence            4567777888888999999999999998655443      2345556667777888889999999887763     3323


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CcccH
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFL  551 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~  551 (640)
                      ..-...+-=....-++++|+.+|++++.+-..+      .+.+-..++++.+...+++|-..+.+-...      .++..
T Consensus       111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~  190 (308)
T KOG1585|consen  111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC  190 (308)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence            333334444556678888999888888764433      244556678888888888887777664432      23333


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          552 EAWGHLTQFYQDLANSEKALECLQQVLYID----KRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      ..+.....+|....+|..|...++..-+..    |++..+..+|-.. +..|+.++....+..-
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a-yd~gD~E~~~kvl~sp  253 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA-YDEGDIEEIKKVLSSP  253 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH-hccCCHHHHHHHHcCh
Confidence            445555566666778888888888765542    2334444444433 3567777766666543

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.88  E-value=0.033  Score=54.97  Aligned_cols=208  Identities=17%  Similarity=0.159  Sum_probs=145.9

Q ss_pred             HccCHHHHHHHHHHHHHhCCC------cHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------C
Q 006562          427 FQRELEAAISDFTEAIQSNPS------AGE--------AWKRRGQARAALGESVEAIQDLSKALEF---EPN-------S  482 (640)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~------~~~--------~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~-------~  482 (640)
                      ..|-+++|.++-++++.....      ...        .+-.+..+-.-.|++.+|++....+...   .|.       .
T Consensus       287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~  366 (629)
T KOG2300|consen  287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE  366 (629)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence            457788888888888754221      111        2334566667789999999888777665   343       2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-------HH
Q 006562          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-N--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LE  552 (640)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~  552 (640)
                      +.++..+|......|.++.|...|..+.+.-.. +  .....++|.+|...|+-+.-.+.++..-..+...       ..
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~  446 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEAS  446 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHH
Confidence            457788888889999999999999999887543 2  2445678999999888666555555433222111       45


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc---CCCCHHHHH
Q 006562          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKR------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---DPSNIECLY  623 (640)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~  623 (640)
                      +++..|...+.++++.+|...+.+.++....      ....+..++.+..-.|+..++.+...-++++   -|+.+.-++
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLw  526 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLW  526 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHH
Confidence            6777888889999999999999999877521      1235677899999999999999888877754   455543333


Q ss_pred             ---HHHHHHHHcCC
Q 006562          624 ---LRASCYHAIGE  634 (640)
Q Consensus       624 ---~la~~~~~~g~  634 (640)
                         .+-.++...|+
T Consensus       527 s~si~~~L~~a~g~  540 (629)
T KOG2300|consen  527 SSSILTDLYQALGE  540 (629)
T ss_pred             HHHHHHHHHHHhCc
Confidence               24455666665

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.88  E-value=0.0036  Score=56.46  Aligned_cols=235  Identities=17%  Similarity=0.187  Sum_probs=174.7

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HH
Q 006562          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EA  468 (640)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~-~A  468 (640)
                      +.....-..|+.+-..++.++|.+..+|...-.++..++ +..+-++++.++++.+|++-.+|...-.+....|++. .-
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE  132 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE  132 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence            344566789999999999999999999888777776654 6778899999999999999999999988888899888 78


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC-----CHHHHHHHHHH
Q 006562          469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG-----EYKKAEEAHLK  542 (640)
Q Consensus       469 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g-----~~~~A~~~~~~  542 (640)
                      ++..+.++..+.++..+|...-.+....+.++.-+.+..+.++.+-.+-.+|...-.+... .|     ..+.-+.+..+
T Consensus       133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~  212 (318)
T KOG0530|consen  133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD  212 (318)
T ss_pred             HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999887666666543222222 11     23345677788


Q ss_pred             HHccCcccHHHHHHHHHHHHH-hc--CHHHHHHHHHHHH-HhCCCChHHHHHHHHHHH------hcCCHH---HHHHHHH
Q 006562          543 AIQLDRNFLEAWGHLTQFYQD-LA--NSEKALECLQQVL-YIDKRFSKAYHLRGLLLH------GLGQHK---KAIKDLS  609 (640)
Q Consensus       543 a~~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~~~~~~~~~~la~~~~------~~g~~~---~A~~~~~  609 (640)
                      .+...|++..+|..|.-++.. .|  .+.+-........ .....+|..+.-+..+|.      ..+.-+   +|...++
T Consensus       213 ~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~  292 (318)
T KOG0530|consen  213 KILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYE  292 (318)
T ss_pred             HHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence            889999999999999888876 44  2344444444444 333355666655655552      233333   5666666


Q ss_pred             Hhh-ccCCCCHHHHHHH
Q 006562          610 SGL-GIDPSNIECLYLR  625 (640)
Q Consensus       610 ~al-~~~p~~~~~~~~l  625 (640)
                      ..- +.+|-....|...
T Consensus       293 ~La~~~DpiR~nyW~~~  309 (318)
T KOG0530|consen  293 DLAIKVDPIRKNYWRHK  309 (318)
T ss_pred             HHhhccCcHHHHHHHHH
Confidence            654 6777665555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.82  E-value=4.5e-05  Score=46.45  Aligned_cols=33  Identities=33%  Similarity=0.441  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562          103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (640)
Q Consensus       103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~  135 (640)
                      +++|+.+|.+|..+|++++|+.+|++|++++|+
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999888775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00072  Score=60.09  Aligned_cols=104  Identities=26%  Similarity=0.334  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILK--------EDPMY----------PEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------~~~~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                      +..+...|..++..|+|.+|...|+.++.        ..|..          ...+.+.+.|+...|+|-++++....++
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            56777889999999999999999998864        23443          2456677788888888888888888888


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006562          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD  484 (640)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  484 (640)
                      ...|.+..+++..|.+....-+.++|...|.++++++|.-..
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            888888888888888888888888888888888888775433

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.76  E-value=2.5e-05  Score=47.23  Aligned_cols=32  Identities=28%  Similarity=0.509  Sum_probs=19.7

Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |+++++++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45566666666666666666666666666654

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.75  E-value=5.3e-05  Score=74.19  Aligned_cols=110  Identities=25%  Similarity=0.341  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      .-..+...+..++|+.|+..|.++++++|+.+..+-..+..+...+++..|+..+.++++.+|....+|+..|.+....+
T Consensus         7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen    7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG   86 (476)
T ss_pred             hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence            34567778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      .+.+|...|+....+.|+++.+...+..+-
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~  116 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKIDECN  116 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence            999999999999999999988877665553

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.70  E-value=7.8e-05  Score=45.39  Aligned_cols=30  Identities=33%  Similarity=0.361  Sum_probs=15.9

Q ss_pred             HHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (640)
Q Consensus        72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~  101 (640)
                      ++.+|.+++++|++++|+..++++++++|+
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            445555555555555555555555555554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.0032  Score=58.25  Aligned_cols=149  Identities=18%  Similarity=0.164  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH--HH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG--QA  458 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~  458 (640)
                      .+.-+..+......|++.+|...|..++...|.+..+...++.|+...|+.+.|...+...-....... .....+  ..
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~l  212 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIEL  212 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHHH
Confidence            445566788889999999999999999999999999999999999999999999888776432222211 111111  22


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcC
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIG  531 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g  531 (640)
                      +.+.....+ ...+++.+..+|++.++.+.++..+...|+.+.|.+.+-..++.+..  +..+...+-.++...|
T Consensus       213 l~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         213 LEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            222222222 23456667788999999999999999999999999999888877543  3444444444444444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.68  E-value=0.017  Score=58.11  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C---------
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYID-K---------  582 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~---------  582 (640)
                      ...+...+.+....|.++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+... .         
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            34455555555555555555555555554331    124444555555555555555555555444410 0         


Q ss_pred             ------------------------CChHHHHHHHHHHHhc------CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHc
Q 006562          583 ------------------------RFSKAYHLRGLLLHGL------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAI  632 (640)
Q Consensus       583 ------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  632 (640)
                                              ....++..+|......      +..+++...|..+++.+|+...+|+.+|..+...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                                    0123455666666666      7778888888888888888888888777776554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.68  E-value=0.00011  Score=44.72  Aligned_cols=33  Identities=33%  Similarity=0.459  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562          103 LQAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (640)
Q Consensus       103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~  135 (640)
                      +++++.+|.+|..+|++++|+.+|++++++.|+
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            468999999999999999999999999888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.66  E-value=0.0032  Score=63.13  Aligned_cols=102  Identities=16%  Similarity=0.074  Sum_probs=90.1

Q ss_pred             HHcCCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (640)
                      ...|+...|+.++..++...|.. .....++|.+...-|-.-.|-.++.+++.+....|..++.+|.++..+.+.+.|++
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~  697 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE  697 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence            34788999999999999998865 34567899999999999999999999999998889999999999999999999999


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHH
Q 006562          607 DLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      .|+.+++.+|+++..-..|-.+-
T Consensus       698 ~~~~a~~~~~~~~~~~~~l~~i~  720 (886)
T KOG4507|consen  698 AFRQALKLTTKCPECENSLKLIR  720 (886)
T ss_pred             HHHHHHhcCCCChhhHHHHHHHH
Confidence            99999999999987766554443

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.00018  Score=70.79  Aligned_cols=101  Identities=23%  Similarity=0.075  Sum_probs=85.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCch-hHHHhHHHHHHhh---hcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYEI-QDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALG  117 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-~~~~~~A~~~~~~---g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g  117 (640)
                      .....|-.+.+..||..|.+++...|.. ..|.|||.++++-   |+---|+.+|..|+.++|...+||++++.++..++
T Consensus       380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~  459 (758)
T KOG1310|consen  380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT  459 (758)
T ss_pred             hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence            3445577788999999999999998544 5589999999886   68889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhhccCChHHHHH
Q 006562          118 RKEEALSVWEKGYEHALHQSADLKQ  142 (640)
Q Consensus       118 ~~~~A~~~~~~al~~~~~~~~~~~~  142 (640)
                      ++.+|+.+...+....|...+...+
T Consensus       460 r~~eal~~~~alq~~~Ptd~a~~~~  484 (758)
T KOG1310|consen  460 RYLEALSCHWALQMSFPTDVARQNF  484 (758)
T ss_pred             hHHHhhhhHHHHhhcCchhhhhhhh
Confidence            9999999888777777755443333

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.58  E-value=0.13  Score=53.44  Aligned_cols=36  Identities=14%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       583 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      ..+.++..++..+...|++++|-+.|-.+++++.-+
T Consensus       993 k~~~vhlk~a~~ledegk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen  993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred             cCccchhHHhhhhhhccchhhhhHhhHHHhhccccc
Confidence            456788889999999999999999999999886543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.57  E-value=0.018  Score=61.23  Aligned_cols=238  Identities=16%  Similarity=0.045  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHc-----CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhC
Q 006562          381 VDFRLSRGIAQVNE-----GKYASAISIFDQILKE-----DPMYPEALIGRGTARAFQR-----ELEAAISDFTEAIQSN  445 (640)
Q Consensus       381 ~~~~~~~a~~~~~~-----g~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~  445 (640)
                      ......+|.+++.-     .|.+.|+.+|..+...     ....+.+.+.+|.+|....     ++..|+.++.++-...
T Consensus       244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g  323 (552)
T KOG1550|consen  244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG  323 (552)
T ss_pred             hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence            45555666666554     5889999999988761     1125667888999998743     7788999999998764


Q ss_pred             CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHH
Q 006562          446 PSAGEAWKRRGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKS  518 (640)
Q Consensus       446 p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~  518 (640)
                        ++++.+.+|.++..-.   ++..|..+|..+....  +..+.+.++.+|..-    .+...|..++.++.+.+  ++.
T Consensus       324 --~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~  397 (552)
T KOG1550|consen  324 --NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPS  397 (552)
T ss_pred             --CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chh
Confidence              5677888898887765   5789999999988764  677888888888653    47899999999999887  445


Q ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHccCcccHH---HHH-HHHHHHHHh----cCHHHHHHHHHHHHHhCCCChHHHH
Q 006562          519 AYTYLGLALSSI-GEYKKAEEAHLKAIQLDRNFLE---AWG-HLTQFYQDL----ANSEKALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       519 ~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~---~~~-~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~  589 (640)
                      +.+.++..+... +.++.+...+.......-..+.   ++. .........    .+...+...+.++.  ...++.+..
T Consensus       398 A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~--~~g~~~a~~  475 (552)
T KOG1550|consen  398 AAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAA--AQGNADAIL  475 (552)
T ss_pred             hHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHH--hccCHHHHh
Confidence            555555554433 5655555444443332211110   000 000001111    12333444444432  223455555


Q ss_pred             HHHHHHHhc----CCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          590 LRGLLLHGL----GQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       590 ~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      .+|.+|..-    .+++.|...|.++....   ....+++|.++
T Consensus       476 ~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~  516 (552)
T KOG1550|consen  476 KLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMH  516 (552)
T ss_pred             hhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHH
Confidence            555555443    23556666665555444   45555555544

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=97.54  E-value=0.039  Score=55.49  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=98.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-C--c-----
Q 006562          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDK----ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-D--R-----  548 (640)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~--~-----  548 (640)
                      .....+...+.+..+.|.++.|...+.++....+    ..+.+.+..+.++...|+..+|+..++..+.. .  +     
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            3455677778888888888888888887776542    14566777778888888888888777776661 0  0     


Q ss_pred             --------------------------ccHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          549 --------------------------NFLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       549 --------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                                                ....++..+|......      +..++++..|..+++.+|....+|+..|..+.
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~  303 (352)
T PF02259_consen  224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND  303 (352)
T ss_pred             HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence                                      0134556667766666      88899999999999999999999998888765


Q ss_pred             hcCC-----------------HHHHHHHHHHhhccCCC
Q 006562          597 GLGQ-----------------HKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       597 ~~g~-----------------~~~A~~~~~~al~~~p~  617 (640)
                      ..=.                 ...|+..|-+++...+.
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  304 KLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             HHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            4311                 13477788888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.53  E-value=0.0059  Score=63.24  Aligned_cols=156  Identities=20%  Similarity=0.119  Sum_probs=114.2

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCC-CHHHHHH-----HHH-HH--H--HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          391 QVNEGKYASAISIFDQILKEDPM-YPEALIG-----RGT-AR--A--FQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~-----la~-~~--~--~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      .--.||-+.++..+.++.+...- .+-+-..     ... ..  .  ...+.+.|...+....+..|+..-..+..|+++
T Consensus       198 vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~  277 (468)
T PF10300_consen  198 VGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE  277 (468)
T ss_pred             cCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            33468999999999998773221 1211111     111 11  1  234678899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCH-
Q 006562          460 AALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEY-  533 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~-  533 (640)
                      ...|+.++|++.|++++.....-    .-.++.++.++..+.+|++|..++.+..+.+.-.. ...+..|.++...|+. 
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~  357 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREE  357 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccch
Confidence            99999999999999888533222    23678899999999999999999999998766543 3445568888888988 


Q ss_pred             ------HHHHHHHHHHHcc
Q 006562          534 ------KKAEEAHLKAIQL  546 (640)
Q Consensus       534 ------~~A~~~~~~a~~~  546 (640)
                            ++|...|.++-..
T Consensus       358 ~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  358 EAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             hhhhhHHHHHHHHHHHHHH
Confidence                  7777777776543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.49  E-value=0.0077  Score=62.36  Aligned_cols=117  Identities=19%  Similarity=0.052  Sum_probs=76.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHHH
Q 006562          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~  572 (640)
                      ...+.|.+.+.......|+..-.++..|+++...|+.++|+..|++++......    .-.++.++.++..+++|++|..
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            355667777777777777777777777777777777777777777666432222    2345667777777777777777


Q ss_pred             HHHHHHHhCCC-ChHHHHHHHHHHHhcCCH-------HHHHHHHHHhhc
Q 006562          573 CLQQVLYIDKR-FSKAYHLRGLLLHGLGQH-------KKAIKDLSSGLG  613 (640)
Q Consensus       573 ~~~~al~~~~~-~~~~~~~la~~~~~~g~~-------~~A~~~~~~al~  613 (640)
                      ++.+..+.+.- .....+..|.++...|+.       ++|...|.++-.
T Consensus       327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            77777765442 233445566677777776       666666666543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.49  E-value=0.16  Score=52.00  Aligned_cols=270  Identities=11%  Similarity=0.060  Sum_probs=179.7

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCCC
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGT-ARAFQRELEAAISDFTEAIQSNPS  447 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~  447 (640)
                      .+...+...|.-..+|-..|..-...|..+.+...|++++..-|.....|...-. +--..|+.+.-...|++|......
T Consensus        67 ~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~  146 (577)
T KOG1258|consen   67 VYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGL  146 (577)
T ss_pred             HHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhccc
Confidence            4556667788888889899999999999999999999999988877777765433 333456777777778877765543


Q ss_pred             c---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHH------------
Q 006562          448 A---GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----------------------DILHERG------------  490 (640)
Q Consensus       448 ~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------------~~~~~la------------  490 (640)
                      +   ...|-..-..-...+++..-...|++.++..-...                      +....+.            
T Consensus       147 dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~  226 (577)
T KOG1258|consen  147 DFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHS  226 (577)
T ss_pred             chhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccc
Confidence            2   22232222223344455555555555443211100                      0000000            


Q ss_pred             ------------------------------------HHHHhcCCHHHHHHHHHHHHHh-----CC---CcHHHHHHHHHH
Q 006562          491 ------------------------------------IVNFKFKDFNAAVEDLSACVKL-----DK---ENKSAYTYLGLA  526 (640)
Q Consensus       491 ------------------------------------~~~~~~~~~~~A~~~~~~al~~-----~~---~~~~~~~~la~~  526 (640)
                                                          .++.......+.+..++..+..     .|   .....|......
T Consensus       227 ~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf  306 (577)
T KOG1258|consen  227 QEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDF  306 (577)
T ss_pred             cChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhh
Confidence                                                0000111111111122222211     11   123456666777


Q ss_pred             HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHhcCCHHHHH
Q 006562          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-DKRFSKAYHLRGLLLHGLGQHKKAI  605 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g~~~~A~  605 (640)
                      -...|++....-.|++++--.....+.|...+......|+.+-|...+.++.+. .|..+..+..-+.+-...|++..|.
T Consensus       307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK  386 (577)
T ss_pred             hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence            778899999999999998888888899999999999999999998888887765 4677888888888999999999999


Q ss_pred             HHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       606 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ..+++..+..|+...+-...+....+.|+.+.+
T Consensus       387 ~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~  419 (577)
T KOG1258|consen  387 VILQRIESEYPGLVEVVLRKINWERRKGNLEDA  419 (577)
T ss_pred             HHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence            999999987798887777777777777776654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.47  E-value=0.0018  Score=55.93  Aligned_cols=91  Identities=22%  Similarity=0.148  Sum_probs=72.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccCchhH----HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-QAYILKGCAFSALGRK  119 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~-~a~~~~g~~y~~~g~~  119 (640)
                      .++..+++++|+..++.++....+...    -.++|+..+++|++++|+..++..-  ++.+. ..-.++|.++...|+.
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k  175 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDK  175 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCch
Confidence            457889999999999999977643333    4689999999999999999877633  23332 2577899999999999


Q ss_pred             HHHHHHHHHHHhhccCCh
Q 006562          120 EEALSVWEKGYEHALHQS  137 (640)
Q Consensus       120 ~~A~~~~~~al~~~~~~~  137 (640)
                      ++|...|++|++..++.+
T Consensus       176 ~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         176 QEARAAYEKALESDASPA  193 (207)
T ss_pred             HHHHHHHHHHHHccCChH
Confidence            999999999988764443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.01  Score=54.95  Aligned_cols=59  Identities=19%  Similarity=0.151  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK  474 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  474 (640)
                      +.-+..+.-....|++.+|...|..++...|++.++...++.+|...|+.+.|...+..
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence            33444455555566666666666666666666666666666666666666665555443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=97.42  E-value=0.098  Score=55.98  Aligned_cols=233  Identities=15%  Similarity=0.033  Sum_probs=155.4

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      .++...+..|.......++.+|..++.++...-+.         ........|.+....|+.++|+...+.++..-|.+.
T Consensus       413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~  492 (894)
T COG2909         413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA  492 (894)
T ss_pred             hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence            34677788899999999999999999988765433         134455678888899999999999999998887653


Q ss_pred             -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCH--HHHHHHHHHHH----Hh
Q 006562          450 -----EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDF--NAAVEDLSACV----KL  512 (640)
Q Consensus       450 -----~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~--~~A~~~~~~al----~~  512 (640)
                           .++..+|.+..-.|++++|..+...+.+.....      ..+....+.++..+|+.  .+....+...-    ..
T Consensus       493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q  572 (894)
T COG2909         493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ  572 (894)
T ss_pred             chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence                 456678889999999999999999888773322      22444557788888833  33333333222    22


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----Cccc--H-HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-
Q 006562          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL----DRNF--L-EAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-  584 (640)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~~--~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-  584 (640)
                      .|.........+.++...-+++.+..-....+..    .|..  . .....++.++...|++++|...+.......... 
T Consensus       573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~  652 (894)
T COG2909         573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ  652 (894)
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence            2333333333444443333366665555555543    2322  2 223588999999999999999998887653322 


Q ss_pred             hH------HHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          585 SK------AYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       585 ~~------~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      +.      ++.........+|++..|.....+.
T Consensus       653 ~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         653 YHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             CCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence            11      2222333455689999998888774

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.40  E-value=0.075  Score=53.37  Aligned_cols=215  Identities=11%  Similarity=0.000  Sum_probs=147.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcC---
Q 006562          402 SIFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNPS-AGEAWKRRGQARAALG---  463 (640)
Q Consensus       402 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~---  463 (640)
                      -.+++++..-+..+++|+..+..+...++              .+++..+|++++..--. +.-.++.++..-...-   
T Consensus       266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n  345 (656)
T KOG1914|consen  266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN  345 (656)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence            34667777777778888777666666555              67778888887754322 2333444443322222   


Q ss_pred             CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAHL  541 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~  541 (640)
                      +++..-..+++++.....++ -++..+...-.+..-...|...|.++-+.......++..-|.+ |...++..-|.+.|+
T Consensus       346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFe  425 (656)
T KOG1914|consen  346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFE  425 (656)
T ss_pred             hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHH
Confidence            36666777777776654443 3555666666667778888888888876544333444444433 445788999999999


Q ss_pred             HHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       542 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      -.+...++.+..-......+...++-..+..+|++++..  .+ .....|..+-..-..-|+...+++.-++-....|
T Consensus       426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence            999999999888888888888999999999999999876  33 2346777777777788888888877766655544

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.034  Score=50.43  Aligned_cols=219  Identities=16%  Similarity=0.176  Sum_probs=163.8

Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHH
Q 006562          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDL  472 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~  472 (640)
                      ..+|.++..+|+.++..+..+                 ..|+..-..++..+|.+-.+|...-.++..++ +..+-++++
T Consensus        39 te~fr~~m~YfRAI~~~~E~S-----------------~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l  101 (318)
T KOG0530|consen   39 TEDFRDVMDYFRAIIAKNEKS-----------------PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL  101 (318)
T ss_pred             chhHHHHHHHHHHHHhccccC-----------------HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence            356888888888777665544                 45667777888999999888887777766554 677889999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH
Q 006562          473 SKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL  551 (640)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~  551 (640)
                      ...++-+|++..+|...-.+....|++. .-++..+.++..+..+..+|...-.+....+.++.-+.+..+.++.+-.+-
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN  181 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN  181 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999999999999999988 889999999999999999999999999999999999999999998876666


Q ss_pred             HHHHHHHHHHHH-h-----cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-cC--CHHHHHHHHHHhh-ccCCCCHHH
Q 006562          552 EAWGHLTQFYQD-L-----ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG-LG--QHKKAIKDLSSGL-GIDPSNIEC  621 (640)
Q Consensus       552 ~~~~~la~~~~~-~-----g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~  621 (640)
                      .+|...-.+... .     -..+.-+.+..+.+...|.+..+|..+.-++.. .|  ...+-.......+ ......+..
T Consensus       182 SAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~l  261 (318)
T KOG0530|consen  182 SAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFL  261 (318)
T ss_pred             chhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhH
Confidence            666543222111 1     123455677888889999999999998888875 44  2333333333333 333344555


Q ss_pred             HHHHHHHH
Q 006562          622 LYLRASCY  629 (640)
Q Consensus       622 ~~~la~~~  629 (640)
                      +-.+..+|
T Consensus       262 la~l~d~~  269 (318)
T KOG0530|consen  262 LAFLLDLY  269 (318)
T ss_pred             HHHHHHHH
Confidence            55555555

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.0034  Score=58.61  Aligned_cols=101  Identities=18%  Similarity=0.257  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM----YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      +..+-.-|.-|+...+|..|+..|.+.++..-.    +...|.+.|-+.+..|+|..|+..+.+++..+|.+..+++.-|
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            455667899999999999999999999986544    3567889999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562          457 QARAALGESVEAIQDLSKALEFEPN  481 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~  481 (640)
                      .+++.+..+.+|..+++..+.++.+
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999999999999988776543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.31  E-value=0.0053  Score=48.01  Aligned_cols=90  Identities=19%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc---CchhH----------HHhHHHHHHhhhcHHHHHHHHHHHHHc-------CCC
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQS---YEIQD----------ICNRAFCYSQLELHKHVIRDCDKALQL-------DPT  101 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~---~~~~~----------~~~~A~~~~~~g~~~~Ai~~~~~al~~-------~P~  101 (640)
                      ...+-+..|-|.+|...|.+|.+..   |.-.+          +..++.++..+|+|++++...+++|..       ..+
T Consensus        15 ~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qd   94 (144)
T PF12968_consen   15 DAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQD   94 (144)
T ss_dssp             HHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTST
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccc
Confidence            3445688899999999999998876   32222          457888999999999999999999864       222


Q ss_pred             ----chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562          102 ----LLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (640)
Q Consensus       102 ----~~~a~~~~g~~y~~~g~~~~A~~~~~~al~  131 (640)
                          ++.+.+.+|.++..+|+.++|+..|+.+-+
T Consensus        95 eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   95 EGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence                566889999999999999999999999943

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.26  E-value=0.0097  Score=51.00  Aligned_cols=115  Identities=16%  Similarity=0.072  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA-AISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      +...|......|+...++..+.+++.+.....-.-..-       ..|-. ....+...      ...+...++..+...
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~   75 (146)
T PF03704_consen    9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEA   75 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            34456666777888899999998887654321000000       01111 11111111      123455667777777


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (640)
                      |++++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus        76 ~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   76 GDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            7888888888888888887777777777888888888777777777644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.25  E-value=0.00068  Score=41.13  Aligned_cols=31  Identities=39%  Similarity=0.486  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562          104 QAYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (640)
Q Consensus       104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~  134 (640)
                      ++|+.+|.+|..+|++++|+.+|+++++++|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5788899999999999999999999976665

...

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.22  E-value=0.22  Score=47.91  Aligned_cols=221  Identities=12%  Similarity=-0.028  Sum_probs=138.8

Q ss_pred             HHHcCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC----CC---c------
Q 006562          391 QVNEGKYASAISIFDQILKED----PMY----PEALIGRGTARAFQR-ELEAAISDFTEAIQSN----PS---A------  448 (640)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~----~~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~----p~---~------  448 (640)
                      ....|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.+.-    +.   .      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            457899999999999987654    222    356777888888888 9999999999998772    11   1      


Q ss_pred             -HHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Q 006562          449 -GEAWKRRGQARAALGESV---EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYL  523 (640)
Q Consensus       449 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l  523 (640)
                       ..++..++.+|...+.++   +|...++.+-...|+.+..+...-.+..+.++.+.+.+.+.+++..-+ .....-..+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             236777888998887654   456666666677788888876767777778999999999999988754 222222222


Q ss_pred             HHH-HHHcCCHHHHHHHHHHHHcc--CcccHHHHHHH---HHHHHHhc--C------HHHHHHHHHHHHHh--CCCCh--
Q 006562          524 GLA-LSSIGEYKKAEEAHLKAIQL--DRNFLEAWGHL---TQFYQDLA--N------SEKALECLQQVLYI--DKRFS--  585 (640)
Q Consensus       524 a~~-~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~al~~--~~~~~--  585 (640)
                      ..+ .........|...+...+..  .|.... |...   ..++...+  +      .+....++......  .|-.+  
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            222 11223445677777666543  222221 3222   22222222  1      22222333322111  12122  


Q ss_pred             -----HHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          586 -----KAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       586 -----~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                           ...+..|...++.++|++|..+|+-++
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence                 245667888999999999999999766

It is also involved in sporulation [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.22  E-value=0.088  Score=56.79  Aligned_cols=209  Identities=20%  Similarity=0.144  Sum_probs=103.5

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      .+..|..+|.+.++.|...+|++.|-++     ++|..+........+.|.|++-+.++.-+.+.... +.+-..+-.+|
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~Ay 1176 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAY 1176 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHH
Confidence            3556666666666666666666666543     34555666666666666666666666555443221 11112233334


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA  539 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~  539 (640)
                      .+.++..+-.+.+     ..|+...+ -..|.-++..|.|+.|.-.|..        ..-|..++..+..+|+|+.|...
T Consensus      1177 Akt~rl~elE~fi-----~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-----AGPNVANI-QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred             HHhchHHHHHHHh-----cCCCchhH-HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence            4444433322221     23333222 2345555555556555554433        23455566666666777766666


Q ss_pred             HHHHHccCc-------------------------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 006562          540 HLKAIQLDR-------------------------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (640)
Q Consensus       540 ~~~a~~~~~-------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (640)
                      .+++-....                         -..+-+-.+...|...|-+++-+..++.++.+...+...+..+|.+
T Consensus      1243 aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1243 ARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAIL 1322 (1666)
T ss_pred             hhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHH
Confidence            665532100                         0112223344445555666666666665555554444455555555


Q ss_pred             HHhcCCHHHHHHHHH
Q 006562          595 LHGLGQHKKAIKDLS  609 (640)
Q Consensus       595 ~~~~g~~~~A~~~~~  609 (640)
                      |.+- ++++-.++++
T Consensus      1323 Ysky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLK 1336 (1666)
T ss_pred             HHhc-CHHHHHHHHH
Confidence            4432 2344444443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.22  E-value=0.24  Score=48.25  Aligned_cols=167  Identities=20%  Similarity=0.067  Sum_probs=100.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----
Q 006562          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ----RELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----  461 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----  461 (640)
                      .....+++..|...+..+-..  ..+.....++.+|...    .+..+|..+|..+.  ...++.+.+.+|.+|..    
T Consensus        50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv  125 (292)
T COG0790          50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV  125 (292)
T ss_pred             cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence            344567778888888777652  2336667777777653    35777888887443  34566777778887776    


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----
Q 006562          462 LGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFK-------DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----  529 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----  529 (640)
                      ..+..+|..+|.++....... ..+...++.+|..-.       +...|...|.++-...  ++.+.+.+|.+|..    
T Consensus       126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv  203 (292)
T COG0790         126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGV  203 (292)
T ss_pred             ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCC
Confidence            347788888888877765433 233666666665531       2225666666665553  45556666655544    


Q ss_pred             cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      ..++.+|..+|.++.....  ....+.++ ++...|
T Consensus       204 ~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         204 PRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             CcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence            2356666666666665544  55555555 444444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.21  E-value=0.26  Score=48.60  Aligned_cols=94  Identities=9%  Similarity=-0.056  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHH------
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAW------  452 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~------  452 (640)
                      ..+-...+-.++.+.-...+...-+..|..+......|...++.+++.+|++.+..-...-...      ....      
T Consensus        49 ~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df  128 (549)
T PF07079_consen   49 GGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDF  128 (549)
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHH
Confidence            3334444445666666666666666778888888889999999999999999887765542221      1111      


Q ss_pred             ---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562          453 ---KRRGQARAALGESVEAIQDLSKALEF  478 (640)
Q Consensus       453 ---~~la~~~~~~~~~~~A~~~~~~al~~  478 (640)
                         ...+.++...|.+.++...+++.+..
T Consensus       129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~  157 (549)
T PF07079_consen  129 FLDEIEAHSLIETGRFSEGRAILNRIIER  157 (549)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence               22577888899999999999888764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=97.21  E-value=0.24  Score=48.19  Aligned_cols=186  Identities=22%  Similarity=0.152  Sum_probs=140.2

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----c
Q 006562          425 RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILHERGIVNFK----F  496 (640)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~  496 (640)
                      ....+++..+...+.++-..  .++.....++.+|..-    .+..+|..+|..+.  ...++.+.+.+|.+|..    .
T Consensus        51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~  126 (292)
T COG0790          51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVP  126 (292)
T ss_pred             ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcc
Confidence            34567788888888887662  2346777788887654    46888999999544  44567888999999987    4


Q ss_pred             CCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----h
Q 006562          497 KDFNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIG-------EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----L  564 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~  564 (640)
                      .+..+|..+|+++....... ....+.++.+|..-.       +...|...|.++-...  ++.+...+|.+|..    .
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~  204 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP  204 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence            59999999999999885443 344777888777642       2337888888887765  67888999988865    3


Q ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC---------------CHHHHHHHHHHhhccCCCCH
Q 006562          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG---------------QHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~~~  619 (640)
                      .++.+|..+|.++-+...  ....+.++ ++...|               +...|..++..+....+...
T Consensus       205 ~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  271 (292)
T COG0790         205 RDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNA  271 (292)
T ss_pred             cCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhH
Confidence            488999999999988766  78888888 666666               78888888888877665544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.12  E-value=0.00075  Score=40.95  Aligned_cols=33  Identities=27%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCc
Q 006562           70 QDICNRAFCYSQLELHKHVIRDCDKALQLDPTL  102 (640)
Q Consensus        70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~  102 (640)
                      ..|+.+|.+|..+|++++|+..++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            357899999999999999999999999999954

...

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=97.12  E-value=0.027  Score=55.95  Aligned_cols=143  Identities=17%  Similarity=0.036  Sum_probs=95.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------C------------CCc---HHHHHHHHHHH
Q 006562          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------------N------------PSA---GEAWKRRGQAR  459 (640)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~~  459 (640)
                      +.+|-+.+++..++.++..+|+...|.+.+++++-.              +            +.|   ..+.+......
T Consensus        34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L  113 (360)
T PF04910_consen   34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL  113 (360)
T ss_pred             HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555410              1            112   13455667778


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CcHHHHHHHHHHHHHcCC
Q 006562          460 AALGESVEAIQDLSKALEFEPN-SADI-LHERGIVNFKFKDFNAAVEDLSACVKLDK-----ENKSAYTYLGLALSSIGE  532 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~la~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~  532 (640)
                      .+.|-+..|.++.+-.+.++|. |+.. ...+-....+.++++--+..++.......     .-|...+..+.+++..++
T Consensus       114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~  193 (360)
T PF04910_consen  114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEK  193 (360)
T ss_pred             HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcC
Confidence            8899999999999999999998 6554 44444555677788777777776555211     134567778888888888


Q ss_pred             H---------------HHHHHHHHHHHccCcccH
Q 006562          533 Y---------------KKAEEAHLKAIQLDRNFL  551 (640)
Q Consensus       533 ~---------------~~A~~~~~~a~~~~~~~~  551 (640)
                      .               +.|...+.+|+...|...
T Consensus       194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl  227 (360)
T PF04910_consen  194 EESSQSSAQSGRSENSESADEALQKAILRFPWVL  227 (360)
T ss_pred             ccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence            8               899999999999877643

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.12  E-value=0.38  Score=48.61  Aligned_cols=138  Identities=13%  Similarity=-0.003  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH-HHHhcCHHHHHHHHHH
Q 006562          499 FNAAVEDLSACVKLDKEN-KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECLQQ  576 (640)
Q Consensus       499 ~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~  576 (640)
                      ++.....+.+++.....+ .-++..+-..-.+..-...|...|.++-+.......++..-|.+ |.-.++..-|..+|+-
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL  426 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL  426 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence            444555555555543322 23344444444555556677777777765433333444433333 4457899999999999


Q ss_pred             HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc--CCCC-HHHHHHHHHHHHHcCCcc
Q 006562          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--DPSN-IECLYLRASCYHAIGEYR  636 (640)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~  636 (640)
                      .+...++.+..-......+...|+-..|...|++++..  .|+. .++|..+-..-..-|+..
T Consensus       427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~  489 (656)
T KOG1914|consen  427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN  489 (656)
T ss_pred             HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence            99999999998888899999999999999999999876  4432 366666655555555544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.11  E-value=0.016  Score=49.67  Aligned_cols=112  Identities=22%  Similarity=0.133  Sum_probs=74.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~-A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (640)
                      |......|+...++..+.+++.+.....-.-..-       ..|-. ....+...      ...+...++..+...|+++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~   79 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLEAGDYE   79 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence            4445556777778888888776653321000000       11111 11122221      2346677888999999999


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (640)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  546 (640)
                      +|+..+++++..+|.+..++..+..++...|+..+|+..|+++...
T Consensus        80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.042  Score=47.73  Aligned_cols=116  Identities=19%  Similarity=0.126  Sum_probs=80.7

Q ss_pred             HHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006562          503 VEDLSACVKLDKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQ  576 (640)
Q Consensus       503 ~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~  576 (640)
                      .....+....+|.+.   .....++..+...|++++|+..++.++....+.   .-+-.+++++...+|.+++|+..+..
T Consensus        72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t  151 (207)
T COG2976          72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDT  151 (207)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            333444444444443   234557888888899999999998888653332   44567889999999999999888876


Q ss_pred             HHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562          577 VLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       577 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (640)
                      ..... -.+......|.++...|+.++|+..|+++++..++..
T Consensus       152 ~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         152 IKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             ccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence            53211 1133456789999999999999999999998875543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.09  E-value=0.00054  Score=64.16  Aligned_cols=95  Identities=27%  Similarity=0.384  Sum_probs=86.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  465 (640)
                      ..+...+..|.+++|++.|..++.++|.....+...+.++..++....|+..+..+++++|+....|...+.....+|+|
T Consensus       119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~  198 (377)
T KOG1308|consen  119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW  198 (377)
T ss_pred             HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 006562          466 VEAIQDLSKALEFEP  480 (640)
Q Consensus       466 ~~A~~~~~~al~~~p  480 (640)
                      .+|...+..+.+++-
T Consensus       199 e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  199 EEAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999988764

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.09  E-value=0.0023  Score=42.91  Aligned_cols=42  Identities=26%  Similarity=0.222  Sum_probs=34.2

Q ss_pred             HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 006562           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (640)
Q Consensus        71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~  112 (640)
                      ++|-+|.+++++|+|.+|...++.+|+.+|++..+..+...+
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            457789999999999999999999999999998887766544

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.08  E-value=0.00085  Score=41.25  Aligned_cols=29  Identities=24%  Similarity=0.285  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Q 006562          105 AYILKGCAFSALGRKEEALSVWEKGYEHA  133 (640)
Q Consensus       105 a~~~~g~~y~~~g~~~~A~~~~~~al~~~  133 (640)
                      ++..+|.+|..+|+|++|+.+|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            46788888888888888888888875443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=97.05  E-value=0.07  Score=52.43  Aligned_cols=114  Identities=15%  Similarity=0.084  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS---IGEYKKAEEAHLKAI  544 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~a~  544 (640)
                      -+.++++|++.+|.+...+..+-.+..+..+.++..+.+++++..+|+++..|..+-.....   .-.+......|.+++
T Consensus        50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l  129 (321)
T PF08424_consen   50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL  129 (321)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            34445555555555555544444444444455555555555555555554444433222221   122334444444443


Q ss_pred             ccC------------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562          545 QLD------------------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (640)
Q Consensus       545 ~~~------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  581 (640)
                      ..-                  .....++..+.....+.|-.+.|+..++-.++.+
T Consensus       130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN  184 (321)
T ss_pred             HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence            321                  0013344566666777788888888888877764

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=96.93  E-value=0.81  Score=49.36  Aligned_cols=255  Identities=16%  Similarity=0.078  Sum_probs=154.5

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----cHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPS-----AGEAW  452 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~  452 (640)
                      .-.+.+..-+..+...|...+|+...-.+  .+|.. .......+.-....++..    .+...++.-|.     ++...
T Consensus       345 ~~~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~ls----ll~~~~~~lP~~~l~~~P~Lv  418 (894)
T COG2909         345 RLKELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELS----LLLAWLKALPAELLASTPRLV  418 (894)
T ss_pred             chhHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchH----HHHHHHHhCCHHHHhhCchHH
Confidence            33677777788888888888888765433  12221 112222233333333332    23333333342     34556


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc-----HH
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN-----KS  518 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~  518 (640)
                      ...+.......++.+|.....++...-|..         .......|.+....|+++.|+...+.++..-|.+     ..
T Consensus       419 ll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~  498 (894)
T COG2909         419 LLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIV  498 (894)
T ss_pred             HHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhh
Confidence            667888888899999998888877654431         2345566788888999999999999999887765     35


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCcc----c--HHHHHHHHHHHHHhcCHHH--HHHHHHHH----HHhCCCChH
Q 006562          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN----F--LEAWGHLTQFYQDLANSEK--ALECLQQV----LYIDKRFSK  586 (640)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----~--~~~~~~la~~~~~~g~~~~--A~~~~~~a----l~~~~~~~~  586 (640)
                      ++..+|.+..-.|++++|..+...+.+....    .  ..+....+.++..+|+...  ....+...    +...|.+..
T Consensus       499 ~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f  578 (894)
T COG2909         499 ALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEF  578 (894)
T ss_pred             hhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchh
Confidence            6677888889999999999998888776322    2  2233455777788883322  22223222    222333333


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhcc----CCCCHH---HHHHHHHHHHHcCCccccc
Q 006562          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGI----DPSNIE---CLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~---~~~~la~~~~~~g~~~~Al  639 (640)
                      .....+.++...-+++.+.......++.    .|....   ....|+.++...|+.++|.
T Consensus       579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~  638 (894)
T COG2909         579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKAL  638 (894)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHH
Confidence            3333333333323355555555555443    343332   2247899999999998874

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.91  E-value=0.11  Score=51.17  Aligned_cols=144  Identities=13%  Similarity=0.077  Sum_probs=86.3

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562          404 FDQILKEDPMYPEALIGRGTARAFQR------------ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (640)
Q Consensus       404 ~~~~l~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  471 (640)
                      |++.++.+|.+..+|..+....-..-            -.+.-+.++++|++.+|++...+..+-.......+.++...-
T Consensus         8 l~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~   87 (321)
T PF08424_consen    8 LNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK   87 (321)
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            44444555555555554444332221            134456667777777777777666666666666666777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCC------------------cHHHHHHHHHHHHHc
Q 006562          472 LSKALEFEPNSADILHERGIVNFK---FKDFNAAVEDLSACVKLDKE------------------NKSAYTYLGLALSSI  530 (640)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~------------------~~~~~~~la~~~~~~  530 (640)
                      +++++..+|++...|..+-.....   .-.++.....|.+++..-..                  ...++..++......
T Consensus        88 we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~a  167 (321)
T PF08424_consen   88 WEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQA  167 (321)
T ss_pred             HHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHC
Confidence            777777777776666554443333   22455666666665543110                  123455567777788


Q ss_pred             CCHHHHHHHHHHHHccC
Q 006562          531 GEYKKAEEAHLKAIQLD  547 (640)
Q Consensus       531 g~~~~A~~~~~~a~~~~  547 (640)
                      |..+.|+..++-.++.+
T Consensus       168 G~~E~Ava~~Qa~lE~n  184 (321)
T PF08424_consen  168 GYTERAVALWQALLEFN  184 (321)
T ss_pred             CchHHHHHHHHHHHHHH
Confidence            88889998888888765

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.72  E-value=0.22  Score=53.13  Aligned_cols=175  Identities=21%  Similarity=0.078  Sum_probs=130.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcC--
Q 006562          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQ-----RELEAAISDFTEAIQS-----NPSAGEAWKRRGQARAALG--  463 (640)
Q Consensus       396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~--  463 (640)
                      +...|..+++.+...  .+..+...+|.+|..-     .|.+.|+.+++.+...     .-.++.+.+.+|.+|....  
T Consensus       227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~  304 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV  304 (552)
T ss_pred             hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence            356788888877654  4677888888888765     5899999999999771     1124557788999998843  


Q ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCH
Q 006562          464 ---ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEY  533 (640)
Q Consensus       464 ---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~  533 (640)
                         ++..|+.++.++....  ++.+.+.+|.++....   +...|.++|..+...  .+..+.+.++.+|..    ..+.
T Consensus       305 ~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~  380 (552)
T KOG1550|consen  305 EKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNL  380 (552)
T ss_pred             ccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCH
Confidence               6788999999998875  4667888898887765   678999999998876  467888888888876    3578


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVL  578 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al  578 (640)
                      ..|..++.++.+..  .+.+...++.++... +.++.+...+...-
T Consensus       381 ~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a  424 (552)
T KOG1550|consen  381 ELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLA  424 (552)
T ss_pred             HHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHH
Confidence            99999999999887  455555555554433 66666665555443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.68  E-value=1.1  Score=47.11  Aligned_cols=50  Identities=10%  Similarity=-0.078  Sum_probs=40.7

Q ss_pred             HHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562           79 YSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (640)
Q Consensus        79 ~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~a  129 (640)
                      -+..|+|+.|...++ .+...|+-...|.+++..-+.-|+.--|.++|-..
T Consensus       454 aid~~df~ra~afle-s~~~~~da~amw~~laelale~~nl~iaercfaai  503 (1636)
T KOG3616|consen  454 AIDDGDFDRATAFLE-SLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAI  503 (1636)
T ss_pred             ccccCchHHHHHHHH-hhccCccHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            356688888877554 57888988889999999999999988888888765

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.67  E-value=0.48  Score=46.72  Aligned_cols=129  Identities=10%  Similarity=-0.021  Sum_probs=81.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  568 (640)
                      ...-.+..-.+.|...|.++-+..-....++..-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-.
T Consensus       404 ~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~  483 (660)
T COG5107         404 LNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEE  483 (660)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHH
Confidence            3333444556667777776655432333333333333 345778888888888888888887766666666677778888


Q ss_pred             HHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          569 KALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       569 ~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      .|...|++++..-...  ...|-.+-..-..-|+...+...-++...+.|..
T Consensus       484 naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe  535 (660)
T COG5107         484 NARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE  535 (660)
T ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence            8888888776543322  3455555555666777777777777766666653

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=96.63  E-value=0.13  Score=51.21  Aligned_cols=142  Identities=15%  Similarity=0.035  Sum_probs=107.5

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CCH---HHHHHHHH
Q 006562          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------------EP------------NSA---DILHERGI  491 (640)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~~---~~~~~la~  491 (640)
                      .+..+|-+.+++..++.++..+|+...|.+.+++++-.              ++            .|.   .+.+....
T Consensus        32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~  111 (360)
T PF04910_consen   32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ  111 (360)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence            35678999999999999999999999999999988632              11            111   24556677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCC-cHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCc-----ccHHHHHHHHHHHHHh
Q 006562          492 VNFKFKDFNAAVEDLSACVKLDKE-NKS-AYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHLTQFYQDL  564 (640)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~-~~~-~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~  564 (640)
                      .+.+.|-+..|.++.+-.+.++|. |+- +.+.+-....+.++++--+..++.......     ..|..-+..+.++...
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l  191 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRL  191 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHh
Confidence            788899999999999999999998 764 444455555667888877777776554211     1345667778888888


Q ss_pred             cCH---------------HHHHHHHHHHHHhCC
Q 006562          565 ANS---------------EKALECLQQVLYIDK  582 (640)
Q Consensus       565 g~~---------------~~A~~~~~~al~~~~  582 (640)
                      ++.               +.|...+.+|+...|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  192 EKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             cCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            887               899999999987765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.59  E-value=0.0043  Score=37.14  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=19.6

Q ss_pred             HHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (640)
Q Consensus        72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~  101 (640)
                      ++++|.|+.++|++++|+..++++++..|+
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            456666666666666666666666666665

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.58  E-value=0.013  Score=58.89  Aligned_cols=98  Identities=17%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             hcCCHHHHHHHHHHHHcccC--chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 006562           48 SLRNWSKAIRILDSLLAQSY--EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSV  125 (640)
Q Consensus        48 ~~~~y~~Ai~~y~~ai~~~~--~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~  125 (640)
                      ..||-..|+.|+..|+...|  ......++|+..++-|-.-.|-..+.++|.+....+-.++-+|.+|+.+.+.+.|+..
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            45999999999999999884  4455899999999999999999999999999977788999999999999999999999


Q ss_pred             HHHHHhhccCChHHHHHHHh
Q 006562          126 WEKGYEHALHQSADLKQFLE  145 (640)
Q Consensus       126 ~~~al~~~~~~~~~~~~~~~  145 (640)
                      |++|++++|..+.....+..
T Consensus       699 ~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  699 FRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             HHHHHhcCCCChhhHHHHHH
Confidence            99999999999876655543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.57  E-value=0.0056  Score=56.46  Aligned_cols=69  Identities=20%  Similarity=0.025  Sum_probs=62.8

Q ss_pred             HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 006562           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK  141 (640)
Q Consensus        73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  141 (640)
                      .+.|.-..+.|+.++|...++.|+.++|++++++..+|.....-++..+|-.+|-+|+.++|..++++.
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv  188 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV  188 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence            455556778899999999999999999999999999999999999999999999999999999987753

>PRK10941 hypothetical protein; Provisional

Probab=96.56  E-value=0.02  Score=53.90  Aligned_cols=69  Identities=16%  Similarity=0.069  Sum_probs=64.2

Q ss_pred             HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHH
Q 006562           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLK  141 (640)
Q Consensus        73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  141 (640)
                      .|+-.+|.+.++++.|+..++..+.++|+++.-+--+|.+|.++|.+..|...++.-++..|+.|....
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            577789999999999999999999999999988888999999999999999999999999999987643

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.56  E-value=0.33  Score=47.80  Aligned_cols=214  Identities=8%  Similarity=-0.044  Sum_probs=148.2

Q ss_pred             HHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 006562          368 FCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS---  444 (640)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---  444 (640)
                      +....+...-+..++.|+.-.......++-+.|+....+++...|.   ..+.++.+|....+-+....+|+++.+.   
T Consensus       289 y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r  365 (660)
T COG5107         289 YIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR  365 (660)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence            4455566667777889998888889999999999988888766655   6677888887777777666666665421   


Q ss_pred             ---------------CCC-cHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHhc
Q 006562          445 ---------------NPS-AGE-----------AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI-VNFKF  496 (640)
Q Consensus       445 ---------------~p~-~~~-----------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~  496 (640)
                                     +|. .++           +|..+-..-.+..-.+.|...|-++-+..-...+++..-|. -+...
T Consensus       366 ~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~  445 (660)
T COG5107         366 KYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT  445 (660)
T ss_pred             HHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc
Confidence                           110 011           22222333334455677777777776654233334433333 24568


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHH
Q 006562          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECL  574 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~  574 (640)
                      |++..|...|+-.+...|+++......-..+...++-..|...|+.++..-...  ...|-.+...-..-|+...+...=
T Consensus       446 ~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe  525 (660)
T COG5107         446 GDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLE  525 (660)
T ss_pred             CCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHH
Confidence            999999999999999999999888888888899999999999999888654333  455555555566668877777777


Q ss_pred             HHHHHhCCCC
Q 006562          575 QQVLYIDKRF  584 (640)
Q Consensus       575 ~~al~~~~~~  584 (640)
                      ++.....|..
T Consensus       526 ~rf~e~~pQe  535 (660)
T COG5107         526 ERFRELVPQE  535 (660)
T ss_pred             HHHHHHcCcH
Confidence            7766666643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.50  E-value=0.058  Score=45.64  Aligned_cols=86  Identities=17%  Similarity=0.119  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..++.........++.+++..++..+.-+.|..+..-..-|.++...|+|.+|+..++.+....|..+.+-..++.|+.
T Consensus        10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~   89 (160)
T PF09613_consen   10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY   89 (160)
T ss_pred             HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            44556666677777888888888888888888888888888888888888888888888888777878877778888887


Q ss_pred             HcCCHH
Q 006562          461 ALGESV  466 (640)
Q Consensus       461 ~~~~~~  466 (640)
                      ..|+..
T Consensus        90 ~~~D~~   95 (160)
T PF09613_consen   90 ALGDPS   95 (160)
T ss_pred             HcCChH
Confidence            777654

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=3.1  Score=50.10  Aligned_cols=90  Identities=14%  Similarity=0.093  Sum_probs=65.8

Q ss_pred             HhcCCHHHHHHHHHHH----HcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562           47 CSLRNWSKAIRILDSL----LAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (640)
Q Consensus        47 ~~~~~y~~Ai~~y~~a----i~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A  122 (640)
                      |+.|.|.+|+-++++-    +..+.....+...-.+|..+++++...-.... ...+|+.    ...-..+...|++..|
T Consensus      1394 frc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl----~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1394 FRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSL----YQQILEHEASGNWADA 1468 (2382)
T ss_pred             HhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccH----HHHHHHHHhhccHHHH
Confidence            8899999999999993    22222233366666799999999887766554 5556653    3344557889999999


Q ss_pred             HHHHHHHHhhccCChHHHH
Q 006562          123 LSVWEKGYEHALHQSADLK  141 (640)
Q Consensus       123 ~~~~~~al~~~~~~~~~~~  141 (640)
                      ..+|++++..+|....++.
T Consensus      1469 ~~Cye~~~q~~p~~~~~~~ 1487 (2382)
T KOG0890|consen 1469 AACYERLIQKDPDKEKHHS 1487 (2382)
T ss_pred             HHHHHHhhcCCCccccchh
Confidence            9999999988887654443

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=96.48  E-value=0.0086  Score=57.74  Aligned_cols=86  Identities=14%  Similarity=0.212  Sum_probs=74.4

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccCchhH-----------H--------HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQSYEIQD-----------I--------CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA  105 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~~~~~-----------~--------~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a  105 (640)
                      ..|++|+|..|+.-|..|+++.....+           .        -.+..||+++++.+-|+...-++|-++|.++.-
T Consensus       185 ~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frn  264 (569)
T PF15015_consen  185 SCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRN  264 (569)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhH
Confidence            668999999999999988876521111           1        267889999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          106 YILKGCAFSALGRKEEALSVWEKGY  130 (640)
Q Consensus       106 ~~~~g~~y~~~g~~~~A~~~~~~al  130 (640)
                      |++.|.++..+.+|.+|.+.+.-|.
T Consensus       265 HLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  265 HLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888884

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.41  E-value=0.007  Score=36.19  Aligned_cols=29  Identities=21%  Similarity=0.208  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSNP  446 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (640)
                      ++.+|.++...|++++|+..|+++++..|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            33344444444444444444444444433

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.21  Score=50.56  Aligned_cols=66  Identities=20%  Similarity=0.127  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---C----CChHHHHHHHHHHHhcCC-HHHHHHHHHHhhccCCC
Q 006562          552 EAWGHLTQFYQDLANSEKALECLQQVLYID---K----RFSKAYHLRGLLLHGLGQ-HKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---~----~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~  617 (640)
                      --+..+|.++..+|+...|..+|..+++..   .    -.|.+++.+|.++..+|. ..++..++.+|-....+
T Consensus       450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d  523 (546)
T KOG3783|consen  450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD  523 (546)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence            345678999999999999999999887432   1    236789999999999998 99999999999887644

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.30  E-value=0.0066  Score=37.25  Aligned_cols=27  Identities=26%  Similarity=0.223  Sum_probs=21.3

Q ss_pred             HHhHHHHHHhhhcHHHHHHHHHHHHHc
Q 006562           72 ICNRAFCYSQLELHKHVIRDCDKALQL   98 (640)
Q Consensus        72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~   98 (640)
                      +.++|.+|.++|+|++|+..++++|.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678888999999999999999985544

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.0071  Score=57.23  Aligned_cols=102  Identities=17%  Similarity=0.048  Sum_probs=86.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc-----------Cc---------hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQS-----------YE---------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-----------~~---------~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~  101 (640)
                      .....|++++|+.|..-|.+++.--           ++         ...+.+.+.|-++++.+..|+..+..++..+|.
T Consensus       228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s  307 (372)
T KOG0546|consen  228 IGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERS  307 (372)
T ss_pred             cchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChh
Confidence            3447899999999999999986321           11         111568899999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHH
Q 006562          102 LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQF  143 (640)
Q Consensus       102 ~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  143 (640)
                      ..++|+++|..+..+.++++|+..++.+....|++..-...+
T Consensus       308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~  349 (372)
T KOG0546|consen  308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL  349 (372)
T ss_pred             hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence            999999999999999999999999999998888886554443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.26  E-value=2.3  Score=46.21  Aligned_cols=271  Identities=12%  Similarity=0.051  Sum_probs=173.1

Q ss_pred             HHHhhhhccCc----ccHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHH
Q 006562          368 FCVTRISKSKS----ISVDFRLSRGIAQV-NEGKYASAISIFDQILKEDPM--Y----PEALIGRGTARAFQRELEAAIS  436 (640)
Q Consensus       368 ~~~~~~~~~~~----~~~~~~~~~a~~~~-~~g~~~~A~~~~~~~l~~~~~--~----~~~~~~la~~~~~~g~~~~A~~  436 (640)
                      .|+..+....+    .++..++.+|.+++ ...+++.|..++++++.+...  .    ..+.+.++.++.+.+... |..
T Consensus        42 ~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~  120 (608)
T PF10345_consen   42 KCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALK  120 (608)
T ss_pred             HHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHH
Confidence            35555553332    34567889999888 678999999999999876643  2    234566788888887777 999


Q ss_pred             HHHHHHHhCCC---cHH-HHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHhcCCHHHHHH
Q 006562          437 DFTEAIQSNPS---AGE-AWKRR--GQARAALGESVEAIQDLSKALEFE--PNSADI----LHERGIVNFKFKDFNAAVE  504 (640)
Q Consensus       437 ~~~~al~~~p~---~~~-~~~~l--a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~~~~~~A~~  504 (640)
                      .+++.++....   ... ..+.+  .......+++..|++.++......  +.++.+    ....+.+....+..+++++
T Consensus       121 ~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~  200 (608)
T PF10345_consen  121 NLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLE  200 (608)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence            99999876544   222 11222  233333479999999999988876  344432    3334566677787888888


Q ss_pred             HHHHHHHhCCC----------cHHHHHHHH--HHHHHcCCHHHHHHHHHHH---Hcc---Cc---c--------------
Q 006562          505 DLSACVKLDKE----------NKSAYTYLG--LALSSIGEYKKAEEAHLKA---IQL---DR---N--------------  549 (640)
Q Consensus       505 ~~~~al~~~~~----------~~~~~~~la--~~~~~~g~~~~A~~~~~~a---~~~---~~---~--------------  549 (640)
                      .++++......          ...++..+-  .++...|+++.+...+++.   +..   .+   .              
T Consensus       201 ~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~  280 (608)
T PF10345_consen  201 LLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEG  280 (608)
T ss_pred             HHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccc
Confidence            88887543211          123343333  3445567766666554432   211   11   0              


Q ss_pred             --------c-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----------C----------------
Q 006562          550 --------F-----------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----------F----------------  584 (640)
Q Consensus       550 --------~-----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----------~----------------  584 (640)
                              .           .-+|..-|......|..++|.+++.++++.-.+          .                
T Consensus       281 ~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~  360 (608)
T PF10345_consen  281 SSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQ  360 (608)
T ss_pred             cccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHH
Confidence                    0           112333455566667777888888887653111          0                


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhccC---CC------CHHHHHHHHHHHHHcCCccccc
Q 006562          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID---PS------NIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ....+..+.+..-.+++..|...++.+....   |.      .+..++..|..+...|+.+.|+
T Consensus       361 ~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~  424 (608)
T PF10345_consen  361 CYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAAL  424 (608)
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHH
Confidence            0134556777888999999999988776542   22      3577888999999999999885

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>smart00028 TPR Tetratricopeptide repeats

Probab=96.22  E-value=0.0091  Score=35.21  Aligned_cols=31  Identities=29%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             HHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562           71 DICNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (640)
Q Consensus        71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~  101 (640)
                      .+.++|.++..+|++++|+..++++++.+|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            3556666666666666666666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.17  E-value=0.42  Score=43.71  Aligned_cols=188  Identities=10%  Similarity=-0.015  Sum_probs=106.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCcH-HHHHHHHHHHHHcC
Q 006562          394 EGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQSN-----PSAG-EAWKRRGQARAALG  463 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~-~~~~~la~~~~~~~  463 (640)
                      ..+.++|+.-|++++++.+...    .++-.+..+++.+|+|++-.+.|.+.+..-     .+.. .....+-..-....
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            4589999999999999987753    466778889999999999999999887431     1111 11111111111222


Q ss_pred             CHHHHHHHHHHHHHh--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------------HHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEF--EPNSAD----ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------------KSAYTYLGL  525 (640)
Q Consensus       464 ~~~~A~~~~~~al~~--~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~la~  525 (640)
                      +.+--...|+..+..  +..+..    ....+|.+|+..++|.+-.+.+++.-......            .++|..-..
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            333333333332221  111222    23357777777777777766666655432211            133444455


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCccc--HHH----HHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562          526 ALSSIGEYKKAEEAHLKAIQLDRNF--LEA----WGHLTQFYQDLANSEKALECLQQVLYID  581 (640)
Q Consensus       526 ~~~~~g~~~~A~~~~~~a~~~~~~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~  581 (640)
                      .|..+.+-.+-...|++++.+...-  |..    .-.=|..+.+.|++++|-.-|-.+++..
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            6666666666666777776653221  221    1223445666677777776666666543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.53  Score=51.24  Aligned_cols=219  Identities=16%  Similarity=0.113  Sum_probs=131.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (640)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  466 (640)
                      .|.+....+-|++|..+|.+--    -+..+..   ......+..+.|.++.+++     +.+.+|..+|.+..+.|...
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~----~n~~A~~---VLie~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFD----MNVSAIQ---VLIENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhc----ccHHHHH---HHHHHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence            3566677778888888887531    1122211   1122334555555555543     34556666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC----------------------------CCcHH
Q 006562          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD----------------------------KENKS  518 (640)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~----------------------------~~~~~  518 (640)
                      +|++.|-++     +++..+.....+..+.|.|++-++++.-+-+..                            |+.. 
T Consensus      1122 dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A- 1195 (1666)
T KOG0985|consen 1122 DAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVA- 1195 (1666)
T ss_pred             HHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCch-
Confidence            666665443     344555555555556666666666555544332                            2221 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC----------------
Q 006562          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----------------  582 (640)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------  582 (640)
                      -....|.-++..|.|+.|.-+|..        ..-|..++..+..+|+|..|....+++-....                
T Consensus      1196 ~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred             hHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhH
Confidence            223355556666666666655543        44567788889999999999988877632210                


Q ss_pred             ---------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 006562          583 ---------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (640)
Q Consensus       583 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (640)
                               -+++-+-.+...|...|-+++-+..++.++-+..-+...+..||.+|.+
T Consensus      1268 AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1268 AQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence                     1223355677788899999999999999988766655555556665543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.14  E-value=0.094  Score=41.12  Aligned_cols=103  Identities=16%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          387 RGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      +|..++..|++-+|+++.+..+...+++.   ..+...|.++..+.            ......+....+.+        
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA------------~~ten~d~k~~yLl--------   61 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLA------------KKTENPDVKFRYLL--------   61 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHH------------HhccCchHHHHHHH--------
Confidence            35667888888888888888887776655   33444455544332            11111111222222        


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL  512 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  512 (640)
                         .+++.+.++..+.|..+..++.+|.-+-....|+++..-.++++..
T Consensus        62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence               2455666666666666666666666555555666666666666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.14  E-value=0.13  Score=43.63  Aligned_cols=77  Identities=18%  Similarity=0.053  Sum_probs=38.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      ..+-...++.+++...+...--+.|..+..-..-|.++...|+|.+|+..|+.+....|..+.+--.++.|+..+|+
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            33334444555555555544445555555555555555555555555555555544445445444455555544444

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=96.13  E-value=1.6  Score=52.47  Aligned_cols=83  Identities=12%  Similarity=0.051  Sum_probs=61.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHcCCH
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC-AFSALGRK  119 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~-~y~~~g~~  119 (640)
                      ..-.+-..|+|+.|..||++++...|+ ...+...-.+-+..|.+...+...+-...-.++..+-++..|. +-..++++
T Consensus      1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred             HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence            334446779999999999999999965 5556666678888999999999888877777777776666654 44666666


Q ss_pred             HHHHH
Q 006562          120 EEALS  124 (640)
Q Consensus       120 ~~A~~  124 (640)
                      +.-..
T Consensus      1535 D~~e~ 1539 (2382)
T KOG0890|consen 1535 DLLES 1539 (2382)
T ss_pred             hhhhh
Confidence            65543

>PRK10941 hypothetical protein; Provisional

Probab=96.11  E-value=0.066  Score=50.49  Aligned_cols=76  Identities=22%  Similarity=0.168  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562          553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (640)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (640)
                      ...++-.+|...++++.|+.+.+..+...|+++.-+...|.+|.++|.+..|...++..++..|+++.+-....++
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            3445666777788888888888888888888888888888888888888888888888888888877665544444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=96.04  E-value=3.5  Score=46.31  Aligned_cols=93  Identities=8%  Similarity=0.044  Sum_probs=75.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHcccCch----hHHHhHHHHHHhh-------hcHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQSYEI----QDICNRAFCYSQL-------ELHKHVIRDCDKALQLDPTLLQAYILKGCAF  113 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~~~~----~~~~~~A~~~~~~-------g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y  113 (640)
                      .|+..+.|++|+..|.+....-|.-    .+.+..|.+.+.+       ..+++|+..+++ |--.|.-+--|...|.+|
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  562 (932)
T PRK13184        484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY-LHGGVGAPLEYLGKALVY  562 (932)
T ss_pred             HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH-hcCCCCCchHHHhHHHHH
Confidence            4678899999999999998876433    4456666666554       368888888887 455787888899999999


Q ss_pred             HHcCCHHHHHHHHHHHHhhccCChH
Q 006562          114 SALGRKEEALSVWEKGYEHALHQSA  138 (640)
Q Consensus       114 ~~~g~~~~A~~~~~~al~~~~~~~~  138 (640)
                      ..+|+++|-+++|..|++--|.+|.
T Consensus       563 ~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        563 QRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            9999999999999999988888874

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.03  E-value=0.039  Score=37.08  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI  419 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~  419 (640)
                      .++.+|..++..|+|.+|..+.+.+++.+|++..+..
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            3445555555555555555555555555555554443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.93  E-value=0.16  Score=50.77  Aligned_cols=95  Identities=9%  Similarity=0.027  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 006562          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACV  510 (640)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al  510 (640)
                      ..-...|+++....+.+...|........+.+.+.+--..|.+++..+|++++.|..-|.-.+..+. .+.|...+.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            4456678888888888888888887777777778888888888888888888888888877777665 888888888888


Q ss_pred             HhCCCcHHHHHHHHHH
Q 006562          511 KLDKENKSAYTYLGLA  526 (640)
Q Consensus       511 ~~~~~~~~~~~~la~~  526 (640)
                      +.+|+++..|...-..
T Consensus       168 R~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  168 RFNPDSPKLWKEYFRM  183 (568)
T ss_pred             hcCCCChHHHHHHHHH
Confidence            8888888777654433

>smart00028 TPR Tetratricopeptide repeats

Probab=95.89  E-value=0.014  Score=34.33  Aligned_cols=32  Identities=34%  Similarity=0.416  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562          104 QAYILKGCAFSALGRKEEALSVWEKGYEHALH  135 (640)
Q Consensus       104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~  135 (640)
                      .+++.+|.+|..+|++++|+..|++++++.|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            57899999999999999999999999876654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.82  E-value=0.043  Score=50.87  Aligned_cols=72  Identities=19%  Similarity=0.077  Sum_probs=52.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (640)
                      ..+.-....|+.++|...|+.++.+.|.+++++..+|.+....++.-+|-.+|-+++.+.|.+.+++.+.+.
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344445566777777777777777777777777777777777777777777777777777777777666554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.80  E-value=1.3  Score=46.17  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=81.1

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (640)
                      +...++.|..+|...+..-.++.|...|-++-.. |.-         ..--...|.+-..-|++++|.+.|-.+-..+  
T Consensus       688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            3445788888898888888888887777654321 110         0001233444445577888877775542211  


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACV---------------  510 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al---------------  510 (640)
                            ..-.++...|+|-...+.++..-.-..  ....++..+|..+..+..|++|.++|...-               
T Consensus       765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f  838 (1189)
T KOG2041|consen  765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELF  838 (1189)
T ss_pred             ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhh
Confidence                  112334445555554444433211111  013356666666666666666666665431               


Q ss_pred             -------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          511 -------KLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (640)
Q Consensus       511 -------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (640)
                             ..-|++...+-.+|..+...|.-++|.+.|-
T Consensus       839 ~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  839 GELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             hhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHH
Confidence                   2224444445555555555555555555544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.79  E-value=0.14  Score=39.19  Aligned_cols=64  Identities=20%  Similarity=0.199  Sum_probs=36.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q 006562          401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGE  464 (640)
Q Consensus       401 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~  464 (640)
                      +..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.++..  ..+...+-.++..+|.
T Consensus         8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            445566666677777777777777777777777777777766666543  3344444444444443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.77  E-value=0.2  Score=49.63  Aligned_cols=126  Identities=15%  Similarity=0.114  Sum_probs=103.3

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ  470 (640)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~  470 (640)
                      .+..|+.-.|-.-...+++..|..|......+.+....|+|+.+...+..+-..-.....+...+-+....+|++++|..
T Consensus       299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            45678898898888999999999999999999999999999999888876655544444555666777888999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       471 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      ...-.+...-+++++...-+-.....|-++++..++++.+.++|..
T Consensus       379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            9888887777777777777777778888999999999999988754

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.75  E-value=2  Score=41.28  Aligned_cols=214  Identities=15%  Similarity=0.068  Sum_probs=131.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhC----CCc----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----CC---C------
Q 006562          425 RAFQRELEAAISDFTEAIQSN----PSA----GEAWKRRGQARAALG-ESVEAIQDLSKALEFE----PN---S------  482 (640)
Q Consensus       425 ~~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~----p~---~------  482 (640)
                      .+..|+++.|..++.++-...    |+.    ...++..|......+ +++.|..+++++.++-    +.   .      
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            356899999999999986654    322    346777888888899 9999999999998872    21   1      


Q ss_pred             -HHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHH-HH
Q 006562          483 -ADILHERGIVNFKFKDFN---AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG-HL  557 (640)
Q Consensus       483 -~~~~~~la~~~~~~~~~~---~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-~l  557 (640)
                       ..++..++.++...+.++   +|...++.+-...|+.+..+...-.+....++.+.+.+.+.+++...+-....+. .+
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l  162 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHH
Confidence             236778888998887654   5666666666677887887766666666689999999999999886542211111 12


Q ss_pred             HHH-HHHhcCHHHHHHHHHHHHHh--CCCChHHHHHH---HHHHHhcC--C------HHHHHHHHHHhhc--cCCCCH--
Q 006562          558 TQF-YQDLANSEKALECLQQVLYI--DKRFSKAYHLR---GLLLHGLG--Q------HKKAIKDLSSGLG--IDPSNI--  619 (640)
Q Consensus       558 a~~-~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l---a~~~~~~g--~------~~~A~~~~~~al~--~~p~~~--  619 (640)
                      ..+ .........|...+...+..  .|.... +...   ..++...+  +      .+.....+....+  ..|-..  
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            211 11223345666666666543  332221 2222   22222222  1      2222233332211  122222  


Q ss_pred             -----HHHHHHHHHHHHcCCccccc
Q 006562          620 -----ECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       620 -----~~~~~la~~~~~~g~~~~Al  639 (640)
                           ..+++.|...++.++|.+|+
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~  266 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAI  266 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHH
Confidence                 45577888899999999885

It is also involved in sporulation [].

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.67  E-value=2.6  Score=41.96  Aligned_cols=120  Identities=17%  Similarity=0.087  Sum_probs=77.3

Q ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHc---------cCc---ccHHH
Q 006562          489 RGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE--AHLKAIQ---------LDR---NFLEA  553 (640)
Q Consensus       489 la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~a~~---------~~~---~~~~~  553 (640)
                      -|.-++..|. -++|+..++.++...|.+.......-..  -...|.+|+.  .+.+.+.         +.|   .+.+.
T Consensus       385 ~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f--vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei  462 (549)
T PF07079_consen  385 GAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF--VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI  462 (549)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence            3555666676 7788888888888877775332211111  1111222221  1111111         111   12333


Q ss_pred             HHHH--HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          554 WGHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       554 ~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      -+.+  |..++..|+|.++.-+-.-..+..| ++.++..+|.+.....+|++|..++...
T Consensus       463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            3334  4456789999999999998899999 8999999999999999999999999864

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.66  E-value=0.017  Score=51.12  Aligned_cols=60  Identities=15%  Similarity=0.167  Sum_probs=55.2

Q ss_pred             HHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562           77 FCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (640)
Q Consensus        77 ~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~  136 (640)
                      ....+.|+.+.|...+.+++.+-|.+...|+++|....+-|+++.|.+.|++.++++|+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            345677899999999999999999999999999999999999999999999999998865

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.65  E-value=0.19  Score=38.45  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=22.5

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      ..+++.+..+|++..+.+.+|..+...|++++|+..+-.++..++.
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~   54 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD   54 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            3444455555555555555555555555555555555555555443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.56  E-value=0.068  Score=52.72  Aligned_cols=125  Identities=14%  Similarity=0.099  Sum_probs=107.0

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006562          426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED  505 (640)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  505 (640)
                      +..|+.-.|-.-...++...|.+|......+.+...+|.|+.+...+..+-..-.....+...+-......|++++|...
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~  379 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST  379 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence            45689999999999999999999999999999999999999999988777666555556666777888899999999999


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc
Q 006562          506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF  550 (640)
Q Consensus       506 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~  550 (640)
                      ..-.+...-.++++...-+.....+|-++++...+.+.+.++|..
T Consensus       380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~  424 (831)
T PRK15180        380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET  424 (831)
T ss_pred             HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence            998888877788887777777778899999999999999988754

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.50  E-value=0.23  Score=41.27  Aligned_cols=83  Identities=12%  Similarity=-0.009  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      .+..........++.+++..++..+--+.|+.+..-..-|.++...|+|.+|+..++.+....+..+.....++.|+..+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34444455555778888888888777788888888888888888888888888888888777777777777777777777


Q ss_pred             CCH
Q 006562          463 GES  465 (640)
Q Consensus       463 ~~~  465 (640)
                      |+.
T Consensus        92 ~Dp   94 (153)
T TIGR02561        92 GDA   94 (153)
T ss_pred             CCh
Confidence            764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.48  E-value=0.26  Score=38.74  Aligned_cols=44  Identities=16%  Similarity=0.125  Sum_probs=21.7

Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY  579 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (640)
                      ++++|.++..+.|..+..++.+|.-+-....|+++....++++.
T Consensus        63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls  106 (111)
T PF04781_consen   63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS  106 (111)
T ss_pred             hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            44555555555555555555555444444444444444444443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.46  E-value=1.5  Score=40.34  Aligned_cols=195  Identities=11%  Similarity=0.064  Sum_probs=114.0

Q ss_pred             hhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCCHH-HHHHHHHHHH
Q 006562          353 DMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKED-----PMYPE-ALIGRGTARA  426 (640)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~~~~~-~~~~la~~~~  426 (640)
                      ++.+....+....+...++.-.+....-..++-....+.+..|+|++-...|.+.+..-     .+..+ ....+-..-.
T Consensus        37 ~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS  116 (440)
T KOG1464|consen   37 GLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS  116 (440)
T ss_pred             cccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence            33333333333333333333333333444567777889999999999999999987531     11111 1111111111


Q ss_pred             HccCHHHHHHHHHHHHHh--CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHH
Q 006562          427 FQRELEAAISDFTEAIQS--NPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN------------SADILHE  488 (640)
Q Consensus       427 ~~g~~~~A~~~~~~al~~--~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~  488 (640)
                      ...+.+--.+.|+..+..  +..+...|    ..+|.+|+..+.|.+-...+++.-.....            -.+++..
T Consensus       117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl  196 (440)
T KOG1464|consen  117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL  196 (440)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence            222333333344433322  12233333    45899999999998888877776543211            1235555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCcH--HH----HHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562          489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--SA----YTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (640)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~----~~~la~~~~~~g~~~~A~~~~~~a~~~~  547 (640)
                      -..+|..+.+-..-...|++++.....-|  ..    .-.=|..+.+.|+|++|...|-+++...
T Consensus       197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY  261 (440)
T KOG1464|consen  197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY  261 (440)
T ss_pred             HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence            56778888888888889999987753322  22    2223566788899999999888888764

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.39  E-value=0.08  Score=55.85  Aligned_cols=112  Identities=22%  Similarity=0.249  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHcccCc-----hhHHHhHHHHHHhh--hcHHHHHHHHHHHHHcCCCchHHHHHHH
Q 006562           38 TARIELAKLCSLRNWSKAIRILDSLLAQSYE-----IQDICNRAFCYSQL--ELHKHVIRDCDKALQLDPTLLQAYILKG  110 (640)
Q Consensus        38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-----~~~~~~~A~~~~~~--g~~~~Ai~~~~~al~~~P~~~~a~~~~g  110 (640)
                      ....+....|+.++|..|.--|..++.+.|.     ...+.+++.||.++  |+|.+++.+|+.|+...|....+.+.++
T Consensus        55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~  134 (748)
T KOG4151|consen   55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA  134 (748)
T ss_pred             HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence            3335666889999999999999999888741     12267899988876  6999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHH
Q 006562          111 CAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (640)
Q Consensus       111 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~  149 (640)
                      ..|..+++++=|++...-.....|..+..-.-..++...
T Consensus       135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~l  173 (748)
T KOG4151|consen  135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGL  173 (748)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence            999999999999999888878888875544333344333

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=95.37  E-value=0.96  Score=35.85  Aligned_cols=93  Identities=22%  Similarity=0.219  Sum_probs=55.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hC
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPM------------YPEALIGRGTARAFQRELEAAISDFTEAIQ-------SN  445 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~  445 (640)
                      +..|.-.+..|-|.+|...++++++....            +..++..++..+..+|+|++++....+++.       ++
T Consensus        13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~   92 (144)
T PF12968_consen   13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELH   92 (144)
T ss_dssp             HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc
Confidence            34456667778899999999988875322            235666777778888888777666655553       33


Q ss_pred             CCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          446 PSAGE----AWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       446 p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      .+...    +.+..+..+...|+.++|+..|+.+-+
T Consensus        93 qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   93 QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            33322    223445555566666666666655543

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.26  E-value=5.6  Score=43.25  Aligned_cols=220  Identities=17%  Similarity=0.145  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCc-------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSN-------PSA-------------------GEAWKRRGQARAALGESVEAIQD  471 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~la~~~~~~~~~~~A~~~  471 (640)
                      +..-|.+....+..++|.+++.++++.-       +..                   .......+.+..-.+++..|...
T Consensus       304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~  383 (608)
T PF10345_consen  304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQE  383 (608)
T ss_pred             HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            3344555566666667777777765421       110                   01344566777778999999888


Q ss_pred             HHHHHHhC---CC------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHhCCCcH---HHHHHHHHHHHHcC
Q 006562          472 LSKALEFE---PN------SADILHERGIVNFKFKDFNAAVEDLS--------ACVKLDKENK---SAYTYLGLALSSIG  531 (640)
Q Consensus       472 ~~~al~~~---p~------~~~~~~~la~~~~~~~~~~~A~~~~~--------~al~~~~~~~---~~~~~la~~~~~~g  531 (640)
                      ...+....   |.      .+..++..|..+...|+.+.|...|.        .+....+.+.   -+..++..++...+
T Consensus       384 l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~  463 (608)
T PF10345_consen  384 LEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYES  463 (608)
T ss_pred             HHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhc
Confidence            88777653   22      36678889999999999999999998        3333333332   23344566666554


Q ss_pred             CHHH----HHHHHHHHHccCcccHHHHHHHHHH-----HH--HhcCHHHHHHHHHHHHHhC-C--C----ChHHHHHHHH
Q 006562          532 EYKK----AEEAHLKAIQLDRNFLEAWGHLTQF-----YQ--DLANSEKALECLQQVLYID-K--R----FSKAYHLRGL  593 (640)
Q Consensus       532 ~~~~----A~~~~~~a~~~~~~~~~~~~~la~~-----~~--~~g~~~~A~~~~~~al~~~-~--~----~~~~~~~la~  593 (640)
                      ....    +...+...-....+.+..++..+..     +.  ..-...++...+..+++.. .  +    ...++..++.
T Consensus       464 ~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~  543 (608)
T PF10345_consen  464 SRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGH  543 (608)
T ss_pred             ccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence            4333    3344433222211111112211111     11  1122336666666666544 1  1    1234556666


Q ss_pred             HHHhcCCHHHHHHHHHHhhccCC---CCHHHHH------HHHHHHHHcCCcccc
Q 006562          594 LLHGLGQHKKAIKDLSSGLGIDP---SNIECLY------LRASCYHAIGEYREA  638 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~------~la~~~~~~g~~~~A  638 (640)
                      .++ .|+..+.......+.....   +....++      .++..+...|+.++|
T Consensus       544 ~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka  596 (608)
T PF10345_consen  544 RLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA  596 (608)
T ss_pred             HHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            666 7888887777666665433   3243332      456667888888776

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.24  E-value=0.25  Score=50.74  Aligned_cols=90  Identities=21%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHcccCch-------hHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562           44 AKLCSLRNWSKAIRILDSLLAQSYEI-------QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (640)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~~~~-------~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~  116 (640)
                      +..|+..+|..++..|...+.--+..       ...-+++.||+.+.+.+.|++.++.|=+.||.++-..+.+-.+...-
T Consensus       362 ~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E  441 (872)
T KOG4814|consen  362 KKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAE  441 (872)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            37799999999999999987543211       11457888999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhc
Q 006562          117 GRKEEALSVWEKGYEHA  133 (640)
Q Consensus       117 g~~~~A~~~~~~al~~~  133 (640)
                      |+-++|+.+.......-
T Consensus       442 ~~Se~AL~~~~~~~s~~  458 (872)
T KOG4814|consen  442 DKSEEALTCLQKIKSSE  458 (872)
T ss_pred             cchHHHHHHHHHHHhhh
Confidence            99999999988886443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.20  E-value=4  Score=41.24  Aligned_cols=95  Identities=9%  Similarity=0.042  Sum_probs=78.8

Q ss_pred             HHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhc
Q 006562           56 IRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR-KEEALSVWEKGYEHA  133 (640)
Q Consensus        56 i~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~-~~~A~~~~~~al~~~  133 (640)
                      +..|..|...- .|...|.+-..-..+.+.+.+.-..|.++|...|++++.|+-.|.-.+..+. .+.|...|.++|.++
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n  170 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN  170 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence            66788888776 5777777766666666669999999999999999999999999998888776 999999999999999


Q ss_pred             cCChHHHHHHHhHHHHH
Q 006562          134 LHQSADLKQFLELEELL  150 (640)
Q Consensus       134 ~~~~~~~~~~~~l~~~~  150 (640)
                      |+.|.-+..-.++.-..
T Consensus       171 pdsp~Lw~eyfrmEL~~  187 (568)
T KOG2396|consen  171 PDSPKLWKEYFRMELMY  187 (568)
T ss_pred             CCChHHHHHHHHHHHHH
Confidence            99998776655555443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.14  E-value=1.1  Score=46.08  Aligned_cols=136  Identities=18%  Similarity=0.107  Sum_probs=100.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          463 GESVEAIQDLSKALEFEPNSADILHE--RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (640)
                      +...-++..+...+.++|.++..+..  +...+...++...+.-.+..++..+|.+..+..+++......|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            44444677777777777877765433  4666777888888888888999999999888888888888877766665555


Q ss_pred             HH-HHccCcccHHHHHHH------HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc
Q 006562          541 LK-AIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL  598 (640)
Q Consensus       541 ~~-a~~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  598 (640)
                      .. +....|.+......+      +.....+|+..++....+++....|.++.+...+.....+.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence            54 777788887766555      77777888888888888888888888866665555553333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=95.11  E-value=0.18  Score=40.88  Aligned_cols=82  Identities=22%  Similarity=0.152  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHc-ccCc--hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHH
Q 006562           34 ASAITARIELAKLCS----LRNWSKAIRILDSLLA-QSYE--IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY  106 (640)
Q Consensus        34 ~~~~~~~~~~~~~~~----~~~y~~Ai~~y~~ai~-~~~~--~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~  106 (640)
                      ......+.++++.+-    ..|.++.|.+++..+. -.|.  -.+.|=+|..++++|+|++++..++..|+.+|+|.++.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~  108 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL  108 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            334455577777763    3467889999999997 2232  24456689999999999999999999999999999887


Q ss_pred             HHHHHHHHH
Q 006562          107 ILKGCAFSA  115 (640)
Q Consensus       107 ~~~g~~y~~  115 (640)
                      .+.-.+.-+
T Consensus       109 ~Lk~~ied~  117 (149)
T KOG3364|consen  109 ELKETIEDK  117 (149)
T ss_pred             HHHHHHHHH
Confidence            776544433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.99  E-value=0.38  Score=40.04  Aligned_cols=71  Identities=17%  Similarity=0.032  Sum_probs=36.0

Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      .++.+++...+...--+.|+.+..-..-|.++...|+|.+|+..|+......+..+...-.++.|+..+|+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            44555555555554445555555555555555555555555555555544444444444444444444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=1.6  Score=44.99  Aligned_cols=136  Identities=21%  Similarity=0.096  Sum_probs=105.5

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          429 RELEAAISDFTEAIQSNPSAGEAWKR--RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  506 (640)
                      |....++..+...+..+|.++..+..  +...+...+....+.-.+...+..+|.+..++..++......|....+...+
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            33344666677777788888776433  4777778899989999999999999999999999999988888776666665


Q ss_pred             HH-HHHhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh
Q 006562          507 SA-CVKLDKENKSAYTYL------GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (640)
Q Consensus       507 ~~-al~~~~~~~~~~~~l------a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  564 (640)
                      .. +....|++......+      +.....+|+..++.....++....|.++.....+.....+.
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~  189 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ  189 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence            55 888889887665554      88888899999999999999999999877665555543333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.62  E-value=2.3  Score=44.61  Aligned_cols=186  Identities=14%  Similarity=0.073  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---------HHHHHHHHHHHHcCCHHH
Q 006562          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---------EAWKRRGQARAALGESVE  467 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---------~~~~~la~~~~~~~~~~~  467 (640)
                      .++|+++.    +-+| ++..|..+|......-.++.|...|-+.-.. |.-.         .--...|.+-..-|++++
T Consensus       679 ledA~qfi----EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  679 LEDAIQFI----EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             hHHHHHHH----hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            45555443    3355 4899999999888888888888777665321 1100         001223445555688898


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      |.+.|-.+-+.   +     ....++.+.|+|-...+.++..-.-..  ....++..+|..+..+..|++|.++|...-.
T Consensus       753 aek~yld~drr---D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  753 AEKLYLDADRR---D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             hhhhhhccchh---h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88887543221   1     223456677888777776665322211  1247888899999999999999998876532


Q ss_pred             cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      .        .++..+++....+++-..    ....-|++...+-.+|..+...|.-++|.+.|
T Consensus       825 ~--------e~~~ecly~le~f~~LE~----la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~  875 (1189)
T KOG2041|consen  825 T--------ENQIECLYRLELFGELEV----LARTLPEDSELLPVMADMFTSVGMCDQAVEAY  875 (1189)
T ss_pred             h--------HhHHHHHHHHHhhhhHHH----HHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence            2        233444444444443222    22233455555555555555555555555444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.59  E-value=0.59  Score=41.23  Aligned_cols=97  Identities=20%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cH----HHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NK----SAY  520 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~----~~~  520 (640)
                      .++..+|..|...|+.+.|++.|.++.......   .+.+..+..+.+..+++.....++.++-.....  ++    ...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            345566666666666666666666655543222   345555566666666666666666665443211  11    223


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562          521 TYLGLALSSIGEYKKAEEAHLKAIQL  546 (640)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~a~~~  546 (640)
                      ..-|..+...++|..|...|-.+...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcC
Confidence            34455666667777777776665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.51  E-value=0.89  Score=37.05  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (640)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (640)
                      +..+.++.-+.+.++|+.++.+.+..++..|++..+
T Consensus        72 e~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa  107 (149)
T KOG3364|consen   72 ECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA  107 (149)
T ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence            334444444444555555555555555444444443

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.40  E-value=0.086  Score=32.48  Aligned_cols=29  Identities=28%  Similarity=0.216  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562          104 QAYILKGCAFSALGRKEEALSVWEKGYEH  132 (640)
Q Consensus       104 ~a~~~~g~~y~~~g~~~~A~~~~~~al~~  132 (640)
                      +.|.++|.+-+..++|++|+..|++|+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            57889999999999999999999999654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=3  Score=35.78  Aligned_cols=133  Identities=14%  Similarity=-0.043  Sum_probs=69.1

Q ss_pred             hcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHH
Q 006562          495 KFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSE  568 (640)
Q Consensus       495 ~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~  568 (640)
                      ..+..++|+..|...-+..-..  .-+.+..+.+....|+...|+..|.++-...|.-    ..+...-+.++...|-|+
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3445555666555554443222  2344455666666666667777666655443221    123344455556666666


Q ss_pred             HHHHHHHHHH-HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562          569 KALECLQQVL-YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (640)
Q Consensus       569 ~A~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (640)
                      +-....+..- ..+|-...+...||..-++.|++.+|..+|..... +...+..-...+++
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~  209 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI  209 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence            6554444321 11223334556667777777777777777776654 33333333344443

>KOG3783 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.24  E-value=1.5  Score=44.70  Aligned_cols=229  Identities=16%  Similarity=0.070  Sum_probs=126.1

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--AGEAWKRRGQARAALGESVEAIQDLSKA  475 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~a  475 (640)
                      ....+.+.......|.++...+..+..+...|+.+.|+..+...+...-.  ..-.++.+|.++....+|..|...+...
T Consensus       250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L  329 (546)
T KOG3783|consen  250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL  329 (546)
T ss_pred             HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            44555555666678888888888888888888888888888887761101  1235667888888888999999998888


Q ss_pred             HHhCCCCHHHHHHHH-HHHHh--------cCCHHHHHHHHHHH---HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          476 LEFEPNSADILHERG-IVNFK--------FKDFNAAVEDLSAC---VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA  543 (640)
Q Consensus       476 l~~~p~~~~~~~~la-~~~~~--------~~~~~~A~~~~~~a---l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  543 (640)
                      .....-.-..|..++ .|++.        .|+-+.|..+++..   +...|.+...-.         .-..++.++-.+.
T Consensus       330 ~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~---------f~~RKverf~~~~  400 (546)
T KOG3783|consen  330 RDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEK---------FIVRKVERFVKRG  400 (546)
T ss_pred             HhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhH---------HHHHHHHHHhccc
Confidence            877654444444443 44432        22334443333332   222222211100         0011222221111


Q ss_pred             HccCcccHH--HHHHHHHHHHHh--cCHHHHHHHHHHHHH---h-CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          544 IQLDRNFLE--AWGHLTQFYQDL--ANSEKALECLQQVLY---I-DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       544 ~~~~~~~~~--~~~~la~~~~~~--g~~~~A~~~~~~al~---~-~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      - .++..+.  .+..++.++..-  ...++.. -++....   . ++++ ..-++.+|.++..+|+...|..+|...++.
T Consensus       401 ~-~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~  478 (546)
T KOG3783|consen  401 P-LNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK  478 (546)
T ss_pred             c-ccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            0 1111111  123333332211  1122222 1111111   1 2222 235678899999999999999999988732


Q ss_pred             ---CCC----CHHHHHHHHHHHHHcCC-ccc
Q 006562          615 ---DPS----NIECLYLRASCYHAIGE-YRE  637 (640)
Q Consensus       615 ---~p~----~~~~~~~la~~~~~~g~-~~~  637 (640)
                         ..+    -|.+++.+|..|..+|. ..+
T Consensus       479 e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e  509 (546)
T KOG3783|consen  479 ESKRTEDLWAVPFALYELALLYWDLGGGLKE  509 (546)
T ss_pred             HHhhccccccccHHHHHHHHHHHhcccChHH
Confidence               111    25789999999999887 443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.17  E-value=0.86  Score=40.22  Aligned_cols=98  Identities=12%  Similarity=0.004  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChH----HH
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RFSK----AY  588 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~~~----~~  588 (640)
                      .++..+|..|...|+.+.|++.|.++.......   .+.+..+.++....+++.....++.++-..-.  .+..    ..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            455566666666666666666666665543222   44555666666666777776666666654322  1111    23


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          589 HLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      ..-|..+...++|..|...|-.+..-.
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence            344666677888888888887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.06  E-value=0.2  Score=50.24  Aligned_cols=102  Identities=22%  Similarity=0.133  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ---RELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      .+.....|.-.+..+....|+..|.+++...|.....+.+.+.+++..   |+.-.|+.....++.++|....+++.++.
T Consensus       374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~  453 (758)
T KOG1310|consen  374 IEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLAR  453 (758)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHH
Confidence            333444455555667788899999999999999888888888887764   56677888888899999988999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~  482 (640)
                      ++..++++.+|+.....+....|.+
T Consensus       454 aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  454 ALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             HHHHHhhHHHhhhhHHHHhhcCchh
Confidence            9999999999999988888888855

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.82  E-value=0.16  Score=47.31  Aligned_cols=81  Identities=7%  Similarity=0.077  Sum_probs=42.2

Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHH
Q 006562          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE-RGIVNFKFKDFNAAVEDLSACVKLDKENKSA  519 (640)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~~~~~~~  519 (640)
                      +....|+++..|...+......+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...+.++++.+|++|..
T Consensus        99 ~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~i  178 (435)
T COG5191          99 STNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRI  178 (435)
T ss_pred             hhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchH
Confidence            333445555555555555555555555555555555555555555544 2333444455555555555555555555554


Q ss_pred             HH
Q 006562          520 YT  521 (640)
Q Consensus       520 ~~  521 (640)
                      |.
T Consensus       179 w~  180 (435)
T COG5191         179 WI  180 (435)
T ss_pred             HH
Confidence            44

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.81  E-value=0.11  Score=46.34  Aligned_cols=60  Identities=18%  Similarity=0.338  Sum_probs=50.6

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH
Q 006562          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG  449 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  449 (640)
                      .....++.+.|.+.|.+++.+.|.....|+.+|......|+++.|...|++.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            455678888888888888888888888888888888888888888888888888888763

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.71  E-value=0.34  Score=37.57  Aligned_cols=30  Identities=27%  Similarity=0.214  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhcc
Q 006562          105 AYILKGCAFSALGRKEEALSVWEKGYEHAL  134 (640)
Q Consensus       105 a~~~~g~~y~~~g~~~~A~~~~~~al~~~~  134 (640)
                      +...+|.++...|++++|+..++.|+.+..
T Consensus        43 all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   43 ALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            445555555555555555555555555543

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.70  E-value=5  Score=41.33  Aligned_cols=154  Identities=19%  Similarity=0.125  Sum_probs=87.2

Q ss_pred             cCHHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C------------
Q 006562          429 RELEAAISDFTEAIQSN------------PSAGEAWKRRGQARAALGESVEAIQDLSKALEF-----E------------  479 (640)
Q Consensus       429 g~~~~A~~~~~~al~~~------------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~------------  479 (640)
                      ..|++|...|.-+....            |-+.+.+..++.+...+|+.+-|....++++=.     .            
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            45777777777666442            444567777777888888888877777777632     1            


Q ss_pred             ----CCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHcc----
Q 006562          480 ----PNSAD---ILHERGIVNFKFKDFNAAVEDLSACVKLDKE-NKSAYTYLGLALS-SIGEYKKAEEAHLKAIQL----  546 (640)
Q Consensus       480 ----p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~----  546 (640)
                          |.+-.   +++.....+.+.|-+..|.++.+-.+.++|. +|.+...+..+|. +..+|.--+..++..-..    
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence                11111   2223334445567777777777777777776 6655555444443 345555555555544221    


Q ss_pred             -CcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCC
Q 006562          547 -DRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKR  583 (640)
Q Consensus       547 -~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~  583 (640)
                       .|+. ..-..+|..|.....   .+.|...+.+|+...|.
T Consensus       412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~  451 (665)
T KOG2422|consen  412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHPL  451 (665)
T ss_pred             hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence             2322 222344555554443   45666666677666553

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.69  E-value=0.75  Score=41.96  Aligned_cols=65  Identities=26%  Similarity=0.263  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHhcCHH-------HHHHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          551 LEAWGHLTQFYQDLANSE-------KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       551 ~~~~~~la~~~~~~g~~~-------~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      +..+..+|.+|...|+.+       .|+..|.+++....      +.....+.+|.+..+.|++++|..+|.+++...
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~  195 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK  195 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence            344555566666555543       34444444443321      224567788888888888888888888888653

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.67  E-value=0.86  Score=47.06  Aligned_cols=95  Identities=11%  Similarity=-0.069  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (640)
                      +.+-|.-+++..+|..+++.|...+...|.+      +.....++.||..+.+.+.|.++++.|-+.+|.++-....+..
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            3445556666777777777777777666554      3355667777777777777777777777777777777677777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHh
Q 006562          492 VNFKFKDFNAAVEDLSACVKL  512 (640)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~  512 (640)
                      +....|..++|+.........
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            777777777777776665543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.62  E-value=0.82  Score=51.51  Aligned_cols=166  Identities=14%  Similarity=0.185  Sum_probs=115.3

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHH------HHHHHH-HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 006562          380 SVDFRLSRGIAQVNEGKYASAIS------IFDQIL-KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------  444 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~------~~~~~l-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------  444 (640)
                      ...-....|......|.+.+|.+      .+.... ...|.....+..++.++...|++++|+..-.++.-.        
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence            34455667777777888887777      444332 356778889999999999999999999988776532        


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-
Q 006562          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-  515 (640)
Q Consensus       445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-  515 (640)
                      .|+....+..++...+..++...|+..+.++..+        .|.-..+..+++.++...++++.|+++++.|...+.. 
T Consensus      1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v 1090 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKV 1090 (1236)
T ss_pred             CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence            2344567777888888888888888888887764        2333445667777788888888898888888875321 


Q ss_pred             -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          516 -------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       516 -------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                             ....+..++..+...+++..|.........
T Consensus      1091 ~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1091 LGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             cCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence                   234455556666666666666555544443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.58  E-value=6.1  Score=41.23  Aligned_cols=176  Identities=13%  Similarity=0.026  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHH------HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Q 006562          386 SRGIAQVNEGKYASAISIFDQI------LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGEAWKRRGQ  457 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~------l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~  457 (640)
                      .+|..+...|.|.+|.++|.+.      ++...+  .-.+..+.-+...|..++-....++-.+-  +-+.+.   ..|.
T Consensus       637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAE  711 (1081)
T KOG1538|consen  637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAE  711 (1081)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHH
Confidence            4566777778888888887653      221111  11233444444455444444443332211  111111   2355


Q ss_pred             HHHHcCCHHHHHHHHH----------HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          458 ARAALGESVEAIQDLS----------KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~----------~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      ++...|+.++|+...-          -+-+++....+.+...+..+.....+.-|-+.|.+.-.        ...+...+
T Consensus       712 mLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlH  783 (1081)
T KOG1538|consen  712 MLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLH  783 (1081)
T ss_pred             HhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhhe
Confidence            5666666666665431          11122233334444445555555555555555544311        12234455


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (640)
                      ...++|++|....++.-+.-   +.+|+-.|+.+....++++|.+.|.++
T Consensus       784 ve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  784 VETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             eecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            56677777766655433322   345555566655666666665555544

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.54  E-value=4.4  Score=41.64  Aligned_cols=160  Identities=14%  Similarity=0.034  Sum_probs=91.8

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          388 GIAQVNEGKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (640)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  466 (640)
                      -......++++++....... +.-|.- ..-....+..+...|..+.|+...        .+++..+.+|   .+.|+.+
T Consensus       268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~  335 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLD  335 (443)
T ss_dssp             HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HH
T ss_pred             HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHH
Confidence            34456688999987777521 122222 344566677777788777776653        3445555444   5688888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (640)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  546 (640)
                      .|.+..+.     .+++..|..+|...+..|+++-|..+|.++-        -+-.+..+|...|+.+.-.+....+...
T Consensus       336 ~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  336 IALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            88766533     3367788889999999999998888888753        2345667777788876666655555443


Q ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (640)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (640)
                      ...     ...-.++...|+.++.+..+.+.
T Consensus       403 ~~~-----n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  403 GDI-----NIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             T-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             cCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence            322     12223344567777777766543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=93.52  E-value=1.1  Score=40.96  Aligned_cols=49  Identities=27%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             ccCHHHHHHHHHHHHHh----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          428 QRELEAAISDFTEAIQS----NPS---AGEAWKRRGQARAALGESVEAIQDLSKAL  476 (640)
Q Consensus       428 ~g~~~~A~~~~~~al~~----~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al  476 (640)
                      ...+++|+..|.-++-.    ...   -+..+..+|++|...|+.+.....+++|+
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al  145 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKAL  145 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence            45677777777666532    111   13445556666666666444444444443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.43  E-value=0.32  Score=37.75  Aligned_cols=57  Identities=12%  Similarity=0.135  Sum_probs=45.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccc-----Cc-----hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562           43 LAKLCSLRNWSKAIRILDSLLAQS-----YE-----IQDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (640)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~-----~~-----~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~   99 (640)
                      .....+.|||..|++.+.+..+..     +.     ..+..++|..+...|++++|+..+++|+.+-
T Consensus         5 ~~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    5 YLNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            345688999999988888876554     22     1235789999999999999999999999863

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.43  E-value=0.2  Score=31.68  Aligned_cols=30  Identities=37%  Similarity=0.347  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 006562          103 LQAYILKGCAFSALGRKEEALSVWEKGYEH  132 (640)
Q Consensus       103 ~~a~~~~g~~y~~~g~~~~A~~~~~~al~~  132 (640)
                      ..++..+|.+|..+|++++|+..+++++++
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788999999999999999999999554

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.31  E-value=4.8  Score=34.60  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             cCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCCHHHH
Q 006562          429 RELEAAISDFTEAIQSNPSA--GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS----ADILHERGIVNFKFKDFNAA  502 (640)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~~~~~~A  502 (640)
                      +..++|+..|..+-+..-..  .-+....+.+....|+...|+..|..+-...|-.    ..+...-+.++...|.|+.-
T Consensus        72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV  151 (221)
T COG4649          72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV  151 (221)
T ss_pred             CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence            44444554444443332222  1233344455555555555555555544332211    11223334444555555554


Q ss_pred             HHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          503 VEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       503 ~~~~~~al-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ....+..- ..+|-...+.-.||...++.|++.+|...|.....
T Consensus       152 ~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         152 SSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            44443321 11222234444555555556666666666555444

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=93.31  E-value=4.4  Score=39.97  Aligned_cols=137  Identities=19%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             HHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          391 QVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR------------ELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       391 ~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g------------~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      ....|.+ .++++.=.+.+..+|+...+|...-.++...-            -.++-+.+...+++.+|+...+|+....
T Consensus        38 ~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w  117 (421)
T KOG0529|consen   38 KREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKW  117 (421)
T ss_pred             HHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            3344555 46677777778888887777765554443321            1233344444444555555555555555


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          458 ARAALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       458 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      ++.+.+  ++..=+...+++++.+|.+-.+|...=.+....    ....+=+.+..+++..++.|..+|.....++
T Consensus       118 ~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL  193 (421)
T KOG0529|consen  118 VLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLL  193 (421)
T ss_pred             HHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHH
Confidence            444433  234444455555555554443333222222111    1233344444444444444444444444433

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.31  E-value=0.25  Score=46.12  Aligned_cols=83  Identities=8%  Similarity=0.052  Sum_probs=45.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH-LTQFYQDLANSEKALECLQQVLYIDKRFSK  586 (640)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~  586 (640)
                      ++....|+++..|...+......|.+.+--..|.+++..+|.+.+.|.. .+.-+...++.+.+...|.++++.+|++|.
T Consensus        98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~  177 (435)
T COG5191          98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPR  177 (435)
T ss_pred             hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCch
Confidence            3334445555555555555555555555555666666666666555554 333344455566666666666666665555


Q ss_pred             HHHH
Q 006562          587 AYHL  590 (640)
Q Consensus       587 ~~~~  590 (640)
                      .|..
T Consensus       178 iw~e  181 (435)
T COG5191         178 IWIE  181 (435)
T ss_pred             HHHH
Confidence            5543

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=93.23  E-value=0.94  Score=51.08  Aligned_cols=161  Identities=17%  Similarity=0.196  Sum_probs=101.0

Q ss_pred             HHHHHHHHHcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCcH
Q 006562          453 KRRGQARAALGESVEAIQ------DLSK-ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENK  517 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~  517 (640)
                      ...+......|.+.+|.+      .+.+ .-.+.|.....+..++.++...|++++|+..-.++.-+        .|+..
T Consensus       936 ~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~ 1015 (1236)
T KOG1839|consen  936 PEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTK 1015 (1236)
T ss_pred             hhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHH
Confidence            334444555556665555      3331 12234555666777777777777777777776665433        23445


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-------
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK-------  582 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-------  582 (640)
                      ..+..++...+..++...|...+.++...        .|.......+++.++...++++.|+.+.+.++....       
T Consensus      1016 ~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~ 1095 (1236)
T KOG1839|consen 1016 LAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKE 1095 (1236)
T ss_pred             HHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccc
Confidence            56666777777777777777777766553        344455556777777777888888888887776432       


Q ss_pred             -CChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       583 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                       .....+..++..+..++++..|+...+....
T Consensus      1096 l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1096 LETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred             hhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence             2344566777777777777777776665543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=93.14  E-value=4.8  Score=41.94  Aligned_cols=213  Identities=14%  Similarity=0.090  Sum_probs=116.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKE--------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS--  447 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~--------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--  447 (640)
                      |-.+|...+..=+++-|.+.|.++...              ....|. -..+|..+...|.+.+|.+.|.+.-..+..  
T Consensus       588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE  666 (1081)
T KOG1538|consen  588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE  666 (1081)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence            334455555555666666665554211              111122 345778888889999998888764221110  


Q ss_pred             --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH----------HHHHHhC
Q 006562          448 --AGEAWKRRGQARAALGESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVEDL----------SACVKLD  513 (640)
Q Consensus       448 --~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~----------~~al~~~  513 (640)
                        ..--.+..++-+...|..++-....++-.+.  +-+.+.   ..+.++...|+.++|+...          +-+-+++
T Consensus       667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld  743 (1081)
T KOG1538|consen  667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD  743 (1081)
T ss_pred             HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc
Confidence              0012233455555555555544444432221  111222   2467777888888877643          2222333


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (640)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (640)
                      ..+.+.+...+..+.....+.-|.+.|.+.-..        -.+..++...++|++|..+.++.-+.-   +.+|+-.|+
T Consensus       744 ~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaq  812 (1081)
T KOG1538|consen  744 KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQ  812 (1081)
T ss_pred             hhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhhCcccc---ccccchHHH
Confidence            444555666666666667777777777654321        234556677889999988776654333   334555566


Q ss_pred             HHHhcCCHHHHHHHHHHh
Q 006562          594 LLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~a  611 (640)
                      .+....++++|.+.|.+|
T Consensus       813 wLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             HhhhhhhHHHHHHHHHHh
Confidence            666666666666555544

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.08  E-value=9  Score=39.58  Aligned_cols=153  Identities=16%  Similarity=0.067  Sum_probs=90.8

Q ss_pred             CChHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----C------------
Q 006562          395 GKYASAISIFDQILKE------------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-----N------------  445 (640)
Q Consensus       395 g~~~~A~~~~~~~l~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~------------  445 (640)
                      ..|++|...|.-+...            .|.+...+..++.+...+|+.+-|....++++-.     .            
T Consensus       252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL  331 (665)
T KOG2422|consen  252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL  331 (665)
T ss_pred             hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence            3456666666655443            3556677888888888888877777777666511     1            


Q ss_pred             ----CCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH-HhcCCHHHHHHHHHHHH-----H
Q 006562          446 ----PSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPN-SADILHERGIVN-FKFKDFNAAVEDLSACV-----K  511 (640)
Q Consensus       446 ----p~~~~---~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~-~~~~~~~~A~~~~~~al-----~  511 (640)
                          |.+-.   +++..-..+.+.|-+..|.++++-.+.++|. ++.+...+..+| ++..+|.--+..++..-     .
T Consensus       332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~  411 (665)
T KOG2422|consen  332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS  411 (665)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence                11211   2333344556678888888888888888887 665544444443 34556665565555542     2


Q ss_pred             hCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCc
Q 006562          512 LDKENKSAYTYLGLALSSIGE---YKKAEEAHLKAIQLDR  548 (640)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~  548 (640)
                      .-|+- ..-..+|..|.....   -..|...+.+|+...|
T Consensus       412 ~~PN~-~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  412 QLPNF-GYSLALARFFLRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             hcCCc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence            22332 222334555555444   4567777888877766

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.69  E-value=12  Score=38.64  Aligned_cols=43  Identities=23%  Similarity=0.210  Sum_probs=21.0

Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006562          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK  474 (640)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  474 (640)
                      +.|+.+.|.+..++     .+++..|..+|......|+++-|..+|++
T Consensus       330 ~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k  372 (443)
T PF04053_consen  330 QLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQK  372 (443)
T ss_dssp             HCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            44555555444322     12444555555555555555555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.17  E-value=1.8  Score=40.93  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=56.0

Q ss_pred             HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006562           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE  131 (640)
Q Consensus        72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~  131 (640)
                      +...+..+...|+++.++..+++.+..+|.+-.+|.++=.+|...|+...|+..|++.-.
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            356888899999999999999999999999999999999999999999999999999844

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=92.14  E-value=13  Score=36.68  Aligned_cols=127  Identities=13%  Similarity=0.019  Sum_probs=66.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHH
Q 006562          390 AQVNEGKYASAISIFDQILKEDP-M--------YPEALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKR  454 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~~-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~  454 (640)
                      .++.+.++.+|..+-+..+..-. .        .+..|+.+..+|...|+...-...+...+....      ..+.....
T Consensus       135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~  214 (493)
T KOG2581|consen  135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL  214 (493)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence            33445677777776665543211 0        134556666666666665544444443332211      11233444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          455 RGQARAALGESVEAIQDLSKALEF--EPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~--~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      +-+.|...+.|+.|-....+..--  ..+  .....+.+|.+..-+++|..|.+++-+|+...|++
T Consensus       215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            556666666666666555544311  111  12344556666666666666666666666666653

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.07  E-value=10  Score=37.61  Aligned_cols=160  Identities=21%  Similarity=0.224  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-
Q 006562          431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALG------------ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-  497 (640)
Q Consensus       431 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-  497 (640)
                      -.++++.-.+.+..+|+...+|...-.++...-            ..++-+.+...+++.+|+...+|+.+..++.+.+ 
T Consensus        45 d~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~  124 (421)
T KOG0529|consen   45 DEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPH  124 (421)
T ss_pred             chHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCC
Confidence            345777778888888888777766544443221            2344455666667777777777777777776555 


Q ss_pred             -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh------cC
Q 006562          498 -DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL------AN  566 (640)
Q Consensus       498 -~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~------g~  566 (640)
                       ++..=+...+++++.+|.+..+|...-.+.....    ...+=+.+..+++..++.+..+|.+...++...      |+
T Consensus       125 ~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~  204 (421)
T KOG0529|consen  125 SDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGN  204 (421)
T ss_pred             chHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCc
Confidence             3566667777777777776655554443333322    234456666666666666666776666555421      21


Q ss_pred             ------HHHHHHHHHHHHHhCCCChHHHHH
Q 006562          567 ------SEKALECLQQVLYIDKRFSKAYHL  590 (640)
Q Consensus       567 ------~~~A~~~~~~al~~~~~~~~~~~~  590 (640)
                            ...-++....++-.+|++..+|+.
T Consensus       205 ~~~~~~l~sEle~v~saiFTdp~DqS~WfY  234 (421)
T KOG0529|consen  205 FMPKELLQSELEMVHSAIFTDPEDQSCWFY  234 (421)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence                  122334444455556666666655

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=91.99  E-value=12  Score=35.97  Aligned_cols=165  Identities=14%  Similarity=0.056  Sum_probs=108.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCcH--HH
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEF----EP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----KENK--SA  519 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~----~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~--~~  519 (640)
                      ..+..+|...++|.+|+......+.-    +.  .-.+++..-...|....+..+|...+..|-...     |...  ..
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            45678888999999998887766543    21  224566667788888888888888887775432     2111  22


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCcc---cHH---HHHHHHHHHHHhcCHHHHHHHH--HHHHHhCCCChHHHHHH
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRN---FLE---AWGHLTQFYQDLANSEKALECL--QQVLYIDKRFSKAYHLR  591 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~---~~~~la~~~~~~g~~~~A~~~~--~~al~~~~~~~~~~~~l  591 (640)
                      -..-|..+....+|..|..+|-++++-...   +..   ++-++-.+-...+..++--..+  +.+++.......+....
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav  291 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV  291 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence            223366677778999999999999875421   122   2233333334455555544433  45566666777888888


Q ss_pred             HHHHHh--cCCHHHHHHHHHHhhccCCC
Q 006562          592 GLLLHG--LGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       592 a~~~~~--~g~~~~A~~~~~~al~~~p~  617 (640)
                      +.++..  +.+|+.|+..|..-+..+|-
T Consensus       292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  292 AEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            888765  45889999999887776663

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=91.92  E-value=14  Score=41.86  Aligned_cols=131  Identities=21%  Similarity=0.185  Sum_probs=91.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQ----R---ELEAAISDFTEAIQSNPSAGEAWKR  454 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~  454 (640)
                      +....+++....|+.|+..|+++-...|..   .++.+..|.....+    |   .+++|+..|++.- ..|.-|--|..
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  557 (932)
T PRK13184        479 LAVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLG  557 (932)
T ss_pred             ccCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHh
Confidence            445567788899999999999999998875   46777777776543    2   4777777777753 34556677888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCc
Q 006562          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-----KDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~  516 (640)
                      .|.+|..+|++++-++++.-+++..|.++.+-...-.+-+++     .+-..|....--++...|..
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  624 (932)
T PRK13184        558 KALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK  624 (932)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            899999999999999999999999998876433322222221     12234444444555555543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.86  E-value=0.32  Score=30.63  Aligned_cols=30  Identities=17%  Similarity=0.189  Sum_probs=25.4

Q ss_pred             hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562           70 QDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (640)
Q Consensus        70 ~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~   99 (640)
                      ..+.++|.+|..+|++++|+..+++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            357899999999999999999999998764

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=91.82  E-value=0.27  Score=27.35  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          104 QAYILKGCAFSALGRKEEALSVWE  127 (640)
Q Consensus       104 ~a~~~~g~~y~~~g~~~~A~~~~~  127 (640)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356667777777777777776554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.44  E-value=18  Score=36.90  Aligned_cols=93  Identities=13%  Similarity=-0.058  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (640)
                      .++..+-.++.....+.-....+.+++... .+..++..++.+|... ..++-...+++.++.+-++...-..++..|.+
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk  144 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK  144 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            333344444444444444455555555443 3444555566666555 44455555666666655555555555555544


Q ss_pred             cCCHHHHHHHHHHHHH
Q 006562          496 FKDFNAAVEDLSACVK  511 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~  511 (640)
                       ++.+.+..+|.+++.
T Consensus       145 -ik~sk~a~~f~Ka~y  159 (711)
T COG1747         145 -IKKSKAAEFFGKALY  159 (711)
T ss_pred             -hchhhHHHHHHHHHH
Confidence             555666666666554

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.31  E-value=1.2  Score=43.68  Aligned_cols=61  Identities=20%  Similarity=0.007  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  476 (640)
                      .+-..+..||..+++.+.|+....+.+..+|....-+...|.++..+.+|.+|...+--+.
T Consensus       229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999999999999887665543

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.02  E-value=1.3  Score=41.23  Aligned_cols=68  Identities=18%  Similarity=0.095  Sum_probs=60.9

Q ss_pred             HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHH
Q 006562           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADL  140 (640)
Q Consensus        73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  140 (640)
                      -+.=..+.+.++++.|....++.+.++|+++.-+-=+|.+|.++|-+.-|+..++..++..|+.+...
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence            35556788899999999999999999999999999999999999999999999999999999887653

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=91.01  E-value=14  Score=34.67  Aligned_cols=161  Identities=17%  Similarity=0.122  Sum_probs=89.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCcHHHH--H
Q 006562          455 RGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-----KENKSAY--T  521 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~--~  521 (640)
                      +..+++..|+|.+|+......+.-      .|.-..++..-..+|....+..++...+..+-...     |....+.  .
T Consensus       131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL  210 (421)
T COG5159         131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL  210 (421)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence            456677788888888776665532      23334566666777777777777777666654432     3222222  2


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcc---cHHHH-----HHHHHHHHHhcCHHHHHHHHH--HHHH-hCCCChHHHHH
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAW-----GHLTQFYQDLANSEKALECLQ--QVLY-IDKRFSKAYHL  590 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~-----~~la~~~~~~g~~~~A~~~~~--~al~-~~~~~~~~~~~  590 (640)
                      .-|..+....+|.-|..+|-++++-...   +..+.     ..+..+.  .+..++-...+.  ..++ .+.....+...
T Consensus       211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIM--lN~~~evk~vl~~K~t~~~y~~r~I~am~a  288 (421)
T COG5159         211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIM--LNRREEVKAVLRNKNTLKHYDDRMIRAMLA  288 (421)
T ss_pred             hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH--HhhHHHHHHHHccchhHhhhhhhhHHHHHH
Confidence            2355566677888888888888765322   22222     2223322  233333322222  2222 22334455666


Q ss_pred             HHHHHHh--cCCHHHHHHHHHHhhccCCC
Q 006562          591 RGLLLHG--LGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       591 la~~~~~--~g~~~~A~~~~~~al~~~p~  617 (640)
                      .+..+..  +.+|..|+..|..-+..+|-
T Consensus       289 vaea~~NRsL~df~~aL~qY~~el~~D~~  317 (421)
T COG5159         289 VAEAFGNRSLKDFSDALAQYSDELHQDSF  317 (421)
T ss_pred             HHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence            6666543  45788888888877666553

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.78  E-value=1  Score=37.75  Aligned_cols=53  Identities=23%  Similarity=0.142  Sum_probs=43.7

Q ss_pred             hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562           69 IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (640)
Q Consensus        69 ~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~  121 (640)
                      ......+|...+..|+|+-|...++.++..+|++.++...++.+|.++|.-.+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~  122 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE  122 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence            33357888999999999999999999999999999999999999999986544

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.71  E-value=3.3  Score=38.62  Aligned_cols=71  Identities=23%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562          555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (640)
Q Consensus       555 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (640)
                      .++=..+...++++.|....++.+.++|.++.-+.-.|.+|.++|.+.-|+..++..++..|+++.+-...
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir  255 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIR  255 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHH
Confidence            34455567778888888888888888888888888888888888888888888888888888877554433

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.56  E-value=1.8  Score=31.63  Aligned_cols=52  Identities=10%  Similarity=-0.020  Sum_probs=32.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCchhH----HHhHHHHHHhhhcHHHHHHHHH
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQD----ICNRAFCYSQLELHKHVIRDCD   93 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~----~~~~A~~~~~~g~~~~Ai~~~~   93 (640)
                      ++-++|.+.+.++|+..++++++..+++..    +--++.+|...|+|++++...-
T Consensus        12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344667777777777777777776633322    2344556777777777766543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=90.05  E-value=27  Score=36.52  Aligned_cols=184  Identities=13%  Similarity=-0.038  Sum_probs=126.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALS  528 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~  528 (640)
                      ..|......-...|+++...-.|++++---....+.|...+......|+.+-|...+..+.+.. |..+.....-+.+-.
T Consensus       298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            4555666666777888888888888877666677788888888877888888887777777654 566777777777777


Q ss_pred             HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHhCCC---ChHHHHHHHHH-HHhcCCH
Q 006562          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE---CLQQVLYIDKR---FSKAYHLRGLL-LHGLGQH  601 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~~~---~~~~~~~la~~-~~~~g~~  601 (640)
                      ..|++..|...+++.....|+...+-...+.....+|+.+.+..   ++.....-..+   ....+...+.. +.-.++.
T Consensus       378 ~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~  457 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDA  457 (577)
T ss_pred             hhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCH
Confidence            78888888888888887777777777777777777787777773   22222211111   12233334443 3346777


Q ss_pred             HHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       602 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      +.|...+.++++..|.+...+..+..+....+
T Consensus       458 ~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  458 DLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            88888888888888887777766666555443

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=89.90  E-value=22  Score=35.23  Aligned_cols=102  Identities=12%  Similarity=0.038  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CC--CcHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKED-----P-MYPEALIGRGTARAFQRELEAAISDFTEAIQS--NP--SAGE  450 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p--~~~~  450 (640)
                      +..|+.....+-..|+...-...+...+...     . ........+-..|...+.|+.|.....+..--  ..  ..+.
T Consensus       169 ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR  248 (493)
T KOG2581|consen  169 AKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR  248 (493)
T ss_pred             HHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence            4466777777777888777666666655432     1 12344566778888889999998888776411  11  2245


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (640)
                      .++.+|.+..-.++|..|.+++-+++...|.+
T Consensus       249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~  280 (493)
T KOG2581|consen  249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH  280 (493)
T ss_pred             HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence            67789999999999999999999999999975

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.60  E-value=3.2  Score=36.86  Aligned_cols=54  Identities=17%  Similarity=0.194  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHhcCCHHHHH
Q 006562          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAI  605 (640)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~  605 (640)
                      ++..+.+|..|. ..+.++++..+.+++++.+.    +++++..++.++..+|+++.|.
T Consensus       141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            445555554444 34455555555555554332    2455555555555555555543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.44  E-value=0.74  Score=28.39  Aligned_cols=29  Identities=21%  Similarity=0.088  Sum_probs=25.3

Q ss_pred             HHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562           71 DICNRAFCYSQLELHKHVIRDCDKALQLD   99 (640)
Q Consensus        71 ~~~~~A~~~~~~g~~~~Ai~~~~~al~~~   99 (640)
                      +|..+|.+-+..++|++|+.++++||++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            46778888899999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=89.37  E-value=4.8  Score=29.49  Aligned_cols=60  Identities=7%  Similarity=0.030  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHccCHHHHHHHHHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---GRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---~la~~~~~~g~~~~A~~~~~~al  442 (640)
                      -.+..|.-++...+.++|+..+.++++..++.+..+.   .+..+|...|+|.+++.+..+-+
T Consensus         8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777777788777777777666554443   34455666777777666655444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.25  E-value=0.73  Score=25.57  Aligned_cols=23  Identities=22%  Similarity=0.056  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHH
Q 006562          587 AYHLRGLLLHGLGQHKKAIKDLS  609 (640)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~  609 (640)
                      +...+|.++...|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34455555555555555555443

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=89.22  E-value=19  Score=33.72  Aligned_cols=53  Identities=11%  Similarity=0.036  Sum_probs=35.9

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHH
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISD  437 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~  437 (640)
                      +.+|......+++++|+..|.+++.....        ...+...++.+|...|++..--+.
T Consensus         7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~   67 (421)
T COG5159           7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT   67 (421)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence            56677777888888888888888765211        234566777777777776654333

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=88.98  E-value=22  Score=34.04  Aligned_cols=113  Identities=18%  Similarity=0.084  Sum_probs=55.2

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI  469 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  469 (640)
                      ...+..+..+-++....+++++|..+.++..++.--.  .-..+|...++++++...    ..+...+.....|...+|.
T Consensus       193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~~da~  266 (556)
T KOG3807|consen  193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQHEAQ  266 (556)
T ss_pred             HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccchhhh
Confidence            3444555566666666666666666666665554322  224456666666655421    1111222222222211111


Q ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006562          470 QDLSKALEFEPN-SADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (640)
Q Consensus       470 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  514 (640)
                            .+.+-+ ...+...++.|..++|+..+|++.++...+..|
T Consensus       267 ------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p  306 (556)
T KOG3807|consen  267 ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP  306 (556)
T ss_pred             ------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence                  111111 122344566677777777777777776666555

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=88.96  E-value=21  Score=33.82  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=14.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          482 SADILHERGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~  506 (640)
                      ++..+..+|..+++.|++.+|..+|
T Consensus        89 dp~LH~~~a~~~~~e~~~~~A~~Hf  113 (260)
T PF04190_consen   89 DPELHHLLAEKLWKEGNYYEAERHF  113 (260)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHH
Confidence            4556666666666666666655554

; PDB: 3LKU_E 2WPV_G.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=88.35  E-value=2.7  Score=39.26  Aligned_cols=57  Identities=23%  Similarity=0.196  Sum_probs=53.3

Q ss_pred             HhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562           73 CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG  129 (640)
Q Consensus        73 ~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~a  129 (640)
                      ...|..|...|.+.+|+..+++++++||=+-..+..+-.+|..+|+--+|.+.|++-
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            567788999999999999999999999999999999999999999999999988887

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.88  E-value=3.3  Score=39.16  Aligned_cols=63  Identities=21%  Similarity=0.160  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      ..++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|+++-.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            445555666666666666666666666666666666666666666666666666666665544

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=87.36  E-value=2.4  Score=25.81  Aligned_cols=6  Identities=17%  Similarity=0.296  Sum_probs=1.8

Q ss_pred             cCHHHH
Q 006562          429 RELEAA  434 (640)
Q Consensus       429 g~~~~A  434 (640)
                      |++++|
T Consensus        15 ~ky~~A   20 (36)
T PF07720_consen   15 GKYDEA   20 (36)
T ss_dssp             T-HHHH
T ss_pred             hhHHHH
Confidence            333333

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.23  E-value=13  Score=37.60  Aligned_cols=62  Identities=16%  Similarity=0.197  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HH--HHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE--AL--IGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~--~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      .....+..++..++|..|..++..+...-|....  .+  ...|..++..-++.+|.+.++..+..
T Consensus       133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~  198 (379)
T PF09670_consen  133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR  198 (379)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3456678889999999999999999986333333  33  33455667788999999999998765

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.96  E-value=2.4  Score=42.52  Aligned_cols=87  Identities=11%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHH-------cccCchhH-------HHhHHHHHHhhhcHHHHHHHHHHHHHcC---------
Q 006562           43 LAKLCSLRNWSKAIRILDSLL-------AQSYEIQD-------ICNRAFCYSQLELHKHVIRDCDKALQLD---------   99 (640)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai-------~~~~~~~~-------~~~~A~~~~~~g~~~~Ai~~~~~al~~~---------   99 (640)
                      |..+..+.+..+-++.+.+..       +....+..       ...+.+.+.-+|+|..|+..++. |+++         
T Consensus        82 L~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~  160 (404)
T PF10255_consen   82 LYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVP  160 (404)
T ss_pred             HHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCc
Confidence            445556666666666665532       11222222       24677888999999999998764 3333         


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (640)
Q Consensus       100 P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al  130 (640)
                      +-++..+|..|-+|+.+++|.+|++.|...+
T Consensus       161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  161 ACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             chheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356689999999999999999999999995

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=86.82  E-value=2.7  Score=25.58  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHH--HHHHhCCC
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFD--QILKEDPM  413 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~--~~l~~~~~  413 (640)
                      +.++.+|..+...|++++|+..|+  -+...++.
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence            567888999999999999999944  77766664

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.63  E-value=22  Score=31.78  Aligned_cols=77  Identities=18%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             HHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhcCCHH
Q 006562          426 AFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN----SADILHERGIVNFKFKDFN  500 (640)
Q Consensus       426 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~~~~~  500 (640)
                      +..-.-+.|...|-++-... -++++..+.+|..|. ..+.++++..+.+++++.+.    +++++..++.++...|+++
T Consensus       117 Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  117 WSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            33333455666665543221 135667777777665 56778888888888877543    3778888888888888888


Q ss_pred             HHH
Q 006562          501 AAV  503 (640)
Q Consensus       501 ~A~  503 (640)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            774

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=86.61  E-value=32  Score=33.23  Aligned_cols=188  Identities=11%  Similarity=0.008  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-ADILHERGIVNFKFKDFNAAVEDLSA  508 (640)
Q Consensus       430 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~  508 (640)
                      --++|+..-.-...+.|..++++-.++.+.++..+..         -..+++- +..+..--...+..+-.+++...+.+
T Consensus       211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~---------AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r  281 (415)
T COG4941         211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRP---------ARFDADGEPVLLEDQDRSLWDRALIDEGLALLDR  281 (415)
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh---------hccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence            3567888877788888888888777776665432211         1111110 00011111112233345677777777


Q ss_pred             HHHhCC-CcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--
Q 006562          509 CVKLDK-ENKSAYTYLGLALSS-----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI--  580 (640)
Q Consensus       509 al~~~~-~~~~~~~~la~~~~~-----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--  580 (640)
                      ++.... .-....-.++-++..     .-+|..-..+|.-.....|+ |.+-.+.+....+..-.+.++...+-....  
T Consensus       282 A~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~  360 (415)
T COG4941         282 ALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPR  360 (415)
T ss_pred             HHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccc
Confidence            776643 222333333333333     23565555566655555554 555556666655555567777776665543  


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562          581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       581 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (640)
                      -..+...+...|.++.+.|+.++|...|++++.+.++..+..+....
T Consensus       361 L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r  407 (415)
T COG4941         361 LDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQR  407 (415)
T ss_pred             cccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            22444567778899999999999999999999998887765554433

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.98  E-value=64  Score=36.16  Aligned_cols=58  Identities=19%  Similarity=0.092  Sum_probs=40.5

Q ss_pred             HHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchH----HHHHH-HHHHHHcCCHHHHHHHHHHH
Q 006562           72 ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ----AYILK-GCAFSALGRKEEALSVWEKG  129 (640)
Q Consensus        72 ~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~----a~~~~-g~~y~~~g~~~~A~~~~~~a  129 (640)
                      +-..-..+++...|++|+..++-...-+|.-..    ...+. |.-++..|+|++|+..|+++
T Consensus       310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~  372 (877)
T KOG2063|consen  310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKS  372 (877)
T ss_pred             hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh
Confidence            344555667777788888888777766665322    12222 66788999999999999998

>PRK11619 lytic murein transglycosylase; Provisional

Probab=85.70  E-value=60  Score=35.52  Aligned_cols=123  Identities=11%  Similarity=-0.009  Sum_probs=77.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      +..-....+.+.|...+.+......-+.    .++..+|.-....+..++|...+..+.... .+.........+....+
T Consensus       248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~  326 (644)
T PRK11619        248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTG  326 (644)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHcc
Confidence            3334455567778887776544443222    233334443333332567777777654332 23333444444555788


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      +++.+...+...-..........+.+|..+...|+.++|..+|+++..
T Consensus       327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            998888777775444445677888999998889999999999999854

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.72  E-value=1.9  Score=27.69  Aligned_cols=25  Identities=8%  Similarity=0.041  Sum_probs=20.6

Q ss_pred             HhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562           73 CNRAFCYSQLELHKHVIRDCDKALQ   97 (640)
Q Consensus        73 ~~~A~~~~~~g~~~~Ai~~~~~al~   97 (640)
                      +++|.+|+.+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888885

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=84.46  E-value=68  Score=35.12  Aligned_cols=245  Identities=8%  Similarity=-0.026  Sum_probs=152.2

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      .++.+...+..+-.+++..|++++-...-.++.++.|..+..|..-..-..   ..++-.++...|++++.-. .+...|
T Consensus       108 i~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-~~v~iw  186 (881)
T KOG0128|consen  108 INSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-NSVPIW  186 (881)
T ss_pred             ccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-ccchHH
Confidence            455556677777888899999988888878888888888888766554333   2367778888899988543 344444


Q ss_pred             HHHHHHH-------HHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-
Q 006562          453 KRRGQAR-------AALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-  517 (640)
Q Consensus       453 ~~la~~~-------~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-  517 (640)
                      ...+...       ...++++.-...|.+++..-...       ...+..+...|...-..++-+.++...+... -+. 
T Consensus       187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~~  265 (881)
T KOG0128|consen  187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDED  265 (881)
T ss_pred             HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chhh
Confidence            4444333       44567777888888887653322       3345555555555555566677777666553 221 


Q ss_pred             ---HHHHHHH---HHHHHcCCHHHHHHH-------HHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          518 ---SAYTYLG---LALSSIGEYKKAEEA-------HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       518 ---~~~~~la---~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                         ..|....   .......+++.|..-       +++.++..|.....|..+.......|+.-.-...+++++...+.+
T Consensus       266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~  345 (881)
T KOG0128|consen  266 TRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD  345 (881)
T ss_pred             hhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc
Confidence               1111111   112223445555444       334444455555667777777788898888888889998887777


Q ss_pred             hHHHHHHHHHHH-hcCCHHHHHHHHHHhhccCCCCHHHH
Q 006562          585 SKAYHLRGLLLH-GLGQHKKAIKDLSSGLGIDPSNIECL  622 (640)
Q Consensus       585 ~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~  622 (640)
                      ...|...+...- .++-.+.+...+-+++...|-..++|
T Consensus       346 ~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~  384 (881)
T KOG0128|consen  346 RALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLW  384 (881)
T ss_pred             HHHHhhhhhhcccccccccccccccchhhcCCchHHHHH
Confidence            777777765542 34444555555666666666544443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.44  E-value=26  Score=38.17  Aligned_cols=203  Identities=16%  Similarity=0.054  Sum_probs=106.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          388 GIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (640)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  466 (640)
                      -..+.+..-|+-|+.+.+.- ..+++ -..++...|..++..|++++|...|-+.+..-.. +.+.    .-+.......
T Consensus       341 L~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-s~Vi----~kfLdaq~Ik  414 (933)
T KOG2114|consen  341 LDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-SEVI----KKFLDAQRIK  414 (933)
T ss_pred             HHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-HHHH----HHhcCHHHHH
Confidence            34566667777777765542 12222 2456667778888888888888888887754221 1111    1123333444


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCCHHHHHHHHHHH
Q 006562          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY---TYLGLALSSIGEYKKAEEAHLKA  543 (640)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~a  543 (640)
                      +-..+++.+.+..-.+.+-...+-.+|.++++.++-.++.++.    + .....   -..-.++...+-+++|.....+.
T Consensus       415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~----~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~  489 (933)
T KOG2114|consen  415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKC----D-KGEWFFDVETALEILRKSNYLDEAELLATKF  489 (933)
T ss_pred             HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcC----C-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence            4455666666555445555556777888888877655555442    2 11111   11122333333344444333332


Q ss_pred             HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       544 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      -.    +.   ..+-.++...|+|++|+.++...   .|+. .......|..+... .+++-...+-+..
T Consensus       490 ~~----he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h-~P~~t~~ili~~~  548 (933)
T KOG2114|consen  490 KK----HE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEH-DPEETMKILIELI  548 (933)
T ss_pred             cc----CH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHHH
Confidence            11    11   22334566788899999888754   2221 23445566666553 3444444444433

>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]

Probab=83.64  E-value=74  Score=34.88  Aligned_cols=233  Identities=10%  Similarity=-0.042  Sum_probs=153.9

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH---HcCCHHHHHHH
Q 006562          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---ALGESVEAIQD  471 (640)
Q Consensus       395 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~~~~~~A~~~  471 (640)
                      +.-+.-+..++.-+..++.+...+..+-.+++..|++++-...-..+.++.|..+..|.....-..   ..+.-.++...
T Consensus        93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~  172 (881)
T KOG0128|consen   93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL  172 (881)
T ss_pred             ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence            334445566666677788888888899999999999999888888888888988888876654333   23667788888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHH-------HhcCCHHHHHHHHHHHHHhCCC-------cHHHHHHHHHHHHHcCCHHHHH
Q 006562          472 LSKALEFEPNSADILHERGIVN-------FKFKDFNAAVEDLSACVKLDKE-------NKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~-------~~~~~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      |++++...- .+.+|...+...       ...++++.....+.+++..-..       ....+..+..+|...-..++-+
T Consensus       173 ~ekal~dy~-~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~  251 (881)
T KOG0128|consen  173 FEKALGDYN-SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI  251 (881)
T ss_pred             HHHHhcccc-cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            998886542 344454444443       4456778888888888765321       2355555666666666667777


Q ss_pred             HHHHHHHccCcccH----HHHHHHH--HH-HHHhcCHHHHHHH-------HHHHHHhCCCChHHHHHHHHHHHhcCCHHH
Q 006562          538 EAHLKAIQLDRNFL----EAWGHLT--QF-YQDLANSEKALEC-------LQQVLYIDKRFSKAYHLRGLLLHGLGQHKK  603 (640)
Q Consensus       538 ~~~~~a~~~~~~~~----~~~~~la--~~-~~~~g~~~~A~~~-------~~~al~~~~~~~~~~~~la~~~~~~g~~~~  603 (640)
                      .++...+... -+.    ..|....  .+ .....+++.|..-       +++.+...|.....|..+-......|.+-.
T Consensus       252 a~~~~el~~~-~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~r  330 (881)
T KOG0128|consen  252 ALFVRELKQP-LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVR  330 (881)
T ss_pred             HHHHHHHhcc-chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchH
Confidence            8877777653 221    1111111  11 1223445555444       444444555555667777777888999988


Q ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          604 AIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       604 A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      -...+++++.-.+.+.+.|...+...
T Consensus       331 i~l~~eR~~~E~~~~~~~wi~y~~~~  356 (881)
T KOG0128|consen  331 IQLIEERAVAEMVLDRALWIGYGVYL  356 (881)
T ss_pred             HHHHHHHHHHhccccHHHHhhhhhhc
Confidence            88899999888888788887766543

>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]

Probab=83.18  E-value=46  Score=32.23  Aligned_cols=165  Identities=16%  Similarity=0.133  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHh----CC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCc--HHH
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKE----DP--MYPEALIGRGTARAFQRELEAAISDFTEAIQSN-----PSA--GEA  451 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~----~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~--~~~  451 (640)
                      ..+...|+..++|.+|+......++.    +.  .-.+++..-..+|+...+..+|...+..+-...     |..  +..
T Consensus       132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l  211 (411)
T KOG1463|consen  132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL  211 (411)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence            35678899999999999988777642    22  234667777888899999888888877665432     211  122


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH---HHHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCcHHHHHHH
Q 006562          452 WKRRGQARAALGESVEAIQDLSKALEFEPN---SAD---ILHERGIVNFKFKDFNAAVE--DLSACVKLDKENKSAYTYL  523 (640)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~---~~~~la~~~~~~~~~~~A~~--~~~~al~~~~~~~~~~~~l  523 (640)
                      -..-|.++..-.+|..|..+|-.+++-...   +..   ++..+-.+-...+..++--.  .-..+++....+..+....
T Consensus       212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav  291 (411)
T KOG1463|consen  212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV  291 (411)
T ss_pred             HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence            233456666668999999999998875421   222   23333334444555554433  3445666666777888888


Q ss_pred             HHHHHH--cCCHHHHHHHHHHHHccCcc
Q 006562          524 GLALSS--IGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       524 a~~~~~--~g~~~~A~~~~~~a~~~~~~  549 (640)
                      +.++..  +.+|..|+.-|..-+..+|-
T Consensus       292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i  319 (411)
T KOG1463|consen  292 AEAFGNRSLKDFEKALADYKKELAEDPI  319 (411)
T ss_pred             HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence            877765  46788888888877766553

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.89  E-value=5.9  Score=38.05  Aligned_cols=62  Identities=16%  Similarity=0.044  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (640)
                      |..+|.+|..+.|.....+..+|.++...|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555554332234444444444443

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=82.85  E-value=36  Score=31.72  Aligned_cols=28  Identities=14%  Similarity=0.177  Sum_probs=14.3

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562          419 IGRGTARAFQRELEAAISDFTEAIQSNP  446 (640)
Q Consensus       419 ~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (640)
                      ..+|.+..+.|+|++.+.++.+++..+|
T Consensus         5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~   32 (236)
T PF00244_consen    5 IYLAKLAEQAERYDDMVEYMKQLIEMNP   32 (236)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHccCC
Confidence            3445555555555555555555555444

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>PF13041 PPR_2: PPR repeat family

Probab=82.60  E-value=4.5  Score=26.68  Aligned_cols=33  Identities=6%  Similarity=0.220  Sum_probs=22.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc--CchhHHHh
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQS--YEIQDICN   74 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~--~~~~~~~~   74 (640)
                      -+.-+++.|++++|...|++..+.+  |+...|..
T Consensus         9 li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~   43 (50)
T PF13041_consen    9 LISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNI   43 (50)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence            3455677777777777777777666  66555543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=81.95  E-value=6.9  Score=37.60  Aligned_cols=62  Identities=19%  Similarity=0.091  Sum_probs=48.6

Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (640)
                      |..+|.+|+.+.|.+...|+.+|.++...|+.=.|+-+|-+++-.....+.+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67888888888898888899999888888888888888888886655567778888877776

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=81.81  E-value=86  Score=34.34  Aligned_cols=178  Identities=8%  Similarity=-0.096  Sum_probs=94.6

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (640)
                      .....+.+.|...+.+.....+-+.    .++..+|.-....+...+|..++..+.... .+....-....+....++++
T Consensus       251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~  329 (644)
T PRK11619        251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRR  329 (644)
T ss_pred             HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHH
Confidence            3445566777777766544333221    123333333333322455555555543322 12233333344444666776


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------------CCC--h------HH
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID-------------------KRF--S------KA  587 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------------------~~~--~------~~  587 (640)
                      .+...+...-..........+.+|+.+...|+.++|..+|+++....                   +..  .      ..
T Consensus       330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~  409 (644)
T PRK11619        330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGP  409 (644)
T ss_pred             HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccCh
Confidence            66666655433333445666677777666777777777776653210                   000  0      12


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ....+..+...|....|...+..++..  .+..-...++.+....|.++.|+
T Consensus       410 ~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai  459 (644)
T PRK11619        410 EMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSV  459 (644)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHH
Confidence            234566677778888888888777664  23455566667666777665543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.50  E-value=7.4  Score=36.54  Aligned_cols=58  Identities=21%  Similarity=0.155  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA  475 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  475 (640)
                      +...+..|...|.+.+|+.+.++++..+|-+...+..+-.++..+|+--.++..|++.
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3344555566666666666666666666666666666666666666655555555544

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []

Probab=81.23  E-value=58  Score=33.47  Aligned_cols=29  Identities=14%  Similarity=0.058  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSN  445 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~  445 (640)
                      ....+|..++..|+|+.|...|+-+.+-.
T Consensus       210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df  238 (414)
T PF12739_consen  210 QMRRLADLAFMLRDYELAYSTYRLLKKDF  238 (414)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence            34557777777777777777777766543

Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=81.09  E-value=54  Score=31.55  Aligned_cols=124  Identities=13%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cH
Q 006562          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-AG  449 (640)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~  449 (640)
                      ......+|.-+.++..+|.--  ..-..+|..+|+++++..    +..+.........|...+|.      .+.+.+ ..
T Consensus       208 ~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~----e~~yr~sqq~qh~~~~~da~------~rRDtnvl~  275 (556)
T KOG3807|consen  208 YQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG----ETIYRQSQQCQHQSPQHEAQ------LRRDTNVLV  275 (556)
T ss_pred             HHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH----HHHHhhHHHHhhhccchhhh------hhcccchhh
Confidence            344556666666776666442  234667888888887642    22222222222222222221      111111 12


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~  506 (640)
                      .+-..++.|..++|+..+|++.++...+..|-.  ..++-++...+....-|.+....+
T Consensus       276 YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL  334 (556)
T KOG3807|consen  276 YIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL  334 (556)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            234568888888999999999998888877732  123444445555544444443333

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.69  E-value=8.9  Score=37.80  Aligned_cols=88  Identities=14%  Similarity=0.011  Sum_probs=67.2

Q ss_pred             HHHHHH-hcCCHHHHHHHHHHHHcccCch----hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC-------C-CchHHHHH
Q 006562           42 ELAKLC-SLRNWSKAIRILDSLLAQSYEI----QDICNRAFCYSQLELHKHVIRDCDKALQLD-------P-TLLQAYIL  108 (640)
Q Consensus        42 ~~~~~~-~~~~y~~Ai~~y~~ai~~~~~~----~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~-------P-~~~~a~~~  108 (640)
                      .++.+| ..|+++.|+.+|.++-.-..+.    ..+.|.-.+-+-+|+|.+......+|..--       + -.++....
T Consensus       155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~  234 (466)
T KOG0686|consen  155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA  234 (466)
T ss_pred             HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence            344444 6999999999999976655222    225677778888999999999988887751       0 12447778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 006562          109 KGCAFSALGRKEEALSVWEKG  129 (640)
Q Consensus       109 ~g~~y~~~g~~~~A~~~~~~a  129 (640)
                      .|.+.+.+++|..|.+.|-.+
T Consensus       235 agLa~L~lkkyk~aa~~fL~~  255 (466)
T KOG0686|consen  235 AGLANLLLKKYKSAAKYFLLA  255 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC
Confidence            899999999999999999888

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.09  E-value=3.4  Score=37.79  Aligned_cols=92  Identities=14%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHccc-CchhH------------HHhHHHHHHhhhcH-HHHH-HHHHHHHH-cC-CCchHH--
Q 006562           45 KLCSLRNWSKAIRILDSLLAQS-YEIQD------------ICNRAFCYSQLELH-KHVI-RDCDKALQ-LD-PTLLQA--  105 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~-~~~~~------------~~~~A~~~~~~g~~-~~Ai-~~~~~al~-~~-P~~~~a--  105 (640)
                      +.|--|+|+.|++...-||+.+ +.|.-            .+.-|......|+- +-.+ ..+..... .| |+-+.+  
T Consensus        92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl  171 (230)
T PHA02537         92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL  171 (230)
T ss_pred             eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence            5688899999999999999998 44433            23455555555542 1222 12222221 11 555554  


Q ss_pred             HHHHHHHHH---------HcCCHHHHHHHHHHHHhhccCC
Q 006562          106 YILKGCAFS---------ALGRKEEALSVWEKGYEHALHQ  136 (640)
Q Consensus       106 ~~~~g~~y~---------~~g~~~~A~~~~~~al~~~~~~  136 (640)
                      |-..|..++         ..++...|...+++|+.++|..
T Consensus       172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            445555553         4568889999999999888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	640
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-13
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		9e-08
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		1e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		3e-10
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		6e-08
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		9e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-07
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-09
3vtx_A	184	Crystal Structure Of Mama Protein Length = 184		2e-07
1w3b_A	388	The Superhelical Tpr Domain Of O-Linked Glcnac Tran		2e-08
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		5e-08
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-05
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		8e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		6e-05
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		2e-04
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		3e-04
2avp_A	70	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		3e-04

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E     
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           ++LD  +  A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 62  LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 121
Query: 570 ALECLQQVLYIDKR 583
           A+E  Q+ L +D R
Sbjct: 122 AIEYYQKALELDPR 135

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%)
Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+  +  G   +K  D++ A+E     ++LD  +  A+  LG A    G+Y +A E + K
Sbjct: 1   AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXXXK 602
           A++LD    EAW +L   Y    + ++A+E  Q+ L +D R ++A+              
Sbjct: 61  ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 603 KAIKDLSSGLGIDP 616
           +AI+     L +DP
Sbjct: 121 EAIEYYQKALELDP 134

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L +D 
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 583 RFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           R ++A+              +AI+     L +DP + E  Y   + Y+  G+Y EA+
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI 123

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/107 (36%), Positives = 59/107 (55%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+  LG A    G+Y +A E + KA++LD N  EA
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/107 (32%), Positives = 58/107 (54%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           NSA+  +  G   +K  D++ A+E     ++LD  N  A+  LG A    G+Y +A E +
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
            KA++LD N  EAW +L   Y    + ++A+E  Q+ L +D   ++A
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 51/102 (50%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70
Query: 579 YIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSNIE 620
            +D   ++A+              +AI+     L +DP+N E
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAWK  G A    G+  +AI+   KALE +PN+A   +  G   +K  D+  A+E  
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++LD  N  A+   G A    G+Y+KA E + KA++LD N  +A
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           NSA+     G   +K  D+  A+E     ++LD  N SA+  LG A    G+Y+KA E +
Sbjct: 7   NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
            KA++LD N  +AW      Y    + +KA+E  Q+ L +D   +KA
Sbjct: 67  QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKA 113

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/100 (34%), Positives = 52/100 (52%)
Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y+KA E + KA++LD N   AW +L   Y    + +KA+E  Q+ L
Sbjct: 11  AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 579 YIDKRFSKAYXXXXXXXXXXXXXKKAIKDLSSGLGIDPSN 618
            +D   +KA+             +KAI+D    L +DP+N
Sbjct: 71  ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 70/141 (49%)
Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           G  +  + + + AI  + + ++++P+  E   + G+    +G   +AI+ L K +  +  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA+  +  G  NF   +  AA++ L   + L+     AY  LGL   S+GE+ KA EA+ 
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 542 KAIQLDRNFLEAWGHLTQFYQ 562
           K I +   F+ A+  +   Y+
Sbjct: 132 KTISIKPGFIRAYQSIGLAYE 152

>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  +   G+   AI+   K L+ +PN+ + L + G         N A+E L   V LD  
Sbjct: 12  GDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT 71
Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           +  AY  LG A   I E + A +A  +AI L+  + +A+  L   Y  +   +KA+E  +
Sbjct: 72  SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYE 131
Query: 576 QVLYIDKRFSKAY 588
           + + I   F +AY
Sbjct: 132 KTISIKPGFIRAY 144

>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 18/226 (7%)
Query: 427 FQ-RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           FQ R L+ +    T AI+ NP   EA+   G      G+  EAI+    AL  +P+  D 
Sbjct: 44  FQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID- 102
Query: 486 LHERGIVNFKFK-----DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
               G +N         D   AV+   + ++ + +     + LG  L ++G  ++A+  +
Sbjct: 103 ----GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158
Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYXXXXXXXXXXXX 600
           LKAI+   NF  AW +L   +        A+   ++ + +D  F  AY            
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218
Query: 601 XKKAIKDLSSGLGIDPS------NIECLYLRASCYH-AIGEYREAV 639
             +A+      L + P+      N+ C+Y        AI  YR A+
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/107 (34%), Positives = 56/107 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE  PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
              ++L   N  A+  LG A    G+Y +A E + KA++L  N  EA
Sbjct: 67  QKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 113

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 37/60 (61%)
Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A S+L +  EA++ ++K  E
Sbjct: 49  FCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALE 108

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL 527
           A+    KA+E  P +A     R     K  ++  AV+D    + +D     AY  +GLAL
Sbjct: 31  AVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90
Query: 528 SSIGEYKKAEEAHLKAIQLD 547
           SS+ ++ +A   + KA++LD
Sbjct: 91  SSLNKHVEAVAYYKKALELD 110

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP      K +G      G+  +A++  ++A++  P  A +   R     K  +F  A++
Sbjct: 12  NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 72  DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 43/85 (50%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           ++ EAW   G A    G+  EAI+   KALE +PN+A+  +  G   +K  D++ A+E  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 507 SACVKLDKENKSAYTYLGLALSSIG 531
              ++LD  N  A   LG A    G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   +  K +G      G+   A++  ++A++ +P +A +   R     K  +F  A++
Sbjct: 9   NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALD 68
Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           D   C++LD +    Y      L ++ E+ KA+ A+  A+Q+D
Sbjct: 69  DCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201
Query: 98  LDPTLLQAYILKGCA 112
            DP  ++AYI K  A
Sbjct: 202 KDPNFVRAYIRKATA 216

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQ 97
           AR+E  +  +  +W  A++    ++ ++ E  +   NRA   ++L      I DC+KA++
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
Query: 98  LDPTLLQAYILKGCA 112
            DP  ++AYI K  A
Sbjct: 67  KDPNFVRAYIRKATA 81

>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+  +  G   +K  D++ A+E  
Sbjct: 1   GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 507 SACVKLD 513
              ++LD
Sbjct: 61  QKALELD 67

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	640
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-55
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-53
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-52
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-54
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-53
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-53
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-53
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-52
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-49
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-47
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-44
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-27
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-25
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-50
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-34
2gw1_A	514	Mitochondrial precursor proteins import receptor;	7e-28
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-06
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-50
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-44
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	8e-41
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-25
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	7e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-44
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-43
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	7e-08
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-43
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-41
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-34
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-11
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-48
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-40
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-48
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-46
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-41
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-37
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-32
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	8e-06
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-46
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-44
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-38
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-04
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	5e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-46
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-44
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-20
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	9e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	6e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-44
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-41
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-40
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-37
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-26
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	8e-42
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-40
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-29
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-25
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	4e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-41
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-41
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-40
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-40
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-39
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-38
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-38
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-37
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-35
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-34
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-33
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-28
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-27
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-41
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-38
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-26
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-40
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-26
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	4e-24
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	5e-40
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-36
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	9e-32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-30
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-28
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-19
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-33
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-29
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-23
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-15
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-29
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-27
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	7e-23
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-18
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	6e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	5e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-32
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-22
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-20
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-31
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-29
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	6e-20
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-30
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-29
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-21
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	6e-17
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	8e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	7e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-28
4g1t_A	472	Interferon-induced protein with tetratricopeptide	7e-27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-24
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-17
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-26
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-21
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	6e-25
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-24
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-23
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-17
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	7e-04
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-23
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	5e-14
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	4e-09
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	8e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-22
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	9e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-19
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-18
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-14
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-11
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	1e-07
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-21
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-20
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	3e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-21
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-20
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-19
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	1e-06
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	4e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-21
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-20
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-19
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-15
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-13
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	4e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	9e-19
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-10
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-18
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-15
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	6e-14
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-12
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-18
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-17
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-16
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	9e-15
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-08
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-18
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	6e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-17
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	8e-16
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	6e-15
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-11
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	6e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	8e-17
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	5e-09
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	8e-15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-08
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	6e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	9e-05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	6e-13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-09
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	5e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	6e-15
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-14
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	1e-08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-05
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-16
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-14
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-13
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	5e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	6e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-16
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-14
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-09
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	4e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-14
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	1e-13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-12
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	7e-16
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	8e-12
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-08
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	6e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	8e-16
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-15
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	3e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-06
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	1e-15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-13
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-10
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-14
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-13
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	8e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-04
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	1e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	7e-12
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-11
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	2e-05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-15
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	5e-14
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	4e-12
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	6e-10
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	1e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-15
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	4e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	7e-13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	9e-11
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-15
2kat_A	115	Uncharacterized protein; NESG, structure, structur	3e-14
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-12
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-07
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	4e-14
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-13
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	1e-12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-10
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-14
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-13
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	8e-11
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	6e-13
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-04
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	3e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	6e-14
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-12
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-11
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	9e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-10
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	3e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	8e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	7e-13
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-10
3k9i_A	117	BH0479 protein; putative protein binding protein,	8e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	8e-10
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	4e-08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	3e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	4e-11
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-07
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	1e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	9e-12
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-08
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	1e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	2e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	8e-05
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-11
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-10
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	1e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	5e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-08
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	8e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	1e-06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	3e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-10
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-08
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	6e-10
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-04
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	3e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	8e-10
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	3e-07
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-09
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-06
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	4e-05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	3e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-09
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-06
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	2e-04
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	4e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-09
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-08
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	5e-07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	3e-04
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-09
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-08
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	2e-07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	1e-04
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	3e-06
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	4e-05
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-08
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	2e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	8e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-06
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	4e-08
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-07
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	7e-06
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	3e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	8e-08
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-06
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	1e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	3e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	7e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	1e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	5e-05
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	5e-04

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  191 bits (489), Expect = 3e-55
 Identities = 54/255 (21%), Positives = 101/255 (39%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           NP   EA+   G      G+  EAI+    AL  +P+  D             D   AV+
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
              + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +   
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A+   ++ + +D  F  AY   G +L       +A+      L + P++      
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 625 RASCYHAIGEYREAV 639
            A  Y+  G    A+
Sbjct: 243 LACVYYEQGLIDLAI 257

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  186 bits (475), Expect = 3e-53
 Identities = 54/259 (20%), Positives = 101/259 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++   A V  G    A+  +   L+ +P         G        LE A + + +
Sbjct: 101 IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  + + F+
Sbjct: 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      + L   +   +  L       G    A + + +AI+L  +F +A+ +L   
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  +  +A +C    L +    + + +    +    G  ++A++     L + P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 621 CLYLRASCYHAIGEYREAV 639
                AS     G+ +EA+
Sbjct: 341 AHSNLASVLQQQGKLQEAL 359

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  186 bits (474), Expect = 3e-53
 Identities = 61/254 (24%), Positives = 98/254 (38%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           + G      G+   AI  +   L+  P + +  I    A     ++E A+  +  A+Q N
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P         G    ALG   EA     KA+E +PN A      G V     +   A+  
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
               V LD     AY  LG  L     + +A  A+L+A+ L  N     G+L   Y +  
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             + A++  ++ + +   F  AY      L   G   +A    ++ L + P++ + L   
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311

Query: 626 ASCYHAIGEYREAV 639
           A+     G   EAV
Sbjct: 312 ANIKREQGNIEEAV 325

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  185 bits (472), Expect = 7e-53
 Identities = 45/253 (17%), Positives = 92/253 (36%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                    +   +       +K++P+  EA    G     + +L+ AI  +  A++  P
Sbjct: 39  LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              + +     A  A G+   A+Q    AL++ P+   +  + G +         A    
Sbjct: 99  DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++       A++ LG   ++ GE   A     KA+ LD NFL+A+ +L    ++   
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 218

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++A+    + L +    +  +     + +  G    AI      + + P   +     A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 627 SCYHAIGEYREAV 639
           +     G   EA 
Sbjct: 279 NALKEKGSVAEAE 291

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  183 bits (466), Expect = 6e-52
 Identities = 47/254 (18%), Positives = 99/254 (38%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
              R   G      G+   A + + + ++  P +  A    G     Q E+  AI  F +
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A+  +P+  +A+   G           A+    +AL   PN A +      V ++    +
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A++     ++L      AY  L  AL   G   +AE+ +  A++L     ++  +L   
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            ++  N E+A+   ++ L +   F+ A+     +L   G+ ++A+      + I P+  +
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 621 CLYLRASCYHAIGE 634
                 +    + +
Sbjct: 375 AYSNMGNTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score =  158 bits (403), Expect = 4e-43
 Identities = 36/222 (16%), Positives = 75/222 (33%)

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
            +          + EAA     +  +  P                     +    + A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 478 FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE 537
             P  A+     G V  +      A+E     ++L  +    Y  L  AL + G+ + A 
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597
           +A++ A+Q + +       L    + L   E+A  C  + +     F+ A+   G + + 
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
            G+   AI      + +DP+ ++      +       +  AV
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 223

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  A++  +  L          +       L   +       KA++  P    A+  
Sbjct: 121 VQAYVSALQY-NPDLYCVR-----SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN 174

Query: 109 KGCAFSALGRKEEALSVWEK 128
            GC F+A G    A+  +EK
Sbjct: 175 LGCVFNAQGEIWLAIHHFEK 194

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.6 bits (122), Expect = 8e-07
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + ++  A+R+        Y      N A         +  ++    ALQ +P L      
Sbjct: 87  IEHYRHALRL-KPDFIDGY-----INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSD 140

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G    ALGR EEA + + K
Sbjct: 141 LGNLLKALGRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 50.2 bits (121), Expect = 1e-06
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           S    + AI+  + LLA++Y      N    Y +    +  I     AL+L P  +  YI
Sbjct: 52  SAHFSTLAIKQ-NPLLAEAY-----SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105

Query: 108 LKGCAFSALGRKEEALSVWEK 128
               A  A G  E A+  +  
Sbjct: 106 NLAAALVAAGDMEGAVQAYVS 126

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + +AI +       +Y     CN A    +           + AL+L PT   +   
Sbjct: 257 IDTYRRAIEL-QPHFPDAY-----CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN 310

Query: 109 KGCAFSALGRKEEALSVWEK 128
                   G  EEA+ ++ K
Sbjct: 311 LANIKREQGNIEEAVRLYRK 330

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.1 bits (118), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+R+     A S       N A    +    +  +R   KAL++ P    A+       
Sbjct: 296 TALRL-CPTHADSL-----NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 114 SALGRKEEALSVWEKGYEHAL 134
              G+ +EAL      Y+ A+
Sbjct: 350 QQQGKLQEAL----MHYKEAI 366

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 2/90 (2%)

Query: 41  IELAK-LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +P L +AY   G  +   G+ +EA+  +  
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ +     A  +      N A  Y +  L    I    +A++L P    AY     A 
Sbjct: 228 RALSL-SPNHAVVH-----GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281

Query: 114 SALGRKEEALSVWEK 128
              G   EA   +  
Sbjct: 282 KEKGSVAEAEDCYNT 296

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 48.3 bits (116), Expect = 5e-06
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D     +Y      N      +  +    +    +AL L P     +    C +
Sbjct: 194 KAVTL-DPNFLDAY-----INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247

Query: 114 SALGRKEEALSVWEK 128
              G  + A+  + +
Sbjct: 248 YEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 7e-06
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KAI       A ++      N    ++        I   +KA+ LDP  L AYI  G   
Sbjct: 160 KAIET-QPNFAVAW-----SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL 213

Query: 114 SALGRKEEALSVWEK 128
                 + A++ + +
Sbjct: 214 KEARIFDRAVAAYLR 228

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  191 bits (488), Expect = 4e-54
 Identities = 34/254 (13%), Positives = 68/254 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 179 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 238

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 239 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPV 298

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 299 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALE 358

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 359 TVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 418

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 419 DGGKQALETVQRLL 432

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  189 bits (481), Expect = 4e-53
 Identities = 34/254 (13%), Positives = 70/254 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++A +    +A    
Sbjct: 111 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLT 170

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 171 PEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 230

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A    +   Q L 
Sbjct: 231 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 291 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH 350

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 351 DGGKQALETVQRLL 364

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  188 bits (480), Expect = 5e-53
 Identities = 32/254 (12%), Positives = 65/254 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 333 LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALE 392

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 393 TVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 452

Query: 626 ASCYHAIGEYREAV 639
                A+      +
Sbjct: 453 GGGRPALESIVAQL 466

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  188 bits (479), Expect = 7e-53
 Identities = 32/254 (12%), Positives = 68/254 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +       + + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +   G      +     +  
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L    + A        Q L 
Sbjct: 265 LCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 324

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 325 TVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASN 384

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 385 GGGKQALETVQRLL 398

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  187 bits (476), Expect = 2e-52
 Identities = 31/254 (12%), Positives = 66/254 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 77  SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +     +  
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 196

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 197 LCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 256

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A          L   ++ +  L    G+ P  +  +   
Sbjct: 257 TVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 316

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 317 GGGKQALETVQRLL 330

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  178 bits (454), Expect = 2e-49
 Identities = 36/254 (14%), Positives = 71/254 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            RG     E  +A   ++    L   P    A+      +     ++  +    +A    
Sbjct: 43  KRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 102

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +          +   A +  
Sbjct: 103 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 163 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +   
Sbjct: 223 TVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASN 282

Query: 626 ASCYHAIGEYREAV 639
           +    A+   +  +
Sbjct: 283 SGGKQALETVQRLL 296

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  172 bits (437), Expect = 5e-47
 Identities = 31/233 (13%), Positives = 59/233 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  E   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 426

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
             ++ L  L Q   +  +   A    G     L      +      L    ++
Sbjct: 427 TVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  163 bits (414), Expect = 7e-44
 Identities = 34/253 (13%), Positives = 65/253 (25%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +       +     +   P
Sbjct: 10  WSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A       + AL      +  L +A    P     +          +     +  L
Sbjct: 70  EQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  E   A         ++   +       +A  L    + A        Q L  
Sbjct: 130 CQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALET 189

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +  +   A    G     L   ++ +  L    G+ P  +  +    
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 627 SCYHAIGEYREAV 639
               A+   +  +
Sbjct: 250 GGKQALETVQRLL 262

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  114 bits (288), Expect = 3e-27
 Identities = 26/190 (13%), Positives = 50/190 (26%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
               +   ARA       A +     L+ +      + +RG V               A 
Sbjct: 5   HHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAP 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           + L  E   A         ++   ++      +A  L    + A        Q L   ++
Sbjct: 65  LNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQR 124

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            L  L Q   +      A          L   +  +  L    G+ P  +  +       
Sbjct: 125 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGK 184

Query: 630 HAIGEYREAV 639
            A+   +  +
Sbjct: 185 QALETVQRLL 194

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score =  109 bits (274), Expect = 2e-25
 Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 7/154 (4%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 349 SHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 408

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P     +   G      +   A +  
Sbjct: 409 PEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
               +     +        +AL+ +G  + A +A
Sbjct: 469 PDPALAALTNDH------LVALACLGG-RPALDA 495

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 16/130 (12%), Positives = 35/130 (26%), Gaps = 10/130 (7%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           E+   +     A +       A E     +QLD   L          +    + +A+   
Sbjct: 2   EHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKI-----AKRGGVTAVEAVHAW 56

Query: 575 QQVLY-----IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           +  L      +      A          L   ++ +  L    G+ P  +  +       
Sbjct: 57  RNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK 116

Query: 630 HAIGEYREAV 639
            A+   +  +
Sbjct: 117 QALETVQRLL 126

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 16/110 (14%), Positives = 31/110 (28%), Gaps = 13/110 (11%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +A   L      +       +       LE  + ++    +A  L P  + A       
Sbjct: 368 CQAHG-LTPEQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 113 FSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
             AL   +  L V  +          A+  +   +  LE +   L+    
Sbjct: 422 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 23/126 (18%), Positives = 42/126 (33%), Gaps = 8/126 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 345

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQDR 157
           A         AL   +  L V  +          A+  +   KQ LE ++ LL    Q  
Sbjct: 346 AIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH 405

Query: 158 SVTCEY 163
            +T E 
Sbjct: 406 GLTPEQ 411

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       + +     LE  + ++    +A  L P  + A    G   
Sbjct: 267 QAHG-LTPQQVVAI-----ASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 320

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+      KQ LE ++ LL  
Sbjct: 321 QALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 21/114 (18%), Positives = 36/114 (31%), Gaps = 13/114 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L    +A   L      +       +       LE  + ++    +A  L P  + A   
Sbjct: 92  LPVLCQAHG-LTPQQVVAI-----ASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIAS 145

Query: 109 KGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
                 AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 199

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L      + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 150 KQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV 209

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
           A    G    AL   +  L V  +
Sbjct: 210 AIASNGGGKQALETVQRLLPVLCQ 233

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 13/106 (12%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A   L      +       +       LE  + ++    +A  L P  + A        
Sbjct: 233 QAHG-LTPQQVVAI-----ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK 286

Query: 114 SALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTA 152
            AL   +  L V  +          A+  +   KQ LE ++ LL  
Sbjct: 287 QALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 45.1 bits (107), Expect = 5e-05
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWE 127
           ++  I +       LE  + ++    +A  L P  + A         AL   +  L V  
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 128 K------GYEHALHQSADLKQFLE-LEELLTA 152
           +          A+      KQ LE ++ LL  
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETVQALLPV 162

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  182 bits (463), Expect = 1e-50
 Identities = 46/336 (13%), Positives = 115/336 (34%), Gaps = 16/336 (4%)

Query: 317 SLNDSNTNSESYSKSSISDNKSSDSTESRSKLSF-KWDMLKETSNEAKRNKKFCVTRISK 375
            +        +Y +S+ +D +  +   +  K S   +D   E+  +A R  +  + + ++
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228

Query: 376 SKSISVDFRL---SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE 432
            + +     +     GI +  +     A     + ++  P    + I      A + +  
Sbjct: 229 DEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMADRNDST 287

Query: 433 AAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
              + F +A++ + +    +  RGQ    L    +A +D  KA E +P +     +   +
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
            ++   F+      S   +   E      +    L+   ++ KA + +  AI+L+     
Sbjct: 348 AYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDG 407

Query: 553 AWGHL---------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            +  +               + N  +A   L++   +D R  +A      +        +
Sbjct: 408 IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE 467

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           AI        +  +  E L      +    + ++ +
Sbjct: 468 AITLFEESADLARTMEEKLQAIT--FAEAAKVQQRI 501

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  135 bits (342), Expect = 4e-34
 Identities = 38/281 (13%), Positives = 85/281 (30%), Gaps = 30/281 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  AI  ++  L+     P              +L+  +   T+A++  P
Sbjct: 12  KGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKP 70

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKA---LEFEPNSADILHERGIVNFKFKDFNAAV 503
              +   RR  A   LG+  +A+ DLS      +F   S + + ER +            
Sbjct: 71  DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKF 130

Query: 504 EDLSACVKLDKENKSAYTYLGL-------------ALSSIGEYKKAEEAHLKAIQLDRNF 550
            D+        E  +                    +   I + +     + ++ + D+  
Sbjct: 131 GDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKEL 190

Query: 551 LEAWGHLTQ------------FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
           +    +L +            F +     E+ L+   +   + ++ + +    G+     
Sbjct: 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK 250

Query: 599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                A +D+   + + P  +      A       +  E  
Sbjct: 251 NDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYY 290

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score =  117 bits (294), Expect = 7e-28
 Identities = 33/258 (12%), Positives = 69/258 (26%), Gaps = 29/258 (11%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           E   Y  AL  +G      ++ + AI  +  A++        +        ++G+  + +
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDP-VFYSNLSACYVSVGDLKKVV 59

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA-CVKLDKENKSAYTYL--GLA 526
           +  +KALE +P+ + +L  R   N     F  A+ DLS   +  D  + S    L   L 
Sbjct: 60  EMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLN 119

Query: 527 LSSIGEYKKAEEAHLKAIQLD-------------RNFLEAWGHLTQFYQDLANSEKALEC 573
             ++ + K+       A                 +            +  +   E     
Sbjct: 120 KQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179

Query: 574 LQQVLYIDKRFSKAY------------HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             +    DK                               ++ +   +    +       
Sbjct: 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239

Query: 622 LYLRASCYHAIGEYREAV 639
           L           +   A 
Sbjct: 240 LEHTGIFKFLKNDPLGAH 257

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 18/82 (21%), Positives = 32/82 (39%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
           N + CY  +   K V+    KAL+L P   +  + +  A   LG+  +A+        + 
Sbjct: 44  NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG 103

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
               A ++  LE      A  +
Sbjct: 104 DFNDASIEPMLERNLNKQAMSK 125

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+++ DS  +  Y      +R      L+ +    +D DKA +LDP  +  YI   C  
Sbjct: 295 KALKL-DSNNSSVY-----YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348

Query: 114 SALGRKEEALSVWEK 128
               + ++  +++ +
Sbjct: 349 YRENKFDDCETLFSE 363

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 17/119 (14%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHV---------IRDCDKALQLD 99
           L+ +  AI + ++ L   Y        A    +  L                 +KA +LD
Sbjct: 392 LKQYDLAIEL-ENKLDGIY-----VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA--LHQSADLKQFLELEELLTAAKQD 156
           P   QA I            +EA++++E+  + A  + +      F E  ++    + D
Sbjct: 446 PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 13/83 (15%), Positives = 24/83 (28%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                +   A   +   +     +      A   +            DKAL+LD      
Sbjct: 247 KFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSV 306

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G     L   ++A   ++K
Sbjct: 307 YYHRGQMNFILQNYDQAGKDFDK 329

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            +++ KA   LD      Y        A    +            +A +  P   +    
Sbjct: 324 GKDFDKAKE-LDPENIFPY-----IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +     ++AL  ++ 
Sbjct: 378 FAEILTDKNDFDKALKQYDL 397

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +                D  KA++L P  + +YI      +      E  + ++K
Sbjct: 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDK 295

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  177 bits (450), Expect = 4e-50
 Identities = 56/286 (19%), Positives = 98/286 (34%), Gaps = 31/286 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ I  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
                 A  +RG      G+  EA  D  K L+  P+  +       +            
Sbjct: 67  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD 186

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR------------GLLLHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +                  L  
Sbjct: 187 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 246

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAV 639
            G++  A     S +  +PS  E           C+    +  EA+
Sbjct: 247 DGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI 292

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  161 bits (410), Expect = 1e-44
 Identities = 43/288 (14%), Positives = 100/288 (34%), Gaps = 31/288 (10%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF------------- 427
              RL RG   + +GK   A   F ++LK +P   E                        
Sbjct: 71  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDA 130

Query: 428 --QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA 190

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL------------GLALSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 250

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 251 TDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            R         + +AI+D  +    + ++ +           + + ++
Sbjct: 311 DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  151 bits (384), Expect = 8e-41
 Identities = 44/252 (17%), Positives = 86/252 (34%), Gaps = 27/252 (10%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            E  +  G       +L  A+S F  A+  +P    A+ RR     A+G+S  A+ DL+K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---------- 524
            +  + +      +RG +  K    + A +D    +K +   +                 
Sbjct: 63  VIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR 122

Query: 525 -----LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLY 579
                L      +Y  A     K +++     E      + +       KA+  L+    
Sbjct: 123 LRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 182

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR------------AS 627
           +    ++A++    L + LG H+ ++ ++   L +D  +  C                A 
Sbjct: 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE 242

Query: 628 CYHAIGEYREAV 639
                G Y +A 
Sbjct: 243 ELIRDGRYTDAT 254

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  145 bits (369), Expect = 7e-39
 Identities = 34/243 (13%), Positives = 81/243 (33%), Gaps = 16/243 (6%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
           K+  +    S+ +   +   Y +AI+  D+IL+      E    R      + E   AIS
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 175

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD------------ 484
           D   A +      EA+ +       LG+   ++ ++ + L+ + +               
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAH 540
            L E      +   +  A     + +K +         +   +    S   +  +A    
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            + +Q++ + + A     + Y      ++A++  +     ++   +           L Q
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 601 HKK 603
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score =  105 bits (265), Expect = 6e-25
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 16/183 (8%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF- 427
            +   SK KS + +            G +  ++S   + LK D  +          +   
Sbjct: 176 DLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN 235

Query: 428 -----------QRELEAAISDFTEAIQSNPSAGE----AWKRRGQARAALGESVEAIQDL 472
                            A S +   +++ PS  E    + +R     +   + VEAI+  
Sbjct: 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           S+ L+ EP++ + L +R       + ++ A++D  A  + ++ ++     L  A   + +
Sbjct: 296 SEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355

Query: 533 YKK 535
            +K
Sbjct: 356 SQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDP 100
           L     ++ A    +S++        Y ++       C+S+ E     IR C + LQ++P
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303

Query: 101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
             + A   +  A+      +EA+  +E   EH
Sbjct: 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 12/111 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K + L      A + 
Sbjct: 23  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQ 76

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAA 153
           +G      G+ +EA   ++K        +      + L +  E++ L + A
Sbjct: 77  RGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALH 135
           A+      +  LG  E +LS         L 
Sbjct: 190 AFYKISTLYYQLGDHELSLSE----VRECLK 216

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 21/114 (18%)

Query: 39  ARIELAKLC-SLRNWSKAIRILD----------------SLLAQSYEIQDICNRAFCYSQ 81
           AR++   L        +A                     S L ++ E+Q + ++A     
Sbjct: 73  ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFD 132

Query: 82  LELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
              +   I   DK L++     +   L+   F   G   +A+S      + A  
Sbjct: 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD----LKAASK 182

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           ++R  S+ +++ +     +       +RA  Y   E++   I+D + A + +    Q   
Sbjct: 291 AIRICSEVLQM-EPDNVNAL-----KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIRE 344

Query: 108 LKGCAFSALGRKEE 121
               A   L + ++
Sbjct: 345 GLEKAQRLLKQSQK 358

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 46  LCSLRNWSKAIRILDSLLA---QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTL 102
                   KAI  L +       + E       +  Y QL  H+  + +  + L+LD   
Sbjct: 164 FIKEGEPRKAISDLKAASKLKSDNTEA--FYKISTLYYQLGDHELSLSEVRECLKLDQDH 221

Query: 103 LQAYILKGCAFSALGRKEEALSVWEKG-YEHALHQSADLKQFLELE 147
            + +             E A  +   G Y  A    +  +  ++ E
Sbjct: 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT---SKYESVMKTE 264

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 10/56 (17%), Positives = 19/56 (33%)

Query: 68  EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
           +++                  +     A+  DP    AY  +   F A+G+ + AL
Sbjct: 2   DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAAL 57

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  172 bits (438), Expect = 2e-49
 Identities = 38/240 (15%), Positives = 85/240 (35%), Gaps = 2/240 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G       ++  AI  +++  +        L  R  A   + E E AIS   +A++   
Sbjct: 11  EGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGR 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +K   ++ A +G +   + DL K +E+   S    H    +  K ++    ++  
Sbjct: 70  EMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKLRNAEKELKKA 128

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
            A   ++ E        G    +  ++  A +A+ + I+        + +       L +
Sbjct: 129 EAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS 188

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             +A+    + +  D  F +AY  +      + ++  A++ L +    D         R 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  158 bits (401), Expect = 2e-44
 Identities = 38/216 (17%), Positives = 73/216 (33%), Gaps = 1/216 (0%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R  A+  +G+Y +AIS  +  +++             + A        + D  + I+   
Sbjct: 44  RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ 103

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            +     R       L  + + ++         P  A+     G   F   D+  AV+  
Sbjct: 104 KS-LTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
           +  +K   E+   Y+    AL+ +  + +A     KAI+ D NF+ A+         +  
Sbjct: 163 TEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              ALE L      D   +     R +        +
Sbjct: 223 YASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score =  154 bits (391), Expect = 6e-43
 Identities = 35/228 (15%), Positives = 79/228 (34%), Gaps = 2/228 (0%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               +     G      R+ + AI  + +A + +         R  A    GE   AI  
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI-TYLNNRAAAEYEKGEYETAIST 60

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+ A+E                 +  +    + DL   ++  +++ + +      L+ + 
Sbjct: 61  LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLR 119

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
             +K  +       ++    E      + Y   ++   A++   +++      ++ Y  R
Sbjct: 120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNR 179

Query: 592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
              L  L    +AI D +  +  DP+ +     +A+   A+ EY  A+
Sbjct: 180 AAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 64.9 bits (159), Expect = 8e-12
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +++ I+      A+ Y      NRA   ++L      I DC+KA++ DP  ++AYI 
Sbjct: 159 VKAYTEMIKR-APEDARGY-----SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212

Query: 109 KGCAFSALGRKEEALSVWEKGYEH 132
           K  A  A+     AL   +     
Sbjct: 213 KATAQIAVKEYASALETLDAARTK 236

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 10/55 (18%), Positives = 22/55 (40%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           NRA    +   ++  I   + A++    +   Y +   +F+ +G     L   +K
Sbjct: 43  NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKK 97

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L +  K I      L            A   ++L   +  ++  +    ++P   +   L
Sbjct: 92  LGDLKKTIEYYQKSLT-------EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARL 144

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +G  +        A+  + +
Sbjct: 145 EGKEYFTKSDWPNAVKAYTE 164

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 44.5 bits (106), Expect = 5e-05
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L+       + +   A+             Y       + ++   + ++  P   + Y  
Sbjct: 125 LKKAEAEAYV-NPEKAEEA-----RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 178

Query: 109 KGCAFSALGRKEEALSVWEK 128
           +  A + L    EA++   K
Sbjct: 179 RAAALAKLMSFPEAIADCNK 198

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 10/80 (12%), Positives = 25/80 (31%), Gaps = 7/80 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +   + A+      +   Y        +  ++++    H + D  K ++     L  +  
Sbjct: 58  ISTLNDAVEQ-GREMRADY-----KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR- 110

Query: 109 KGCAFSALGRKEEALSVWEK 128
                + L   E+ L   E 
Sbjct: 111 TADILTKLRNAEKELKKAEA 130

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 6/72 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           + + +KAI   D    ++Y       +A     ++ +   +   D A   D  +      
Sbjct: 193 IADCNKAIEK-DPNFVRAY-----IRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 109 KGCAFSALGRKE 120
           +          +
Sbjct: 247 REIDQLYYKASQ 258

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  177 bits (451), Expect = 2e-49
 Identities = 58/286 (20%), Positives = 102/286 (35%), Gaps = 31/286 (10%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G   +  G+ A A+S F   +  DP    A   R T      + +AA+ D T+ IQ 
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
                 A  +RG      G+  EA  D  K L+  P+  +                L  +
Sbjct: 90  KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  F   D+ AA+  L   +++   +              GE +KA      A +L  +
Sbjct: 150 ALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKND 209

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL------------LHG 597
             EA+  ++  Y  L + E +L  +++ L +D+   + +     +            L  
Sbjct: 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR 269

Query: 598 LGQHKKAIKDLSSGLGIDPSNIE----CLYLRASCYHAIGEYREAV 639
            G++  A     S +  +PS  E           C+    +  EA+
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  159 bits (405), Expect = 5e-43
 Identities = 44/289 (15%), Positives = 102/289 (35%), Gaps = 31/289 (10%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTAR 425
              RL RG   + +GK   A   F ++LK +P   E                L  +    
Sbjct: 94  TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNA 153

Query: 426 AFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
               +  AAI+   + ++      E  + R +     GE  +AI DL  A + + ++ + 
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEA 213

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA------------LSSIGEY 533
            ++   + ++  D   ++ ++  C+KLD+++K  + +                L   G Y
Sbjct: 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQF----YQDLANSEKALECLQQVLYIDKRFSKAYH 589
             A   +   ++ + +  E      +     +       +A+    +VL ++     A  
Sbjct: 274 TDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALK 333

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            R         + +AI+D  +    + ++ +           + + ++ 
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  155 bits (394), Expect = 2e-41
 Identities = 48/280 (17%), Positives = 94/280 (33%), Gaps = 38/280 (13%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+    E  Y  +++             E  +  G       +L  A+S F  A+  +P
Sbjct: 9   SGVDLGTENLYFQSMA-----------DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP 57

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ RR     A+G+S  A+ DL+K ++ + +      +RG +  K    + A +D 
Sbjct: 58  DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF 117

Query: 507 SACVKLDKENKSAYTYL---------------GLALSSIGEYKKAEEAHLKAIQLDRNFL 551
              +K +                          L     G+Y  A     K +++     
Sbjct: 118 KKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA 177

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           E      + +       KA+  L+    +    ++A++    L + LG H+ ++ ++   
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

Query: 612 LGIDPSNIECLYLR------------ASCYHAIGEYREAV 639
           L +D  +  C                A      G Y +A 
Sbjct: 238 LKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  153 bits (389), Expect = 8e-41
 Identities = 42/242 (17%), Positives = 90/242 (37%), Gaps = 26/242 (10%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M+       G     +     +++D            E     G+   A G+  +A+   
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMADV-----------EKHLELGKKLLAAGQLADALSQF 49

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
             A++ +P++    + R  V        AA+ DL+  ++L  +  +A    G  L   G+
Sbjct: 50  HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQF---------------YQDLANSEKALECLQQV 577
             +AE+   K ++ + +  E     +Q                     +   A+  L ++
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
           L +    ++   LR       G+ +KAI DL +   +   N E  Y  ++ Y+ +G++  
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229

Query: 638 AV 639
           ++
Sbjct: 230 SL 231

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score =  135 bits (343), Expect = 1e-34
 Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 26/297 (8%)

Query: 326 ESYSKSSISDNKSSDSTESRSKLSFKWDMLK--ETSNEAKRNKKF-----CVTRISKSKS 378
           + + K   S+   ++  E++S+L    +M +    +  A  +  +      + +I +   
Sbjct: 115 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF 438
              + R  R    + EG+   AIS      K      EA     T      + E ++S+ 
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234

Query: 439 TEAIQSNPSAGEAWKRRGQARAA------------LGESVEAIQDLSKALEFEPNSADIL 486
            E ++ +      +    Q +               G   +A       ++ EP+ A+  
Sbjct: 235 RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYT 294

Query: 487 HE----RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                       K +    A+   S  ++++ +N +A      A      Y +A + +  
Sbjct: 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET 354

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLH 596
           A + + N  +    L +  + L  S+K        +  + +     KAY    L  H
Sbjct: 355 AQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 85.1 bits (211), Expect = 1e-17
 Identities = 31/152 (20%), Positives = 55/152 (36%), Gaps = 23/152 (15%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
                  + K   AI +  ++L+ +P    AL  R  A   +   + AI D+  A + N 
Sbjct: 301 ICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSK------------------ALEFEPNSADILHE 488
           +  +  +   +A+  L +S +                         AL++ P++     E
Sbjct: 361 NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEE 420

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
           +     KF D  AA E LS     D E +  +
Sbjct: 421 KKKAEKKFIDIAAAKEVLS-----DPEMRKKF 447

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 63.6 bits (155), Expect = 9e-11
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 15/137 (10%)

Query: 11  YRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCS----------LRNWSKAIRILD 60
           Y+L     ++ E+ E +++D           ++ KL               ++ A    +
Sbjct: 222 YQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281

Query: 61  SLLA-----QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSA 115
           S++        Y ++       C+S+ E     IR C + LQ++P  + A   +  A+  
Sbjct: 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLI 341

Query: 116 LGRKEEALSVWEKGYEH 132
               +EA+  +E   EH
Sbjct: 342 EEMYDEAIQDYETAQEH 358

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 12/115 (10%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  +  A+   D     +Y       RA  +  +   K  + D  K +QL      A + 
Sbjct: 46  LSQFHAAVD-GDPDNYIAY-----YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99

Query: 109 KGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLELEELLTAAKQDR 157
           +G      G+ +EA   ++K               + L +  E++ L + A    
Sbjct: 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                +++ AI  LD +L    ++ +    RA C+ +    +  I D   A +L     +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
           A+      +  LG  E +LS   +
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRE 236

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 39  ARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL 98
           A  +  K+          +   S L +S E+Q + ++A        +   I   DK L++
Sbjct: 113 AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALH 135
                +   L+   F   G   +A+S      + A  
Sbjct: 173 CVWDAELRELRAECFIKEGEPRKAISD----LKAASK 205

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 15/138 (10%)

Query: 8   DSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSY 67
            + +        I  +D+++ V    A     R E           KAI  L +      
Sbjct: 151 LNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC--FIKEGEPRKAISDLKAASKLKN 208

Query: 68  EIQD-ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL------------KGCAFS 114
           +  +     +  Y QL  H+  + +  + L+LD    + +                    
Sbjct: 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 268

Query: 115 ALGRKEEALSVWEKGYEH 132
             GR  +A S +E   + 
Sbjct: 269 RDGRYTDATSKYESVMKT 286

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  170 bits (432), Expect = 1e-48
 Identities = 39/271 (14%), Positives = 89/271 (32%), Gaps = 14/271 (5%)

Query: 379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISD- 437
           ++ D              YA AI +F+++  +    P     R        + + A  D 
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 438 --FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
             +   + +  +    ++  G+     G+   AIQ    A++ +    D+  + G   + 
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
             +F  A++ +   ++    +   +  LG A     EY KA+ + +K ++L  N    + 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 556 HLTQFYQDLANSEK---ALECLQQVLYID--------KRFSKAYHLRGLLLHGLGQHKKA 604
              +         K   A    ++++ +             +A               KA
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEY 635
                + L +DP+N + +            +
Sbjct: 241 DAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score =  147 bits (373), Expect = 2e-40
 Identities = 37/241 (15%), Positives = 64/241 (26%), Gaps = 14/241 (5%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           M  +                 AI  F +      ++   + RR      L +   A +D+
Sbjct: 1   MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60

Query: 473 S---KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
                 +      +      G +  K    + A++   A V  D      Y  +G    +
Sbjct: 61  ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN 120

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G +  A +   K I+      + +  L Q Y       KA     +VL +       Y 
Sbjct: 121 KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180

Query: 590 LRGLLLHGLGQHKK---AIKDLSSGLGIDPSN--------IECLYLRASCYHAIGEYREA 638
            R           K   A       + +            IE     A  Y    +  +A
Sbjct: 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240

Query: 639 V 639
            
Sbjct: 241 D 241

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 11/75 (14%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            A+   D+     Y           +         I+  +K ++   T  + +   G A+
Sbjct: 99  AAVDR-DTTRLDMY-----GQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152

Query: 114 SALGRKEEALSVWEK 128
                  +A S + K
Sbjct: 153 YYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 12/75 (16%), Positives = 19/75 (25%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
             +       +  +             +       I+    A+  D T L  Y   G  F
Sbjct: 65  SKVNA-TKAKSADF-----EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 114 SALGRKEEALSVWEK 128
              G    A+   EK
Sbjct: 119 YNKGNFPLAIQYMEK 133

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    +   +   I   +K           Y  +   +  L + + A    E  Y   
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIET-YFSK 66

Query: 134 L 134
           +
Sbjct: 67  V 67

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCD---KALQLDPT 101
           L    N+++AI + + L A+ Y    I   RA CY +L  +    +D +     +     
Sbjct: 13  LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA 72

Query: 102 LLQAYILKGCAFSALGRKEEALSVWEK 128
               +   G      G+   A+  ++ 
Sbjct: 73  KSADFEYYGKILMKKGQDSLAIQQYQA 99

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  176 bits (449), Expect = 2e-48
 Identities = 50/311 (16%), Positives = 96/311 (30%), Gaps = 19/311 (6%)

Query: 345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIF 404
            S L           + A       +       +    + ++  +   +   Y S +S  
Sbjct: 175 DSHLEVSSVNTSSNYDTAYALLSDALQ--RLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                       AL   G     +  L  A     E+I  +P+   ++       A    
Sbjct: 233 TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKEN 291

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG 524
           S E  +   KA++  P      + RG + F  +D+  A ED      L+ EN   Y  L 
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
             L   G++ ++E    +         E      +   D  + + A++       +++  
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411

Query: 585 SKAYHLRGLLLH----------------GLGQHKKAIKDLSSGLGIDPSNIECLYLRASC 628
            K +   G L+                    +   AIK L+    +DP + +     A  
Sbjct: 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471

Query: 629 YHAIGEYREAV 639
              + +  EA+
Sbjct: 472 KLQMEKIDEAI 482

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  171 bits (435), Expect = 2e-46
 Identities = 38/269 (14%), Positives = 82/269 (30%), Gaps = 19/269 (7%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI    +     A  +  + +   P    + I      A +   +     F +A+  NP
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNP 307

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                +  RGQ    L +   A +D  KA    P +     +   + +K   F  +    
Sbjct: 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--------- 557
           +             T+    L+  G++  A + +  A +L+    +    +         
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427

Query: 558 -------TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
                       D      A++ L +   +D R  +A      L   + +  +AI+    
Sbjct: 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAV 639
              +  +  E L      +    + ++ +
Sbjct: 488 SAILARTMDEKLQATT--FAEAAKIQKRL 514

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  155 bits (393), Expect = 8e-41
 Identities = 37/263 (14%), Positives = 85/263 (32%), Gaps = 25/263 (9%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
             +   ++         F + +  +P YP     RG      ++ + A  DF +A   NP
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                + +        G+  E+    ++     P   ++      +     DF+ A++  
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQY 401

Query: 507 SACVKLDKENKSAYTYLGLALS----------------SIGEYKKAEEAHLKAIQLDRNF 550
               +L++  +  +  +G  +                    ++  A +   KA +LD   
Sbjct: 402 DIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
            +A   L Q    +   ++A+E  +    + +   +             + +K ++    
Sbjct: 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ--ATTFAEAAKIQKRLR---- 515

Query: 611 GLGIDPSNIECLYLRASCYHAIG 633
               DP     + L  + Y A G
Sbjct: 516 ---ADPIISAKMELTLARYRAKG 535

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  144 bits (364), Expect = 7e-37
 Identities = 46/267 (17%), Positives = 82/267 (30%), Gaps = 15/267 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        +  AI  +   ++ DP  P              +LE  I   T+A++  P
Sbjct: 31  RGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP 90

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSADILHERGIVNFKFKDFN-AA 502
              +A  RR  A  +LG   +A+ DLS      +F+  S + + ER +     K  N   
Sbjct: 91  DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENL 150

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKAEEAHLKAIQLDRNFLEAW 554
            +D     ++   N S  ++ G+  S +          Y  A      A+Q   +  +  
Sbjct: 151 SKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210

Query: 555 GHL--TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
             +      +        L        + +  + A    G+          A   L   +
Sbjct: 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESI 270

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAV 639
            + P         A         +E  
Sbjct: 271 NLHP-TPNSYIFLALTLADKENSQEFF 296

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  139 bits (352), Expect = 3e-35
 Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG        Y +A   F +    +P      I        Q +   + + F E     P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF---------- 496
           +  E      +     G+   AI+    A   E     I    G +  K           
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435

Query: 497 ------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
                 + FNAA++ L+   +LD  ++ A   L      + +  +A E    +  L R  
Sbjct: 436 PTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495

Query: 551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
            E     T  + + A  +K L     +    +     Y  +G+L
Sbjct: 496 DEKLQATT--FAEAAKIQKRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score =  129 bits (325), Expect = 8e-32
 Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 15/273 (5%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTAR-AFQRELEAAIS 436
               L R  A  + G +  A+     +           E ++ R   + A +   E    
Sbjct: 93  SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSK 152

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAAL--------GESVEAIQDLSKALEFEPNSADILHE 488
           D     Q  PS        G   + L             A   LS AL+   ++ D  + 
Sbjct: 153 DEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYL 212

Query: 489 RGIVNFK--FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                       +++ +   +    L +    A  Y G+          A+    ++I L
Sbjct: 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                 ++  L     D  NS++  +  Q+ + ++  +   Y+ RG +   L  +K A +
Sbjct: 273 HPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           D      ++P N+      A   +  G++ E+ 
Sbjct: 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESE 364

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%)

Query: 376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI 435
            K+  +  + S+   Q++E K+ +AI +  +  + DP   +A IG    +    +++ AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             F ++     +  E  +    A AA  +  + ++           +      +G++
Sbjct: 483 ELFEDSAILARTMDEKLQATTFAEAAKIQ--KRLRADPIISAKMELTLARYRAKGML 537

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 32/150 (21%), Positives = 53/150 (35%), Gaps = 8/150 (5%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           ++ +  AI + D      Y      N + CY      + VI    KAL++ P   +A + 
Sbjct: 45  IKYYQYAIEL-DPNEPVFY-----SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLR 98

Query: 109 KGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAK--QDRSVTCEYDVS 166
           +  A  +LG   +A+        +     A ++  LE      A K   +     E   S
Sbjct: 99  RASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGS 158

Query: 167 NSMSSLTVSESGLNANDKMSETSENHNKSD 196
             + S T   S     D   E S  +  S+
Sbjct: 159 QVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + +     +Y      +R   Y  L+ +K+   D  KA  L+P  +  YI   C  
Sbjct: 301 KAVDL-NPEYPPTY-----YHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354

Query: 114 SALGRKEEALSVWEK 128
              G+  E+ + + +
Sbjct: 355 YKQGKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 14/83 (16%), Positives = 26/83 (31%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
                N   A  +L   +            A   +  E  +   +   KA+ L+P     
Sbjct: 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +  L   + A   ++K
Sbjct: 313 YYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             ++ KA  + +      Y        A    +           ++     PTL +    
Sbjct: 330 KEDFQKAQSL-NPENVYPY-----IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTF 383

Query: 109 KGCAFSALGRKEEALSVWEK 128
                +  G  + A+  ++ 
Sbjct: 384 FAEILTDRGDFDTAIKQYDI 403

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 54  KAIRI----------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
            A R+          +  L+ ++  +    ++       E     I+   KA +LDP   
Sbjct: 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSE 462

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           QA I        + + +EA+ ++E 
Sbjct: 463 QAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 7/55 (12%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                +              +++ L PT   +YI      +     +E    ++K
Sbjct: 248 YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQK 301

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 11/97 (11%), Positives = 29/97 (29%), Gaps = 3/97 (3%)

Query: 35  SAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDIC---NRAFCYSQLELHKHVIRD 91
               + +E++ + +  N+  A  +L   L + Y   D              +++  ++  
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231

Query: 92  CDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                 L      A    G          +A  + ++
Sbjct: 232 NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE 268

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 10/51 (19%), Positives = 19/51 (37%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALS 124
           NR   +   +     I+    A++LDP     Y      + + G  E+ + 
Sbjct: 30  NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 80

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  162 bits (412), Expect = 5e-46
 Identities = 46/242 (19%), Positives = 92/242 (38%), Gaps = 3/242 (1%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  +  +      M     +GRG+      + E A   FT+AI+ N      + 
Sbjct: 5   HHHHHHSSGLVPRGSHMASMTGGQQMGRGSE---FGDYEKAAEAFTKAIEENKEDAIPYI 61

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
                 +++ E   A+    KALE + ++A   +  G V    + +  A +     ++  
Sbjct: 62  NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG 121

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
            EN   +  LG  L  + + K A     +A++L+ N  EA         +    ++AL  
Sbjct: 122 MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              V   D   + A++  G+        +KA++ L   + I P ++  L+ +    H   
Sbjct: 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241

Query: 634 EY 635
            +
Sbjct: 242 HH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  158 bits (401), Expect = 1e-44
 Identities = 50/215 (23%), Positives = 84/215 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +       G Y  A   F + ++E+       I      +   ELE A++ + +A++ + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           SA  A+   G          EA     KAL     + D+ +  G V  K +    A+  L
Sbjct: 89  SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL 148

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              V+L++ +  A    G+ L++ G   +A        + D    +A+ +    Y    N
Sbjct: 149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN 208

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
            EKALE L + + I      A H + LL H    H
Sbjct: 209 REKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score =  141 bits (357), Expect = 2e-38
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 4/213 (1%)

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARA----ALGESVEAIQDLSKALEFEPNSADIL 486
           + ++      +    P         G  +       G+  +A +  +KA+E     A   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
                +     +   A+      ++LD    +AY   G        YK+A++   KA++ 
Sbjct: 61  INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
                + +  L      L   + AL  LQ+ + +++  ++A    G+ L   G   +A+ 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 607 DLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
             ++    DP + +  Y     Y       +A+
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  + KA+ + DS  A +Y           Y   E++K      +KAL+        + +
Sbjct: 77  LAFYDKALEL-DSSAATAY-----YGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYM 130

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G     L + + AL       + A+
Sbjct: 131 LGTVLVKLEQPKLAL----PYLQRAV 152

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + +    ++           C +   +    +       + DP    A+   G  +
Sbjct: 150 RAVEL-NENDTEAR-----FQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203

Query: 114 SALGRKEEALSVWEK 128
           +    +E+AL + +K
Sbjct: 204 AYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           +   ++KAI   +   A  Y      N A   S +   +  +   DKAL+LD +   AY 
Sbjct: 42  AAEAFTKAIEE-NKEDAIPY-----INFANLLSSVNELERALAFYDKALELDSSAATAYY 95

Query: 108 LKGCAFSALGRKEEALSVWEK 128
             G  +      +EA  ++EK
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEK 116

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+R         +             +LE  K  +    +A++L+    +A    G   
Sbjct: 116 KALRA-GMENGDLF-----YMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169

Query: 114 SALGRKEEALSVWEK 128
           +  G  +EALS +  
Sbjct: 170 ANEGMLDEALSQFAA 184

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
            +  ++      +        +    S+   ++       KA++ +      YI      
Sbjct: 10  HSSGLVPRGSHMASMTGG--QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 114 SALGRKEEALSVWEK 128
           S++   E AL+ ++K
Sbjct: 68  SSVNELERALAFYDK 82

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L  ++      D   A ++      N    Y+  E  +  +   DKA+ + P  + A   
Sbjct: 179 LSQFAAVTEQ-DPGHADAF-----YNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232

Query: 109 KGCAFSALGR 118
           K         
Sbjct: 233 KKLLGHHHHH 242

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  165 bits (419), Expect = 5e-46
 Identities = 44/264 (16%), Positives = 88/264 (33%), Gaps = 10/264 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSN 445
                V   K      +  +++   P  P +    G        + E A    ++A    
Sbjct: 62  HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE 121

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
            + G AW   G + A   E  +A+     A +        +   G+      +   A   
Sbjct: 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------NFLEAWGH 556
            S  + +  E+      +G+     GE+K AE+  L A++  +          +     +
Sbjct: 182 FSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
           L    + L    +AL+  +Q L +  + +  Y   G +   +G  + A+    + LG+  
Sbjct: 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301

Query: 617 SNIECLYLRASCYHAIGEYREAVI 640
            +   + +   C        EA I
Sbjct: 302 DDTFSVTMLGHCIEMYIGDSEAYI 325

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score =  160 bits (407), Expect = 2e-44
 Identities = 40/270 (14%), Positives = 79/270 (29%), Gaps = 10/270 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++D  +S          +     +   ++++DP +   L           +         
Sbjct: 21  NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSH 80

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVE-AIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           + +   PS   +W   G     +G   E A + LSKA   E          G       +
Sbjct: 81  KLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESE 140

Query: 499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLT 558
            + A+       +L K       Y+GL        K AE    +A+ +          + 
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 559 QFYQDLANSEKALECLQQVLYIDK---------RFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                    + A +     L   K         ++    +  G +   L ++ +A+    
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAV 639
             L + P N          +  +G +  AV
Sbjct: 261 QALVLIPQNASTYSAIGYIHSLMGNFENAV 290

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 92.4 bits (230), Expect = 1e-20
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 9/162 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+          A   F Q L   P  P  +   G       E + A   F +A++   
Sbjct: 165 IGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224

Query: 447 SAG---------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           + G               G     L +  EA+    +AL   P +A      G ++    
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           +F  AV+     + L +++  + T LG  +       +A   
Sbjct: 285 NFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEAYIG 326

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 1/111 (0%)

Query: 531 GEYKKAEEAHL-KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
           G Y K  E  + +++   +  L+    L + +    + +   +    V+  D   +    
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI 640
           +    L  L +  +        + + PSN    +     Y  +G   E   
Sbjct: 61  VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHAR 111

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQL-ELHKHVIRDCDKALQL 98
           L  L   ++   +   L+        S+           Y  +   ++H  R   KA  L
Sbjct: 66  LVELNKANELFYLSHKLVDLYPSNPVSW-----FAVGCYYLMVGHKNEHARRYLSKATTL 120

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           + T   A+I  G +F+     ++A++     Y  A 
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAA----YFTAA 152

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/85 (12%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                ++    ++   ++ +  +    +        +L     +     K + L P+   
Sbjct: 32  HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91

Query: 105 AYILKGCAFSALGRK-EEALSVWEK 128
           ++   GC +  +G K E A     K
Sbjct: 92  SWFAVGCYYLMVGHKNEHARRYLSK 116

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 10/79 (12%), Positives = 23/79 (29%), Gaps = 1/79 (1%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
              L+ +++A+      L              + +S +   ++ +     AL L      
Sbjct: 246 CRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTF 305

Query: 105 AYILKGCAFSALGRKEEAL 123
           +  + G          EA 
Sbjct: 306 SVTMLGHCIEMYIGDSEAY 324

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 9/75 (12%), Positives = 21/75 (28%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
               I +S+      +  + + A  +      K   +     ++ DP       +     
Sbjct: 7   SETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL 66

Query: 114 SALGRKEEALSVWEK 128
             L +  E   +  K
Sbjct: 67  VELNKANELFYLSHK 81

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R  SKA   L+     ++           ++    H   +     A QL        + 
Sbjct: 111 RRYLSKATT-LEKTYGPAW-----IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLY 164

Query: 109 KGCAFSALGRKEEALSVWEKGYEHAL 134
            G  +      + A    E+ +  AL
Sbjct: 165 IGLEYGLTNNSKLA----ERFFSQAL 186

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
            + +  A+  + ++  +    +      N      +L+ +   +    +AL L P     
Sbjct: 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNAST 272

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           Y   G   S +G  E A+      +  AL
Sbjct: 273 YSAIGYIHSLMGNFENAVDY----FHTAL 297

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  165 bits (420), Expect = 5e-44
 Identities = 45/292 (15%), Positives = 93/292 (31%), Gaps = 7/292 (2%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY 414
           L +TS+E +  +             S D  L +        ++   ++I  +IL+ DP  
Sbjct: 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN 338

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +       +     E         + +  +P     W   G     + +  EA +  SK
Sbjct: 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
           +   +P                 + + A+   +   +L +     Y +LG+    +G   
Sbjct: 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNIL 458

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI-------DKRFSKA 587
            A E    +  L +        L     + ++ + A+   Q  L +       +K ++  
Sbjct: 459 LANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           +   G     L  +  AI  L+ GL +  ++       A  Y        A+
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  158 bits (402), Expect = 1e-41
 Identities = 43/250 (17%), Positives = 83/250 (33%), Gaps = 7/250 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +    G+      I + ++   P      +  G       ++  A   F+++   +P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP 404

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
             G AW     + A  GE  +AI   + A      +       G+ + +  +   A E L
Sbjct: 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL 464

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQ 559
            +   L + +      LG+   +  + + A      A+ L +        +   W +L  
Sbjct: 465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
            Y+ L   + A++ L Q L +    +  +    L+         AI  L   L I P+ I
Sbjct: 525 AYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584

Query: 620 ECLYLRASCY 629
               L     
Sbjct: 585 MASDLLKRAL 594

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  154 bits (391), Expect = 3e-40
 Identities = 32/261 (12%), Positives = 76/261 (29%), Gaps = 7/261 (2%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
              + + +          +   +       + L+ +      +      ++  T+ ++ +
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID 335

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + +     +    GE  +     +  ++  P  A      GI        + A   
Sbjct: 336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRY 395

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
            S    +D +   A+     + +  GE+ +A  A+  A +L +     +  L   +  L 
Sbjct: 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLG 455

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL-------SSGLGIDPSN 618
           N   A E LQ    + +      +  G++       + AI                +   
Sbjct: 456 NILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPW 515

Query: 619 IECLYLRASCYHAIGEYREAV 639
                     Y  +  Y  A+
Sbjct: 516 AATWANLGHAYRKLKMYDAAI 536

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  146 bits (371), Expect = 1e-37
 Identities = 38/290 (13%), Positives = 93/290 (32%), Gaps = 5/290 (1%)

Query: 355 LKETSNEAKRNKKFCVTRISKSKSISVDFRL--SRGIAQVNEGKYASAISIFDQILKEDP 412
           L   +N  ++++K     + +   I ++  +   RG    N   +  A   + + L  D 
Sbjct: 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231

Query: 413 MYPEAL--IGRGTARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
              EA   +          E +  +  +++   + + +   +       + +  + +   
Sbjct: 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +D   ++     S+D+L  +    F    F   +   +  +++D  N   Y     +L  
Sbjct: 292 EDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHE 351

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            GE  K        +         W  +  +Y  +    +A     +   +D +F  A+ 
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                    G+H +AI   ++   +              +  +G    A 
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  113 bits (283), Expect = 2e-26
 Identities = 50/351 (14%), Positives = 109/351 (31%), Gaps = 25/351 (7%)

Query: 311 LSSDSASLNDSN-TNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFC 369
           + S   + N  +   + +Y         +++++ S+        M    +N +       
Sbjct: 12  MQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLK 71

Query: 370 VTRISKSKSISVDFRLSRGIAQ--VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF 427
                 + S+S +  L R      + + +Y  A  + +++L      P            
Sbjct: 72  ERNAQNTDSLSREDYL-RLWRHDALMQQQYKCAAFVGEKVLDITG-NPNDAFWLAQVYCC 129

Query: 428 QRELEAAISDFTEAIQSNPSAG----------------EAWKRRGQARAALGESVEAIQD 471
             +   A    T+    N S+                  A    G+      +   A + 
Sbjct: 130 TGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKL 189

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALSS 529
           L +    +   A + + RG V     +F+ A E     + +D +   A+  L     L++
Sbjct: 190 LMQDGGIKLE-ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA 248

Query: 530 IGEYKKAEEAHL-KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
             E+    + +     + D  FL +   L        +  +  E     +   ++ S   
Sbjct: 249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308

Query: 589 HLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
             +   L    +    +   +  L IDP N++   L  +  H  GE  +  
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score =  111 bits (279), Expect = 7e-26
 Identities = 26/184 (14%), Positives = 53/184 (28%), Gaps = 7/184 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              +   EG++  AIS +    +         +  G        +  A      +     
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFE-------PNSADILHERGIVNFKFKDF 499
                    G       +   AI     AL             A      G    K K +
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMY 532

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +AA++ L+  + L   + + +T + L          A     +++ +  N + A   L +
Sbjct: 533 DAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592

Query: 560 FYQD 563
             ++
Sbjct: 593 ALEE 596

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 20/174 (11%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
            A     K L+   N  D       V     D+  A   L     L   + +        
Sbjct: 102 CAAFVGEKVLDITGNPNDA-FWLAQVYCCTGDYARAKC-LLTKEDLYNRSSACRYLAAFC 159

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
           L  + +++ A              L   G    F +D  N+ K L     +    K  + 
Sbjct: 160 LVKLYDWQGA--------------LNLLGETNPFRKDEKNANKLLMQDGGI----KLEAS 201

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI 640
             +LRG +   L    +A +     L +D    E      S +    +    ++
Sbjct: 202 MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLV 255

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 15/95 (15%)

Query: 46  LCSLRNWSKAIRILDSLL------AQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
           L      +K   I + L+      A ++           Y  +       R   K+  +D
Sbjct: 349 LHESGEKNKLYLISNDLVDRHPEKAVTW-----LAVGIYYLCVNKISEARRYFSKSSTMD 403

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHAL 134
           P    A+I    +F+  G  ++A+S     Y  A 
Sbjct: 404 PQFGPAWIGFAHSFAIEGEHDQAISA----YTTAA 434

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 14/90 (15%), Positives = 28/90 (31%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
            V +   ++        + G A      Y +AI   +Q L                   +
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQA 458
           +    AI+   E++  +P+   A     +A
Sbjct: 564 KIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 10/125 (8%), Positives = 33/125 (26%), Gaps = 3/125 (2%)

Query: 5   KLLDSRYRLNKTHKTICEIDELVRVDSVMASAITARIELAKLCSLRNWSKAIRILDSLLA 64
            L  ++       +   +    +      +  +  + +   L     +   + I   +L 
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADT--LFVRSRFIDVLAITTKILE 333

Query: 65  QS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL 123
              Y +           +      +    +  +   P     ++  G  +  + +  EA 
Sbjct: 334 IDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEAR 393

Query: 124 SVWEK 128
             + K
Sbjct: 394 RYFSK 398

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 8/76 (10%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 54  KAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            A+ ++    +          N    Y +L+++   I   ++ L L       +      
Sbjct: 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559

Query: 113 FSALGRKEEALSVWEK 128
           +        A++   +
Sbjct: 560 YLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 6/83 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
            R +SK+   +D     ++        A  ++    H   I     A +L       Y+ 
Sbjct: 393 RRYFSKSST-MDPQFGPAW-----IGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLF 446

Query: 109 KGCAFSALGRKEEALSVWEKGYE 131
            G     LG    A    +  Y 
Sbjct: 447 LGMQHMQLGNILLANEYLQSSYA 469

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  151 bits (384), Expect = 8e-42
 Identities = 44/224 (19%), Positives = 77/224 (34%), Gaps = 4/224 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           RG+   + G  A A + F Q L   P  PE     G         +AA   F   ++ +P
Sbjct: 49  RGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A   RG A    G    A  DL    + +PN         +   K  D   A E L
Sbjct: 109 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK-LDEKQAKEVL 167

Query: 507 SACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +   + +  +  +   L +I      ++ +        L  +  E   +L ++Y  
Sbjct: 168 KQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLS 227

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
           L + + A    +  +  +      +    L L  LGQ +  + +
Sbjct: 228 LGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  147 bits (372), Expect = 4e-40
 Identities = 42/259 (16%), Positives = 79/259 (30%), Gaps = 8/259 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 12  AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 72  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE---EAHLKAIQLDRNFLEAWGHLTQF 560
           +DL A  + D  +     +L LA   + E +  E   +   K+ +    +     +L   
Sbjct: 132 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 191

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
             +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 192 S-EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250

Query: 621 CLYLRASCYHAIGEYREAV 639
                      +G+ ++ +
Sbjct: 251 EHRYALLELSLLGQDQDDL 269

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  117 bits (295), Expect = 1e-29
 Identities = 36/193 (18%), Positives = 59/193 (30%), Gaps = 4/193 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI     G + +A   FD +L+ DP Y  A + RG A  +    + A  D     Q +P
Sbjct: 83  LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 142

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAV 503
           +          A   L E  +A + L +  E         +          +        
Sbjct: 143 NDPFRSLWLYLAEQKLDEK-QAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLK 201

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
            D +    L +       YLG    S+G+   A      A+  + +      +       
Sbjct: 202 ADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSL 261

Query: 564 LANSEKALECLQQ 576
           L   +  L    Q
Sbjct: 262 LGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score =  104 bits (261), Expect = 4e-25
 Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 39/235 (16%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           + + +       +   Q    L    + +         +   A +L+ERG++        
Sbjct: 4   SWRKSEVLAVPLQPTLQQEVILARMEQILA---SRALTDDERAQLLYERGVLYDSLGLRA 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            A  D S  + +  +    + YLG+ L+  G +  A EA    ++LD  +  A  +    
Sbjct: 61  LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 120

Query: 561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL---------------------- 598
                  + A + L      D           L    L                      
Sbjct: 121 LYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 180

Query: 599 --------------GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                            ++   D +    +     E  +     Y ++G+   A 
Sbjct: 181 WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + +        +  ++  +  R   Y  L L      D  +AL + P + + +   G  
Sbjct: 29  EQILASRALTDDERAQL--LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIY 86

Query: 113 FSALGRKEEALSVWEK 128
            +  G  + A   ++ 
Sbjct: 87  LTQAGNFDAAYEAFDS 102

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 40  RIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLD 99
              LA      ++S+A+ I    + + +            +Q           D  L+LD
Sbjct: 58  LRALA----RNDFSQALAI-RPDMPEVF-----NYLGIYLTQAGNFDAAYEAFDSVLELD 107

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           PT   A++ +G A    GR + A       Y+
Sbjct: 108 PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 8/80 (10%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
             + +    +    L+++            Y  L            A+  +      +  
Sbjct: 201 KADATDNTSL-AEHLSETN-----FYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRY 254

Query: 109 KGCAFSALGRKEEALSVWEK 128
                S LG+ ++ L+  ++
Sbjct: 255 ALLELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 79  YSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            S+  L + +  D      L   L +     G  + +LG  + A ++++ 
Sbjct: 191 ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  160 bits (405), Expect = 3e-41
 Identities = 32/253 (12%), Positives = 67/253 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 595

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P     +          +     +  
Sbjct: 596 QVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPV 655

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 656 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALE 715

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+ P+ +  +   
Sbjct: 716 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASN 775

Query: 626 ASCYHAIGEYREA 638
                A+   +  
Sbjct: 776 IGGKQALETVQRL 788

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  159 bits (404), Expect = 4e-41
 Identities = 31/254 (12%), Positives = 67/254 (26%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 434 SHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLT 493

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 494 PDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 553

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L +  + A        Q L 
Sbjct: 554 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +   
Sbjct: 614 TVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 673

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 674 GGGKQALETVQRLL 687

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  157 bits (398), Expect = 2e-40
 Identities = 31/254 (12%), Positives = 67/254 (26%), Gaps = 1/254 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q     P    A+   G  +A +  ++  +    +A    
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALET-VQRLLPVLCQAHGLT 425

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A       + AL      +  L +     P     +          +     +  
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPV 485

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 545

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+    +  +   
Sbjct: 546 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN 605

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 606 IGGKQALETVQRLL 619

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  155 bits (393), Expect = 9e-40
 Identities = 35/254 (13%), Positives = 71/254 (27%), Gaps = 1/254 (0%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG     E  +AS  ++    L   P    A+      +     ++  +    +A   
Sbjct: 162 AKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+   A       + AL      +  L +A    P+    +          +     + 
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            L     L  +   A    G    ++   ++      +A  L  + + A        Q L
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL 341

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
              ++ L  L Q   +      A    G     L   ++ +  L    G+ P  +  +  
Sbjct: 342 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 401

Query: 625 RASCYHAIGEYREA 638
                 A+   +  
Sbjct: 402 NGG-KQALETVQRL 414

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  154 bits (391), Expect = 2e-39
 Identities = 31/253 (12%), Positives = 65/253 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 468 SHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLT 527

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P+    +   G      +     +  
Sbjct: 528 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 587

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +    A         ++   ++      +A  L    + A        Q L 
Sbjct: 588 LCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALE 647

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A    G     L   ++ +  L    G+    +  +   
Sbjct: 648 TVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASN 707

Query: 626 ASCYHAIGEYREA 638
                A+   +  
Sbjct: 708 NGGKQALETVQRL 720

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  152 bits (385), Expect = 1e-38
 Identities = 30/254 (11%), Positives = 65/254 (25%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 502 SNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 561

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 562 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPV 621

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L  + + A        Q L 
Sbjct: 622 LCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 681

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 742 GGGKQALETVQRLL 755

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  150 bits (379), Expect = 5e-38
 Identities = 31/254 (12%), Positives = 69/254 (27%), Gaps = 1/254 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  Q         + +  Q     P    A+      +     ++  +    +     
Sbjct: 401 SNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL    + +  L +A    P+    +                +  
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L  + + A        Q L 
Sbjct: 520 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 579

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P+ +  +   
Sbjct: 580 TVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASH 639

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 640 DGGKQALETVQRLL 653

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  147 bits (371), Expect = 5e-37
 Identities = 30/254 (11%), Positives = 69/254 (27%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q      +   A+      +     ++  +    +A    
Sbjct: 570 SNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLT 629

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P+   A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 630 PAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 689

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L +E   A         ++   ++      +A  L  + + A        Q L 
Sbjct: 690 LCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALE 749

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+  + +  +   
Sbjct: 750 TVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASN 809

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 810 IGGKQALETVQRLL 823

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  140 bits (355), Expect = 5e-35
 Identities = 32/253 (12%), Positives = 67/253 (26%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
              A+  E     A  +    L+ D      +  RG   A +    +  +     +   P
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTP 189

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +   A       + AL      +  L +A    P     +          +     +  L
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                L  +   A         ++   ++      +A  L  + + A        Q L  
Sbjct: 250 CQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALET 309

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
            ++ L  L Q   +      A          L   ++ +  L    G+ P  +  +    
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 627 SCYHAIGEYREAV 639
               A+   +  +
Sbjct: 370 GGKQALETVQRLL 382

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  139 bits (351), Expect = 2e-34
 Identities = 29/253 (11%), Positives = 62/253 (24%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+      +     ++  +    +A    
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A          +          +     +  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L  +   A    G    ++   ++      +A  L    + A        Q L 
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALE 783

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 626 ASCYHAIGEYREA 638
                A+   +  
Sbjct: 844 IGGKQALETVQRL 856

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  137 bits (345), Expect = 1e-33
 Identities = 29/253 (11%), Positives = 63/253 (24%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    +         + +  Q     P    A+   G  +     ++  +    +A    
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
                A       + AL      +  L +A    P+    +   G      +     +  
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPV 757

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +   L    + A        Q L 
Sbjct: 758 LCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALE 817

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   + +    A          L   ++ +  L    G+ P  +  +   
Sbjct: 818 TVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASN 877

Query: 626 ASCYHAIGEYREA 638
                A+   +  
Sbjct: 878 IGGKQALETVQRL 890

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  120 bits (303), Expect = 1e-28
 Identities = 29/254 (11%), Positives = 64/254 (25%), Gaps = 1/254 (0%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G  +         + +  Q          A+      +     ++  +    +A    
Sbjct: 672 SNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLT 731

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P    A    G  + AL      +  L +A    P     +          +     +  
Sbjct: 732 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPV 791

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           L     L      A         ++   ++      +A  L ++ + A        Q L 
Sbjct: 792 LCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALE 851

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR 625
             ++ L  L Q   +      A          L   ++ +  L    G+    +  +   
Sbjct: 852 TVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASN 911

Query: 626 ASCYHAIGEYREAV 639
                A+   +  +
Sbjct: 912 G-GKQALETVQRLL 924

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score =  117 bits (294), Expect = 2e-27
 Identities = 39/271 (14%), Positives = 74/271 (27%), Gaps = 13/271 (4%)

Query: 382 DFRLSRGIAQVNEGKYASAI-SIFDQILKEDPMYPEALIGRGTARAFQRE-------LEA 433
           D   +  +     G        I  ++      + EAL+G G   A           L  
Sbjct: 44  DASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQHPAALGT 103

Query: 434 AISDFTEAIQSNPSAGEA-----WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
               +   I + P A         K+   ARA      +A +     L+ +      + +
Sbjct: 104 VAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPPLQLDTGQLVKIAK 163

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           RG V        +      A + L      A         ++   ++      +A  L  
Sbjct: 164 RGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTP 223

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
             + A        Q L   ++ L  L Q   +      A          L   ++ +  L
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
               G+ P  +  +        A+   +  +
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLL 314

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 63.1 bits (153), Expect = 2e-10
 Identities = 27/246 (10%), Positives = 62/246 (25%), Gaps = 21/246 (8%)

Query: 386  SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            S    +         + +  Q          A+      +     ++  +    +     
Sbjct: 808  SNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 867

Query: 446  PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---- 501
            P    A       +       +A++ + + L        +  ++ +         A    
Sbjct: 868  PDQVVAIASNIGGK-------QALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETV 920

Query: 502  --AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
               +  L     L  +   A         ++   ++      +   L  N + A      
Sbjct: 921  QRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQVVAIAS-NG 979

Query: 560  FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
              Q L +    L      L      +   +   + L  LG  + A+  +  GL   P  I
Sbjct: 980  GKQALESIVAQLSRPDPAL------AALTNDHLVALACLGG-RPAMDAVKKGLPHAPELI 1032

Query: 620  ECLYLR 625
              +  R
Sbjct: 1033 RRVNRR 1038

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 12/134 (8%)

Query: 30  DSVMASAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHV 88
             V+A A     + A    L    + + +L      +   +  I +       LE  + +
Sbjct: 190 AQVVAIASNNGGKQA----LETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRL 245

Query: 89  IRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQ 142
           +    +A  L P  + A         AL   +  L V  +          A+      KQ
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQ 305

Query: 143 FLE-LEELLTAAKQ 155
            LE ++ LL    Q
Sbjct: 306 ALETVQRLLPVLCQ 319

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L    + A         AL   +  L V  + + 
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHG 627

Query: 132 H------ALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                  A+      KQ LE ++ LL    Q   +T + 
Sbjct: 628 LTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L         ++  I +       LE  + ++    +A  L P  + 
Sbjct: 609 KQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVV 668

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE------HALHQSADLKQFLE-LEELLTAAKQ 155
           A    G    AL   +  L V  + +        A+  +   KQ LE ++ LL    Q
Sbjct: 669 AIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQ 726

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%)

Query: 49  LRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           L    + + +L      + E +  I +       LE  + ++    +A  L P  + A  
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739

Query: 108 LKGCAFSALGRKEEALSVWEKG------YEHALHQSADLKQFLE-LEELLTAAKQDRSVT 160
             G    AL   +  L V  +          A+  +   KQ LE ++ LL    QD  +T
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLT 799

Query: 161 CEYDV 165
               V
Sbjct: 800 LAQVV 804

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 10/55 (18%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +       LE  + ++    +A  L P  + A         AL   +  L V  +
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ 353

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +L    + + +L      + + +  I +       LE  + ++    +A  L P  + 
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A    G    AL   +  L V  + + 
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHG 593

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 6/86 (6%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK----- 128
           +       LE  + ++    +A  L P  + A    G    AL   +  L V  +     
Sbjct: 265 SNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT 324

Query: 129 -GYEHALHQSADLKQFLELEELLTAA 153
                A+      KQ LE  + L   
Sbjct: 325 PDQVVAIASHDGGKQALETVQRLLPV 350

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 6/98 (6%)

Query: 72  ICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
           I +       LE  + ++    +A  L P  + A    G    AL   +  L V  + + 
Sbjct: 331 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 390

Query: 132 ------HALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
                  A+  +   +    ++ LL    Q   +T + 
Sbjct: 391 LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQ 428

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 8/116 (6%)

Query: 48  SLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAY 106
           +L    + + +L         ++  I +       L   + ++    +A  L P  + A 
Sbjct: 475 ALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAI 534

Query: 107 ILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFLE-LEELLTAAKQ 155
              G    AL   +  L V  +          A+  +   KQ LE ++ LL    Q
Sbjct: 535 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 590

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 69  IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  I +       LE  + ++    +   L P  + A         AL   ++ L V  +
Sbjct: 429 VVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488

Query: 129 ------GYEHALHQSADLKQFLE-LEELLTAAKQDRSVTCEY 163
                     A+  +   KQ L  ++ LL    Q   +T + 
Sbjct: 489 AHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  151 bits (383), Expect = 5e-41
 Identities = 35/251 (13%), Positives = 80/251 (31%), Gaps = 15/251 (5%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +  P   EA    G  +A   +   AI     A   
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI---------------LHER 489
           +P           +      +  A+  L   L  +P    +               +   
Sbjct: 85  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                   ++      L A ++++  +   +  LG+  +    Y  A     +A++L  +
Sbjct: 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
             + W  L     +    ++AL+   + L I+  + +  +   +    + Q+  A K L 
Sbjct: 205 DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLV 264

Query: 610 SGLGIDPSNIE 620
             + +      
Sbjct: 265 RAIYMQVGGTT 275

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  143 bits (364), Expect = 2e-38
 Identities = 45/260 (17%), Positives = 91/260 (35%), Gaps = 15/260 (5%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G      + +        MY E  +  G +      L  A   F    Q+ P   EAW+ 
Sbjct: 1   GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  +A   +   AI  L+ A   +P    +     + +    + NAA+  L A +    
Sbjct: 61  LGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 120

Query: 515 ENKSAY---------------TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           + +                         ++  EY++       A++++ N  +    L  
Sbjct: 121 QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI 619
            Y    N + A   L++ + +    ++ ++  G  L    + ++A+   +  L I+P  +
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240

Query: 620 ECLYLRASCYHAIGEYREAV 639
             +Y  A  Y  + +Y  A 
Sbjct: 241 RVMYNMAVSYSNMSQYDLAA 260

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score =  108 bits (271), Expect = 6e-26
 Identities = 28/218 (12%), Positives = 71/218 (32%), Gaps = 20/218 (9%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEA---------------LIGRGTARAFQR 429
            +  ++  NE    +A++     L   P Y +                +       A   
Sbjct: 93  AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           E     +    A++ NP+  +     G           A  +L +A+E  P+ A + ++ 
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKL 212

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G           A++  +  + ++         + ++ S++ +Y  A +  ++AI +   
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
                G  ++       +    +  + +L +  R    
Sbjct: 273 GTTPTGEASR-----EATRSMWDFFRMLLNVMNRPDLV 305

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++   + E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 31  MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 91  VHAALAVSHTNEHNANAALASLRA 114

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 7/55 (12%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           +  F ++    ++        AL+++P   Q +   G  ++     + A +   +
Sbjct: 143 SEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 6/55 (10%), Positives = 13/55 (23%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +L          +   Q  P   +A+   G   +   +   A+     
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  149 bits (379), Expect = 3e-40
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 17/269 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 68  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 127

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 128 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187

Query: 494 ----FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+LD  +        LG+  +  GEY KA +    A+ + 
Sbjct: 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 247

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 307

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYR 636
               L +   +        +    I    
Sbjct: 308 FLEALNMQRKSRGPRGEGGAMSENIWSTL 336

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  109 bits (275), Expect = 3e-26
 Identities = 34/270 (12%), Positives = 81/270 (30%), Gaps = 26/270 (9%)

Query: 396 KYASAISI----FDQILKEDPMYPEALIGRGTARAF-QRELEAAISDFTEAIQSNPSAG- 449
           ++  A S      D   K      E       A  +     +   + + +  Q       
Sbjct: 2   EFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPL 61

Query: 450 ---EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    G  R   G+   A+     A++ +P   +     G    + +    A+  L
Sbjct: 62  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ------- 559
             C++L  +N++A   L ++ ++    ++A E     ++    +        +       
Sbjct: 122 RRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181

Query: 560 --------FYQDLANSEKALECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLS 609
                        +   +  E     + +             G+L +  G++ KA+   +
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFT 241

Query: 610 SGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           + L + P++        +      +  EAV
Sbjct: 242 AALSVRPNDYLLWNKLGATLANGNQSEEAV 271

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score =  103 bits (259), Expect = 4e-24
 Identities = 36/239 (15%), Positives = 69/239 (28%), Gaps = 40/239 (16%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---------------QR 429
           ++  ++  NE     A  I    L+  P Y   +                          
Sbjct: 136 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195

Query: 430 ELEAAISDFTEAIQSNPSAGEA--WKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
                   F  A++ +P++ +       G      GE  +A+   + AL   PN   + +
Sbjct: 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWN 255

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           + G           AV      ++L      +   LG++  ++G +++A E  L+A+ + 
Sbjct: 256 KLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK 606
           R      G      +                         +    L L  LGQ      
Sbjct: 316 RKSRGPRGEGGAMSE-----------------------NIWSTLRLALSMLGQSDAYGA 351

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 93.9 bits (234), Expect = 7e-21
 Identities = 34/181 (18%), Positives = 66/181 (36%), Gaps = 13/181 (7%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAI 442
                + +++  +     +F   ++ DP    P+   G G       E + A+  FT A+
Sbjct: 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
              P+    W + G   A   +S EA+    +ALE +P      +  GI          A
Sbjct: 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA 304

Query: 503 VEDLSACVKLDKEN-----------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL 551
           VE     + + +++           ++ ++ L LALS +G+      A  + +       
Sbjct: 305 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMF 364

Query: 552 E 552
            
Sbjct: 365 G 365

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +     +   A+ + ++ + Q  +  +         ++ E     I    + L+L P   
Sbjct: 73  RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQ 132

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
            A +    +F+    + +A  +   
Sbjct: 133 TALMALAVSFTNESLQRQACEILRD 157

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 9/55 (16%), Positives = 21/55 (38%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  Q     + +   + A+Q DP  ++A+   G   +   ++  A+S   +
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  149 bits (378), Expect = 5e-40
 Identities = 43/258 (16%), Positives = 91/258 (35%), Gaps = 12/258 (4%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG     I   +  + +DP   EA    G  +A     +AAI      ++ 
Sbjct: 69  FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P+  +A      +        +A + L   ++  P    ++  +       +  + +  
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188

Query: 505 DLSACVKL------------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           D S    +            D  +    T LG+     GE+ +A +A   A+ +      
Sbjct: 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS 248

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            W  L     +   SE+A+E   + L I   F ++ +  G+    LG +++A+ +  + L
Sbjct: 249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL 308

Query: 613 GIDPSNIECLYLRASCYH 630
            +   +     +      
Sbjct: 309 SLQRKSRNQQQVPHPAIS 326

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  140 bits (354), Expect = 1e-36
 Identities = 47/267 (17%), Positives = 89/267 (33%), Gaps = 12/267 (4%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +S      N+   +++   +    +            G  R  + +L   I     AI  
Sbjct: 35  ISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ 94

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +P   EAW+  G  +A       AI  L + LE +PN+   L    +          A E
Sbjct: 95  DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACE 154

Query: 505 DLSACVKLDKENKSAYTYLGL----------ALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            L   +K + + K                  +       +  +E +L+A   + + ++  
Sbjct: 155 ALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPD 214

Query: 555 GH--LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L   +       +A++     L +       ++  G  L    + ++A++  +  L
Sbjct: 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAV 639
            I P  I   Y        +G YREAV
Sbjct: 275 EIQPGFIRSRYNLGISCINLGAYREAV 301

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  125 bits (317), Expect = 9e-32
 Identities = 42/256 (16%), Positives = 85/256 (33%), Gaps = 13/256 (5%)

Query: 397 YASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR 455
             S    +D++  E + M     I        Q  + A+   +    ++           
Sbjct: 12  VESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEE 71

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           G  R   G+    I  +  A+  +P  A+     GI   + ++  AA+  L  C++L   
Sbjct: 72  GLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN 131

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ 575
           N  A   L ++ ++    + A EA    I+ +  +     +            K+     
Sbjct: 132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS 191

Query: 576 QVLYIDKRFSKAYHL------------RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
            +  + + + +A H              G+L H  G+  +AI   ++ L + P +     
Sbjct: 192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWN 251

Query: 624 LRASCYHAIGEYREAV 639
              +         EAV
Sbjct: 252 RLGATLANGDRSEEAV 267

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  121 bits (306), Expect = 3e-30
 Identities = 38/223 (17%), Positives = 83/223 (37%), Gaps = 12/223 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            GI Q       +AI    + L+  P   +AL+    +       + A       I+ NP
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNP 164

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLS----------KALEFEPNS--ADILHERGIVNF 494
                 K +  +        ++  D S          +A     +    D+    G++  
Sbjct: 165 KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              +FN A++  +A + +  E+ S +  LG  L++    ++A EA+ +A+++   F+ + 
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSR 284

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG 597
            +L     +L    +A+      L + ++      +    + G
Sbjct: 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score =  114 bits (288), Expect = 6e-28
 Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 20/232 (8%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPN-- 481
             E E A +      +        W    +R   +     ++   +    K   F     
Sbjct: 2   AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61

Query: 482 --SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                   E G+   K  D    +  + A +  D  +  A+ +LG+  +     + A  A
Sbjct: 62  FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA 121

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             + ++L  N L+A   L   Y + ++ + A E L+  +  + ++      +        
Sbjct: 122 LQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTR 181

Query: 600 QHKKAIKDLSSGLGIDPSNIECLYL------------RASCYHAIGEYREAV 639
           +  K+  D S   G+    +E  +                 +H  GE+  A+
Sbjct: 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 89.0 bits (221), Expect = 3e-19
 Identities = 34/193 (17%), Positives = 57/193 (29%), Gaps = 38/193 (19%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMY--PEALIGRGTARAFQRELEAAISDFTEAIQSN 445
             + V+         ++ +   ++     P+   G G       E   AI  F  A+   
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P     W R G   A    S EA++  ++ALE +P                         
Sbjct: 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR--------------------- 282

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-- 563
                        +   LG++  ++G Y++A    L A+ L R                 
Sbjct: 283 -------------SRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNI 329

Query: 564 LANSEKALECLQQ 576
            A    AL  + Q
Sbjct: 330 WAALRIALSLMDQ 342

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 11/85 (12%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           K     +    I  +++ + Q     +         ++ E  +  I    + L+L P  L
Sbjct: 74  KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133

Query: 104 QAYILKGCAFSALGRKEEALSVWEK 128
           +A +    +++    +++A    + 
Sbjct: 134 KALMALAVSYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 41.6 bits (98), Expect = 7e-04
 Identities = 7/55 (12%), Positives = 18/55 (32%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                  +       I   + A+  DP   +A+   G   +    ++ A+   ++
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  126 bits (320), Expect = 4e-33
 Identities = 40/235 (17%), Positives = 80/235 (34%), Gaps = 3/235 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
               V  G +    +   +  K      +A I  G     +   E A     +A++ +PS
Sbjct: 11  SSGLVPRGSHMGDQN-PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS 69

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS 507
           + +A            E   A ++  KAL  +  +A +L+  G   ++ K +  A + L 
Sbjct: 70  SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129

Query: 508 ACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
              +  L  E    +  LGL    + +  +A+E   K+++L+RN       +        
Sbjct: 130 EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189

Query: 566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
               A +          + +++  L   L         A         + P ++E
Sbjct: 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score =  115 bits (290), Expect = 3e-29
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 2/213 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R       +  +  +    A +A+ + G      G + +A   L KALE +P+SAD   
Sbjct: 16  PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-- 545
              +V     +   A E+    +  D  N       G  L     Y++A +  L+A Q  
Sbjct: 76  ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDT 135

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI 605
           L       + +L      +    +A E  ++ L +++           LL+   ++  A 
Sbjct: 136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195

Query: 606 KDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           +           N   L L         +   A
Sbjct: 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 97.3 bits (243), Expect = 7e-23
 Identities = 27/175 (15%), Positives = 53/175 (30%), Gaps = 2/175 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-- 444
             +    E +   A   + + L  D      L   G     Q+  E A     EA Q   
Sbjct: 77  LAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTL 136

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
            P     ++  G     + +  +A +   K+L    N   +  E   + +K +++  A +
Sbjct: 137 YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
                 +   +N  +            +   A    L+  +L    LE      +
Sbjct: 197 YYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
            + +    L   G +   ++  LK  +      +A+  L   Y    N+E+A   L++ L
Sbjct: 6   HHHHHSSGLVPRGSHM-GDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            ID   + A+    ++     + K A ++    L  D  N   L       +    Y EA
Sbjct: 65  EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124

Query: 639 V 639
            
Sbjct: 125 Y 125

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  122 bits (309), Expect = 3e-32
 Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 18/207 (8%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEA----------------LIGRGT 423
           SVD  L +  A +  G+   A+S F Q +  +    E                       
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELAL 62

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
           A    R  + A   + E +Q  P+  +  +   + +   G+  +A++   K L+ E ++ 
Sbjct: 63  AYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

Query: 484 DILHERGIVNF-KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
                 G   +   +     +E     +    + + A    GL+      Y+KA  +  K
Sbjct: 123 AANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEK 569
            I    +  EA   L +  +      +
Sbjct: 183 VILRFPST-EAQKTLDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  114 bits (288), Expect = 2e-29
 Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 19/206 (9%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             + ++ + +A     +   A+S F + I  N    E +                     
Sbjct: 3   SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN----------------- 45

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
              +    S+ +  E  +   K ++++ A       ++    N              G+ 
Sbjct: 46  -VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQE 104

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE-KALECLQQVLYIDKRFSKAYHLRG 592
           K A   + K +QL+ + L A   L  +Y   A  E K LE   + L    +   A +  G
Sbjct: 105 KDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDG 164

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSN 618
           L      +++KA   L   +   PS 
Sbjct: 165 LSKLFTTRYEKARNSLQKVILRFPST 190

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score =  109 bits (273), Expect = 2e-27
 Identities = 24/191 (12%), Positives = 57/191 (29%), Gaps = 19/191 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           +   ++  A    G++ +A+    + +    +  ++ +   +                  
Sbjct: 5   DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD----------------- 47

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
            K  + +    T L LA      Y KA   + + +Q   N ++      +        + 
Sbjct: 48  -KNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASC 628
           AL   +++L ++     A    G   +   +  KK ++     L          Y     
Sbjct: 107 ALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLS 166

Query: 629 YHAIGEYREAV 639
                 Y +A 
Sbjct: 167 KLFTTRYEKAR 177

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 96.0 bits (239), Expect = 7e-23
 Identities = 24/166 (14%), Positives = 51/166 (30%), Gaps = 2/166 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
           T + K+  IS        +A      Y  A   + ++L++ P   + L      +  + +
Sbjct: 44  TNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ 103

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAIQDLSKALEFEPNSADILHER 489
            + A+  + + +Q       A    G       E   + ++   K L          +  
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           G+       +  A   L   +      ++  T L   L    E  +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKT-LDKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 16/138 (11%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW----------------GHLTQFYQ 562
                  A    G+  +A     + I L+ +  E +                  L   Y+
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECL 622
              N +KA    +++L               +    GQ K A++     L ++  N+   
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN 125

Query: 623 YLRASCYHAIGEYREAVI 640
               + Y+   E  +  +
Sbjct: 126 IFLGNYYYLTAEQEKKKL 143

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 10/78 (12%), Positives = 25/78 (32%)

Query: 51  NWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKG 110
           + ++     +         +     A  Y +   +        + LQ  P  +       
Sbjct: 36  DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA 95

Query: 111 CAFSALGRKEEALSVWEK 128
                 G++++AL ++EK
Sbjct: 96  EMQVCRGQEKDALRMYEK 113

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRA-FCYSQLELHKHVIRDCDKALQLDPTLLQAYI 107
           LR + K +++ ++    +           + Y   E  K  +    K L     +  A  
Sbjct: 108 LRMYEKILQL-EADNLAAN-----IFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARY 161

Query: 108 LKGCAFSALGRKEEALSVWEKGYE 131
             G +     R E+A +  +K   
Sbjct: 162 RDGLSKLFTTRYEKARNSLQKVIL 185

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
               RN+ KA      LL      +  +   A         K  +R  +K LQL+   L 
Sbjct: 64  YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA 123

Query: 105 AYILKGCAFSALGRKE-EALSVWEK 128
           A I  G  +     +E + L    K
Sbjct: 124 ANIFLGNYYYLTAEQEKKKLETDYK 148

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score =  122 bits (308), Expect = 7e-32
 Identities = 33/213 (15%), Positives = 69/213 (32%), Gaps = 12/213 (5%)

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            +  +  G         +AA++ F  A++ NP   EA     + +  LG    A+++   
Sbjct: 5   EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKT 64

Query: 475 ALEFEPNSADILHERGIV-----------NFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
            +   P                                A+  L    +++      +   
Sbjct: 65  LVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQR 124

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           GL  + +GE  KAE +  +A+ L+ +  E    L + Y  +   ++AL    + L    +
Sbjct: 125 GLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
                      L   G+ ++A +  +       
Sbjct: 184 DLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 12/174 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-----------RAFQRELEAAI 435
               Q+  G    A+     ++   P Y    +    A              +  LE A+
Sbjct: 45  LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
           S   +A + NP       +RG   A LGE  +A   L +AL  E    +I      +   
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALAELYLS 163

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
               + A+   +  ++   ++         AL   G+ ++A  A         +
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 89.5 bits (223), Expect = 1e-20
 Identities = 39/209 (18%), Positives = 67/209 (32%), Gaps = 49/209 (23%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           +Q+     +   R G    ALG    A+    +AL+  P   +                 
Sbjct: 1   MQTAE---QNPLRLGVQLYALGRYDAALTLFERALKENPQDPE----------------- 40

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
                            A  +L      +G    A E     +     +L  +  L++ Y
Sbjct: 41  -----------------ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 562 QDLANS-----------EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSS 610
             L              E+AL  L+    ++ R++  +  RGL+   LG+  KA   L  
Sbjct: 84  VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

Query: 611 GLGIDPSNIECLYLRASCYHAIGEYREAV 639
            L ++    E     A  Y ++G   EA+
Sbjct: 144 ALALED-TPEIRSALAELYLSMGRLDEAL 171

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 7/82 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A+ + D+   +          A  Y  +      +    KAL+  P  L   +    A 
Sbjct: 143 QALALEDT--PEIR-----SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195

Query: 114 SALGRKEEALSVWEKGYEHALH 135
              G+ EEA       + H  H
Sbjct: 196 LLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 70  QDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKG 129
           Q+          L  +   +   ++AL+ +P   +A          LG    A     + 
Sbjct: 6   QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPA----LEN 61

Query: 130 YEHAL 134
            +  +
Sbjct: 62  GKTLV 66

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 9/93 (9%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +A++  +    ++         A    +L L    + +    +   P  L  Y++   A+
Sbjct: 30  RALKE-NPQDPEAL-----YWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83

Query: 114 SALGRKEEALSVWEKGYEHALHQSADLKQFLEL 146
            AL R+ E     +   E AL   + LK    +
Sbjct: 84  VALYRQAEDRERGKGYLEQAL---SVLKDAERV 113

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  120 bits (303), Expect = 1e-31
 Identities = 26/169 (15%), Positives = 60/169 (35%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +GI+    G+Y+ A+ + +Q+   D    +  +  G A      ++        ++   P
Sbjct: 14  KGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP 73

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
              +     G     + +   A+  L K  E  P + ++    G+       F+ A++  
Sbjct: 74  DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
              + L       +  +  +   +G +++A     KA +LD        
Sbjct: 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  119 bits (300), Expect = 3e-31
 Identities = 30/183 (16%), Positives = 65/183 (35%)

Query: 442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
           + ++      ++ +G + A  G   +A+  L +  + +    D+    GI   K    + 
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY 561
             E L   +    +N    T LGL    + +Y  A    +K  + +         L    
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
            +L   ++A++  +  L +     K +         +G+H++A+        +D      
Sbjct: 121 DNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180

Query: 622 LYL 624
           L L
Sbjct: 181 LAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score =  114 bits (287), Expect = 2e-29
 Identities = 31/180 (17%), Positives = 70/180 (38%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
           D +       +G + A       A+    +   ++    +     G A    G      +
Sbjct: 4   DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
            L ++L   P++  +    G+   + + ++ AV  L    + +  N +    LG+AL ++
Sbjct: 64  LLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL 123

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G + +A ++   A+ L  N  +    +   Y+ +   E+AL   ++   +D+  S    L
Sbjct: 124 GRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELAL 183

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 87.1 bits (217), Expect = 6e-20
 Identities = 23/130 (17%), Positives = 46/130 (35%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
           +  D   +  Y   G++ +  G Y +A     +    D   ++   HL   Y      ++
Sbjct: 1   MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDR 60

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
             E L++ L       K   + GL    + ++  A+  L      +P N    +      
Sbjct: 61  GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 630 HAIGEYREAV 639
             +G + EA+
Sbjct: 121 DNLGRFDEAI 130

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 5/55 (9%), Positives = 20/55 (36%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           ++   +++   +   +   ++    D   +   +  G A+   G  +    + E+
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           +++        +             Y Q++ +   +    K  + +P         G A 
Sbjct: 67  RSLAD-APDNVKVA-----TVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120

Query: 114 SALGRKEEALSVWEK 128
             LGR +EA+  ++ 
Sbjct: 121 DNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 43.6 bits (104), Expect = 5e-05
 Identities = 7/80 (8%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +    +     D+            +    Y +           +++L   P  ++   +
Sbjct: 28  VMLLEQVYDA-DAFDVDVA-----LHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATV 81

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G  +  + + + A+ +  K
Sbjct: 82  LGLTYVQVQKYDLAVPLLIK 101

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 14/75 (18%), Positives = 23/75 (30%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           K     + +                   L      I     AL L P   + +     ++
Sbjct: 101 KVAEA-NPINFNVR-----FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154

Query: 114 SALGRKEEALSVWEK 128
             +GR EEAL  ++K
Sbjct: 155 EQMGRHEEALPHFKK 169

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  123 bits (311), Expect = 2e-30
 Identities = 39/234 (16%), Positives = 85/234 (36%), Gaps = 20/234 (8%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSNPSAGEAW 452
           + +    +   +++L    +  +AL+ +G A          A    ++A++  P   EAW
Sbjct: 81  QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140

Query: 453 KRRGQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVN--FKFKDFNAAVE 504
            + G+     G+   A    S AL    N         +L +    +     +    +V 
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVR 200

Query: 505 DLSACVKLDKENKSAYTYLGLALSS--------IGEYKKAEEAHLKAIQLDR---NFLEA 553
                V++D  +  ++  LG A  S            ++A  A+ +A ++DR   +  + 
Sbjct: 201 QAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDL 260

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
             +    ++   +  +ALE   Q   +D  + +       LL  L +    ++ 
Sbjct: 261 HLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score =  122 bits (306), Expect = 1e-29
 Identities = 47/237 (19%), Positives = 89/237 (37%), Gaps = 22/237 (9%)

Query: 424 ARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNS 482
            +  Q E+E  +    E + S     +A   +G+A     + S EA   LSKA++ EP  
Sbjct: 77  QQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL 136

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL- 541
            +  ++ G V +K  D  +A    S  +   K NK +   L + L  +      E +   
Sbjct: 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-NKVSLQNLSMVLRQLQTDSGDEHSRHV 195

Query: 542 --------KAIQLDRNFLEAW-----GHLTQFY---QDLANSEKALECLQQVLYIDKR-- 583
                    A+Q+D     +W      +L+ ++   Q+   S++AL    Q   +D++  
Sbjct: 196 MDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255

Query: 584 -FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                +  R  L      + +A++  S    +DP+  E           +      +
Sbjct: 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL 312

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 95.8 bits (238), Expect = 4e-21
 Identities = 40/255 (15%), Positives = 87/255 (34%), Gaps = 25/255 (9%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           Q +    M  +            + L   +  F ++     S  +A +++   +    E 
Sbjct: 28  QQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEM 84

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN-AAVEDLSACVKLDKENKSAYTYLG 524
            + +Q + + L      A  L  +G       D++  A   LS  VKL+ E   A+  LG
Sbjct: 85  EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144

Query: 525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA---------NSEKALECLQ 575
                 G+   A      A+   +N   +  +L+   + L          +   ++   +
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 576 QVLYIDKRFSKAYHLRGLLL--------HGLGQHKKAIKDLSSGLGID---PSNIECLYL 624
             + +D    +++++ G                 ++A+   +    +D    SN +    
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 625 RASCYHAIGEYREAV 639
           RA+ +     Y EA+
Sbjct: 264 RATLHKYEESYGEAL 278

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 23/220 (10%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFK 497
              Q             +A+  L +    +  L    +  FE +S +    +       +
Sbjct: 25  TGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQD--VQE 82

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY-KKAEEAHLKAIQLDRNFLEAWGH 556
           +    ++ +   +   +    A    G AL+   +Y  +AE    KA++L+   +EAW  
Sbjct: 83  EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK---------KAIKD 607
           L + Y    +   A  C    L   K    +     ++L  L              +++ 
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNK-VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201

Query: 608 LSSGLGIDPSNIECLYLRASCY--------HAIGEYREAV 639
               + +D  +    Y+  + Y              ++A+
Sbjct: 202 AKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 82.7 bits (204), Expect = 6e-17
 Identities = 27/210 (12%), Positives = 50/210 (23%), Gaps = 53/210 (25%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPE--------ALIGRGTARAFQRELEAAISDF 438
            G     +G   SA + F   L                  +   +     R +  ++   
Sbjct: 143 LGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQA 202

Query: 439 TEAIQSNPSAGEAWKRRGQARAA-----------LGESVEAIQDLSKALEFEPNSADILH 487
             A+Q +   G +W   G A  +             +++ A     K      ++ D   
Sbjct: 203 KLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD--- 259

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                                           +            Y +A E   +A  LD
Sbjct: 260 -------------------------------LHLNRATLHKYEESYGEALEGFSQAAALD 288

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQV 577
             + E      Q  + L+     LE   + 
Sbjct: 289 PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 2/117 (1%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL 431
           ++ +  S + D  L+R      E  Y  A+  F Q    DP +PE          F   L
Sbjct: 249 KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL 308

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +    +       +     R            ++       LE +P     L  
Sbjct: 309 TSLLESKGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKP--LSTLQP 363

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
            NRA  +   E +   +    +A  LDP   +    +      L R    L    K
Sbjct: 262 LNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 11/77 (14%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 54  KAIRILDSLLAQSYEIQDIC-NRAFCYSQL-ELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           K ++ ++ +L  +         +    +   +          KA++L+P L++A+   G 
Sbjct: 86  KTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGE 145

Query: 112 AFSALGRKEEALSVWEK 128
            +   G    A + +  
Sbjct: 146 VYWKKGDVTSAHTCFSG 162

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 3/92 (3%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
              +         Q L      L C +   +       A   +  +     + +K ++ +
Sbjct: 35  MMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ---EEMEKTLQQM 91

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAVI 640
              LG      + L L+    +   +Y     
Sbjct: 92  EEVLGSAQVEAQALMLKGKALNVTPDYSPEAE 123

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  117 bits (294), Expect = 3e-28
 Identities = 47/319 (14%), Positives = 90/319 (28%), Gaps = 54/319 (16%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QREL 431
           + +S  +D        +    +   A   F++ L++ P  PE   G   A          
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAAL----GESVEAIQDLSKALEFEPNSADILH 487
           + AI    +AI+ NP               +     E  E  + + +ALE  P   D+L 
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--------------- 532
                  +  + + A+E L   ++    N   +  +G    +                  
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRK 311

Query: 533 ----YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA- 587
                  A     KA + + N       L   +      E+A    Q+    +       
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 588 ---YHLRGLLLHGLGQHKKAIKDLSSGLGI------------------------DPSNIE 620
                     L+ +    KAI     G+ I                        + ++ E
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431

Query: 621 CLYLRASCYHAIGEYREAV 639
            L++ A       + ++A 
Sbjct: 432 ALHVLAFLQELNEKMQQAD 450

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  113 bits (284), Expect = 7e-27
 Identities = 42/334 (12%), Positives = 98/334 (29%), Gaps = 45/334 (13%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           F W++++  ++      K       +++             +  +G+  +A+    +  +
Sbjct: 20  FTWNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEE 79

Query: 410 ---------EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--------SAGEAW 452
                     +                   L        +               + E  
Sbjct: 80  LIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139

Query: 453 KRRGQARAALGES--VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN---AAVEDLS 507
              G  R   G +    A     KALE +P + +      I +++  ++     A++ L 
Sbjct: 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199

Query: 508 ACVKLDKENKSAYTYLGLALSSI----GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
             ++L+ +N+     L L L  +     E  + E+   +A++      +      +FY+ 
Sbjct: 200 QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRR 259

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-------------------A 604
               +KA+E L++ L      +  +   G                              A
Sbjct: 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA 319

Query: 605 IKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           +  L      + +      + AS +    +Y EA
Sbjct: 320 VAHLKKADEANDNLFRVCSILASLHALADQYEEA 353

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score =  105 bits (263), Expect = 3e-24
 Identities = 43/277 (15%), Positives = 80/277 (28%), Gaps = 51/277 (18%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTA----RAFQRELEAAISDFTEAIQSNPSA 448
           N     +AI    Q ++ +P      +         R    E         EA++  P  
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV---------------- 492
            +  +   +      E  +AI+ L KALE+ PN+A +  + G                  
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGM 306

Query: 493 ---NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
                  +    AV  L    + +       + L    +   +Y++AE    K    +  
Sbjct: 307 YGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT 366

Query: 550 FLEAWG---HLTQFYQDLANSE-KALECLQQVLYIDK----------------------- 582
            +           F       E KA+    + + I++                       
Sbjct: 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKN 426

Query: 583 -RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
              S+A H+   L     + ++A +D   GL      
Sbjct: 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLI 463

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 85.0 bits (210), Expect = 1e-17
 Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 47/247 (19%)

Query: 393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW 452
              +      + ++ L++ P   + L         + E + AI    +A++  P+     
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284

Query: 453 -------------------KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
                                    R  L     A+  L KA E   N   +      ++
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344

Query: 494 FKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQL--- 546
                +  A          +    +       Y    L  +    KA    ++ +++   
Sbjct: 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404

Query: 547 ---------------------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
                                +    EA   L    +     ++A E  ++ L       
Sbjct: 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464

Query: 586 KAYHLRG 592
            A    G
Sbjct: 465 SASSWNG 471

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score =  106 bits (266), Expect = 3e-26
 Identities = 32/228 (14%), Positives = 62/228 (27%), Gaps = 37/228 (16%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             + +    +  +    Y  A +  +  LK DP    A + R     + +  + A   F 
Sbjct: 7   VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFR 66

Query: 440 EAIQSNPSAGEAWKRRGQA-RAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKF 496
           +A+   P + E     G      L    E++    KAL     P                
Sbjct: 67  QALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYI------------ 114

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGH 556
                                 A    G+  +  G++  AE    +++     F  A+  
Sbjct: 115 ----------------------ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA 604
           L +          A    ++     +       L G  +     + +A
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQA 200

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 92.3 bits (230), Expect = 2e-21
 Identities = 26/200 (13%), Positives = 52/200 (26%), Gaps = 4/200 (2%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           +          +         +  +A   +  AL+ +P +      R  +    K  + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAHLKAIQ--LDRNFLEAWGHLTQ 559
            E     + +  ++       G  L   +    ++     KA+          A  +   
Sbjct: 62  QESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS-N 618
                     A   L++ L    +F  A+          GQ   A               
Sbjct: 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

Query: 619 IECLYLRASCYHAIGEYREA 638
            + L L      A+G  + A
Sbjct: 182 ADDLLLGWKIAKALGNAQAA 201

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  109 bits (272), Expect = 6e-25
 Identities = 32/186 (17%), Positives = 75/186 (40%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
            P + ++L      +  Q  +E A+  + +A++  P    A           G+  EA+ 
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
              +A+   P  AD     G    + +D   A++  +  ++++     A++ L       
Sbjct: 65  HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS 124

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G   +A  ++  A++L  +F +A+ +L    Q + +     E +++++ I     +   L
Sbjct: 125 GNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 184

Query: 591 RGLLLH 596
             +  H
Sbjct: 185 PSVHPH 190

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  106 bits (264), Expect = 5e-24
 Identities = 42/257 (16%), Positives = 87/257 (33%), Gaps = 3/257 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
               +  +G    A+ ++ + L+  P +  A     +    Q +L+ A+  + EAI+ +P
Sbjct: 15  LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           +  +A+   G     + +   A+Q  ++A++  P  AD       ++    +   A+   
Sbjct: 75  TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASY 134

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA--WGHLTQFYQDL 564
              +KL  +   AY  L   L  + ++   +E   K + +  + LE      +   +  L
Sbjct: 135 RTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSML 194

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-DPSNIECLY 623
                         + +    K   L           K +   L  G    D  N    +
Sbjct: 195 YPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSH 254

Query: 624 LRASCYHAIGEYREAVI 640
           L  S        +  V 
Sbjct: 255 LMQSIPGMHNPDKFEVF 271

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score =  105 bits (262), Expect = 1e-23
 Identities = 37/201 (18%), Positives = 74/201 (36%), Gaps = 6/201 (2%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           S P+  ++       +   G   EA++   KALE  P  A        V  +      A+
Sbjct: 4   SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
                 +++      AY+ +G  L  + + + A + + +AIQ++  F +A  +L   ++D
Sbjct: 64  MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE--- 620
             N  +A+   +  L +   F  AY      L  +       + +   + I    +E   
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNR 183

Query: 621 ---CLYLRASCYHAIGEYREA 638
                   +  Y     +R+A
Sbjct: 184 LPSVHPHHSMLYPLSHGFRKA 204

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 85.6 bits (211), Expect = 2e-17
 Identities = 25/121 (20%), Positives = 50/121 (41%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           +   L       G  ++A   + KA+++   F  A  +L    Q     ++AL   ++ +
Sbjct: 11  SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            I   F+ AY   G  L  +   + A++  +  + I+P+  +     AS +   G   EA
Sbjct: 71  RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130

Query: 639 V 639
           +
Sbjct: 131 I 131

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 38/91 (41%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
              ++  +L    ++  N E+A+   ++ L +   F+ A+     +L   G+ ++A+   
Sbjct: 7   THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
              + I P+  +      +    + + + A+
Sbjct: 67  KEAIRISPTFADAYSNMGNTLKEMQDVQGAL 97

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.6 bits (107), Expect = 4e-05
 Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 19/121 (15%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           L ++ +AIR +    A +Y      N      +++  +  ++   +A+Q++P    A+  
Sbjct: 63  LMHYKEAIR-ISPTFADAY-----SNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116

Query: 109 KGCAFSALGRKEEALSVWEKGYE-------------HALHQSADLKQFLELEELLTAAKQ 155
                   G   EA++ +    +             H L    D   + E  + L +   
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176

Query: 156 D 156
           D
Sbjct: 177 D 177

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 41.7 bits (97), Expect = 7e-04
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 8/118 (6%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDIC-NRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 19  KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 78

Query: 105 AYILKGCAFSALGRKEEALSVWEK------GYEHALHQSAD-LKQFLELEELLTAAKQ 155
           AY   G     +   + AL  + +       +  A    A   K    + E + + + 
Sbjct: 79  AYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 97.5 bits (243), Expect = 2e-23
 Identities = 33/196 (16%), Positives = 61/196 (31%), Gaps = 35/196 (17%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVED 505
               A+ +RG       +   AI+DL +AL     N        G+   +FK F      
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL---QFKLFACE--- 122

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                            +    +   E+KKAEE    A  +                  +
Sbjct: 123 -------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHS 157

Query: 566 NSEKALECLQQVLYID 581
             +KA+EC+ +    +
Sbjct: 158 KIDKAMECVWKQKLYE 173

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 82.1 bits (203), Expect = 5e-18
 Identities = 27/184 (14%), Positives = 53/184 (28%), Gaps = 26/184 (14%)

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G   A   +   A+   S     +   + I    G +    K+   A +  +  +  DK
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
               AY   G+      +Y  A +   +A+   R      G+    Y+ L    K   C 
Sbjct: 69  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLR------GNQLIDYKILGLQFKLFAC- 121

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
                      +  +    +     + KKA + L+    +           +    A+  
Sbjct: 122 -----------EVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-----HSKIDKAMEC 165

Query: 635 YREA 638
             + 
Sbjct: 166 VWKQ 169

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 70.5 bits (173), Expect = 5e-14
 Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 19/137 (13%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           +    G+  +   ++K A +A                ++   Y  L N  +A +   + +
Sbjct: 8   SLWNEGVLAADKKDWKGALDAFSAVQD---PHSRICFNIGCMYTILKNMTEAEKAFTRSI 64

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLS----------------SGLGIDPSNIECL 622
             DK  + AY  RG+L +   ++  AIKDL                  GL       E L
Sbjct: 65  NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124

Query: 623 YLRASCYHAIGEYREAV 639
           Y  A  Y    E+++A 
Sbjct: 125 YNIAFMYAKKEEWKKAE 141

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQA 105
               ++W  A+    ++      I    N    Y+ L+      +   +++  D  L  A
Sbjct: 16  AADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA 73

Query: 106 YILKGCAFSALGRKEEALSVWEK 128
           Y  +G  +    + + A+   ++
Sbjct: 74  YFQRGMLYYQTEKYDLAIKDLKE 96

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 25/150 (16%), Positives = 44/150 (29%), Gaps = 38/150 (25%)

Query: 376 SKSISVDFRLS-----RGIAQVNEGKYASAISIFDQILKEDP----------------MY 414
           ++SI+ D  L+     RG+      KY  AI    + L +                    
Sbjct: 61  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFA 120

Query: 415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSK 474
            E L       A + E + A      A                      +  +A++ + K
Sbjct: 121 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWK 168

Query: 475 ALEFEPNSADI-----LHERGIVNFKFKDF 499
              +EP    +      +ER +     KD+
Sbjct: 169 QKLYEPVVIPVGRLFRPNERQVAQLAKKDY 198

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 22/92 (23%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKAL-QLDPTLLQAYIL--- 108
           +++I   D  LA +Y       R   Y Q E +   I+D  +AL QL    L  Y +   
Sbjct: 61  TRSINR-DKHLAVAY-----FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 114

Query: 109 ------------KGCAFSALGRKEEALSVWEK 128
                           ++     ++A      
Sbjct: 115 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 91.9 bits (229), Expect = 3e-22
 Identities = 26/112 (23%), Positives = 50/112 (44%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q+    + +A+  + + ++ +P        R  A +       A+ D   AI  +P
Sbjct: 18  EGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP 77

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +  +A+ R G A ++L + VEA+    KALE +P++        I   K ++
Sbjct: 78  AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.6 bits (210), Expect = 9e-20
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 34/158 (21%)

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA 536
           E +   A+ L   G    K ++F AAV      ++L+  N   +     A S +G Y  A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 537 EEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH 596
            +   +AI +D  +                                  SKAY   GL L 
Sbjct: 66  VQDCERAICIDPAY----------------------------------SKAYGRMGLALS 91

Query: 597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            L +H +A+      L +DP N             + E
Sbjct: 92  SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.2 bits (209), Expect = 1e-19
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
              + + +  E  K  G  +  +     A+    KA+E  P +A     R     K  ++
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY 62

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
             AV+D    + +D     AY  +GLALSS+ ++ +A   + KA++LD +          
Sbjct: 63  AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETY------ 116

Query: 560 FYQDLANSEKALE 572
              +L  +E  L 
Sbjct: 117 -KSNLKIAELKLR 128

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 30/124 (24%), Positives = 53/124 (42%)

Query: 409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEA 468
           +ED    E L   G  +      EAA+  + +AI+ NP+    +  R  A + LG    A
Sbjct: 6   EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

Query: 469 IQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS 528
           +QD  +A+  +P  +      G+          AV      ++LD +N++  + L +A  
Sbjct: 66  VQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125

Query: 529 SIGE 532
            + E
Sbjct: 126 KLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            KAI  L+   A  +     CNRA  YS+L  +   ++DC++A+ +DP   +AY   G A
Sbjct: 36  GKAIE-LNPANAVYF-----CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89

Query: 113 FSALGRKEEALSVWEKGYEH 132
            S+L +  EA++ ++K  E 
Sbjct: 90  LSSLNKHVEAVAYYKKALEL 109

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 60.3 bits (147), Expect = 3e-11
 Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 5/118 (4%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK   NE  + + F        K+I ++     +  +R  A    G YA A+   ++ 
Sbjct: 13  ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERA 72

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
           +  DP Y +A    G A +   +   A++ + +A++ +P           A   L E+
Sbjct: 73  ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 50.3 bits (121), Expect = 1e-07
 Identities = 13/72 (18%), Positives = 30/72 (41%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A+    + + ++   +  +  R      LG +  A++D    + IDP+  +       
Sbjct: 29  EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88

Query: 628 CYHAIGEYREAV 639
              ++ ++ EAV
Sbjct: 89  ALSSLNKHVEAV 100

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 23/60 (38%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
            D   ++     G     +   + A+      + ++P+N      RA+ Y  +G Y  AV
Sbjct: 7   EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAV 66

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 89.8 bits (224), Expect = 1e-21
 Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 34/169 (20%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +P SA+                         
Sbjct: 2   EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------------- 36

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++
Sbjct: 37  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDE 87

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           A+E  Q+ L +D R ++A++  G   +  G + +AI+     L +DP +
Sbjct: 88  AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 87.8 bits (219), Expect = 7e-21
 Identities = 46/161 (28%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 7   LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + EAW   G A    G+  EAI+   KALE +P SA+                      
Sbjct: 67  RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE---------------------- 104

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                       A+  LG A    G+Y +A E + KA++LD
Sbjct: 105 ------------AWYNLGNAYYKQGDYDEAIEYYQKALELD 133

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 86.3 bits (215), Expect = 3e-20
 Identities = 38/121 (31%), Positives = 65/121 (53%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD    EAW +L   Y    + ++A+E  Q+ L
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            +D R ++A++  G   +  G + +AI+     L +DP + E  Y   + Y+  G+Y EA
Sbjct: 63  ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122

Query: 639 V 639
           +
Sbjct: 123 I 123

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYIL 108
           +  + KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+  
Sbjct: 55  IEYYQKALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN 108

Query: 109 KGCAFSALGRKEEALSVWEK 128
            G A+   G  +EA+  ++K
Sbjct: 109 LGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 26  KALEL-DPRSAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 80  YKQGDYDEAIEYYQK 94

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 95.9 bits (238), Expect = 2e-21
 Identities = 35/236 (14%), Positives = 83/236 (35%), Gaps = 10/236 (4%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 93  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 152

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 153 NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 212

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHL------TQFYQDLANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W         T  Y D A  E+ ++   +++ +   
Sbjct: 213 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR--ASCYHAIGEYRE 637
              A++    +L   G   K    L+  L + PS+     +      Y  + E + 
Sbjct: 273 NESAWNYLKGILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 92.4 bits (229), Expect = 2e-20
 Identities = 36/215 (16%), Positives = 77/215 (35%), Gaps = 8/215 (3%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDFTEAIQSN 445
                  + +   A  +    ++ +         R    ++ Q++L   ++  T  I+  
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
           P   + W  R      L +  + ++ ++  L  +  +      R  V  +FK ++  ++ 
Sbjct: 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY 222

Query: 506 LSACVKLDKENKSAYTYLGLALSSIGEYKKAE------EAHLKAIQLDRNFLEAWGHLTQ 559
           +   +K D  N S +      +S+   Y          +  L+ I+L  +   AW +L  
Sbjct: 223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKG 282

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
             QD     K    L Q+L +    S  Y +  L+
Sbjct: 283 ILQDRGL-SKYPNLLNQLLDLQPSHSSPYLIAFLV 316

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 90.1 bits (223), Expect = 1e-19
 Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 9/208 (4%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 89  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 149 HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH------KKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++     +      ++ ++     + 
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 268

Query: 614 IDPSNIECLYLRASCYH--AIGEYREAV 639
           + P N               + +Y   +
Sbjct: 269 LVPHNESAWNYLKGILQDRGLSKYPNLL 296

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 50.1 bits (119), Expect = 1e-06
 Identities = 14/100 (14%), Positives = 39/100 (39%), Gaps = 1/100 (1%)

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  I     F + + +     Q    SE+A +  +  + ++      +H R +LL  L +
Sbjct: 87  VVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK 146

Query: 601 H-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
              + +  +++ +   P N +  + R      + +  + +
Sbjct: 147 DLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 186

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 19/178 (10%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA------RAFQRELEAAISDFTE 440
           R         + + +   DQ+LKED         R            +  LE  +    E
Sbjct: 206 RQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLE 265

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------ADILHE--R 489
            I+  P    AW          G S +    L++ L+ +P+           DI  +   
Sbjct: 266 MIKLVPHNESAWNYLKGILQDRGLS-KYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLE 324

Query: 490 GIVNFKFKDFNAAVEDLSACV-KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
              + K    N A+E       + D   K  + Y+G +L S    +     +++  + 
Sbjct: 325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHSTENDSPTNVQQEEF 382

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 96.8 bits (241), Expect = 3e-21
 Identities = 29/177 (16%), Positives = 53/177 (29%), Gaps = 2/177 (1%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           +    +     A++  P    AW     A   +G++      + + L   P   + +   
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G V +  +    A   L        E+     +LG AL   G+ + A  A+ +A QL   
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--GQHKKA 604
                  L  + + L +         QV     +   A      L       +    
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLAC 180

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 95.3 bits (237), Expect = 1e-20
 Identities = 24/170 (14%), Positives = 44/170 (25%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
                 +      ++  P    A +    A     +  A        +  +P   EA  R
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G+ R       EA   L +A +  P    I    G          AA    +   +L  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           E       L      + +++  +    +        + A        +D 
Sbjct: 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDA 172

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 89.5 bits (222), Expect = 6e-19
 Identities = 25/141 (17%), Positives = 43/141 (30%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           D    +  L A V+   ++  A+  L  A   +G+    E A  + + L     EA   L
Sbjct: 4   DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
            +         +A   LQQ               G  L   GQ + A    +    + P 
Sbjct: 64  GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123

Query: 618 NIECLYLRASCYHAIGEYREA 638
                    +    + ++R  
Sbjct: 124 EPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 86.8 bits (215), Expect = 4e-18
 Identities = 16/142 (11%), Positives = 31/142 (21%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
            +    +  L  A+   P                 D  A    +   + L   +  A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    +   + +A     +A             L    +D   +E A     +   +  
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
                          L   +  
Sbjct: 123 EEPYITAQLLNWRRRLCDWRAL 144

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 77.2 bits (190), Expect = 6e-15
 Identities = 14/109 (12%), Positives = 30/109 (27%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +  +       A++       AW  L      + ++      +Q+ L +     +A   
Sbjct: 3   ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
            G +     +H +A   L       P +              G+   A 
Sbjct: 63  LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAA 111

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 73.0 bits (179), Expect = 1e-13
 Identities = 24/143 (16%), Positives = 43/143 (30%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
               L    A++  G   +      + L   P +PEA+   G  R  Q+    A     +
Sbjct: 23  FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           A  + P         G A    G++  A    ++A +  P    I  +      +  D+ 
Sbjct: 83  ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWR 142

Query: 501 AAVEDLSACVKLDKENKSAYTYL 523
           A     +       +   A    
Sbjct: 143 ALDVLSAQVRAAVAQGVGAVEPF 165

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 8/114 (7%)

Query: 39  ARIELAK-LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKAL 96
           A + LA     + + +     +   LA      + +          + H        +A 
Sbjct: 25  AWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQAS 84

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEK------GYEHALHQSADLKQFL 144
              P      +  G A    G+ E A + + +         +   Q  + ++ L
Sbjct: 85  DAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 86.3 bits (213), Expect = 9e-19
 Identities = 34/250 (13%), Positives = 71/250 (28%), Gaps = 13/250 (5%)

Query: 395 GKYASAISIFDQILKEDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           G Y   I+   ++    P    E  +    A   QR+    +    E   S+    +A +
Sbjct: 13  GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLD---EIKPSSAPELQAVR 69

Query: 454 RRGQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVK 511
              +  A+       + +L + +    +  +   L     + F  ++ +AA+  L     
Sbjct: 70  MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANSEK 569
           L+    +    L      +     A +   K    D +                    + 
Sbjct: 130 LECMAMTVQILL-----KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           A    Q++           + +       G+ + A   L   L  D  + E L       
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS 244

Query: 630 HAIGEYREAV 639
             +G+  E  
Sbjct: 245 QHLGKPPEVT 254

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 76.3 bits (187), Expect = 2e-15
 Identities = 30/248 (12%), Positives = 69/248 (27%), Gaps = 9/248 (3%)

Query: 336 NKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEG 395
           N++     S  +   + D+    +  A+R     +  I  S +  +           +  
Sbjct: 20  NEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHS 79

Query: 396 KYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  + ++  D+ +    D      L+   +   + +  +AA+    +       A     
Sbjct: 80  RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA----- 134

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK--FKDFNAAVEDLSACVK 511
              Q    L     A ++L K  + + ++         V+     +    A         
Sbjct: 135 MTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD 194

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
                            + G ++ AE    +A+  D    E   +L    Q L    +  
Sbjct: 195 KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254

Query: 572 ECLQQVLY 579
                 L 
Sbjct: 255 NRYLSQLK 262

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 23/133 (17%), Positives = 37/133 (27%), Gaps = 5/133 (3%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAIS 436
            +       +         K   A  IF ++  +       L G+      Q   EAA  
Sbjct: 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221

Query: 437 DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD-LSKALEFEPNSADILHERGIVNFK 495
              EA+  +    E           LG+  E     LS+  +   +   I         K
Sbjct: 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK 277

Query: 496 FKDFNAAVEDLSA 508
             DF+  V   + 
Sbjct: 278 ENDFDRLVLQYAP 290

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 11/78 (14%), Positives = 30/78 (38%), Gaps = 1/78 (1%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ-R 429
             ++   S ++     +    + +G++ +A  +  + L +D  +PE LI          +
Sbjct: 190 QEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK 249

Query: 430 ELEAAISDFTEAIQSNPS 447
             E      ++   ++ S
Sbjct: 250 PPEVTNRYLSQLKDAHRS 267

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 81.9 bits (202), Expect = 2e-18
 Identities = 19/142 (13%), Positives = 41/142 (28%)

Query: 463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY 522
           G        ++   E   ++ + L+      ++   +  A     A   LD  +   +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG    ++G+Y  A  ++     +D        H  +         +A   L     +  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 583 RFSKAYHLRGLLLHGLGQHKKA 604
              +   L   +   L   K  
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 79.2 bits (195), Expect = 1e-17
 Identities = 20/145 (13%), Positives = 33/145 (22%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
           G   S       + +      E L      +      E A   F      +      +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
            G  R A+G+   AI   S     +               +  +   A   L    +L  
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEA 539
                        S +   K  +E 
Sbjct: 121 NXPEFXELSTRVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 72.6 bits (178), Expect = 2e-15
 Identities = 16/141 (11%), Positives = 35/141 (24%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
              +    ++   ++  +       L       G Y+ A         LD      +  L
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS 617
               Q +   + A+        +D    +        L   G+  +A   L     +  +
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 618 NIECLYLRASCYHAIGEYREA 638
             E   L       +   +  
Sbjct: 122 XPEFXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 7/147 (4%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
            L +         + +    E        +   G   +A          +   +      
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           G        ++ A+   S    +D        +    L   GE  +AE     A +L  N
Sbjct: 62  GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121

Query: 550 FLEAWGHLTQFYQDLANSEKALECLQQ 576
                    +F +        LE ++ 
Sbjct: 122 -------XPEFXELSTRVSSMLEAIKL 141

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 68.4 bits (167), Expect = 6e-14
 Identities = 20/105 (19%), Positives = 30/105 (28%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S    Q   G Y  A  +F  +   D       +G G  R    + + AI  ++     +
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
                      +     GE  EA   L  A E   N  +      
Sbjct: 86  IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 23/109 (21%), Positives = 34/109 (31%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G             ++  + LE    L          E A    Q +  +D   S+ +  
Sbjct: 1   GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
            G     +GQ+  AI   S G  +D       +  A C    GE  EA 
Sbjct: 61  LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAE 109

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 1/118 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 +  A  +  +L     Y+ +       C   +  +   I        +D    +
Sbjct: 31  QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCE 162
                       G   EA S      E   +     +    +  +L A K  + +  E
Sbjct: 91  FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKKEMKHE 148

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              F L  G  +   G+Y  AI  +      D   P              EL  A S   
Sbjct: 54  DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF 113

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
            A +   +  E  +   +  + L    EAI+ L K ++ E
Sbjct: 114 LAQELIANXPEFXELSTRVSSML----EAIK-LKKEMKHE 148

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 3/134 (2%)

Query: 472 LSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG 531
           L+       ++ + L+  G   ++   ++ A +   A   LD  +   +  LG    S+G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
            Y++A +++     +D N      H  + +  L + + A         +         L 
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 592 ---GLLLHGLGQHK 602
              G +L  +   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 78.6 bits (194), Expect = 2e-17
 Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 3/131 (2%)

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++       LG      G++  A++       LD      +  L    Q L   E+
Sbjct: 11  RGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQ 70

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
           AL+       +D    +           LG    A     S   +  +      L A   
Sbjct: 71  ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130

Query: 630 H---AIGEYRE 637
               A+   ++
Sbjct: 131 AMLEAVTARKD 141

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 77.9 bits (192), Expect = 3e-17
 Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 3/134 (2%)

Query: 404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
              +        E L   G  +    + + A   F      +      +   G  R +LG
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---KSAY 520
              +A+Q  S     + N           + +  D + A     +   L       ++  
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126

Query: 521 TYLGLALSSIGEYK 534
              G  L ++   K
Sbjct: 127 ARAGAMLEAVTARK 140

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 75.2 bits (185), Expect = 2e-16
 Identities = 17/98 (17%), Positives = 27/98 (27%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G  Q   GK+  A  IF  +   D       +G G  R      E A+  ++     + 
Sbjct: 24  LGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI 83

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           +         +    LG+   A      A         
Sbjct: 84  NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 14/112 (12%), Positives = 27/112 (24%)

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
                  +    E     G  +   G+  +A +        +   A      G       
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            +  A++  S    +D        +       +G+   AE     A  L   
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 18/98 (18%), Positives = 37/98 (37%)

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH 601
               L  + LE    L          + A +  Q +  +D   ++ +   G     LG +
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 602 KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           ++A++  S G  +D +     +  A C+  +G+   A 
Sbjct: 69  EQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 5/111 (4%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                 W  A +I  +L     Y+ +       C   L L++  ++       +D    +
Sbjct: 28  QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
                      LG  + A      G+  A   +A       L     A  +
Sbjct: 88  FPFHAAECHLQLGDLDGAE----SGFYSARALAAAQPAHEALAARAGAMLE 134

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 50.9 bits (122), Expect = 7e-08
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
           L  +  + +   +  +  G   +  G+   A K   +   +D  +        +C  ++G
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 634 EYREAV 639
            Y +A+
Sbjct: 67  LYEQAL 72

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 49.7 bits (119), Expect = 2e-07
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
              + L  G  + + G Y  A+  +      D   P              +L+ A S F 
Sbjct: 51  DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY 110

Query: 440 EAIQ---SNPSAGEAWKRRGQARAALGESVE 467
            A     + P+      R G    A+    +
Sbjct: 111 SARALAAAQPAHEALAARAGAMLEAVTARKD 141

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 79.8 bits (198), Expect = 2e-18
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 2/97 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ--S 444
            G+ Q + G Y  +I +F++ ++ DP   +  + +G A       E A+  +   I    
Sbjct: 12  EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
           +    + W  +  A   +       +      + E +
Sbjct: 72  DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 22/140 (15%), Positives = 38/140 (27%), Gaps = 32/140 (22%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQ 470
               PE     G  +        +I  F +AIQ +P   + W  +G+A   L    EA+ 
Sbjct: 2   VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
             +  +    +                                  NK  +     AL  I
Sbjct: 62  CYNYVINVIEDE--------------------------------YNKDVWAAKADALRYI 89

Query: 531 GEYKKAEEAHLKAIQLDRNF 550
              +   E      +L+ + 
Sbjct: 90  EGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 76.3 bits (189), Expect = 5e-17
 Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 2/109 (1%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKAL 571
           +  +N   Y   G+     G Y ++ +   KAIQLD    + W    +   +L   E+A+
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 572 ECLQQVLYI--DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           +C   V+ +  D+     +  +   L  +   +   +   +   ++  +
Sbjct: 61  DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 63.6 bits (156), Expect = 1e-12
 Identities = 14/104 (13%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
             + +  +  G++ +   ++  +++     ++LD E    +   G AL ++  Y++A + 
Sbjct: 3   DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62

Query: 540 HLKAIQL--DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID 581
           +   I +  D    + W       + +   E   E  +    ++
Sbjct: 63  YNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
                       +   I   +KA+QLDP   + +++KG A   L R EEA+  +  
Sbjct: 10  YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNY 65

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.8 bits (120), Expect = 8e-08
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 12/89 (13%)

Query: 48  SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQL--DPTLLQA 105
           S+  + KAI++ D   ++ +       +      LE ++  +   +  + +  D      
Sbjct: 25  SIDLFEKAIQL-DPEESKYW-----LMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78

Query: 106 YILKGCAFSALGRKEEALSVWEKGYEHAL 134
           +  K  A   +  KE       +  E   
Sbjct: 79  WAAKADALRYIEGKEVEA----EIAEARA 103

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 46.7 bits (112), Expect = 1e-06
 Identities = 12/60 (20%), Positives = 28/60 (46%)

Query: 580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           +  +  + Y+L G+L +  G + ++I      + +DP   +   ++    + +  Y EAV
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 78.3 bits (193), Expect = 1e-17
 Identities = 17/101 (16%), Positives = 34/101 (33%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +  G++ +     A A   F+ + +++P   EA    G  +A   +   AI     A   
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           +P           +      +  A+  L   L  +P    +
Sbjct: 81  DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 73.3 bits (180), Expect = 8e-16
 Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 4/113 (3%)

Query: 477 EFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
            FE N      +   E G+   K  +   A     A  + + E + A+  LGL  +   +
Sbjct: 7   PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEK 66

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
              A  A   A  LD   +     L   + +  N+  AL  L+  L    ++ 
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 70.6 bits (173), Expect = 6e-15
 Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 443 QSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA 501
            +NP    E     G +   L    EA        + EP   +     G+   + +    
Sbjct: 10  ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69

Query: 502 AVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF 550
           A+  L+    LD ++ + +  L ++ ++      A  +    +     +
Sbjct: 70  AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQY 118

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 24/101 (23%), Positives = 37/101 (36%)

Query: 413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL 472
           MY E  +  G +      L  A   F    Q  P   EAW+  G  +A   +   AI  L
Sbjct: 15  MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIAL 74

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + A   +P    +     + +    + NAA+  L A +   
Sbjct: 75  NHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 1/103 (0%)

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             +++     GL++  +    +A  A     Q +    EAW  L     +      A+  
Sbjct: 15  MYHENPME-EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA 73

Query: 574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
           L     +D +    +    +          A+  L + L   P
Sbjct: 74  LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 17/88 (19%), Positives = 28/88 (31%)

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG 611
           E           LAN  +A    + V   +    +A+   GL      +   AI  L+  
Sbjct: 18  ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREAV 639
             +DP +I      A  +        A+
Sbjct: 78  RMLDPKDIAVHAALAVSHTNEHNANAAL 105

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           +  L N ++A    +++  +  E ++   +     ++ E     I   + A  LDP  + 
Sbjct: 27  MLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 86

Query: 105 AYILKGCAFSALGRKEEALSVWEK 128
            +     + +       AL+    
Sbjct: 87  VHAALAVSHTNEHNANAALASLRA 110

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 77.4 bits (192), Expect = 3e-17
 Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 34/151 (22%)

Query: 414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS 473
             EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+   
Sbjct: 8   SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY 533
           KALE +PN+A+                                  A+  LG A    G+Y
Sbjct: 68  KALELDPNNAE----------------------------------AWYNLGNAYYKQGDY 93

Query: 534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
            +A E + KA++LD N  EA  +L    Q  
Sbjct: 94  DEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 76.3 bits (189), Expect = 6e-17
 Identities = 42/150 (28%), Positives = 62/150 (41%), Gaps = 34/150 (22%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
                    A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 95

Query: 570 ALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
           A+E  Q+ L +D   ++A    G      G
Sbjct: 96  AIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 76.3 bits (189), Expect = 8e-17
 Identities = 34/115 (29%), Positives = 58/115 (50%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
           A+  LG A    G+Y +A E + KA++LD N  EAW +L   Y    + ++A+E  Q+ L
Sbjct: 11  AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
            +D   ++A++  G   +  G + +AI+     L +DP+N E      +     G
Sbjct: 71  ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 35/106 (33%), Positives = 52/106 (49%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
           +  EAW   G A    G+  EAI+   KALE +PN+A+     G  
Sbjct: 75  NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 27/91 (29%), Positives = 48/91 (52%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
              L +DP+N E  Y   + Y+  G+Y EA+
Sbjct: 67  QKALELDPNNAEAWYNLGNAYYKQGDYDEAI 97

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 53.6 bits (130), Expect = 5e-09
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 49  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 109 NNAEAKQNLGNAKQKQG 125

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 54  KAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAF 113
           KA+ + D   A+++      N    Y +   +   I    KAL+LDP   +A+   G A+
Sbjct: 34  KALEL-DPNNAEAW-----YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87

Query: 114 SALGRKEEALSVWEK 128
              G  +EA+  ++K
Sbjct: 88  YKQGDYDEAIEYYQK 102

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 38.9 bits (92), Expect = 7e-04
 Identities = 16/55 (29%), Positives = 26/55 (47%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEK 128
           N    Y +   +   I    KAL+LDP   +A+   G A+   G  +EA+  ++K
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 20/139 (14%), Positives = 38/139 (27%), Gaps = 27/139 (19%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
            ++A    + G   +K KDF  A       ++LD  N + Y           ++ +  + 
Sbjct: 5   TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG 599
             KA+++ R     +                           K  +KA    G       
Sbjct: 65  CEKAVEVGRETRADY---------------------------KLIAKAMSRAGNAFQKQN 97

Query: 600 QHKKAIKDLSSGLGIDPSN 618
               A++     L      
Sbjct: 98  DLSLAVQWFHRSLSEFRDP 116

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 70.4 bits (173), Expect = 8e-15
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +   A  A K  G A     +  +A     KA+E +P++    + +  V F+ K F   V
Sbjct: 3   AMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECV 62

Query: 504 EDLSACVKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           +     V++ +E ++       A +  G A     +   A +   +++   R+
Sbjct: 63  QFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 7/102 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +  +  A   +D+ ++ DP        +      +++    +    +A++   
Sbjct: 14  LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73

Query: 447 SA-------GEAWKRRGQARAALGESVEAIQDLSKALEFEPN 481
                     +A  R G A     +   A+Q   ++L    +
Sbjct: 74  ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSV 125
            N+A  Y + +     ++ C+KA+++             A    G AF        A+  
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 126 WEKGYEHALHQSADLKQFL 144
           + +       +  +L + +
Sbjct: 106 FHRSLS--EFRDPELVKKV 122

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 7/79 (8%), Positives = 24/79 (30%), Gaps = 7/79 (8%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-------E 620
           EKA     + + +D      Y+ +  +     +  + ++     + +            +
Sbjct: 25  EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84

Query: 621 CLYLRASCYHAIGEYREAV 639
            +    + +    +   AV
Sbjct: 85  AMSRAGNAFQKQNDLSLAV 103

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 41.5 bits (98), Expect = 9e-05
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 12/108 (11%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
              K+  N A + K F    +   K+I +D     F  ++      E K+A  +   ++ 
Sbjct: 9   IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68

Query: 408 LKEDP-------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
           ++          +  +A+   G A   Q +L  A+  F  ++      
Sbjct: 69  VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 38/275 (13%), Positives = 88/275 (32%), Gaps = 39/275 (14%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI 442
               RG+ + ++ +Y  AI  + +  K                         +SD  E  
Sbjct: 103 SLFFRGMYEFDQKEYVEAIGYYREAEK---------------------ELPFVSDDIEKA 141

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           + +    EA+    Q   ++   ++A+        +   +   L         FK ++ A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201

Query: 503 VEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----DRNFL 551
           +  L A ++L  + +       +   +  +    G+ + A E   KA ++          
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSS 610
           +    L+        ++KA + +++ L      S K Y    L L  + +     + +  
Sbjct: 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321

Query: 611 GL------GIDPSNIECLYLRASCYHAIGEYREAV 639
            L       +      C    A+ + +   + +A 
Sbjct: 322 LLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAA 356

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 69.8 bits (171), Expect = 6e-13
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 25/207 (12%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE------DLSACV 510
             R  + E +E I+   K L         L  RG+  F  K++  A+            V
Sbjct: 76  GNRPTVTELLETIETPQKKLT-GLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV 134

Query: 511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGHLTQFYQD 563
             D E    +  +  A   + +   +    L+A+ + +N         ++   +   Y D
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI--- 614
             + +KAL  L+  L +          + +           G  + A++       +   
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254

Query: 615 --DPSNIECLYLRASCYHAIGEYREAV 639
                  + L+  +      G+ ++A 
Sbjct: 255 KVPDLLPKVLFGLSWTLCKAGQTQKAF 281

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 59.4 bits (144), Expect = 1e-09
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 24/215 (11%)

Query: 397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG 456
              A+ I+           ++L          +  + A+     A++           R 
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN---DRF 220

Query: 457 QARA---------ALGESVEAIQDLSKALE-----FEPNSADILHERGIVNFKFKDFNAA 502
            A +           G+   A++   KA +            +L        K      A
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280

Query: 503 VE----DLSACVKL-DKENKSAYTYLGLALSSIGEYKKAEEA--HLKAIQLDRNFLEAWG 555
            +     L        K  K  + +L        + +K  +   + +   L         
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340

Query: 556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
                ++   + E+A    ++VL   +   K   L
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECL 375

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 19/184 (10%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
                +   Y  A+   +  L+       D     +L+    +     + + A+  F +A
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248

Query: 442 IQSNPSAGEAWKRR-----GQARAALGESVEAIQDLSKALE--------FEPNSADILHE 488
            + +         +            G++ +A Q + + L+        F       L  
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQA 308

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
                   +  +  +        L    ++          S   +++A   + K ++   
Sbjct: 309 VYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQE 367

Query: 549 NFLE 552
           + L+
Sbjct: 368 DILK 371

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 76.0 bits (187), Expect = 2e-16
 Identities = 19/122 (15%), Positives = 37/122 (30%)

Query: 457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN 516
               A+ +++ +   L        +  D ++      +       A          D  N
Sbjct: 10  SISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN 69

Query: 517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
                 L        ++++A + +  A  L +N      H  Q    L    KA EC + 
Sbjct: 70  VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL 129

Query: 577 VL 578
           V+
Sbjct: 130 VI 131

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.7 bits (176), Expect = 5e-15
 Identities = 13/98 (13%), Positives = 31/98 (31%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S      N+G+   A   F  +   D    + ++G       + + + A   +  A    
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
            +        GQ +  L   ++A +     ++   +  
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 71.7 bits (176), Expect = 6e-15
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 2/135 (1%)

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
              D   +   L     +  +             + G  ++AE         D   ++  
Sbjct: 14  AVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYI 73

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
             L   YQ     ++A +       + K         G     L    KA +     +  
Sbjct: 74  MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133

Query: 615 DPSNIECLYLRASCY 629
                E L ++A  Y
Sbjct: 134 SND--EKLKIKAQSY 146

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 69.1 bits (169), Expect = 4e-14
 Identities = 12/112 (10%), Positives = 26/112 (23%)

Query: 406 QILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES 465
            I        + +         +  +E A   F      +    +             + 
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
            +A    + A     N    +   G    + K    A E     ++   + K
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 67.9 bits (166), Expect = 1e-13
 Identities = 14/110 (12%), Positives = 30/110 (27%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF 499
           +         +            G   EA         ++  + D +     +    + F
Sbjct: 27  DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQF 86

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
             A +  +    L K + +   + G     +    KA+E     IQ   +
Sbjct: 87  QQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 14/125 (11%), Positives = 38/125 (30%), Gaps = 7/125 (5%)

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECL 574
           EN+S  T +  A++S    K           +  + ++        + +    E+A    
Sbjct: 7   ENESISTAVIDAINSGATLKDI-------NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFF 59

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
           + +   D            +     Q ++A    +    +  ++   ++    C   +  
Sbjct: 60  RFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA 119

Query: 635 YREAV 639
             +A 
Sbjct: 120 PLKAK 124

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 16/105 (15%), Positives = 28/105 (26%), Gaps = 1/105 (0%)

Query: 46  LCSLRNWSKAIRILDSLLA-QSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
             +     +A      L     Y +  I   A  Y   E  +        A  L      
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL 149
                G     L    +A   +E   +H+  +   +K    L+ +
Sbjct: 106 PVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 2/79 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +VD+ +        + ++  A  ++             +   G  +   +    A   F 
Sbjct: 69  NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128

Query: 440 EAIQSNPSAGEAWKRRGQA 458
             IQ +    E  K + Q+
Sbjct: 129 LVIQHSN--DEKLKIKAQS 145

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 75.4 bits (186), Expect = 2e-16
 Identities = 21/102 (20%), Positives = 43/102 (42%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G     +G Y  A+  + + +K +P   +    R        E + A+ D  E IQ  P
Sbjct: 22  KGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP 81

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
           +  + + R+  A  A+ +  +A+    KAL+ + +  +    
Sbjct: 82  TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 29/118 (24%), Positives = 52/118 (44%)

Query: 436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK 495
                    NP      K +G      G+  +A++  ++A++  P  A +   R     K
Sbjct: 3   HHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
             +F  A++D   C++L+      YT    AL ++ +Y KA + + KA+ LD +  EA
Sbjct: 63  LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 34/159 (21%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
                  P+ A ++  +G   F+  D+  A++  +  +K + ++   Y+      + + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           ++ A +   + IQL+                                    F K Y  + 
Sbjct: 66  FQLALKDCEECIQLEPT----------------------------------FIKGYTRKA 91

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA 631
             L  +  + KA+      L +D S  E       C  A
Sbjct: 92  AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++AI+  +   A+ Y      NRA CY++L   +  ++DC++ +QL+PT ++ Y  K  A
Sbjct: 40  TEAIK-RNPKDAKLY-----SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93

Query: 113 FSALGRKEEALSVWEKGYEH 132
             A+    +A+ V++K  + 
Sbjct: 94  LEAMKDYTKAMDVYQKALDL 113

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 64.9 bits (159), Expect = 7e-13
 Identities = 23/119 (19%), Positives = 43/119 (36%)

Query: 405 DQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE 464
                 +P     +  +G     + +   A+  +TEAI+ NP   + +  R      L E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
              A++D  + ++ EP        +       KD+  A++     + LD   K A    
Sbjct: 66  FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGY 124

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 15/114 (13%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
            M+K   NE  +   +       +++I  +        +R        ++  A+   ++ 
Sbjct: 17  LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEEC 76

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA 461
           ++ +P + +    +  A    ++   A+  + +A+  + S  EA     +   A
Sbjct: 77  IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 44.9 bits (107), Expect = 7e-06
 Identities = 14/72 (19%), Positives = 36/72 (50%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A++   + +  + + +K Y  R      L + + A+KD    + ++P+ I+    +A+
Sbjct: 33  PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92

Query: 628 CYHAIGEYREAV 639
              A+ +Y +A+
Sbjct: 93  ALEAMKDYTKAM 104

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 11/65 (16%), Positives = 29/65 (44%)

Query: 575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
               +++   +     +G      G + +A+K  +  +  +P + +    RA+CY  + E
Sbjct: 6   HHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLE 65

Query: 635 YREAV 639
           ++ A+
Sbjct: 66  FQLAL 70

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 46/315 (14%), Positives = 92/315 (29%), Gaps = 69/315 (21%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G    N G   + ++ F   ++      E L          G A  +  +   A+     
Sbjct: 55  GERLCNAGDCRAGVAFFQAAIQ---AGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKH 111

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    S  +   R G+A++          +G   EA     + L          +    
Sbjct: 112 DLTLAKSMND---RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY----------------------- 522
           L+  G V                   + +    A  +                       
Sbjct: 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGN 228

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G+++ A E H + +++ R F +      A  +L   +  L   E A E  ++
Sbjct: 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288

Query: 577 VLYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L +           ++ +  G     L +   AI+       ++  LG         + 
Sbjct: 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWS 348

Query: 625 RASCYHAIGEYREAV 639
             + + AIG +  A+
Sbjct: 349 LGNAHSAIGGHERAL 363

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 74.6 bits (184), Expect = 2e-14
 Identities = 35/274 (12%), Positives = 75/274 (27%), Gaps = 51/274 (18%)

Query: 417 ALIGRGTARAFQRELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQ 470
           +      +           +      Q         S        G+     G+    + 
Sbjct: 10  SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69

Query: 471 DLSKALEFE----PNSADILHERGIVNFKFKDFNAAVE----DLSACVKLDKENKSAYTY 522
               A++         + I  + G   F   D+N A++    DL+    ++     A + 
Sbjct: 70  FFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129

Query: 523 --LGLALSSIGEYKKAEEAHLKAIQLDR-----------------------NFLEAWGHL 557
             LG  L  +G + +A     + + L R                         L      
Sbjct: 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPG 189

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK----- 606
                      +A+E  Q+ L + +         +A    G   + LG  + AI+     
Sbjct: 190 KFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249

Query: 607 -DLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
             ++   G   +         + +  +G++ +A 
Sbjct: 250 LRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 29/211 (13%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +GK+    +              A+        +Q  L+         +    +
Sbjct: 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAV------EFYQENLKLM-----RDLGDRGA 221

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKDFNA 501
            G A    G     LG+   AI+   + L                   G  +     F  
Sbjct: 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281

Query: 502 AVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----- 550
           A E     + L  E         +   LG   + + E+  A E H + + + +       
Sbjct: 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341

Query: 551 -LEAWGHLTQFYQDLANSEKALECLQQVLYI 580
              A   L   +  +   E+AL+  +Q L +
Sbjct: 342 EARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 75.5 bits (186), Expect = 4e-16
 Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 2/121 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           S G A +   +Y+ AI ++ Q L   P  P  L  R  A +   + E A  D   A   +
Sbjct: 16  SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD 75

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI--VNFKFKDFNAAV 503
           P   +AW R G AR  + +   A +   K +E E N      +RG+     K ++ N   
Sbjct: 76  PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGA 135

Query: 504 E 504
           E
Sbjct: 136 E 136

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 70.9 bits (174), Expect = 1e-14
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           +     +  K  G A  A  E  +AI   ++AL   P +   L  R            A 
Sbjct: 6   APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAA 65

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           ED      +D +   A++ LGLA   + +YK A+EA+ K I+ + N            + 
Sbjct: 66  EDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD-----AMKRG 120

Query: 564 LANSEKALE 572
           L  +++ +E
Sbjct: 121 LETTKRKIE 129

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 27/142 (19%), Positives = 58/142 (40%), Gaps = 5/142 (3%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
               +D L   G      K+++ A++  +  + +   N    +    A S+ G+++KA E
Sbjct: 7   PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAE 66

Query: 539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL 598
               A  +D  + +AW  L     D+A+ + A E  ++ +  +         R     GL
Sbjct: 67  DAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR-----GL 121

Query: 599 GQHKKAIKDLSSGLGIDPSNIE 620
              K+ I++ + G      +++
Sbjct: 122 ETTKRKIEEANRGAEPPADDVD 143

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           ++A+  +              NRA  YS    H+    D + A  +DP   +A+   G A
Sbjct: 35  TQALS-IAPANPIYL-----SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88

Query: 113 FSALGRKEEALSVWEKGYEHA-LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSS 171
              +   + A   +EKG E      S  +K+ LE  +         +     DV ++  +
Sbjct: 89  RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGA 148

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 2/114 (1%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           ++E   AI  +T+A+   P+       R  A +A G+  +A +D   A   +P  +    
Sbjct: 24  RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL--ALSSIGEYKKAEEA 539
             G+  F   D+  A E     ++ +    S     GL      I E  +  E 
Sbjct: 84  RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANRGAEP 137

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 25/72 (34%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            KA++   Q L I          R       GQH+KA +D      +DP   +       
Sbjct: 28  SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87

Query: 628 CYHAIGEYREAV 639
               + +Y+ A 
Sbjct: 88  ARFDMADYKGAK 99

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 78.4 bits (194), Expect = 7e-16
 Identities = 49/315 (15%), Positives = 97/315 (30%), Gaps = 66/315 (20%)

Query: 388 GIAQVNEGKYASAISIFDQ---ILKED-PMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
           G      G   + +S F+    +  ED           G A  +  +   A+      + 
Sbjct: 12  GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71

Query: 444 SNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHE 488
              + G+   + G+A+A          LG   EAI    + L+       +   A  L+ 
Sbjct: 72  LARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYN 128

Query: 489 RGIVNFKFKDFNAAVEDLSACVKLDKENK--------------------------SAYTY 522
            G V                    +                               A+  
Sbjct: 129 LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGN 188

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQ 576
           LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E  ++
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248

Query: 577 VLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYL 624
            L + ++       +++ +  G     L  ++KAI        ++  L          + 
Sbjct: 249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWS 308

Query: 625 RASCYHAIGEYREAV 639
             + Y A+G + +A+
Sbjct: 309 LGNAYTALGNHDQAM 323

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 66.1 bits (162), Expect = 8e-12
 Identities = 42/200 (21%), Positives = 71/200 (35%), Gaps = 42/200 (21%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAE 537
           S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y KA 
Sbjct: 4   SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63

Query: 538 EAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------S 585
           E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +        +
Sbjct: 64  EYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123

Query: 586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC-----LYLRA-------------- 626
           +A +  G + H  G+         +G   +           LY                 
Sbjct: 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183

Query: 627 -------SCYHAIGEYREAV 639
                  + ++ +G +R+AV
Sbjct: 184 RAFGNLGNTHYLLGNFRDAV 203

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 39/247 (15%), Positives = 72/247 (29%), Gaps = 50/247 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 90  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTG 149

Query: 422 GTARAFQRELEAAISDFTEA------IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
                 +  L+AA+  + E       +    + G A+   G     LG   +A+    + 
Sbjct: 150 EFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209

Query: 476 LEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
           L        +          G       +F  A E     + L ++ K       +   L
Sbjct: 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSL 269

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALECLQQV 577
           G   + + +Y+KA + HLK + + +          A   L   Y  L N ++A+   ++ 
Sbjct: 270 GNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329

Query: 578 LYIDKRF 584
           L I +  
Sbjct: 330 LEISREV 336

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 28/190 (14%), Positives = 60/190 (31%), Gaps = 30/190 (15%)

Query: 386 SRGIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFT 439
           +    +       +A+ ++++ L       +      A    G           A+    
Sbjct: 148 TGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 207

Query: 440 EAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSAD 484
           + +      G+   +  + RA          LGE   A +   K L            A 
Sbjct: 208 QRLLIAKEFGD---KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 264

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEE 538
             +  G      +D+  A++     + + +E K       A   LG A +++G + +A  
Sbjct: 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324

Query: 539 AHLKAIQLDR 548
              K +++ R
Sbjct: 325 FAEKHLEISR 334

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 73.1 bits (180), Expect = 8e-16
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA   ++L      I DC+KA++ DP  ++AYI K  A  A+     AL   +     
Sbjct: 42  SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 101

Query: 133 ALHQSADLKQFLELEELLTAAKQDR 157
              +  +     E+++L   A Q R
Sbjct: 102 DA-EVNNGSSAREIDQLYYKASQQR 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 24/111 (21%), Positives = 46/111 (41%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  + +++K  P        R  A A       AI+D  +AI+ +P
Sbjct: 10  EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
           +   A+ R+  A+ A+ E   A++ L  A   +    +    R I    +K
Sbjct: 70  NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 120

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 20/104 (19%), Positives = 35/104 (33%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  +  G+      +   A++  ++ ++  P  A     R     K   F  A+ D +  
Sbjct: 5   EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA 553
           ++ D     AY     A  ++ EY  A E    A   D      
Sbjct: 65  IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
            A+     G   F   D+  AV+  +  +K   E+   Y+    AL+ +  + +A     
Sbjct: 3   KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL 593
           KAI+ D NF+ A+         +     ALE L      D   +     R +
Sbjct: 63  KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREI 114

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 4/108 (3%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  +TE I+  P     +  R  A A L    EAI D +KA+E +PN       +  
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
                K++ +A+E L A    D E  +  +   +       Y KA + 
Sbjct: 81  AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQ----LYYKASQQ 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 15/72 (20%), Positives = 31/72 (43%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A++   +++      ++ Y  R   L  L    +AI D +  +  DP+ +     +A+
Sbjct: 21  PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80

Query: 628 CYHAIGEYREAV 639
              A+ EY  A+
Sbjct: 81  AQIAVKEYASAL 92

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 76.9 bits (189), Expect = 1e-15
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 28  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R  + E    +  S L
Sbjct: 82  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKRWNSIEERRIHQESEL 139

Query: 173 TVSESGLNANDKMSETSENHNKSD 196
               + L A ++  E  E     +
Sbjct: 140 HSYLTRLIAAERERELEECQRNHE 163

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 69.2 bits (169), Expect = 5e-13
 Identities = 27/189 (14%), Positives = 60/189 (31%), Gaps = 2/189 (1%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G       KY  A + + + +  +P+       R       ++ E A++D   A++ +
Sbjct: 9   EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVED 505
             + +A    GQ +  +    EAI +L +A            +      +          
Sbjct: 69  GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSI 128

Query: 506 LSACVKLDKENKSAYTYLGLA--LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
               +  + E  S  T L  A     + E ++  E H     +            ++  D
Sbjct: 129 EERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMAD 188

Query: 564 LANSEKALE 572
           +      ++
Sbjct: 189 MDELFSQVD 197

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 59.9 bits (145), Expect = 5e-10
 Identities = 21/101 (20%), Positives = 43/101 (42%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL 541
           SA  L E+G   F  + +  A       +  +      YT   L    + + ++A     
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62

Query: 542 KAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           +A++LD   ++A   L Q   ++ + ++A+  LQ+   + K
Sbjct: 63  RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 21  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80

Query: 628 CYHAIGEYREAV 639
           C   +  Y EA+
Sbjct: 81  CQLEMESYDEAI 92

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 74.1 bits (182), Expect = 1e-15
 Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 3/137 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           +         A Q+  EA +    + I++NP   E W   G+      +   ++    +A
Sbjct: 11  QRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQA 70

Query: 476 LEFEPNSADILHERGIVNF---KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           L+    +A++      V +              +   + LD    +A   L         
Sbjct: 71  LQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130

Query: 533 YKKAEEAHLKAIQLDRN 549
           Y +A E   K + L+  
Sbjct: 131 YAQAIELWQKVMDLNSP 147

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 69.1 bits (169), Expect = 9e-14
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 3/128 (2%)

Query: 496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG 555
            ++  A ++ L   ++ + +N   +  LG       +Y  +  A+ +A+QL     E + 
Sbjct: 23  QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYA 82

Query: 556 HLTQFY---QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
            L            + +    + + L +D     A  L          + +AI+     +
Sbjct: 83  ALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVM 142

Query: 613 GIDPSNIE 620
            ++   I 
Sbjct: 143 DLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 68.4 bits (167), Expect = 1e-13
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 3/137 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG 449
              ++    + +      ++ +P   E     G    +Q +   ++  + +A+Q      
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 450 EAWKRRGQARAALGE---SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
           E +               + +    + KAL  + N    L       F   ++  A+E  
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW 138

Query: 507 SACVKLDKENKSAYTYL 523
              + L+    +    +
Sbjct: 139 QKVMDLNSPRINRTQLV 155

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 66.0 bits (161), Expect = 9e-13
 Identities = 26/142 (18%), Positives = 51/142 (35%), Gaps = 3/142 (2%)

Query: 443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA 502
           Q+  +  +  +      A+       +Q L   +   P +++     G       D++ +
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL---KAIQLDRNFLEAWGHLTQ 559
           +      ++L  EN   Y  L   L          +      KA+ LD N + A   L  
Sbjct: 64  LLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123

Query: 560 FYQDLANSEKALECLQQVLYID 581
                AN  +A+E  Q+V+ ++
Sbjct: 124 DAFMQANYAQAIELWQKVMDLN 145

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 3/117 (2%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS 585
             +S    +   +A    I+ +    E W  L ++Y    +   +L   +Q L +    +
Sbjct: 19  QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA 78

Query: 586 KAYHLRGLLLHGLGQHK---KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           + Y     +L+         +    +   L +D + I  L L AS       Y +A+
Sbjct: 79  ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 54.5 bits (131), Expect = 8e-09
 Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF---QRELEAAISDFTEAIQS 444
           G   + +  Y++++  + Q L+      E      T   +   Q       +   +A+  
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           + +   A               +AI+   K ++      +
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 389 IAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA 448
             Q ++   A   ++ D+ L  D     AL+   +    Q     AI  + + +  N   
Sbjct: 89  YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP- 147

Query: 449 GEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                     R  L ES+   + L +  + E
Sbjct: 148 -------RINRTQLVESINMAKLLQRRSDLE 171

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 8/105 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            +AI   + L+A  Y      NRA CY +++  +  + DC +AL+LD   ++A+   G  
Sbjct: 33  GRAIT-RNPLVAVYY-----TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDR 157
              +   +EA++  ++ Y  A  Q  +     ++   L  AK+ R
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQRLNFGD--DIPSALRIAKKKR 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 18/102 (17%), Positives = 39/102 (38%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 74

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            + +A    GQ +  +    EAI +L +A            +
Sbjct: 75  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 20/109 (18%), Positives = 39/109 (35%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
                  + +  K +G       +  EA     +A+   P  A     R +   K +   
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            A+ D    ++LD ++  A+ +LG     +  Y +A     +A  L + 
Sbjct: 61  QALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 62.3 bits (152), Expect = 7e-12
 Identities = 21/111 (18%), Positives = 42/111 (37%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            R+   A + +  AI  NP     +  R      + +  +A+ D  +ALE +  S     
Sbjct: 22  GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 81

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
             G    + + ++ A+ +L     L KE +  +     +   I + K+   
Sbjct: 82  FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 34/144 (23%)

Query: 475 ALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK 534
               +  SA  L E+G   F  + +  A       +  +      YT   L    + + +
Sbjct: 1   GPHMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPE 60

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +A     +A++LD                                      KA+   G  
Sbjct: 61  QALADCRRALELDGQ----------------------------------SVKAHFFLGQC 86

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSN 618
              +  + +AI +L     +    
Sbjct: 87  QLEMESYDEAIANLQRAYSLAKEQ 110

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 30/72 (41%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A  C  + +  +   +  Y  R L    + Q ++A+ D    L +D  +++  +    
Sbjct: 26  PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85

Query: 628 CYHAIGEYREAV 639
           C   +  Y EA+
Sbjct: 86  CQLEMESYDEAI 97

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 29/136 (21%), Positives = 46/136 (33%), Gaps = 27/136 (19%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A    E G   +K KDF+ A++      +LD  N +  T         G+Y K  E   K
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI++ R   E +                           ++ +KAY   G       ++K
Sbjct: 64  AIEVGRENREDY---------------------------RQIAKAYARIGNSYFKEEKYK 96

Query: 603 KAIKDLSSGLGIDPSN 618
            AI   +  L    + 
Sbjct: 97  DAIHFYNKSLAEHRTP 112

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 68.1 bits (167), Expect = 5e-14
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKS-------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+        AY  +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 7/104 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G     +  + +A+  +D+  + DP     +  +      + +         +AI+   
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 447 SAGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
              E       A+ R G +     +  +AI   +K+L       
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD 113

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYILKGCAFSALGRKEEALSV 125
            N+A  Y +   +      C+KA+++     +       AY   G ++    + ++A+  
Sbjct: 42  TNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF 101

Query: 126 WEKGYEHALHQSAD-LKQFLELEELLTAAKQDR 157
           + K      H++ D LK+  + E++L   +Q+R
Sbjct: 102 YNKSLA--EHRTPDVLKKCQQAEKIL--KEQER 130

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 10/79 (12%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE------- 620
           + AL+   +   +D         +  +    G + K  +     + +   N E       
Sbjct: 21  DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80

Query: 621 CLYLRASCYHAIGEYREAV 639
                 + Y    +Y++A+
Sbjct: 81  AYARIGNSYFKEEKYKDAI 99

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 71.8 bits (177), Expect = 2e-15
 Identities = 21/100 (21%), Positives = 41/100 (41%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
            +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   
Sbjct: 9   EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK 68

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           P  G+ + R+  A   L    EA +   + L+ E N+  +
Sbjct: 69  PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI+ LD      Y      NR+  Y++   ++    D  K + L P   + Y  K  A
Sbjct: 28  SEAIK-LDPHNHVLY-----SNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAA 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
              L R EEA   +E+G +H
Sbjct: 82  LEFLNRFEEAKRTYEEGLKH 101

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 65.3 bits (160), Expect = 4e-13
 Identities = 20/98 (20%), Positives = 45/98 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 5   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
           V L  +    Y+    AL  +  +++A+  + + ++ +
Sbjct: 65  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE 102

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 64.5 bits (158), Expect = 7e-13
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
            + L E+G       + + A++  S  +KLD  N   Y+    A +  G+Y+KA E   K
Sbjct: 4   VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
            + L  +                                  + K Y  +   L  L + +
Sbjct: 64  TVDLKPD----------------------------------WGKGYSRKAAALEFLNRFE 89

Query: 603 KAIKDLSSGLGIDPSNIEC 621
           +A +    GL  + +N + 
Sbjct: 90  EAKRTYEEGLKHEANNPQL 108

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 1/99 (1%)

Query: 426 AFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
           A     ++ A+  ++EAI+ +P     +  R  A A  G+  +A +D  K ++ +P+   
Sbjct: 14  ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK 73

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL 523
               +         F  A       +K +  N      L
Sbjct: 74  GYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 14/72 (19%), Positives = 29/72 (40%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           + AL+C  + + +D      Y  R       G ++KA +D    + + P   +    +A+
Sbjct: 21  DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80

Query: 628 CYHAIGEYREAV 639
               +  + EA 
Sbjct: 81  ALEFLNRFEEAK 92

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 71.6 bits (176), Expect = 2e-15
 Identities = 16/86 (18%), Positives = 28/86 (32%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR 459
                + +L +           G   A   + +AA+     A+  +P+   AWK  G+  
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 460 AALGESVEAIQDLSKALEFEPNSADI 485
              G+   A Q     L    +  D 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQ 89

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
              + L   L    ++  +    G    + + F+AA+  L A +  D     A+ +LG  
Sbjct: 3   AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDL 564
           L   G+   A +A    +   ++    +    L  F + L
Sbjct: 63  LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
            A  E L A +    +N      LG   +   ++  A      A+  D  +  AW  L +
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 560 FYQDLANSEKALECLQQVLYIDKR 583
             Q   +   A +  +  L   + 
Sbjct: 62  TLQGQGDRAGARQAWESGLAAAQS 85

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 19/83 (22%), Positives = 29/83 (34%)

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
             E     +    + +     L + Y +    + AL  L+  L  D  +S A+   G  L
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 596 HGLGQHKKAIKDLSSGLGIDPSN 618
            G G    A +   SGL    S 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSR 86

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
                Y++ E     +     AL  DPT   A+   G      G +  A   WE G   A
Sbjct: 24  TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83

Query: 134 LHQSADLKQFLELEELLTAAKQDRSV 159
                D +   EL+  L    ++ ++
Sbjct: 84  -QSRGDQQVVKELQVFLRRLAREDAL 108

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 15/93 (16%), Positives = 27/93 (29%), Gaps = 2/93 (2%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
           ++  R + G       ++ +A+      L  DP Y  A    G     Q +   A   + 
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 440 EAIQSNPSAG--EAWKRRGQARAALGESVEAIQ 470
             + +  S G  +  K        L        
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 12/72 (16%), Positives = 19/72 (26%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           +   E L+ +L             G       Q   A+  L + L  DP+          
Sbjct: 2   QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61

Query: 628 CYHAIGEYREAV 639
                G+   A 
Sbjct: 62  TLQGQGDRAGAR 73

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 55/318 (17%), Positives = 103/318 (32%), Gaps = 72/318 (22%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTE 440
           G      G   + +S F+  ++   +  E L          G A  +  +   A+     
Sbjct: 16  GERLCKSGDCRAGVSFFEAAVQ---VGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72

Query: 441 AIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDLSKALEF------EPNSADI 485
            +    + G+   + G+A+A          LG   EAI    + L+       +   A  
Sbjct: 73  DLTLARTIGD---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 486 LHERGIV--------------------NFKFKDFNAAVEDLSACVKLDKENK------SA 519
           L+  G V                            AAV+     + L            A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALEC 573
           +  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A E 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 574 LQQVLYIDKRFS------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI-EC 621
            ++ L + ++        ++ +  G     L  ++KAI      L I     D       
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRA 309

Query: 622 LYLRASCYHAIGEYREAV 639
            +   + Y A+G + +A+
Sbjct: 310 CWSLGNAYTALGNHDQAM 327

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 53/314 (16%), Positives = 93/314 (29%), Gaps = 63/314 (20%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
           G A      YA A+      L       +     +A    G         + AI      
Sbjct: 54  GNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113

Query: 442 IQSNPSA-------------GEAWKRRGQARAALG------ESVEAIQDLSKALEF---- 478
           +  +                G  +  +G++    G         E    L  A++F    
Sbjct: 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173

Query: 479 ---------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYL 523
                               G  ++   +F  AV      + + KE         AY+ L
Sbjct: 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL 233

Query: 524 GLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQV 577
           G A   +GE++ A E + K + L R   +      +   L   Y  L + EKA++   + 
Sbjct: 234 GNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 578 LYIDKRFS------KAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIECLYLR 625
           L I +  +      +A    G     LG H +A+       ++S  +G     +      
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNL 353

Query: 626 ASCYHAIGE-YREA 638
           +     +G  Y   
Sbjct: 354 SDLQMVLGLSYSTN 367

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 71.2 bits (175), Expect = 3e-13
 Identities = 46/278 (16%), Positives = 87/278 (31%), Gaps = 54/278 (19%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRRGQARAALGESVEAIQD 471
             L   G       +  A +S F  A+Q       +    + + G A   L +  +A++ 
Sbjct: 10  LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEY 69

Query: 472 LSKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SA 519
               L        +   A      G       +F+ A+      + + +E         A
Sbjct: 70  HHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129

Query: 520 YTYLGLALSSIGE--------------------YKKAEEAHLKAIQLDRNFLE------A 553
              LG    + G+                     + A + + + + L     +      A
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189

Query: 554 WGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK- 606
           +G+L   +  L N   A+   +Q L I K F       +AY   G     LG+ + A + 
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249

Query: 607 -----DLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                 L+  L       +  Y   + Y  + +Y +A+
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 44/203 (21%)

Query: 480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKK 535
             S   L   G    K  D  A V    A V++  E+     + Y+ LG A   + +Y K
Sbjct: 6   EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65

Query: 536 AEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF----- 584
           A E H   + L R   +      A G+L    + L N ++A+ C Q+ L I +       
Sbjct: 66  ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG 125

Query: 585 -SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRA----------- 626
            ++A +  G + H  G+          G   +         ++  Y              
Sbjct: 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF-YEENLSLVTALGDRA 184

Query: 627 ----------SCYHAIGEYREAV 639
                     + ++ +G +R+AV
Sbjct: 185 AQGRAFGNLGNTHYLLGNFRDAV 207

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 46/293 (15%), Positives = 83/293 (28%), Gaps = 69/293 (23%)

Query: 388 GIAQVNEGKYASAISIFDQILK--------------------------EDPMYPEALIGR 421
           G      G +  AI    + L                           +    P      
Sbjct: 94  GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVG 153

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
                 +  L+AA+  + E +    + G+   R  Q RA          LG   +A+   
Sbjct: 154 EFPEEVRDALQAAVDFYEENLSLVTALGD---RAAQGRAFGNLGNTHYLLGNFRDAVIAH 210

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            + L        +          G       +F  A E     + L ++ K       + 
Sbjct: 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 270

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECL 574
             LG   + + +Y+KA + HLK + + +   +      A   L   Y  L N ++A+   
Sbjct: 271 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330

Query: 575 QQVLYIDKRF-------------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
           ++ L I +               S    + GL             ++ S L  
Sbjct: 331 EKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNG 383

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 5/120 (4%)

Query: 374 SKSKSISVDFRL-----SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
           S ++   ++  L     ++G     +G Y +A+  +++ +K DP        R       
Sbjct: 1   SNARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKL 60

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            E + A+ D    I+ +    + + R+     A+ E  +A +    AL+ +P++ +    
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 31/149 (20%), Positives = 50/149 (33%), Gaps = 34/149 (22%)

Query: 473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE 532
           ++     P  A     +G   FK  D+  A+   +  VK D EN   Y+     L+ + E
Sbjct: 3   ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
           +++A +     I+LD                                    F K Y  + 
Sbjct: 63  FQRALDDCDTCIRLDSK----------------------------------FIKGYIRKA 88

Query: 593 LLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
             L  + +  KA +     L +DPSN E 
Sbjct: 89  ACLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 16/60 (26%), Positives = 28/60 (46%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C ++L   +  + DCD  ++LD   ++ YI K     A+    +A   +E   + 
Sbjct: 51  SNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQV 110

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 13/88 (14%), Positives = 31/88 (35%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + EA++ +P     +  R      L E   A+ D    +  +         +  
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 492 VNFKFKDFNAAVEDLSACVKLDKENKSA 519
                ++++ A       +++D  N+ A
Sbjct: 90  CLVAMREWSKAQRAYEDALQVDPSNEEA 117

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 32/72 (44%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
             A+    + +  D   +  Y  R   L  L + ++A+ D  + + +D   I+    +A+
Sbjct: 30  PTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAA 89

Query: 628 CYHAIGEYREAV 639
           C  A+ E+ +A 
Sbjct: 90  CLVAMREWSKAQ 101

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 74.5 bits (183), Expect = 2e-14
 Identities = 36/274 (13%), Positives = 81/274 (29%), Gaps = 40/274 (14%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
             RG+ ++++ +Y SAI  F +                            + D  E  + 
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAES---------------------KLIFVKDRIEKAEF 145

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                E++    Q   ++  + +A +   +   +                  K +  A+ 
Sbjct: 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAIS 205

Query: 505 DLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR------NFLE 552
                  + +  K           +GL  +S  +Y+ A     +AI +        +  +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSG 611
           A+  +TQ +  L   +KA E   + +   ++     Y      L  L       + +   
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGF 325

Query: 612 L------GIDPSNIECLYLRASCYHAIGEYREAV 639
                   +     +     A  YH    +++A 
Sbjct: 326 FDFLESKMLYADLEDFAIDVAKYYHERKNFQKAS 359

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 69.9 bits (171), Expect = 6e-13
 Identities = 27/215 (12%), Positives = 69/215 (32%), Gaps = 31/215 (14%)

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHE------RGIVNFKFKDFNAAVE----- 504
                   E    + DL   ++ +      L E      RG+     +++ +A++     
Sbjct: 70  EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKA 129

Query: 505 -DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL-------EAWGH 556
                 VK   E    +  +  +   + +   + +   +A ++ +          +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189

Query: 557 LTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSS 610
               + DL   E A+   Q+   + +         +  +  GL  +   Q++ AI     
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249

Query: 611 GLGID------PSNIECLYLRASCYHAIGEYREAV 639
            + +       PS  +  +L    ++ +G+  +A 
Sbjct: 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.1 bits (99), Expect = 4e-04
 Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 21/185 (11%)

Query: 388 GIAQVNEGKYASAISIFDQILK------EDPMYPEALIGRGTARAFQRELEAAISDFTEA 441
               ++  +Y  AIS F +         +  +    L   G  +  Q + E AI  F  A
Sbjct: 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 442 IQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALE--------FEPNSADILH 487
           I         PS  +A+    Q    LG+  +A +  SK +            +  + L 
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLK 310

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
              +     +      + L +   L  + +     +         ++KA    LK  Q+ 
Sbjct: 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369

Query: 548 RNFLE 552
           +    
Sbjct: 370 QLIQG 374

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
           S+AI  L+   A  Y      NR+  Y + E + + + D  +A++LD   ++ Y  +  +
Sbjct: 37  SQAIE-LNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90

Query: 113 FSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSL 172
             ALG+   AL  +E   +   H      ++ E  +++     +R++  +    + + SL
Sbjct: 91  NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150

Query: 173 TVSESGLNANDK 184
            +    +     
Sbjct: 151 DIESMTIEDEYS 162

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 69.3 bits (170), Expect = 6e-14
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +         Y +AI  + Q ++ +P        R  A         A+ D T AI+ + 
Sbjct: 19  QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK 78

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVE 504
              + + RR  +  ALG+   A++D    ++ +P+  D   +    N   K   F  A+ 
Sbjct: 79  KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138

Query: 505 D 505
            
Sbjct: 139 G 139

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 5/122 (4%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 26  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 85

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
            R   N     F AA+ D    VK+   +K A                 ++A  +AI  D
Sbjct: 86  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-----NKIVKQKAFERAIAGD 140

Query: 548 RN 549
            +
Sbjct: 141 EH 142

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 18/100 (18%), Positives = 45/100 (45%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 14  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 73

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
           ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 74  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 34/152 (22%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           AI+LD+ +                                   K Y+ R      LG+ +
Sbjct: 73  AIELDKKY----------------------------------IKGYYRRAASNMALGKFR 98

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE 634
            A++D  + + + P + +       C   + +
Sbjct: 99  AALRDYETVVKVKPHDKDAKMKYQECNKIVKQ 130

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 17/72 (23%), Positives = 34/72 (47%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
           E A++   Q + ++   +  Y  R L       +  A+ D +  + +D   I+  Y RA+
Sbjct: 30  ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 89

Query: 628 CYHAIGEYREAV 639
              A+G++R A+
Sbjct: 90  SNMALGKFRAAL 101

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            NRA C+ +LE +     +  KA++ D   ++A   +  A   LGR ++A+   ++    
Sbjct: 69  RNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 65.1 bits (159), Expect = 9e-13
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 3/105 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIG---RGTARAFQRELEAAISDFTEAIQ 443
            G      G Y  A++ + Q L  D    +  +    R        + + A ++ ++AI+
Sbjct: 34  EGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
            +    +A  RR QA   LG   +A+ DL + +  EP +      
Sbjct: 94  KDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 3/95 (3%)

Query: 428 QRELEAAISDFTEAIQSNPSAGE---AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
             +   A++ +T+A+  + +  +     + R      L +  +A  + SKA+E +     
Sbjct: 41  CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA 519
            L+ R     K    + AV DL  CV L+ +NK  
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 28/151 (18%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG---LALSSI 530
           +      +S + L + G   FK  D+  A+   +  + LD   +               +
Sbjct: 19  RPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKL 78

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y KAE    KAI+ D                                      KA + 
Sbjct: 79  EDYDKAETEASKAIEKDGGD----------------------------------VKALYR 104

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIEC 621
           R   L  LG+  +A+ DL   + ++P N   
Sbjct: 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVF 135

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           L  + KA  + S  +  D  +++ LY R+     +G   +AV
Sbjct: 78  LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV 119

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 14/112 (12%)

Query: 531 GEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA 587
           G   +A   + KAI      ++  E +  L   ++ L    KA   L   +         
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                ++L+ LG++++ ++ L   +     +             I  Y++A+
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDD-----------ETIQSYKQAI 104

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 64.7 bits (158), Expect = 7e-13
 Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 395 GKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           G  A A+  +++ +    +     E  +G G+      E   A +     ++  P+    
Sbjct: 4   GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADIL-HERGI 491
                     LG   + ++ L K +    +   I  +++ I
Sbjct: 64  RVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 55.9 bits (135), Expect = 8e-10
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 430 ELEAAISDFTEAIQ---SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADIL 486
               A+  + +AI          E +   G     LGE  +A   L+  ++  PN   + 
Sbjct: 5   LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64

Query: 487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
               +V +    +   VE L   +    +++           +I  YK+A   +     L
Sbjct: 65  VFYAMVLYNLGRYEQGVELLLKIIAETSDDE-----------TIQSYKQAILFYADK--L 111

Query: 547 DRNF 550
           D  +
Sbjct: 112 DETW 115

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.8 bits (127), Expect = 8e-09
 Identities = 20/120 (16%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 462 LGESVEAIQDLSKALEF---EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
           LG   +A+    KA+       + A+     G       ++  A   L+  VK    +++
Sbjct: 3   LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
              +  + L ++G Y++  E  LK I    +            + + + ++A+      L
Sbjct: 63  LRVFYAMVLYNLGRYEQGVELLLKIIAETSD-----------DETIQSYKQAILFYADKL 111

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 18/100 (18%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L  G      G+Y  A ++    +K+ P +    +            E  +    + I  
Sbjct: 31  LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSAD 484
                                 E IQ   +A+ F  +  D
Sbjct: 91  TSDD------------------ETIQSYKQAILFYADKLD 112

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 7/77 (9%)

Query: 54  KAIRI--LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGC 111
           KAI        LA+ Y           +  L  ++         ++  P      +    
Sbjct: 15  KAIASGLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69

Query: 112 AFSALGRKEEALSVWEK 128
               LGR E+ + +  K
Sbjct: 70  VLYNLGRYEQGVELLLK 86

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.5 bits (169), Expect = 2e-12
 Identities = 109/641 (17%), Positives = 187/641 (29%), Gaps = 216/641 (33%)

Query: 65  QSYEIQDICN---RAF-----CYSQLELHKHVI--RDCDKALQLDPTLLQAYILKGCAFS 114
             Y+ +DI +    AF     C    ++ K ++   + D  +     +     L    F 
Sbjct: 14  HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FW 69

Query: 115 ALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTV 174
            L  K+E +                +++F+E        + +      Y     MS +  
Sbjct: 70  TLLSKQEEM----------------VQKFVE-----EVLRIN------YKF--LMSPI-- 98

Query: 175 SESGLNANDKMSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSV 234
                         +E    S +     + RD             L N     AK   +V
Sbjct: 99  -------------KTEQRQPSMMTRMYIEQRDR------------LYNDNQVFAKY--NV 131

Query: 235 PVSKSGLHINGKLREVSENHN-------GSSDGSKSTHASRDASEINRQSSDDFDI---- 283
              +  L +   L E+    N       GS  G K+  A         Q   DF I    
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGS--G-KTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 284 ---CNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSD 340
              CN P                   V + L      + D N  S S   S+I     S 
Sbjct: 189 LKNCNSP-----------------ETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSI 230

Query: 341 STESRSKLSFK------------WDMLKETSNEAKRNKKF---C---VTRISKSKSISVD 382
             E R  L  K             +        AK    F   C   +T  ++ K +  D
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--------AKAWNAFNLSCKILLT--TRFKQV-TD 279

Query: 383 FRLSRGIAQVNEGKYAS------AISIFDQILKEDP-MYPEALIGRGTARAFQRELEA-- 433
           F  +     ++   ++         S+  + L   P   P                E   
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR---------------EVLT 324

Query: 434 ----AISDFTEAIQSNPSAGEAWKRRGQAR--AALGESVEAI-----QDLSKALEFEPNS 482
                +S   E+I+   +  + WK     +    +  S+  +     + +   L   P S
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 483 ADI----LHERGIV--NFKFKDFNAAVED-LSACVK---LDKENK-SAYTYLGLALSSIG 531
           A I    L    ++  +    D    V   ++   K   ++K+ K S  +   + L    
Sbjct: 385 AHIPTILL---SLIWFDVIKSD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437

Query: 532 EYKKAEEAHLKAI---QLDRNFLEAWGHLTQFYQD----------LANSEKALE-CLQQV 577
           + +     H   +    + + F      L   Y D          L N E      L ++
Sbjct: 438 KLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 578 LYIDKRF--------SKAYHLRGLLLHGLGQ---HKKAIKD 607
           +++D RF        S A++  G +L+ L Q   +K  I D
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 7e-09
 Identities = 62/494 (12%), Positives = 135/494 (27%), Gaps = 129/494 (26%)

Query: 253 NHNGSSDGSKSTHASRDASEINRQS-SDDFDICNGPIDKASVNERHGRQTNGTHDVHDKL 311
           +H+   +  +  +  +D   +   +  D+FD C    D         +      ++   +
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMP-------KSILSKEEIDHII 55

Query: 312 SSDSA---------SLNDSNTNS-ESYSKSSISDN----KSSDSTESRSKLSFKWDMLKE 357
            S  A         +L        + + +  +  N     S   TE R   S    M  E
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIE 114

Query: 358 TSNEAKRN----KKFCVTRISKSKSISVDFRLSRGIAQVNEGKY---------------A 398
             +    +     K+ V+R+          +L + + ++   K                 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYL------KLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 399 SAISIFD-QILKEDPMY---------PEALIGRGTARAFQRELE-AAISDFTEAIQSNPS 447
                +  Q   +  ++         PE ++       +Q +    + SD +  I+    
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 448 AGEAWKRRGQARAALGES---VEAIQDLSKALE-FEPNS-----------ADILHERGIV 492
           + +A  RR             +  +Q+ +KA   F  +             D L      
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 493 NFKFKDFNAAVED------LSACVKLDKEN--KSAYTYLGLALSSIGE-----------Y 533
           +      +  +        L   +    ++  +   T     LS I E           +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 534 KKAE-EAHLKAIQLDRNFLEAWGHLTQFYQDLA------N-SEKALECL------QQVLY 579
           K    +     I+   N LE      + +  L+      +     L  +        V+ 
Sbjct: 348 KHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406

Query: 580 IDKRFSK-----------AYHLRGLLLHGLGQ-------HKKAIKDLSSGLGIDPSNIEC 621
           +  +  K              +  + L    +       H+  +   +     D  ++  
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 622 LYLRASCYHAIGEY 635
            YL    Y  IG +
Sbjct: 467 PYLDQYFYSHIG-H 479

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 64.1 bits (157), Expect = 3e-12
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A+  LG     +G ++ A  AH + + + + F +      A+ +L   Y  L   E A 
Sbjct: 10  RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETAS 69

Query: 572 ECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI 619
           E  ++ L + ++       +++ +  G     L  ++KAI        ++  L       
Sbjct: 70  EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG 129

Query: 620 ECLYLRASCYHAIGEYREAV 639
              +   + Y A+G + +A+
Sbjct: 130 RACWSLGNAYTALGNHDQAM 149

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 18/142 (12%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKA 536
                  G  ++   +F  AV      + + KE         AY+ LG A   +GE++ A
Sbjct: 9   GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETA 68

Query: 537 EEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF------ 584
            E + K + L R   +      +   L   Y  L + EKA++   + L I +        
Sbjct: 69  SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128

Query: 585 SKAYHLRGLLLHGLGQHKKAIK 606
            +A    G     LG H +A+ 
Sbjct: 129 GRACWSLGNAYTALGNHDQAMH 150

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 27/157 (17%)

Query: 454 RRGQARA---------ALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD 498
           R  Q RA          LG   +A+    + L        +          G       +
Sbjct: 5   RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           F  A E     + L ++ K       +   LG   + + +Y+KA + HLK + + +   +
Sbjct: 65  FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 124

Query: 553 ------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
                 A   L   Y  L N ++A+   ++ L I + 
Sbjct: 125 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 24/148 (16%)

Query: 422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA---------ALGESVEAIQDL 472
           G           A+    + +      G+   +  +  A          LGE   A +  
Sbjct: 16  GNTHYLLGNFRDAVIAHEQRLLIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYY 72

Query: 473 SKALEF------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK------SAY 520
            K L            A   +  G      +D+  A++     + + +E K       A 
Sbjct: 73  KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 132

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDR 548
             LG A +++G + +A     K +++ R
Sbjct: 133 WSLGNAYTALGNHDQAMHFAEKHLEISR 160

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 11/75 (14%), Positives = 28/75 (37%)

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
               L           +A     + ++ D +++  + HL + Y+ L  ++ A++   Q +
Sbjct: 9   TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68

Query: 579 YIDKRFSKAYHLRGL 593
            + +       L  L
Sbjct: 69  EVAREEGTQKDLSEL 83

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 61.5 bits (150), Expect = 5e-12
 Identities = 13/75 (17%), Positives = 26/75 (34%)

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
           EDP  P                  A++ F E ++++P     +   G+    L  + +AI
Sbjct: 2   EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

Query: 470 QDLSKALEFEPNSAD 484
              ++ +E       
Sbjct: 62  DTYAQGIEVAREEGT 76

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 2/94 (2%)

Query: 479 EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE 538
           +P      +     + K  + + A+      V+ D +    Y +LG     +     A +
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 539 AHLKAIQLDRNFLEA--WGHLTQFYQDLANSEKA 570
            + + I++ R          L          E  
Sbjct: 63  TYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHH 96

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
                   L Q +    N+ +AL   ++++  D  +   Y+  G L   L +   AI   
Sbjct: 5   EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 609 SSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           + G+ +                 + E ++A
Sbjct: 65  AQGIEVAREEGTQ--------KDLSELQDA 86

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 50.0 bits (120), Expect = 5e-08
 Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A  + + +     +   ++ ++ DP  +  Y   G  +  L R ++A+  + +G E A
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 134 LHQSADLKQFLELEELLTAAKQ 155
             +    K   EL++    A+ 
Sbjct: 72  -REEGTQKDLSELQDAKLKAEG 92

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 5/87 (5%)

Query: 386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN 445
           +     +     + A+++F+++++ DP Y       G         + AI  + + I+  
Sbjct: 12  ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71

Query: 446 PSAGEAWKRRGQARAALGESVEAIQDL 472
              G       +  + L ++    + L
Sbjct: 72  REEGTQ-----KDLSELQDAKLKAEGL 93

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 6/56 (10%), Positives = 14/56 (25%)

Query: 584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
                +             +A+      +  DP  +   Y     Y  +    +A+
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAI 61

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 63.8 bits (156), Expect = 9e-12
 Identities = 26/203 (12%), Positives = 55/203 (27%), Gaps = 27/203 (13%)

Query: 460 AAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           AA    +   A +     L     ++      G V      F+ A     A  +  +++ 
Sbjct: 1   AAFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 518 ------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE-------AWGHLTQFYQDL 564
                  A   +G+     G +  A    L+  +L  +  E           +       
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 565 ANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI---- 614
            +   A +  ++ L   ++       + A+   G L        +A +       I    
Sbjct: 121 GDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAEL 180

Query: 615 -DPSNI-ECLYLRASCYHAIGEY 635
            D   + E +       H    +
Sbjct: 181 EDSEAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 18/141 (12%), Positives = 35/141 (24%), Gaps = 19/141 (13%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
            A   LG   + +  + +A  +     Q  +   +      A   +    +   N + A 
Sbjct: 27  GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86

Query: 572 ECLQQVLYIDKRF-------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGI-----DPSNI 619
            C  +   +           S   +    +    G    A ++    L       D   I
Sbjct: 87  RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI 146

Query: 620 ECLYLR-ASCYHAIGEYREAV 639
            C +              EA 
Sbjct: 147 ACAFRGLGDLAQQEKNLLEAQ 167

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 30/200 (15%)

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF------EP 480
              E +A        +    +A  A    G   A +    EA        +         
Sbjct: 9   ALAERQAQ-----ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63

Query: 481 NSADILHERGIVNFKFKDFNAAVE----DLSACVKL-DKENKSAYTY--LGLALSSIGEY 533
                LH+ G+V     +++AA      +      L +    ++     +       G+ 
Sbjct: 64  AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123

Query: 534 KKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKALECLQQVLYIDKRF--- 584
             A + + K++   +   +      A+  L    Q   N  +A +   +   I       
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183

Query: 585 ---SKAYHLRGLLLHGLGQH 601
              ++       L H    H
Sbjct: 184 EAVNELMTRLNGLEHHHHHH 203

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 28/176 (15%), Positives = 50/176 (28%), Gaps = 25/176 (14%)

Query: 395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR 454
             YA A      +L        A    G   AF    + A + F    Q    +G+    
Sbjct: 6   HDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---H 62

Query: 455 RGQARA---------ALGESVEAIQDLSKALEF-------EPNSADILHERGIVNFKFKD 498
             + RA           G    A +   +  E           ++   +E   V   F D
Sbjct: 63  TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD 122

Query: 499 FNAAVEDLSACVKLDKENK------SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              A ++    +   ++         A+  LG          +A++  L+A  +  
Sbjct: 123 LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 14/126 (11%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF- 584
           A  +        +A    +        A   L   Y  +   ++A    Q +    ++  
Sbjct: 2   AFEAHDYALAERQAQ-ALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG 60

Query: 585 -----SKAYHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNI-ECLYLRASCYHAI 632
                 +A H  G++    G    A +      +L + L  DP       Y  A+     
Sbjct: 61  DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHF 120

Query: 633 GEYREA 638
           G+   A
Sbjct: 121 GDLAGA 126

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 7/80 (8%)

Query: 53  SKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA 112
            + I          Y      N+A    +L  +   I+ C + L+   T     I     
Sbjct: 28  DQLIT-AQPQNPVGY-----SNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81

Query: 113 FSALGRKEEALSVWEKGYEH 132
           +  L   + A+   +     
Sbjct: 82  Y-RLELAQGAVGSVQIPVVE 100

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 59.6 bits (145), Expect = 3e-11
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 1/108 (0%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
           +  +   E+G   FK   +  AV      +    +N   Y+   +AL  +GEY +A +  
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAY 588
            + ++               Y+ L  ++ A+  +Q  +       + Y
Sbjct: 62  QQGLRYTSTAEHVAIRSKLQYR-LELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 6/97 (6%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G +   +G Y  A+  +DQ++   P  P     +  A     E   AI    + ++   
Sbjct: 10  QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69

Query: 447 SAGEAWKRR------GQARAALGESVEAIQDLSKALE 477
           +A     R         A+ A+G     + ++ +  E
Sbjct: 70  TAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPE 106

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.1 bits (128), Expect = 6e-09
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 1/96 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +G +    G   EA+    + +  +P +      + +   K  ++  A++     
Sbjct: 5   EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           ++     +       L    +   + A  +    + 
Sbjct: 65  LRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
             A+  + + I + P     +  +  A   LGE  +AIQ   + L +   +  +   R  
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 492 VNFKFKDFNAAVEDL-SACVKLDKENKSA 519
           + ++ +    AV  +    V++D+  +  
Sbjct: 80  LQYRLELAQGAVGSVQIPVVEVDELPEGY 108

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 568 EKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS 627
            +A+ C  Q++    +    Y  + + L  LG++ +AI+    GL    +      +R+ 
Sbjct: 21  REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHV-AIRSK 79

Query: 628 CYHAIGEYREAV 639
             + +   + AV
Sbjct: 80  LQYRLELAQGAV 91

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 64.4 bits (156), Expect = 3e-11
 Identities = 27/204 (13%), Positives = 54/204 (26%), Gaps = 50/204 (24%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-----VEAIQDLSKALEFEPNSAD 484
                        +  P  G       QA   L          A + L + ++  P    
Sbjct: 175 NQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 485 ILHERGIVN--------FKFKDFNAAVEDLSACVKLDKENKSAYTY--LGLALSSIGEYK 534
              E+ +V+           K   A   ++   V L + N  +  Y    ++    G+  
Sbjct: 235 ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTD 294

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           ++ +A    I L+ ++L                                    Y L G +
Sbjct: 295 ESYQAINTGIDLEMSWL-----------------------------------NYVLLGKV 319

Query: 595 LHGLGQHKKAIKDLSSGLGIDPSN 618
               G +++A     +   + P  
Sbjct: 320 YEMKGMNREAADAYLTAFNLRPGA 343

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 62.8 bits (152), Expect = 1e-10
 Identities = 26/189 (13%), Positives = 55/189 (29%), Gaps = 17/189 (8%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAF-----QRELEAAISDFTEAIQSNPSAGEAWKR 454
              + + + K  P     L     A  +      + L  A     E +QS+P    A   
Sbjct: 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAE 238

Query: 455 RGQARAAL--------GESVEAIQDLSKALEF--EPNSADILHERGIVNFKFKDFNAAVE 504
           +                +      ++   +      N + I   + +        + + +
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-WGHLTQFYQD 563
            ++  + L+  +   Y  LG      G  ++A +A+L A  L        W     F   
Sbjct: 299 AINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQTS 357

Query: 564 LANSEKALE 572
           +      L+
Sbjct: 358 VPYVVPYLD 366

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 53.6 bits (128), Expect = 1e-07
 Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 3/112 (2%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQI--LKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
             +      ++E + A+  +  D I  L E          +  +   + + + +      
Sbjct: 243 DIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINT 302

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
            I    S    +   G+     G + EA      A    P +  +      +
Sbjct: 303 GIDLEMSW-LNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 11/139 (7%)

Query: 50  RNWSKAIRI------LDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +++  AI+       L+   A  Y      NR+  Y + E + + + D  +A++LD   +
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYY-----GNRSLAYLRTECYGYALGDATRAIELDKKYI 74

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           + Y  +  +  ALG+   AL  +E   +   H      ++ E  +++     +R++  + 
Sbjct: 75  KGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134

Query: 164 DVSNSMSSLTVSESGLNAN 182
              + + SL +    +   
Sbjct: 135 HKRSVVDSLDIESMTIEDE 153

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 24/93 (25%), Positives = 40/93 (43%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            ++ E AI  +++AI+ NPS    +  R  A         A+ D ++A+E +       +
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
            R   N     F AA+ D    VK+   +K A 
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAK 111

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 11/163 (6%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
              Y +AI  + Q ++ +P        R  A         A+ D T AI+ +    + + 
Sbjct: 19  AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADIL--HERGIVNFKFKDFNAAVEDLSACVK 511
           RR  +  ALG+   A++D    ++ +P+  D    ++      K K F  A+        
Sbjct: 79  RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA------- 131

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
            D+  +S      L + S+    +     L+  ++  +F++  
Sbjct: 132 GDEHKRSVVD--SLDIESMTIEDEYSGPKLEDGKVTISFMKEL 172

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.8 bits (122), Expect = 8e-07
 Identities = 19/88 (21%), Positives = 44/88 (50%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
            +Y+ A + + +AI+L+ +    +G+ +  Y        AL    + + +DK++ K Y+ 
Sbjct: 20  KDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR 79

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           R      LG+ + A++D  + + + P +
Sbjct: 80  RAASNMALGKFRAALRDYETVVKVKPHD 107

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 45/106 (42%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
                 E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+
Sbjct: 1   GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN 549
            D +  ++LDK+    Y     +  ++G+++ A   +   +++  +
Sbjct: 61  GDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 106

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 25/174 (14%), Positives = 64/174 (36%), Gaps = 9/174 (5%)

Query: 353 DMLKETSNEAKRNKKFCVTRISKSKSISVD-----FRLSRGIAQVNEGKYASAISIFDQI 407
           + LK  +N+  + K +       S++I ++     +  +R +A +    Y  A+    + 
Sbjct: 7   EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 66

Query: 408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR----RGQARAALG 463
           ++ D  Y +    R  +     +  AA+ D+   ++  P   +A  +        +    
Sbjct: 67  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 126

Query: 464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK 517
           E   A  +  +++    +   +  E      K +D    +  +   ++  K+ K
Sbjct: 127 ERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQK 180

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 56.6 bits (138), Expect = 2e-10
 Identities = 26/81 (32%), Positives = 39/81 (48%)

Query: 412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD 471
               EA    G A   Q + + AI  + +A++ +P+  EAW   G A    G+  EAI+ 
Sbjct: 6   GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65

Query: 472 LSKALEFEPNSADILHERGIV 492
             KALE +PN+A+     G  
Sbjct: 66  YQKALELDPNNAEAKQNLGNA 86

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 52.0 bits (126), Expect = 8e-09
 Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 34/115 (29%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           EAW   G A    G+  EAI+   KALE +PN+A+                         
Sbjct: 10  EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------------- 44

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
                    A+  LG A    G+Y +A E + KA++LD N  EA  +L    Q  
Sbjct: 45  ---------AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 90

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 23/77 (29%), Positives = 37/77 (48%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G A   +G Y  AI  + + L+ DP   EA    G A   Q + + AI  + +A++ +P
Sbjct: 15  LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74

Query: 447 SAGEAWKRRGQARAALG 463
           +  EA +  G A+   G
Sbjct: 75  NNAEAKQNLGNAKQKQG 91

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 46.6 bits (112), Expect = 8e-07
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL 608
           N  EAW +L   Y    + ++A+E  Q+ L +D   ++A++  G   +  G + +AI+  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66

Query: 609 SSGLGIDPSNIECLYLRASCYHAIG 633
              L +DP+N E      +     G
Sbjct: 67  QKALELDPNNAEAKQNLGNAKQKQG 91

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 55.4 bits (134), Expect = 6e-10
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 421 RGTARAFQRELEAAISDFTEAIQSNP-SAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                  Q ++E A+    E +Q+ P    EA+   G A   LG+  +A+ +   A+E  
Sbjct: 6   TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65

Query: 480 PNSADILHER---GIVNFKFKDF 499
           P+S  +   +    I+NF  KD 
Sbjct: 66  PDSPALQARKMVMDILNFYNKDM 88

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAI 442
           +L      +N+G   +A+   ++ L+ +P+   EA    G A     + + A++++  AI
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 443 QSNPSAGEAWKRR 455
           + NP +     R+
Sbjct: 63  ELNPDSPALQARK 75

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.9 bits (104), Expect = 8e-06
 Identities = 19/110 (17%), Positives = 38/110 (34%), Gaps = 16/110 (14%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-AYTYLGLALSSIGEYKKAEEA 539
            +   L  +G       D   A++ L   ++ +   K  AY  +G A   +G+++KA   
Sbjct: 5   KTIKELINQG-------DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57

Query: 540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
           +  AI+L+ +                     L    + +Y        +H
Sbjct: 58  YQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHHHHHH 99

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 562 QDLANSEKALECLQQVLYID-KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
            +  + E AL+ L++ L  +     +AY+L G     LG  +KA+ +  S + ++P +
Sbjct: 11  INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF 584
            L + G+ + A +A  + +Q +     EA+  +   Y+ L + +KAL   Q  + ++   
Sbjct: 9   ELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68

Query: 585 SKAYHLRGLL 594
                 + ++
Sbjct: 69  PALQARKMVM 78

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 59.4 bits (143), Expect = 8e-10
 Identities = 33/220 (15%), Positives = 58/220 (26%), Gaps = 20/220 (9%)

Query: 429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILH 487
                ++  FTE    + SA +AW      R   G+     +           +  +   
Sbjct: 20  MSEARSLDLFTEITNYDESACDAW----IGRIRCGDTDRVTLFRAWY------SRRNFGQ 69

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---LGLALSSIGEYKKAEEAHLKAI 544
             G V       NA +        +     S            ++ G Y  A EA   A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK 602
                 L AW     +          ++ ++       +F    A    G+    L    
Sbjct: 130 VAGSEHLVAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 603 KAIKDLSSGLG---IDPSNIECLYLRASCYHAIGEYREAV 639
           +A + L+        +       +  A    + G    AV
Sbjct: 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAV 228

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 31/240 (12%), Positives = 69/240 (28%), Gaps = 35/240 (14%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTAR------------------A 426
               ++ +     A ++ +F +I   D    +A IGR                       
Sbjct: 11  FESAVS-MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQ 69

Query: 427 FQRELEAAISDFTEAIQSNP----------SAGEAWKRRGQARAALGESVEAIQDLSKAL 476
               ++ ++S     I              S            AA G   +A++ L  A 
Sbjct: 70  LSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAP 129

Query: 477 EFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYK 534
                       + +V    + +   ++ + +  K   +    +A    G+A +++  + 
Sbjct: 130 VAGSEHLVAW-MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFT 188

Query: 535 KAEEAHLKAIQLDRN---FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR 591
           +AE    +A               +L    +   N   A+  L+ +         A  L+
Sbjct: 189 EAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALK 248

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI------------CNRAFCYSQLELHKHVIRDCDKAL 96
           +  +  A+  LD+L+ +    +               N + CY  +           + L
Sbjct: 31  IDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90

Query: 97  QLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           + + T  +A   +  A  A  + +EA                DLK  L   
Sbjct: 91  KREETNEKALFRRAKARIAAWKLDEAE--------------EDLKLLLRNH 127

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 396 KYASAISIFDQILKEDPMYPEALIGRGTARAF-----------QRELEAAISDFTEAIQS 444
            Y  A++  D ++  +       +                     +L  A    +E ++ 
Sbjct: 33  AYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE 488
             +  +A  RR +AR A  +  EA +DL   L   P +A ++  
Sbjct: 93  EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 21/150 (14%), Positives = 37/150 (24%), Gaps = 17/150 (11%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           +  Y  AI  +   L                          +      + +N        
Sbjct: 24  QKDYKEAIDAYRDALTRLDTLILR-------EKPGEPEWVELDRKNIPLYAN-------- 68

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
              Q    +G+  EA +  S+ L+ E  +   L  R          + A EDL   ++  
Sbjct: 69  -MSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127

Query: 514 KENKSAYT-YLGLALSSIGEYKKAEEAHLK 542
               S     + +      E K        
Sbjct: 128 PAAASVVAREMKIVTERRAEKKADSRVTYS 157

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 24/138 (17%), Positives = 47/138 (34%), Gaps = 16/138 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            S + L ++G   F  KD+  A++     +                    GE +  E   
Sbjct: 9   KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL--------REKPGEPEWVELDR 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
                        + +++Q Y ++ +  +A E   +VL  ++   KA   R        +
Sbjct: 61  KNIP--------LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK 112

Query: 601 HKKAIKDLSSGLGIDPSN 618
             +A +DL   L   P+ 
Sbjct: 113 LDEAEEDLKLLLRNHPAA 130

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 16/81 (19%), Positives = 32/81 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            +    ++    +     +N G    A     ++LK +    +AL  R  AR    +L+ 
Sbjct: 56  VELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDE 115

Query: 434 AISDFTEAIQSNPSAGEAWKR 454
           A  D    ++++P+A     R
Sbjct: 116 AEEDLKLLLRNHPAAASVVAR 136

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           +G   +A +  S  L  + +N + L+ RA    A  +  EA 
Sbjct: 76  IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE 117

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 16/124 (12%)

Query: 394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----------------QRELEAAISD 437
           + +   AI  + + L       E        +                   ++   AI  
Sbjct: 51  KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110

Query: 438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK 497
            ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   +   K K
Sbjct: 111 ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170

Query: 498 DFNA 501
           +   
Sbjct: 171 EARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 10/117 (8%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI----------CNRAFCYSQLELHKHVIRDCDKALQL 98
           +  + +A+           +I              N A CY++ + +   I    K L++
Sbjct: 58  IVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
           D   ++A    G A    G  EEA     K      +       +      L  A++
Sbjct: 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+                Y     AL      ++ ++  
Sbjct: 36  QSAFDIKEEGNEFFKKNEINEAIV--------------KYKE---ALDFFIHTEEWDDQI 78

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 79  -LLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA 433
            K K+I +   L+          Y  AI    ++LK D    +AL   G A  +   LE 
Sbjct: 81  DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140

Query: 434 AISDFTEAIQSNPSAGEA 451
           A  +  +A   NP+  + 
Sbjct: 141 AKENLYKAASLNPNNLDI 158

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 568 EKALECLQQVLYID--------KRFSKAYHL-RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
           ++AL+        D        K    + +L      +    + KAI   S  L ID +N
Sbjct: 62  KEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121

Query: 619 IECLYLRASCYHAIGEYREAV 639
           ++ LY         G   EA 
Sbjct: 122 VKALYKLGVANMYFGFLEEAK 142

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 15/130 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTA--------RAF----QREL 431
           RG     EGKY  A+  + +I+     +  +      +  A         A      +  
Sbjct: 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 272

Query: 492 VNFKFKDFNA 501
              + +   A
Sbjct: 273 CQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 9/116 (7%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDI---------CNRAFCYSQLELHKHVIRDCDKALQLD 99
           L  + K +  L+   + S E              N A C+ +L+     I  C+KAL+LD
Sbjct: 167 LLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
               +    +G A  A+   E A + ++K  +   +  A   Q    ++ +     
Sbjct: 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 33/157 (21%), Positives = 48/157 (30%), Gaps = 19/157 (12%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             + I+ ERG V FK   +  A+      V           +L    S   E  +  +A 
Sbjct: 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVS----------WLEYESSFSNEEAQKAQAL 194

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
             A  L  N       L   +  L     A+E   + L +D    K    RG     +  
Sbjct: 195 RLASHL--N-------LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            + A  D    L + P+N       A C   I     
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA 434
           K++++ +   L+  +  +    +++AI   ++ L+ D    + L  RG A     + E A
Sbjct: 190 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA 249

Query: 435 ISDFTEAIQSNPSAGEA 451
            +DF + +Q  P+   A
Sbjct: 250 RADFQKVLQLYPNNKAA 266

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 41.0 bits (96), Expect = 9e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%)

Query: 598 LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
           L     AI+  +  L +D +N + L  R   + A+ ++  A 
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELAR 250

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 56.9 bits (137), Expect = 8e-09
 Identities = 40/308 (12%), Positives = 88/308 (28%), Gaps = 41/308 (13%)

Query: 372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARA 426
           +  +  ++  +F   R    +N+G    A  +    L+E P         A    G    
Sbjct: 5   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 64

Query: 427 FQRELEAAISDFTEAIQSNPSAGE------AWKRRGQARAALGESVEAIQDLSKALE--- 477
            + EL  +++   +  Q             +  ++ +   A G    A +   KA +   
Sbjct: 65  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 124

Query: 478 -----FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE---NKSAYTYLGLALSS 529
                  P    ++  R  + + +   + A     + +++       +       L   S
Sbjct: 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184

Query: 530 I--GEYKKAEEAHLKAIQLDRNFLEAWGHLT-------QFYQDLANSEKALECLQQVLYI 580
           +  G+   A     +   L  N       ++        ++Q   +   A   L+     
Sbjct: 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244

Query: 581 DKRFS----KAYHLRGLLLHGLGQHKKAIKDL------SSGLGIDPSNIECLYLRASCYH 630
           +   +      +         LG+ + A   L      +  L +       L L    Y 
Sbjct: 245 EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304

Query: 631 AIGEYREA 638
             G   +A
Sbjct: 305 QAGRKSDA 312

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 47.7 bits (113), Expect = 8e-06
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 30/225 (13%)

Query: 384 RLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAI 435
            + +      +G   +A    ++          ++ PM+   +  R         L+ A 
Sbjct: 96  LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155

Query: 436 SDFTEAIQSNPSAGEAWKRRG---QARAAL--GESVEAIQDLSKALEFEPNS-------A 483
           +     I+   S     + +      + +L  G+   A   L++      N        +
Sbjct: 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----SAYTYLGLALSSIGEYKKAEE- 538
           +    R I      D  AA   L    K +  N       +  +  A   +GE++ AE  
Sbjct: 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIV 275

Query: 539 -----AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
                 + ++++L  +       L Q Y        A   L   L
Sbjct: 276 LEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 21/147 (14%), Positives = 42/147 (28%), Gaps = 25/147 (17%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+    E+
Sbjct: 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAIK--------DLSSGLG 613
                Q+ L I +          +K  +         G+ K+A                G
Sbjct: 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAV 639
                N              G+ ++  
Sbjct: 232 SVDDENKPIWMHAEEREECKGKQKDGT 258

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 20/140 (14%), Positives = 44/140 (31%), Gaps = 23/140 (16%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+Y++ E  + +A+++ +        N  +   +L   Y      ++A    
Sbjct: 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLY 218

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +          G+ K        G       +D P+  
Sbjct: 219 KEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVT 278

Query: 620 ECLYLRASCYHAIGEYREAV 639
             L    + Y   G++  A 
Sbjct: 279 TTLKNLGALYRRQGKFEAAE 298

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 24/146 (16%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
                L +  +S G Y+ A     +A++                   L   Y+D    + 
Sbjct: 28  RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI-------KDLSSGLGI 614
           A   L   L I ++         +   +   +L    G++K+A        +     LG 
Sbjct: 88  AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 147

Query: 615 D-PSNIECLYLRASCYHAIGEYREAV 639
           D P   + L   A      G+Y E  
Sbjct: 148 DHPDVAKQLNNLALLCQNQGKYEEVE 173

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 1e-04
 Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 15/104 (14%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------NFLEAWGHLTQFYQDLANSE 568
                L       G++K+AE  + + +                  W H  +  +     +
Sbjct: 196 KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQK 255

Query: 569 KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIK 606
                 +   +           +      G L    G+ + A  
Sbjct: 256 DGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 23/72 (31%), Positives = 32/72 (44%)

Query: 430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER 489
           + + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E 
Sbjct: 288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL 347

Query: 490 GIVNFKFKDFNA 501
             V  K K    
Sbjct: 348 LKVKQKIKAQKD 359

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 35/81 (43%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           + +   A+    +ALE +P++   L+ R       K+++ A+ DL    ++  E+K+   
Sbjct: 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 345

Query: 522 YLGLALSSIGEYKKAEEAHLK 542
            L      I   K  E+A   
Sbjct: 346 ELLKVKQKIKAQKDKEKAAYA 366

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 45.1 bits (107), Expect = 4e-05
 Identities = 20/109 (18%), Positives = 45/109 (41%), Gaps = 24/109 (22%)

Query: 49  LRNWSKAIRILD--------SLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQL 98
           ++ ++K +R ++        +  A+   +   C  N   C  ++   +  +  C +AL++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302

Query: 99  DPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
           DP+  +A   +   +  L   ++AL              ADLK+  E+ 
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQAL--------------ADLKKAQEIA 337

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 28/142 (19%), Positives = 50/142 (35%), Gaps = 17/142 (11%)

Query: 377 KSISVDFRLSRGIAQVNEGKYASAISIFD---QILKEDPMYPEALIGRGTARAF------ 427
           +  + D R   G +   E K   A+  ++     + +D M+      +  A A       
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234

Query: 428 --------QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE 479
                    +  + AI      +       +A  RRG+A+A LG+   A  D  KA ++ 
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294

Query: 480 PNSADILHERGIVNFKFKDFNA 501
           P+   I  E   +  + K    
Sbjct: 295 PDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 49  LRNWSKAIRIL---------DSLLAQSYEIQDIC--NRAFCYSQLELHKHVIRDCDKALQ 97
           ++ +  AI  +               +  +++ C  N A C  +L+ +   I  C+  L 
Sbjct: 199 MQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258

Query: 98  LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQ 155
            +    +A   +G A + LG+ + A   + K  ++A    A  ++   L E   A  Q
Sbjct: 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 25/155 (16%), Positives = 43/155 (27%), Gaps = 17/155 (10%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           AD     G   FK +    A++     +    ++              G+Y+    A   
Sbjct: 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVKN 230

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
              L  N       +      L   ++A+     VL  +++  KA   RG     LGQ  
Sbjct: 231 PCHL--N-------IAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMD 281

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            A  D        P +        +         +
Sbjct: 282 SARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 55.1 bits (132), Expect = 4e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
            RE   A+    +A+  + +  +   RRG+A+  + E   A  D  K LE  P +     
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 488 ERGIVNFKFKDFNA 501
           +  +   K K+ N 
Sbjct: 390 QISMCQKKAKEHNE 403

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 49  LRNWSKAIRILDSLLAQSYEIQDIC---------NRAFCYSQLELHKHVIRDCDKALQLD 99
           +  + K +  L+     S +              N A CY +L  +   +  CDKAL LD
Sbjct: 288 VIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347

Query: 100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELE 147
               +    +G A   +   E A                D ++ LE+ 
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAK--------------GDFEKVLEVN 381

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 16/76 (21%), Positives = 35/76 (46%)

Query: 462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT 521
           L E  +A++   KAL  +  +   L+ RG       +F +A  D    ++++ +NK+A  
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389

Query: 522 YLGLALSSIGEYKKAE 537
            + +      E+ + +
Sbjct: 390 QISMCQKKAKEHNERD 405

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 35/154 (22%), Positives = 56/154 (36%), Gaps = 19/154 (12%)

Query: 484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKA 543
            I+ E+G V FK   +  AV           +     ++L +      +  KA E+ L A
Sbjct: 269 AIVKEKGTVYFKGGKYMQAV----------IQYGKIVSWLEMEYGLSEKESKASESFLLA 318

Query: 544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
             L+         L   Y  L    KA+EC  + L +D    K  + RG     + + + 
Sbjct: 319 AFLN---------LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFES 369

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
           A  D    L ++P N       + C     E+ E
Sbjct: 370 AKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNE 403

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 25/147 (17%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEK 569
           +    L +     G+YK+AE    +A+++    L        +   +L    Q+   +E+
Sbjct: 86  ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEE 145

Query: 570 ALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI----KDLSSG----LG 613
                ++ L I            +K  +         G+++ A     + L+       G
Sbjct: 146 VEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205

Query: 614 ID-PSNIECLYLRASCYHAIGEYREAV 639
                N            +  + R++ 
Sbjct: 206 SVNGDNKPIWMHAEEREESKDKRRDSA 232

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 27/141 (19%), Positives = 47/141 (33%), Gaps = 24/141 (17%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQDLANSEKALECL 574
           L L      +YK+A      A+ +    L            +L   Y      ++A    
Sbjct: 49  LALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLC 108

Query: 575 QQVLYIDKRFS--------KAYHLRGLLLHGLGQHKKAIKDLSSGLGI--------DPSN 618
           ++ L I ++          K  +   LL    G+ ++        L I        DP+ 
Sbjct: 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168

Query: 619 IECLYLRASCYHAIGEYREAV 639
            +     ASCY   G+Y++A 
Sbjct: 169 AKTKNNLASCYLKQGKYQDAE 189

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 17/140 (12%), Positives = 40/140 (28%), Gaps = 23/140 (16%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDR--------NFLEAWGHLTQFYQDLANSEKALECL 574
           L L   + G+ ++ E  + +A+++          N  +   +L   Y      + A    
Sbjct: 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY 192

Query: 575 QQVLYIDKRFS---------KAYHLRGLLLHGLGQHKKAIKDLSSG-----LGID-PSNI 619
           +++L                  +           + + +      G       +D P+  
Sbjct: 193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252

Query: 620 ECLYLRASCYHAIGEYREAV 639
             L    + Y   G+   A 
Sbjct: 253 TTLRSLGALYRRQGKLEAAH 272

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 47.1 bits (113), Expect = 7e-06
 Identities = 22/151 (14%), Positives = 42/151 (27%), Gaps = 29/151 (19%)

Query: 512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL--------EAWGHLTQFYQD 563
           +   +   +   GL          A     +A++                   L   Y+D
Sbjct: 1   MGSSHHHHHHSSGL-----VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD 55

Query: 564 LANSEKALECLQQVLYIDKRF--------SKAYHLRGLLLHGLGQHKKAI-------KDL 608
               ++A   L   L I ++         +   +   +L    G++K+A        +  
Sbjct: 56  QNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR 115

Query: 609 SSGLGID-PSNIECLYLRASCYHAIGEYREA 638
              LG   P   + L   A      G+  E 
Sbjct: 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEV 146

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 11/104 (10%), Positives = 25/104 (24%), Gaps = 15/104 (14%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR---------NFLEAWGHLTQFYQDLANSE 568
                L       G+Y+ AE  + + +             +    W H  +  +      
Sbjct: 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRR 229

Query: 569 KALECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKKAIK 606
            +    +   +           +      G L    G+ + A  
Sbjct: 230 DSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 51.5 bits (123), Expect = 8e-08
 Identities = 15/131 (11%), Positives = 42/131 (32%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           L +    + +G++A A+++   +  E     +  + +       ++ E A          
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
                                   ++ L + L   P++ ++  E  +   +      A+E
Sbjct: 70  YQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129

Query: 505 DLSACVKLDKE 515
            L   +K++  
Sbjct: 130 LLWNILKVNLG 140

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 25/143 (17%), Positives = 48/143 (33%)

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
           SN S  E   ++       GE  +A+  +    +   +  D+   +     + K F  A 
Sbjct: 1   SNASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           E L+      ++N        L L          +   + +  + +  E    L   Y  
Sbjct: 61  ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQ 120

Query: 564 LANSEKALECLQQVLYIDKRFSK 586
           +   E+ALE L  +L ++     
Sbjct: 121 VGRDEEALELLWNILKVNLGAQD 143

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 387 RGIAQVNEGKYASAISIFDQILK---EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
                +  GKY  A  +F   L+        P AL   G +    R  + A + F + + 
Sbjct: 8   VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS 67

Query: 444 SNPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA 483
             P+   A     + G ++   G++ EA Q L +     P S 
Sbjct: 68  RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 46.8 bits (110), Expect = 3e-06
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 23/122 (18%)

Query: 383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------------ALIGRGTARAFQRE 430
             LS    Q+  G+Y  A +   + ++     P                G   A A  R 
Sbjct: 13  LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS 72

Query: 431 LEAAISDFTEAIQS-------NPSAGEAWK----RRGQARAALGESVEAIQDLSKALEFE 479
            + A+    +A+         N   G+ W      R  A   LG   EA+ +  K +E  
Sbjct: 73  FDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132

Query: 480 PN 481
             
Sbjct: 133 EE 134

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 17/139 (12%)

Query: 518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDLANSEKAL 571
           S Y    +A  +  + ++A++A+L+  +   N         A+       +DL    +A+
Sbjct: 37  SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96

Query: 572 ECLQQVLYI---DKRFSKA--YHLRGLLLHGLGQHKKAIK------DLSSGLGIDPSNIE 620
           + +++   +   +     A     R   L       KA+        +           E
Sbjct: 97  QYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAE 156

Query: 621 CLYLRASCYHAIGEYREAV 639
            +   +       ++ EA 
Sbjct: 157 LIGKASRLLVRQQKFDEAA 175

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 34/207 (16%), Positives = 69/207 (33%), Gaps = 31/207 (14%)

Query: 395 GKYASAISIFDQ---ILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
             Y SA S + +     K      +A        A+ +E EA         +S   A +A
Sbjct: 30  PDYDSAASEYAKAAVAFKNAKQLEQAK------DAYLQEAEAH-----ANNRSLFHAAKA 78

Query: 452 WKRRGQARAALGESVEAIQDLSKALEF-----EPNSADILHERGIVNFKFKDFNAAVE-- 504
           +++ G     L    EA+Q + KA         P++A +  +R     +  D + AV   
Sbjct: 79  FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLY 138

Query: 505 --DLSACVKLDKENKSAYTY--LGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAW 554
               +     ++  ++A         L    ++ +A  +  K   + +         +  
Sbjct: 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKC 198

Query: 555 GHLTQFYQDLANSEKALECLQQVLYID 581
                     A+   A +C+++   I 
Sbjct: 199 IAQVLVQLHRADYVAAQKCVRESYSIP 225

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 28/207 (13%), Positives = 60/207 (28%), Gaps = 36/207 (17%)

Query: 467 EAIQDLSKALEFEPNS-----------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
           EA + ++KA ++   S           A    +  +     K    A +      +    
Sbjct: 9   EAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHAN 68

Query: 516 NKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQD 563
           N+S      A+   G+ L  +    +A +   KA  +            A     +  + 
Sbjct: 69  NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128

Query: 564 LANSEKALECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIK------DLSSG 611
           L +  KA+   QQ   + +        ++       LL    +  +A         +   
Sbjct: 129 L-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 612 LGIDPSNIECLYLRASCYHAIGEYREA 638
           +   P+  +    +        +Y  A
Sbjct: 188 MENYPTCYKKCIAQVLVQLHRADYVAA 214

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 2/129 (1%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
            +  + E  Y  A+ +     +      E  +            E A       I     
Sbjct: 124 AMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDA-EAVLXTIPLQDQ 182

Query: 448 AGEAWKRRGQARAAL-GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                    Q            IQ L + +   P  A +  +  +   +      A+E L
Sbjct: 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL 242

Query: 507 SACVKLDKE 515
              ++ D  
Sbjct: 243 FGHLRXDLT 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	640
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	100.0
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	100.0
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	100.0
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.97
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.97
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.97
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.97
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.96
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.96
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.95
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.95
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.95
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.95
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.94
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.94
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.94
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.93
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.93
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.92
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.92
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.92
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.92
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.92
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.91
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.91
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.91
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.91
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.9
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.9
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.9
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.9
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.89
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.87
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.87
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.86
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.85
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.83
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.83
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.81
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.81
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.81
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.81
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.8
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.8
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.8
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.79
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.79
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.79
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.78
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.75
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.74
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.73
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.73
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.72
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.72
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.72
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.7
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.69
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.69
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.69
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.68
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.67
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.65
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.63
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.62
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.58
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.58
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.57
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.57
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.56
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.56
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.55
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.55
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.55
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.55
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.54
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.54
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.53
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.53
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.52
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.52
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.5
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.49
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.49
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.48
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.48
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.47
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.47
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.47
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.45
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.45
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.45
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.43
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.42
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.42
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.41
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.41
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.4
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.38
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.38
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.36
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.35
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.35
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.35
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.34
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	99.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.34
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.32
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.32
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.31
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.25
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.14
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.96
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.91
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.9
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.88
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.86
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.85
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.83
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.8
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.71
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.54
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.53
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.5
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.48
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.48
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.39
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.34
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.21
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.2
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.13
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	98.1
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	98.0
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.97
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.84
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.83
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.62
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.42
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.23
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.06
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.03
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.97
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.65
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.47
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	96.33
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.29
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	96.28
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.2
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.16
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.77
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.39
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.38
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.36
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	95.13
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	94.99
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.99
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.9
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.74
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.41
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.01
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	93.41
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.38
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.35
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.26
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	92.11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	92.04
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.88
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	91.66
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	91.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	90.76
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.57
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	85.86

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2.2e-40  Score=338.47  Aligned_cols=381  Identities=16%  Similarity=0.157  Sum_probs=349.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHcccCc-hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562           44 AKLCSLRNWSKAIRILDSLLAQSYE-IQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (640)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~~~-~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A  122 (640)
                      ..+++.|+|++|+..|.+++..+|+ +..+..++.++.+.|++++|+..++++++.+|.++.+++.+|.+|...|++++|
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            4568999999999999999999955 456889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccccc
Q 006562          123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS  202 (640)
Q Consensus       123 ~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (640)
                      +..|++++++.|+.+..+..+..+..                                                      
T Consensus        87 ~~~~~~al~~~p~~~~~~~~l~~~~~------------------------------------------------------  112 (388)
T 1w3b_A           87 IEHYRHALRLKPDFIDGYINLAAALV------------------------------------------------------  112 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHH------------------------------------------------------
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHH------------------------------------------------------
Confidence            99999998888877544322211110                                                      


Q ss_pred             CCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCccc
Q 006562          203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD  282 (640)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (640)
                                                                                                      
T Consensus       113 --------------------------------------------------------------------------------  112 (388)
T 1w3b_A          113 --------------------------------------------------------------------------------  112 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562          283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA  362 (640)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (640)
                                                                         ..++++.+...+.+               
T Consensus       113 ---------------------------------------------------~~g~~~~A~~~~~~---------------  126 (388)
T 1w3b_A          113 ---------------------------------------------------AAGDMEGAVQAYVS---------------  126 (388)
T ss_dssp             ---------------------------------------------------HHSCSSHHHHHHHH---------------
T ss_pred             ---------------------------------------------------HcCCHHHHHHHHHH---------------
Confidence                                                               11223444333322               


Q ss_pred             HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                                +....|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus       127 ----------al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  196 (388)
T 1w3b_A          127 ----------ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV  196 (388)
T ss_dssp             ----------HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             ----------HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                      2334678888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (640)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (640)
                      +.+|++..++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..++++++.+|+++.++..
T Consensus       197 ~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  276 (388)
T 1w3b_A          197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN  276 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      +|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|+++
T Consensus       277 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  356 (388)
T 1w3b_A          277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      +|+..|+++++++|+++.+++.+|.++..+|+
T Consensus       357 ~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999999999999999999998875

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=5.8e-37  Score=313.17  Aligned_cols=267  Identities=21%  Similarity=0.220  Sum_probs=260.8

Q ss_pred             hhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          373 ISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       373 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      +....|.++..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|+++.++
T Consensus        93 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  172 (388)
T 1w3b_A           93 ALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW  172 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            34457888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (640)
                      ..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus       173 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  252 (388)
T 1w3b_A          173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL  252 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      +++|+..|++++..+|.++.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..+++++
T Consensus       253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  332 (388)
T 1w3b_A          253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL  332 (388)
T ss_dssp             HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          613 GIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       613 ~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +..|++..++..+|.++...|++++|+
T Consensus       333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~  359 (388)
T 1w3b_A          333 EVFPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             TSCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999885

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-36  Score=322.48  Aligned_cols=457  Identities=14%  Similarity=0.105  Sum_probs=344.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~  121 (640)
                      .+..++..|+|++|+.+|++++..+|++..+.++|.||.++|++++|+..++++++.+|+++.+++.+|.+|..+|++++
T Consensus        12 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~   91 (514)
T 2gw1_A           12 KGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFAD   91 (514)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHH
Confidence            44567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccc
Q 006562          122 ALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSS  201 (640)
Q Consensus       122 A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (640)
                      |+..|++++++.|.........+....................                                     
T Consensus        92 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------------------  134 (514)
T 2gw1_A           92 AMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDID-------------------------------------  134 (514)
T ss_dssp             HHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC------------------------------------------
T ss_pred             HHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence            9999999999998776554433332222111111110000000                                     


Q ss_pred             cCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcc
Q 006562          202 SQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDF  281 (640)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (640)
                                 .....+.... ..+......    .....                          .....+        
T Consensus       135 -----------~~~~~~~~~~-~~~~~~~~~----~~~~~--------------------------~~~~~~--------  164 (514)
T 2gw1_A          135 -----------TATATPTELS-TQPAKERKD----KQENL--------------------------PSVTSM--------  164 (514)
T ss_dssp             --------------------------------------CC--------------------------CCHHHH--------
T ss_pred             -----------HHHHhhhhcc-CChhhHHHh----hccCC--------------------------chhHHH--------
Confidence                       0000000000 000000000    00000                          000000        


Q ss_pred             cccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHH-----hhhhH
Q 006562          282 DICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFK-----WDMLK  356 (640)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~  356 (640)
                                             ......+...       .    ..  .  ....+..+...+......     .+...
T Consensus       165 -----------------------~~~~~~~~~~-------~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (514)
T 2gw1_A          165 -----------------------ASFFGIFKPE-------L----TF--A--NYDESNEADKELMNGLSNLYKRSPESYD  206 (514)
T ss_dssp             -----------------------HHHHTTSCCC-------C----CC--S--SCCSSCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred             -----------------------HHHHhhcCHH-------H----HH--H--HhcCCcHHHHHHHHHHHHHHhhhhccHH
Confidence                                   0000000000       0    00  0  000011111111111100     11111


Q ss_pred             HHHHHHHhhHHHHHhh----h---hc---cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 006562          357 ETSNEAKRNKKFCVTR----I---SK---SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA  426 (640)
Q Consensus       357 ~~~~~~~~~~~~~~~~----~---~~---~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~  426 (640)
                      .+..    .....+..    +   ..   ..|..+..++.+|.++...|++++|+..|+++++.+|. +.++..+|.++.
T Consensus       207 ~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~  281 (514)
T 2gw1_A          207 KADE----SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMA  281 (514)
T ss_dssp             HHHH----HHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHH
Confidence            1111    11111110    0   00   02666889999999999999999999999999999999 999999999999


Q ss_pred             HccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       427 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  506 (640)
                      ..|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  361 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF  361 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH------HHHHHHHHHHH---hcCHHHHHHHHHHH
Q 006562          507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQD---LANSEKALECLQQV  577 (640)
Q Consensus       507 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~---~g~~~~A~~~~~~a  577 (640)
                      ++++...|.++.++..+|.++...|++++|+..+++++...|.++.      ++..+|.++..   .|++++|+..++++
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888755      99999999999   99999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562          578 LYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (640)
Q Consensus       578 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (640)
                      +...|+++.++..+|.++...|++++|+..|+++++++|+++.++..+...
T Consensus       442 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  492 (514)
T 2gw1_A          442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA  492 (514)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred             HHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999887766544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.8e-35  Score=315.74  Aligned_cols=261  Identities=15%  Similarity=0.127  Sum_probs=147.4

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      |.++..+..+|..+...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+..++..+|.
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  381 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI  381 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      +|...|++++|+..|+++++..|.+..++..++.++...|++++|+..|++++...|.+..++..+|.++...|++++|+
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI------DKRF-SKAYHLRGLLLHGLGQHKKAIKDLSS  610 (640)
Q Consensus       538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~  610 (640)
                      ..|++++...|.++.++..+|.++...|++++|+..|+++++.      +|+. ..++..+|.++...|++++|+..|++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555554      3332 44555555555555555555555555


Q ss_pred             hhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          611 GLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       611 al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      +++.+|+++.++..++.+|...|++++|
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            5555555555555555555555555554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1.6e-34  Score=308.57  Aligned_cols=443  Identities=15%  Similarity=0.075  Sum_probs=326.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 006562           41 IELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRK  119 (640)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~  119 (640)
                      ..+..++..|+|++|+.+|++++..+ .++..++++|.||.++|++++|+..++++++.+|+++.+++.+|.+|..+|++
T Consensus        30 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  109 (537)
T 3fp2_A           30 NRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF  109 (537)
T ss_dssp             HHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence            34446799999999999999999999 56677999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccc
Q 006562          120 EEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (640)
Q Consensus       120 ~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (640)
                      ++|+..|+ ++.+.|..........-.......+...+     ...                                  
T Consensus       110 ~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~----------------------------------  149 (537)
T 3fp2_A          110 TDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVL-----NEN----------------------------------  149 (537)
T ss_dssp             HHHHHHHH-HHC-----------CHHHHHHHHHHHHHH-----HHH----------------------------------
T ss_pred             HHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHH-----HHH----------------------------------
Confidence            99999996 87777766543211110000000010000     000                                  


Q ss_pred             cccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (640)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (640)
                                 +.   ..+......   .+....+..+...+                                      
T Consensus       150 -----------l~---~~~~~~~~~---~~~~~~~~~~~~~~--------------------------------------  174 (537)
T 3fp2_A          150 -----------LS---KDEGRGSQV---LPSNTSLASFFGIF--------------------------------------  174 (537)
T ss_dssp             -----------CC----------CC---CCCHHHHHHHHHTS--------------------------------------
T ss_pred             -----------HH---hCccccccc---cchHhHHHHHHHhc--------------------------------------
Confidence                       00   000000000   00000000000000                                      


Q ss_pred             cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHh----hhh
Q 006562          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKW----DML  355 (640)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~  355 (640)
                                             .....                     ................+.......    ...
T Consensus       175 -----------------------~~~~~---------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  210 (537)
T 3fp2_A          175 -----------------------DSHLE---------------------VSSVNTSSNYDTAYALLSDALQRLYSATDEG  210 (537)
T ss_dssp             -----------------------CHHHH---------------------HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred             -----------------------ChHHH---------------------HHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence                                   00000                     000001111222221121111111    000


Q ss_pred             HHHHHHHHhhHHHHHhhhhccCcccHH-------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 006562          356 KETSNEAKRNKKFCVTRISKSKSISVD-------FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ  428 (640)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  428 (640)
                      ..............+..+....|.++.       .+..+|..+...|++++|+..|++++..+|+ +.++..+|.++...
T Consensus       211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~  289 (537)
T 3fp2_A          211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADK  289 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHh
Confidence            000011122333356667777777654       5788889999999999999999999999999 99999999999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (640)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (640)
                      |++++|+..++++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++
T Consensus       290 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  369 (537)
T 3fp2_A          290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE  369 (537)
T ss_dssp             SCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH------HHHHHHHHHHHh----------cCHHHHHH
Q 006562          509 CVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE------AWGHLTQFYQDL----------ANSEKALE  572 (640)
Q Consensus       509 al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~  572 (640)
                      ++...|+++.++..+|.++...|++++|+..|++++...|.+..      .+..+|.++...          |++++|+.
T Consensus       370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~  449 (537)
T 3fp2_A          370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK  449 (537)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence            99999999999999999999999999999999999998876543      356778899999          99999999


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          573 CLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      +|+++++.+|+++.++..+|.++...|++++|+..|++++++.|+..+...
T Consensus       450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            999999999999999999999999999999999999999999999886543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=6.9e-34  Score=296.51  Aligned_cols=364  Identities=15%  Similarity=0.138  Sum_probs=322.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562           44 AKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (640)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A  122 (640)
                      ..++..|+|++|+.+|++++..+ .++..++.+|.+|..+|++++|+..++++++.+|++..+++.+|.+|..+|++++|
T Consensus        34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  113 (450)
T 2y4t_A           34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA  113 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            35689999999999999999998 56677999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCh---HHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccc
Q 006562          123 LSVWEKGYEHALHQS---ADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICD  199 (640)
Q Consensus       123 ~~~~~~al~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (640)
                      +..|++++++.|..+   ..+..+..+                                                     
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------------------------------------  140 (450)
T 2y4t_A          114 EDDFKKVLKSNPSENEEKEAQSQLIKS-----------------------------------------------------  140 (450)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHHHH-----------------------------------------------------
T ss_pred             HHHHHHHHhcCCCChhhHHHHHHHHHH-----------------------------------------------------
Confidence            999999976665432   111000000                                                     


Q ss_pred             cccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCC
Q 006562          200 SSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSD  279 (640)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (640)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (450)
T 2y4t_A          141 --------------------------------------------------------------------------------  140 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHH
Q 006562          280 DFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETS  359 (640)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  359 (640)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (450)
T 2y4t_A          141 --------------------------------------------------------------------------------  140 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q 006562          360 NEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT  439 (640)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  439 (640)
                                         .....++.+|..+...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+
T Consensus       141 -------------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  201 (450)
T 2y4t_A          141 -------------------DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK  201 (450)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                               0023345678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHH
Q 006562          440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER------------GIVNFKFKDFNAAVEDLS  507 (640)
Q Consensus       440 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l------------a~~~~~~~~~~~A~~~~~  507 (640)
                      ++++.+|.++.++..+|.++...|++++|+..|++++...|++...+..+            |.++...|++++|+..|+
T Consensus       202 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  281 (450)
T 2y4t_A          202 AASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE  281 (450)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998887666            999999999999999999


Q ss_pred             HHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          508 ACVKLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       508 ~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      +++...|.++    ..+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+
T Consensus       282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~  361 (450)
T 2y4t_A          282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN  361 (450)
T ss_dssp             HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            9999999985    478899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-hhccCCCCH----------HHHHHHHHHHHHcCCc
Q 006562          584 FSKAYHLRGLL------------LHGLG-----QHKKAIKDLSS-GLGIDPSNI----------ECLYLRASCYHAIGEY  635 (640)
Q Consensus       584 ~~~~~~~la~~------------~~~~g-----~~~~A~~~~~~-al~~~p~~~----------~~~~~la~~~~~~g~~  635 (640)
                      ++.++..++.+            |...|     +.+++.+.|++ +++..|++.          ..+..++.+|..+|+.
T Consensus       362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~  441 (450)
T 2y4t_A          362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP  441 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred             hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence            99999999954            44555     56778999986 788877631          3567789999999998


Q ss_pred             cccc
Q 006562          636 REAV  639 (640)
Q Consensus       636 ~~Al  639 (640)
                      +.+.
T Consensus       442 ~~r~  445 (450)
T 2y4t_A          442 EMRK  445 (450)
T ss_dssp             GGC-
T ss_pred             HHHH
Confidence            7653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=5.2e-33  Score=280.22  Aligned_cols=214  Identities=14%  Similarity=0.174  Sum_probs=175.7

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Q 006562          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN  500 (640)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  500 (640)
                      +|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus       126 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  205 (359)
T 3ieg_A          126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHE  205 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            36677777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHhCCCcHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHccCcccHH----HHHHHHHHHHHh
Q 006562          501 AAVEDLSACVKLDKENKSAYT------------YLGLALSSIGEYKKAEEAHLKAIQLDRNFLE----AWGHLTQFYQDL  564 (640)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~------------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~~  564 (640)
                      +|+..+++++...|++..++.            .+|.++...|++++|+..+++++...|.++.    ++..+|.++...
T Consensus       206 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  285 (359)
T 3ieg_A          206 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD  285 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc
Confidence            777777777777777665543            4488899999999999999999999988764    466789999999


Q ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+++
T Consensus       286 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  355 (359)
T 3ieg_A          286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ  355 (359)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=100.00  E-value=7.6e-33  Score=288.58  Aligned_cols=338  Identities=17%  Similarity=0.181  Sum_probs=299.1

Q ss_pred             HHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562           52 WSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (640)
Q Consensus        52 y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al  130 (640)
                      ...+...+.+++..+ .+...+..+|.++++.|++++|+..++++++.+|+++.+++.+|.+|..+|++++|+..|++++
T Consensus         8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A            8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            345677788888888 4456689999999999999999999999999999999999999999999999999999999994


Q ss_pred             hhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCccccccCCcccccc
Q 006562          131 EHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRDVSET  210 (640)
Q Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (640)
                      ++.|.                                                                           
T Consensus        88 ~~~p~---------------------------------------------------------------------------   92 (450)
T 2y4t_A           88 QLKMD---------------------------------------------------------------------------   92 (450)
T ss_dssp             HHCTT---------------------------------------------------------------------------
T ss_pred             hcCCC---------------------------------------------------------------------------
Confidence            43221                                                                           


Q ss_pred             ccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCcccccCCCCCc
Q 006562          211 CSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFDICNGPIDK  290 (640)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (640)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (450)
T 2y4t_A           93 --------------------------------------------------------------------------------   92 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHHHhhHHHHH
Q 006562          291 ASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCV  370 (640)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (640)
                                                                                                      
T Consensus        93 --------------------------------------------------------------------------------   92 (450)
T 2y4t_A           93 --------------------------------------------------------------------------------   92 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHccCHHHHH
Q 006562          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGR------------GTARAFQRELEAAI  435 (640)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~l------------a~~~~~~g~~~~A~  435 (640)
                               ++..+..+|.++...|++++|+..|+++++.+|.++   .++..+            |.++...|++++|+
T Consensus        93 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A           93 ---------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence                     144566789999999999999999999999999988   776555            66799999999999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006562          436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (640)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  515 (640)
                      ..|++++...|.+..++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~  243 (450)
T 2y4t_A          164 AFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD  243 (450)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHccCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 006562          516 NKSAYTYL------------GLALSSIGEYKKAEEAHLKAIQLDRNFL----EAWGHLTQFYQDLANSEKALECLQQVLY  579 (640)
Q Consensus       516 ~~~~~~~l------------a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~  579 (640)
                      +...+..+            |.++...|++++|+..|++++...|.++    ..+..+|.++...|++++|+..+++++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  323 (450)
T 2y4t_A          244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ  323 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            98887666            9999999999999999999999999984    4788999999999999999999999999


Q ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          580 IDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      ..|+++.++..+|.++...|++++|+..|+++++++|+++.++..++.+....+
T Consensus       324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  377 (450)
T 2y4t_A          324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK  377 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999997655543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.4e-33  Score=303.64  Aligned_cols=259  Identities=17%  Similarity=0.181  Sum_probs=247.9

Q ss_pred             hhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (640)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (640)
                      .+....|.+...+..++.++...|++++|+..+++++...|.++.++..+|.+|...|++++|+..|+++++..|.+..+
T Consensus       330 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  409 (597)
T 2xpi_A          330 KILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA  409 (597)
T ss_dssp             HHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence            33344567788899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (640)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  531 (640)
                      |..++.++...|++++|+..|++++...|.+..++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|
T Consensus       410 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHcc------Cccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH
Q 006562          532 EYKKAEEAHLKAIQL------DRNF-LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (640)
Q Consensus       532 ~~~~A~~~~~~a~~~------~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (640)
                      ++++|+..|++++..      +|.. ..+|..+|.++...|++++|+..++++++..|+++.++..+|.+|...|++++|
T Consensus       490 ~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  569 (597)
T 2xpi_A          490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLA  569 (597)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            999999999999988      5654 789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562          605 IKDLSSGLGIDPSNIECLYLRASCYH  630 (640)
Q Consensus       605 ~~~~~~al~~~p~~~~~~~~la~~~~  630 (640)
                      ...|+++++++|+++.++..++.+|.
T Consensus       570 ~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          570 ITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            99999999999999999999998874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=100.00  E-value=1e-31  Score=270.83  Aligned_cols=325  Identities=14%  Similarity=0.116  Sum_probs=291.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 006562           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEE  121 (640)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~  121 (640)
                      +..++..|+|++|+.+|++++..+ .++..++++|.++..+|++++|+..++++++.+|++..+++.+|.+|..+|++++
T Consensus        10 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   89 (359)
T 3ieg_A           10 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDE   89 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHH
Confidence            345689999999999999999999 5567799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcc---CChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcc
Q 006562          122 ALSVWEKGYEHAL---HQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDIC  198 (640)
Q Consensus       122 A~~~~~~al~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (640)
                      |+..|++++++.|   ..+..+..              +                                         
T Consensus        90 A~~~~~~~~~~~~~~~~~~~~~~~--------------l-----------------------------------------  114 (359)
T 3ieg_A           90 AEDDFKKVLKSNPSEQEEKEAESQ--------------L-----------------------------------------  114 (359)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHHHH--------------H-----------------------------------------
T ss_pred             HHHHHHHHHhcCCcccChHHHHHH--------------H-----------------------------------------
Confidence            9999999976655   22111100              0                                         


Q ss_pred             ccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccC
Q 006562          199 DSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSS  278 (640)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (640)
                                                                                                      
T Consensus       115 --------------------------------------------------------------------------------  114 (359)
T 3ieg_A          115 --------------------------------------------------------------------------------  114 (359)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHH
Q 006562          279 DDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKET  358 (640)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  358 (640)
                                                                                         ..+.         
T Consensus       115 -------------------------------------------------------------------~~~~---------  118 (359)
T 3ieg_A          115 -------------------------------------------------------------------VKAD---------  118 (359)
T ss_dssp             -------------------------------------------------------------------HHHH---------
T ss_pred             -------------------------------------------------------------------HHHH---------
Confidence                                                                               0000         


Q ss_pred             HHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 006562          359 SNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDF  438 (640)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  438 (640)
                                           ....+..+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+
T Consensus       119 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~  177 (359)
T 3ieg_A          119 ---------------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL  177 (359)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence                                 02235567889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHhcCCHHHHHHHH
Q 006562          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH------------ERGIVNFKFKDFNAAVEDL  506 (640)
Q Consensus       439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~  506 (640)
                      +++++..|.++.++..+|.++...|++++|+..++++++..|.+..++.            .+|.++...|++++|+..+
T Consensus       178 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  257 (359)
T 3ieg_A          178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY  257 (359)
T ss_dssp             HHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999987654            3488899999999999999


Q ss_pred             HHHHHhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562          507 SACVKLDKENKS----AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (640)
Q Consensus       507 ~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (640)
                      ++++...|+++.    ++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            999999999874    4667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcC
Q 006562          583 RFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       583 ~~~~~~~~la~~~~~~g  599 (640)
                      +++.++..++.+....+
T Consensus       338 ~~~~~~~~l~~~~~~~~  354 (359)
T 3ieg_A          338 NDQQIREGLEKAQRLLK  354 (359)
T ss_dssp             TCHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH
Confidence            99999999988876544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.7e-33  Score=295.39  Aligned_cols=261  Identities=19%  Similarity=0.213  Sum_probs=249.8

Q ss_pred             cccHHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----h--C-------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 006562          378 SISVDFRLSRGIAQVN---EGKYASAISIFDQILK-----E--D-------PMYPEALIGRGTARAFQRELEAAISDFTE  440 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~-----~--~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~  440 (640)
                      |.++..++..|..++.   .|++++|+..|+++++     .  +       |.++.++..+|.++...|++++|+..+++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  262 (514)
T 2gw1_A          183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK  262 (514)
T ss_dssp             SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5568899999999887   8999999999999999     5  4       44568899999999999999999999999


Q ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (640)
Q Consensus       441 al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  520 (640)
                      ++...|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++
T Consensus       263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  341 (514)
T 2gw1_A          263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY  341 (514)
T ss_dssp             HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred             HHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH------HHHHHHHH
Q 006562          521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK------AYHLRGLL  594 (640)
Q Consensus       521 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~  594 (640)
                      ..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.      ++..+|.+
T Consensus       342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~  421 (514)
T 2gw1_A          342 IQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL  421 (514)
T ss_dssp             HHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999888755      99999999


Q ss_pred             HHh---cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          595 LHG---LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       595 ~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +..   .|++++|+..|++++..+|+++.++..+|.++...|++++|+
T Consensus       422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  469 (514)
T 2gw1_A          422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI  469 (514)
T ss_dssp             HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence            999   999999999999999999999999999999999999999885

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=100.00  E-value=1e-32  Score=294.58  Aligned_cols=246  Identities=18%  Similarity=0.203  Sum_probs=231.1

Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          393 NEGKYASAISIFDQILKEDPMYPE-------ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (640)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  465 (640)
                      ..|++++|+..|+++++.+|+++.       ++..+|.++...|++++|+..+++++..+|. ..++..+|.++...|++
T Consensus       214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~  292 (537)
T 3fp2_A          214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENS  292 (537)
T ss_dssp             HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCH
Confidence            346899999999999999999865       5778889999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++.
T Consensus       293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  372 (537)
T 3fp2_A          293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL  372 (537)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHhc----------CCHHHHHHHHH
Q 006562          546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK------AYHLRGLLLHGL----------GQHKKAIKDLS  609 (640)
Q Consensus       546 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~la~~~~~~----------g~~~~A~~~~~  609 (640)
                      ..|.++.++..+|.++...|++++|+..|++++...|.+..      .+..+|.++...          |++++|+..|+
T Consensus       373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~  452 (537)
T 3fp2_A          373 KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT  452 (537)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH
Confidence            99999999999999999999999999999999998875443      466778999999          99999999999


Q ss_pred             HhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          610 SGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       610 ~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++++.+|++..++..+|.++..+|++++|+
T Consensus       453 ~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~  482 (537)
T 3fp2_A          453 KACELDPRSEQAKIGLAQLKLQMEKIDEAI  482 (537)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhccHHHHH
Confidence            999999999999999999999999999885

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-30  Score=273.18  Aligned_cols=366  Identities=13%  Similarity=0.027  Sum_probs=273.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHccc---------C-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcC--------CCchHHH
Q 006562           45 KLCSLRNWSKAIRILDSLLAQS---------Y-EIQDICNRAFCYSQLELHKHVIRDCDKALQLD--------PTLLQAY  106 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~---------~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~--------P~~~~a~  106 (640)
                      -++..|+|++|+.+|++|+++.         + ....|.|+|.+|..+|++++|+..+++++++.        |..+.++
T Consensus        60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~  139 (472)
T 4g1t_A           60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD  139 (472)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence            4478999999999999998762         2 22348899999999999999999999999874        4567889


Q ss_pred             HHHHHHHHHcC--CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCc
Q 006562          107 ILKGCAFSALG--RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDK  184 (640)
Q Consensus       107 ~~~g~~y~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (640)
                      ..+|.++..+|  ++++|+.+|++|+++.|+.+..+..+..+.-...                                 
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~---------------------------------  186 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLD---------------------------------  186 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH---------------------------------
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------------------------------
Confidence            99998888765  6999999999999999988765433221110000                                 


Q ss_pred             chhhhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccc
Q 006562          185 MSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKST  264 (640)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (640)
                                                                                                      
T Consensus       187 --------------------------------------------------------------------------------  186 (472)
T 4g1t_A          187 --------------------------------------------------------------------------------  186 (472)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHH
Q 006562          265 HASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTES  344 (640)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  344 (640)
                                                                                           ..++...++..
T Consensus       187 ---------------------------------------------------------------------~~~~~~~al~~  197 (472)
T 4g1t_A          187 ---------------------------------------------------------------------NWPPSQNAIDP  197 (472)
T ss_dssp             ---------------------------------------------------------------------HSCCCCCTHHH
T ss_pred             ---------------------------------------------------------------------CchHHHHHHHH
Confidence                                                                                 00112222222


Q ss_pred             HHhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006562          345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIG  420 (640)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~  420 (640)
                      +                         .+++..+|.++..+..+|..+..    .|++++|+..+++++..+|.++.++..
T Consensus       198 ~-------------------------~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~  252 (472)
T 4g1t_A          198 L-------------------------RQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRS  252 (472)
T ss_dssp             H-------------------------HHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             H-------------------------HHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            2                         22233467777777777766554    467889999999999999999999999


Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhCCC
Q 006562          421 RGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-------------------GESVEAIQDLSKALEFEPN  481 (640)
Q Consensus       421 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------~~~~~A~~~~~~al~~~p~  481 (640)
                      +|.++...|++++|+..++++++.+|+++.++..+|.+|...                   +.+++|+..+++++..+|.
T Consensus       253 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~  332 (472)
T 4g1t_A          253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN  332 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc
Confidence            999999999999999999999999999999999999988643                   3468899999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHccCcccHHHHHHH
Q 006562          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS---AYTYLGLA-LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL  557 (640)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l  557 (640)
                      +..++..+|.++...|++++|+.+|++++...|++..   ++..+|.+ +...|++++|+..|.+++.+.|.+.....  
T Consensus       333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~--  410 (472)
T 4g1t_A          333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK--  410 (472)
T ss_dssp             TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH--
T ss_pred             hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH--
Confidence            9999999999999999999999999999999887653   45566654 45689999999999999999998765332  


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562          558 TQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (640)
                              ....+..++++++..+|.++.++..+|.+|...|++++|+++|++++++.|.++.+...+|.
T Consensus       411 --------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G~  472 (472)
T 4g1t_A          411 --------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNGE  472 (472)
T ss_dssp             --------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------------
T ss_pred             --------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCCC
Confidence                    23455677889999999999999999999999999999999999999999999988877763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.9e-30  Score=256.02  Aligned_cols=249  Identities=17%  Similarity=0.180  Sum_probs=184.9

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (640)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  465 (640)
                      ++.++...|++++|+..++++++.+|.++.++..+|.++...| ++++|+.+|++++..+|.++.++..+|.++...|++
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  141 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEH  141 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCH
Confidence            4455566666777777777777777777777777777777777 677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.
T Consensus       142 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          142 DQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            77777777777777776667777777777777777777777777777777777777777777777777777777777776


Q ss_pred             cC---------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          546 LD---------RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       546 ~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      ..         |..+.++..+|.++...|++++|+.+++++++..|+++.++..+|.++...|++++|+.+|+++++++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  301 (330)
T 3hym_B          222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR  301 (330)
T ss_dssp             HHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred             HhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence            64         555677888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHH-HHcCCc
Q 006562          617 SNIECLYLRASCY-HAIGEY  635 (640)
Q Consensus       617 ~~~~~~~~la~~~-~~~g~~  635 (640)
                      +++.++..++.++ ...|+.
T Consensus       302 ~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          302 DDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             CCHHHHHHHHHHHHTTTTC-
T ss_pred             CchHHHHHHHHHHHHHhCch
Confidence            8888888888877 455543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=264.84  Aligned_cols=262  Identities=17%  Similarity=0.118  Sum_probs=182.6

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHH
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVN---EGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEA  441 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  441 (640)
                      ++.++...+|.++.++..+|.+++.   .+++++|+..|+++++.+|+++.++..+|..+..    .|++++|+.+++++
T Consensus       160 ~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~a  239 (472)
T 4g1t_A          160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA  239 (472)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5566666777777777777766443   4566777777777777777777777777765544    35666777777777


Q ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-------------------CCHHHH
Q 006562          442 IQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-------------------KDFNAA  502 (640)
Q Consensus       442 l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------~~~~~A  502 (640)
                      +..+|.++.++..+|.+|...|++++|+..++++++..|+++.++..+|.+|...                   +.++.|
T Consensus       240 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A  319 (472)
T 4g1t_A          240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHA  319 (472)
T ss_dssp             HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHH
T ss_pred             HHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHH
Confidence            7777777777777777777777777777777777777777777777777776542                   235667


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH---HHHHHHHH-HHHhcCHHHHHHHHHHHH
Q 006562          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE---AWGHLTQF-YQDLANSEKALECLQQVL  578 (640)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~---~~~~la~~-~~~~g~~~~A~~~~~~al  578 (640)
                      +..+++++..+|.+..++..+|.++...|++++|+.+|++++...|....   .+..+|.+ +...|++++|+..|++++
T Consensus       320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777665432   34455544 345677777777777777


Q ss_pred             HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccccC
Q 006562          579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAVI  640 (640)
Q Consensus       579 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al~  640 (640)
                      .+.|++......          ...+...+++++..+|+++.++..+|.+|..+|++++|+.
T Consensus       400 ~i~~~~~~~~~~----------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~  451 (472)
T 4g1t_A          400 KINQKSREKEKM----------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE  451 (472)
T ss_dssp             HSCCCCHHHHHH----------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred             hcCcccHHHHHH----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            777766443222          2344556667777889999999999999999999999873

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=4.6e-30  Score=259.92  Aligned_cols=230  Identities=17%  Similarity=0.169  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH---------
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK---------  453 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---------  453 (640)
                      .++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+...+.         
T Consensus       100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (368)
T 1fch_A          100 AWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA  179 (368)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhh
Confidence            34445555555555555555555555555555555555555555555666666666655555555444332         


Q ss_pred             -------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          454 -------RRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (640)
Q Consensus       454 -------~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (640)
                             .++.++ ..|++++|+..+++++...|.  ++.++..+|.++...|++++|+..+++++..+|+++.++..+|
T Consensus       180 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~  258 (368)
T 1fch_A          180 GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG  258 (368)
T ss_dssp             ------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence                   355555 778888888888888888887  6778888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-----------hHHHHHHHH
Q 006562          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-----------SKAYHLRGL  593 (640)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~~~la~  593 (640)
                      .++...|++++|+..|++++...|.++.++..+|.++...|++++|+.+|++++...|++           ..+|..+|.
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~  338 (368)
T 1fch_A          259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL  338 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888877766           778888888


Q ss_pred             HHHhcCCHHHHHHHHHHhhc
Q 006562          594 LLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~  613 (640)
                      ++..+|++++|...+.++++
T Consensus       339 ~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          339 ALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             HHHHHTCGGGHHHHHTTCHH
T ss_pred             HHHHhCChHhHHHhHHHHHH
Confidence            88888888888888776664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.97  E-value=3.2e-29  Score=249.41  Aligned_cols=266  Identities=14%  Similarity=0.086  Sum_probs=254.4

Q ss_pred             hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (640)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (640)
                      ....+.++..++.+|..++..|++++|+..|+++++.+|.++.++..++.++...|++++|+..++++++.+|.++.++.
T Consensus        15 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   94 (330)
T 3hym_B           15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF   94 (330)
T ss_dssp             -----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence            44566778889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          454 RRGQARAALG-ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (640)
Q Consensus       454 ~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (640)
                      .+|.++...| ++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.+...+..+|.++...|+
T Consensus        95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           95 AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence            9999999999 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHhcCCHHH
Q 006562          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID---------KRFSKAYHLRGLLLHGLGQHKK  603 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~~la~~~~~~g~~~~  603 (640)
                      +++|+..+++++...|.++.++..+|.++...|++++|+.++++++...         |..+.++..+|.++...|++++
T Consensus       175 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            9999999999999999999999999999999999999999999999986         6678899999999999999999


Q ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |+.+++++++.+|++..++..+|.++..+|++++|+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~  290 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV  290 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH
Confidence            999999999999999999999999999999999885

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.97  E-value=2.1e-29  Score=254.76  Aligned_cols=262  Identities=16%  Similarity=0.171  Sum_probs=241.5

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .+.++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.++.++..+|
T Consensus        61 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (365)
T 4eqf_A           61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA  140 (365)
T ss_dssp             TTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            33456679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHE----------RGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTYLG  524 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----------la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la  524 (640)
                      .++...|++++|+..+++++...|.+...+..          +|.++...|++++|+..+++++..+|.  ++.++..+|
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999999999876655544          499999999999999999999999999  899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH
Q 006562          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA  604 (640)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  604 (640)
                      .++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCC------------CHHHHHHHHHHHHHcCCcccc
Q 006562          605 IKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       605 ~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A  638 (640)
                      +.+|++++++.|+            +..+|..++.++..+|+.+.|
T Consensus       301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  346 (365)
T 4eqf_A          301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF  346 (365)
T ss_dssp             HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence            9999999999877            357899999999999998765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.97  E-value=5.5e-29  Score=249.44  Aligned_cols=258  Identities=14%  Similarity=0.085  Sum_probs=244.3

Q ss_pred             hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCcHHHH
Q 006562          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE-LEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      +..+|....++..+|.++...|++++|+..|++++..+|++..+|+.+|.++...|+ +++|+..|++++..+|++..+|
T Consensus        90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A           90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            345677789999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cC
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IG  531 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g  531 (640)
                      +.+|.++..+|++++|+..|++++.++|++..+|+.+|.++...|++++|+.+++++++++|++..+|+.+|.++.. .|
T Consensus       170 ~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~  249 (382)
T 2h6f_A          170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTG  249 (382)
T ss_dssp             HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 55


Q ss_pred             CHHHH-----HHHHHHHHccCcccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC-----
Q 006562          532 EYKKA-----EEAHLKAIQLDRNFLEAWGHLTQFYQDLA--NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG-----  599 (640)
Q Consensus       532 ~~~~A-----~~~~~~a~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-----  599 (640)
                      .+++|     +.+|.+++.++|++..+|.+++.++...|  ++++|+..+.++ +.+|+++.++..+|.+|..+|     
T Consensus       250 ~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~  328 (382)
T 2h6f_A          250 YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD  328 (382)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred             cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence            55777     59999999999999999999999999988  699999999998 899999999999999999975     


Q ss_pred             ----CHHHHHHHHHHh-hccCCCCHHHHHHHHHHHHHc
Q 006562          600 ----QHKKAIKDLSSG-LGIDPSNIECLYLRASCYHAI  632 (640)
Q Consensus       600 ----~~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~~  632 (640)
                          .+++|+.+|+++ ++++|.....|..++..+..+
T Consensus       329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence                359999999999 999999999999999888654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.97  E-value=1.1e-28  Score=249.84  Aligned_cols=258  Identities=20%  Similarity=0.239  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|+++++.+|.++.++..+|.++.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  143 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT  143 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILH----------------ERGIVNFKFKDFNAAVEDLSACVKLDKE--NKSAYTY  522 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~----------------~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~  522 (640)
                      ..|++++|+..+++++...|.+...+.                .++.++ ..|++++|+..+++++...|.  ++.++..
T Consensus       144 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~  222 (368)
T 1fch_A          144 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCG  222 (368)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence            999999999999999999998876654                466666 999999999999999999999  8999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      +|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|+++
T Consensus       223 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~  302 (368)
T 1fch_A          223 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  302 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCC-----------HHHHHHHHHHHHHcCCccccc
Q 006562          603 KAIKDLSSGLGIDPSN-----------IECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +|+.+|++++.+.|++           ..+|..+|.++..+|++++|.
T Consensus       303 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          303 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            9999999999999888           899999999999999999874

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.96  E-value=3.5e-28  Score=241.54  Aligned_cols=261  Identities=13%  Similarity=0.132  Sum_probs=246.9

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (640)
                      .++..++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|.+..++..+|.+
T Consensus        19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHER--------------GI-VNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  523 (640)
                      +...|++++|+..+++++...|.+...+..+              +. ++...|++++|+..+++++...|.++.++..+
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  178 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL  178 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            9999999999999999999999988777666              66 68899999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH
Q 006562          524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK  603 (640)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  603 (640)
                      |.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCCC------------CHHHHHHHHHHHHHcCCccccc
Q 006562          604 AIKDLSSGLGIDPS------------NIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       604 A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |+..+++++...|+            +..++..++.++..+|++++|.
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            99999999999999            7899999999999999999874

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.96  E-value=1.5e-27  Score=241.13  Aligned_cols=169  Identities=18%  Similarity=0.229  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH----------HHHHHHccCHHHHHHHHHHHHHhCCC--c
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR----------GTARAFQRELEAAISDFTEAIQSNPS--A  448 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l----------a~~~~~~g~~~~A~~~~~~al~~~p~--~  448 (640)
                      +..+..+|.++...|++++|+..|+++++..|.+..++..+          |.++...|++++|+.+++++++..|.  +
T Consensus       133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  212 (365)
T 4eqf_A          133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID  212 (365)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence            44566778888999999999999999999888766555444          66666666666666666666666666  5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      +.++..+|.++...|++++|+..|+++++..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++.
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  292 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCI  292 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHccCcc
Q 006562          529 SIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      ..|++++|+..|++++...|.
T Consensus       293 ~~g~~~~A~~~~~~al~~~~~  313 (365)
T 4eqf_A          293 NLGAYREAVSNFLTALSLQRK  313 (365)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHC
T ss_pred             HCCCHHHHHHHHHHHHHhCcc
Confidence            666666666666666665554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.95  E-value=3.9e-27  Score=227.43  Aligned_cols=253  Identities=15%  Similarity=0.143  Sum_probs=228.4

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----HHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----GEAWKRR  455 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~l  455 (640)
                      +++.++..|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++ .|.+    ..++..+
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY   80 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999999999999 4443    4468999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  535 (640)
                      |.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|......+++++
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999955555679999


Q ss_pred             HHHHHHHHHccCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhC---CC-----ChHHHHHHHHHHHhcCCHHHH
Q 006562          536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYID---KR-----FSKAYHLRGLLLHGLGQHKKA  604 (640)
Q Consensus       536 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~---~~-----~~~~~~~la~~~~~~g~~~~A  604 (640)
                      |+..|++++..+|+++.++..+|.++...|+   +++|+..++++++..   |+     ...++..+|.++...|++++|
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999   999999999999876   44     236889999999999999999


Q ss_pred             HHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          605 IKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       605 ~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      +.+|+++++++|+++.++-.++.+....+
T Consensus       241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          241 DAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            99999999999999999998888766544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.95  E-value=7.4e-27  Score=234.01  Aligned_cols=181  Identities=12%  Similarity=0.050  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +.+|+.+|.++...|++++|+..|+++++++|++..+|+.+|.++...|++++|+.+|+++++.+|.+..+|..+|.++.
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             H-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-
Q 006562          461 A-LGESVEA-----IQDLSKALEFEPNSADILHERGIVNFKFK--DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG-  531 (640)
Q Consensus       461 ~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-  531 (640)
                      . .|.+++|     +.+|++++.++|++..+|..++.++...|  ++++|+..+.++ +.+|+++.++..+|.++..+| 
T Consensus       246 ~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence            5 3332444     34555555555555555555555555544  345555555444 444555555555555554442 


Q ss_pred             --------CHHHHHHHHHHH-HccCcccHHHHHHHHHHHH
Q 006562          532 --------EYKKAEEAHLKA-IQLDRNFLEAWGHLTQFYQ  562 (640)
Q Consensus       532 --------~~~~A~~~~~~a-~~~~~~~~~~~~~la~~~~  562 (640)
                              .+++|+.+|+++ ++.+|.....|..++..+.
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence                    124455555554 4555555555544444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.95  E-value=1.5e-26  Score=229.62  Aligned_cols=197  Identities=14%  Similarity=0.181  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHccCHHHHHHHHHHHHHhCC
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR--------------GT-ARAFQRELEAAISDFTEAIQSNP  446 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--------------a~-~~~~~g~~~~A~~~~~~al~~~p  446 (640)
                      ..+..+|.++...|++++|+..+++++..+|.+...+..+              +. ++...|++++|+..++++++..|
T Consensus        90 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  169 (327)
T 3cv0_A           90 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP  169 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC
Confidence            3455667777788888888888888888877766655554              33 34455555555555555555555


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (640)
Q Consensus       447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (640)
                      .++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..++++++..|.++.++..+|.+
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHcCCHHHHHHHHHHHHccCcc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562          527 LSSIGEYKKAEEAHLKAIQLDRN------------FLEAWGHLTQFYQDLANSEKALECLQQVL  578 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (640)
                      +...|++++|+..+++++...|.            .+.++..+|.++...|++++|...+++++
T Consensus       250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            55555555555555555555544            44445555555555555555554444443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-26  Score=220.90  Aligned_cols=241  Identities=17%  Similarity=0.161  Sum_probs=230.1

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAW  452 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~  452 (640)
                      .+..+..+|..++..|++++|+..|+++++.+ .++.++..+|.++...|++++|+..++++++..|.+       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            47789999999999999999999999999999 889999999999999999999999999999998876       7899


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (640)
                      ..+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++..+|.++.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999986        5677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      +++|+..+++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.+|++++
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC------CCCHHHHHHHHHHH
Q 006562          613 GID------PSNIECLYLRASCY  629 (640)
Q Consensus       613 ~~~------p~~~~~~~~la~~~  629 (640)
                      +++      |++..++..++.++
T Consensus       235 ~~~~~~~~~p~~~~~~~~l~~~~  257 (258)
T 3uq3_A          235 TKDAEVNNGSSAREIDQLYYKAS  257 (258)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHHTT
T ss_pred             HhChhhcCCCchHHHHHHHHHhh
Confidence            999      99888888877653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.95  E-value=7e-24  Score=222.95  Aligned_cols=357  Identities=15%  Similarity=0.026  Sum_probs=293.0

Q ss_pred             HHHHHHHHHH-h----cCCHHHHHHHHHHHHcccCchhHHHhHHHHHHh----hhcHHHHHHHHHHHHHcCCCchHHHHH
Q 006562           38 TARIELAKLC-S----LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQ----LELHKHVIRDCDKALQLDPTLLQAYIL  108 (640)
Q Consensus        38 ~~~~~~~~~~-~----~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~----~g~~~~Ai~~~~~al~~~P~~~~a~~~  108 (640)
                      .....++.+| .    .+|+++|+.+|+++++. .++.+++.+|.+|..    .+++++|+..++++++.  .++.+++.
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~  116 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQN  116 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            3345566555 4    68999999999999987 456788999999999    99999999999999875  57899999


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCc
Q 006562          109 KGCAFSA----LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDK  184 (640)
Q Consensus       109 ~g~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (640)
                      +|.+|..    .+++++|+..|+++.+..  .+.....+..+.               ..+                   
T Consensus       117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y---------------~~g-------------------  160 (490)
T 2xm6_A          117 LGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAY---------------FEG-------------------  160 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH---------------HHT-------------------
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH---------------HcC-------------------
Confidence            9999999    899999999999995532  222111110000               000                   


Q ss_pred             chhhhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccc
Q 006562          185 MSETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKST  264 (640)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (640)
                                                                            .+                        
T Consensus       161 ------------------------------------------------------~g------------------------  162 (490)
T 2xm6_A          161 ------------------------------------------------------DG------------------------  162 (490)
T ss_dssp             ------------------------------------------------------SS------------------------
T ss_pred             ------------------------------------------------------CC------------------------
Confidence                                                                  00                        


Q ss_pred             cccccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHH
Q 006562          265 HASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTES  344 (640)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  344 (640)
                                                                                           ..+++..++..
T Consensus       163 ---------------------------------------------------------------------~~~d~~~A~~~  173 (490)
T 2xm6_A          163 ---------------------------------------------------------------------VTRDYVMAREW  173 (490)
T ss_dssp             ---------------------------------------------------------------------SCCCHHHHHHH
T ss_pred             ---------------------------------------------------------------------CCCCHHHHHHH
Confidence                                                                                 00112233322


Q ss_pred             HHhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHH
Q 006562          345 RSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIG  420 (640)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~  420 (640)
                      +.+                         ...  ..++..++.+|.++..    .+++++|+.+|+++.+.  .++.+++.
T Consensus       174 ~~~-------------------------a~~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~  224 (490)
T 2xm6_A          174 YSK-------------------------AAE--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLH  224 (490)
T ss_dssp             HHH-------------------------HHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             HHH-------------------------HHH--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHH
Confidence            222                         111  2468899999999998    89999999999999875  46899999


Q ss_pred             HHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          421 RGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       421 la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      +|.+|..    .+++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+
T Consensus       225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~  300 (490)
T 2xm6_A          225 LADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHL  300 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHH
Confidence            9999997    89999999999999875  568899999999998    89999999999999876  578899999999


Q ss_pred             HHhc-----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCcccHHHHHHHHHHHHH-
Q 006562          493 NFKF-----KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD-  563 (640)
Q Consensus       493 ~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-  563 (640)
                      +...     +++++|+.+|+++.+.  .++.+++.+|.++...|   ++++|+.+|+++++.  .++.+++.+|.+|.. 
T Consensus       301 y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g  376 (490)
T 2xm6_A          301 YDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQG  376 (490)
T ss_dssp             HHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcC
Confidence            9988     8999999999999886  56789999999999866   899999999999987  578999999999999 


Q ss_pred             ---hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCH
Q 006562          564 ---LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       564 ---~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~  619 (640)
                         .+++++|+.+|+++.+.  .++.++..+|.+|..    .+++++|+.+|+++++..|+.+
T Consensus       377 ~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~  437 (490)
T 2xm6_A          377 KGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLF  437 (490)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHH
T ss_pred             CCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence               89999999999999875  468999999999998    8999999999999999987633

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=3.2e-26  Score=212.39  Aligned_cols=199  Identities=17%  Similarity=0.136  Sum_probs=109.0

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (640)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (640)
                      |.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            33444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhc-----------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562          492 VNFKF-----------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (640)
Q Consensus       492 ~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  560 (640)
                      ++...           |++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++..+ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            55555           666666666666666666666666666666666666666666666666666 666666666666


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      +...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666554

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.95  E-value=4.7e-26  Score=211.28  Aligned_cols=200  Identities=20%  Similarity=0.211  Sum_probs=180.9

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      |.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          458 ARAAL-----------GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (640)
Q Consensus       458 ~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (640)
                      ++...           |++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++ +++.++..+|.+
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence            99999           999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (640)
                      +...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++.
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=1.9e-23  Score=222.01  Aligned_cols=207  Identities=10%  Similarity=-0.007  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHhc
Q 006562          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAA-------LGESV-------EAIQDLSKALE-FEPNSADILHERGIVNFKF  496 (640)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~-------~~~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  496 (640)
                      ..++..|++++...|.++.+|..+|..+..       .|+++       +|+..|+++++ ..|++..+|..++.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999986       79987       99999999997 8999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH-HHHhcCHHHHHHHH
Q 006562          497 KDFNAAVEDLSACVKLDKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLANSEKALECL  574 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~  574 (640)
                      |++++|...|+++++..|.++ .+|..++.++...|++++|...|++++...|.....+...+.+ +...|++++|..+|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999985 6999999999999999999999999999988877777766665 34689999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH----HHHHHHHHHHHHcCCcccc
Q 006562          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI----ECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A  638 (640)
                      +++++..|+++.+|..++.++...|++++|...|++++...|.++    .+|...+......|+.+.+
T Consensus       415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~  482 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  482 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999876654    4888888888888987765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.94  E-value=5.7e-23  Score=218.27  Aligned_cols=220  Identities=8%  Similarity=-0.030  Sum_probs=203.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QRELE-------AAISDFTEAIQ-SNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  462 (640)
                      ..++..|++++..+|.++.+|+.+|..+..       .|+++       +|+..|+++++ ..|++..+|..+|.++...
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999999999999986       79977       99999999997 7999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHH
Q 006562          463 GESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEYKKAEEAH  540 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~  540 (640)
                      |++++|...|+++++..|.++ .+|..++.++...|++++|...|+++++..|.....+...+.+ +...|++++|...|
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~  414 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  414 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence            999999999999999999885 6999999999999999999999999999998887777776666 34589999999999


Q ss_pred             HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK----AYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       541 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      +++++..|+++.+|..++.++...|+.++|..+|++++...|.++.    +|...+......|+.+.+..++.++++..|
T Consensus       415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999999999999999999999998765544    888888889999999999999999999988


Q ss_pred             C
Q 006562          617 S  617 (640)
Q Consensus       617 ~  617 (640)
                      +
T Consensus       495 ~  495 (530)
T 2ooe_A          495 E  495 (530)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.94  E-value=5.2e-23  Score=216.26  Aligned_cols=357  Identities=15%  Similarity=-0.003  Sum_probs=286.2

Q ss_pred             HHHHHHHHH-h----cCCHHHHHHHHHHHHcccCchhHHHhHHHHHHh----hhcHHHHHHHHHHHHHcCCCchHHHHHH
Q 006562           39 ARIELAKLC-S----LRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQ----LELHKHVIRDCDKALQLDPTLLQAYILK  109 (640)
Q Consensus        39 ~~~~~~~~~-~----~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~~----~g~~~~Ai~~~~~al~~~P~~~~a~~~~  109 (640)
                      ....++.++ .    .+|+++|+.+|+++++.+ ++.+++++|.+|..    .+++++|+..++++++.  +++.+++.+
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L  153 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSM  153 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            345566555 4    789999999999999875 56778899999999    89999999999999875  579999999


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcc
Q 006562          110 GCAFSA----LGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKM  185 (640)
Q Consensus       110 g~~y~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (640)
                      |.+|..    .+++++|+..|+++++..  .+.....+..+.               ..+                    
T Consensus       154 g~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y---------------~~g--------------------  196 (490)
T 2xm6_A          154 GDAYFEGDGVTRDYVMAREWYSKAAEQG--NVWSCNQLGYMY---------------SRG--------------------  196 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH---------------HHT--------------------
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH---------------hcC--------------------
Confidence            999998    899999999999996542  221111110000               000                    


Q ss_pred             hhhhhcCCCCCccccccCCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCcccc
Q 006562          186 SETSENHNKSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTH  265 (640)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (640)
                                                                             .                        
T Consensus       197 -------------------------------------------------------~------------------------  197 (490)
T 2xm6_A          197 -------------------------------------------------------L------------------------  197 (490)
T ss_dssp             -------------------------------------------------------S------------------------
T ss_pred             -------------------------------------------------------C------------------------
Confidence                                                                   0                        


Q ss_pred             ccccchhhccccCCcccccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHH
Q 006562          266 ASRDASEINRQSSDDFDICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESR  345 (640)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  345 (640)
                                                                                         -..++++.+...+
T Consensus       198 -------------------------------------------------------------------g~~~~~~~A~~~~  210 (490)
T 2xm6_A          198 -------------------------------------------------------------------GVERNDAISAQWY  210 (490)
T ss_dssp             -------------------------------------------------------------------SSCCCHHHHHHHH
T ss_pred             -------------------------------------------------------------------CCCcCHHHHHHHH
Confidence                                                                               0011223333332


Q ss_pred             HhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562          346 SKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVN----EGKYASAISIFDQILKEDPMYPEALIGR  421 (640)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l  421 (640)
                      .+.                         .  ...++..++.+|.++..    .+++++|+.+|+++.+.  .++.+++.+
T Consensus       211 ~~a-------------------------~--~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~l  261 (490)
T 2xm6_A          211 RKS-------------------------A--TSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRL  261 (490)
T ss_dssp             HHH-------------------------H--HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHH
T ss_pred             HHH-------------------------H--HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence            221                         1  12467889999999997    89999999999999875  568999999


Q ss_pred             HHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          422 GTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-----GESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       422 a~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      |.+|..    .+++++|+.+|+++.+.  .++.+++.+|.+|...     +++++|+.+|+++.+.  .++.+++.+|.+
T Consensus       262 g~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~  337 (490)
T 2xm6_A          262 GYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAI  337 (490)
T ss_dssp             HHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Confidence            999999    89999999999999865  5788999999999998     9999999999999987  467899999999


Q ss_pred             HHhcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH--
Q 006562          493 NFKFK---DFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD--  563 (640)
Q Consensus       493 ~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~--  563 (640)
                      |...|   ++++|+.+|+++++.  .++.+++.+|.+|..    .+++++|+.+|+++.+..  ++.++..+|.+|..  
T Consensus       338 y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~  413 (490)
T 2xm6_A          338 YFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGL  413 (490)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTS
T ss_pred             HHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCC
Confidence            99866   899999999999987  679999999999999    899999999999999864  68999999999999  


Q ss_pred             --hcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          564 --LANSEKALECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       564 --~g~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                        .+++++|+.+|+++++..|   .++.+...+|.++..  +...|.....+.++..|+...
T Consensus       414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~  473 (490)
T 2xm6_A          414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAW  473 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHH
Confidence              8999999999999999984   488888888887664  445555555555555565443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.94  E-value=4.8e-24  Score=206.83  Aligned_cols=217  Identities=11%  Similarity=0.020  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKE--DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      .+..++..+...|++++|++.+++++..  +|+++.+++.+|.++...|++++|+..+++     |.+..++..+|.++.
T Consensus        67 a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~  141 (291)
T 3mkr_A           67 AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILL  141 (291)
T ss_dssp             HHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH
Confidence            3344566666666777777777776664  477777777777777777777777777766     666777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      .+|++++|+..++++++.+|++.......+  .++...|++++|+..|++++...|+++.+++.+|.++...|++++|+.
T Consensus       142 ~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~  221 (291)
T 3mkr_A          142 KLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG  221 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            777777777777777777776654333322  233344667777777777777777777777777777777777777777


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEK-ALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      .|++++..+|+++.++.++|.++...|++++ +..+++++++.+|+++.+..    +..+.+.++++..-|
T Consensus       222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence            7777777777777777777777777777655 45666777777777766542    333444444444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.93  E-value=2.4e-24  Score=207.85  Aligned_cols=182  Identities=18%  Similarity=0.081  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|...+
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  153 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY  153 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999994444


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhC---CCc-----HHHHHHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD---FNAAVEDLSACVKLD---KEN-----KSAYTYLGLALSS  529 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~---~~~-----~~~~~~la~~~~~  529 (640)
                      ..+++++|+..|+++++..|.+..++..+|.++...|+   +++|+..++++++..   |+.     ..++..+|.++..
T Consensus       154 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  233 (272)
T 3u4t_A          154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI  233 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            55688888888888888888888888888888888887   778888888888765   331     2456666777777


Q ss_pred             cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHH
Q 006562          530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  562 (640)
                      .|++++|+.+|++++..+|+++.++..++.+..
T Consensus       234 ~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~  266 (272)
T 3u4t_A          234 NRDKVKADAAWKNILALDPTNKKAIDGLKMKLE  266 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred             cCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence            777777777777777777776666666655543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.93  E-value=1.5e-23  Score=203.29  Aligned_cols=253  Identities=11%  Similarity=-0.007  Sum_probs=220.8

Q ss_pred             hccCccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcHH
Q 006562          374 SKSKSIS-VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--NPSAGE  450 (640)
Q Consensus       374 ~~~~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~  450 (640)
                      ...+|.+ .+..+.++.+++..|+++.|+..++.   .+|....++..++..+...|++++|+..+++++..  +|+++.
T Consensus        26 ~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~  102 (291)
T 3mkr_A           26 KPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT  102 (291)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHH
T ss_pred             ccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHH
Confidence            3444554 45667889999999999999998866   25556788889999999999999999999999876  599999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHH
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG--LALS  528 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la--~~~~  528 (640)
                      +++.+|.++...|++++|+..+++     |.+..++..+|.++..+|++++|+..++++++.+|++.......+  .++.
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~  177 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA  177 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHh
Confidence            999999999999999999999998     889999999999999999999999999999999999875554444  3334


Q ss_pred             HcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH-HHHH
Q 006562          529 SIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK-AIKD  607 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~-A~~~  607 (640)
                      ..|++++|+..|++++...|.++.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|++.+ +..+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            458999999999999999999999999999999999999999999999999999999999999999999999976 5789


Q ss_pred             HHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          608 LSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       608 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ++++++++|+++.+..    +..+.+.|++|
T Consensus       258 ~~~~~~~~P~~~~~~d----~~~~~~~fd~~  284 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKE----YRAKENDFDRL  284 (291)
T ss_dssp             HHHHHHHCTTCHHHHH----HHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHH----HHHHHHHHHHH
Confidence            9999999999987653    34444444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=220.15  Aligned_cols=223  Identities=20%  Similarity=0.202  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRE--------------------LEAA  434 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A  434 (640)
                      +..+..+|.++...|++++|+..+++++...|..      ..++..+|.++...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            5567789999999999999999999999876543      5589999999999999                    9999


Q ss_pred             HHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHH
Q 006562          435 ISDFTEAIQS------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAA  502 (640)
Q Consensus       435 ~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A  502 (640)
                      +.++.+++..      .|....++..+|.++...|++++|+.++++++...|...      .++..+|.++...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            9999999876      233456889999999999999999999999998866543      3889999999999999999


Q ss_pred             HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHH
Q 006562          503 VEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKA  570 (640)
Q Consensus       503 ~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A  570 (640)
                      +.++++++...|..      ..++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999999887654      6788899999999999999999999999875443      67888999999999999999


Q ss_pred             HHHHHHHHHhCC------CChHHHHHHHHHHHhcCCHHH
Q 006562          571 LECLQQVLYIDK------RFSKAYHLRGLLLHGLGQHKK  603 (640)
Q Consensus       571 ~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~  603 (640)
                      +.+++++++..+      ....++..+|.++...|+...
T Consensus       327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            999999988743      335678889999998887643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=3.9e-24  Score=202.43  Aligned_cols=218  Identities=22%  Similarity=0.221  Sum_probs=117.2

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (640)
                      ..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+|.+
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  100 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV  100 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            34455566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      +...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  180 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS  180 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666555555555555555555555555555


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      .+++++...|.++.++..+|.++...|++++|+.+++++++.+|+++.++..++.+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence            5555555555555555555555555555555555555555555555555555444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.93  E-value=4.6e-24  Score=201.99  Aligned_cols=221  Identities=19%  Similarity=0.154  Sum_probs=191.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      .+..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  101 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY  101 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH
Q 006562          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC  573 (640)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  573 (640)
                      ...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..
T Consensus       102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          574 LQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       574 ~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      +++++...|.++.++..+|.++...|++++|+.+++++++.+|++..++..++.+....|+
T Consensus       182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~  242 (243)
T 2q7f_A          182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHH  242 (243)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-------
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999999999999999999999999999998887765553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-23  Score=201.02  Aligned_cols=217  Identities=17%  Similarity=0.176  Sum_probs=208.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADIL  486 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~  486 (640)
                      .+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++...|.+       +.++
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            46789999999999999999999999999999 899999999999999999999999999999998876       7899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          487 HERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      ..+|.++...|++++|+..+++++...|.        +.++...|++++|+..+++++..+|..+.++..+|.++...|+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999987        5677888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +++|+..+++++...|.++.++..+|.++...|++++|+..++++++.+|+++.++..+|.++..+|++++|+
T Consensus       155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999885

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.92  E-value=5.5e-24  Score=205.55  Aligned_cols=243  Identities=18%  Similarity=0.151  Sum_probs=189.2

Q ss_pred             HHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          392 VNEGKYASAISIFDQILKED----PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  467 (640)
                      ...|++++|+..|+++++..    |.++.+++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            34577888888888888763    34567788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  547 (640)
                      |+..|++++...|.+..++..+|.++...|++++|+..+++++...|++.......+.. ...|++++|+..+.+++...
T Consensus        96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcC
Confidence            88888888888888888888888888888888888888888888888887666555544 55688888888888888877


Q ss_pred             cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR----FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       548 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      |.+...+. ++.++...++.++|+..+.+++...|.    ++.++..+|.++...|++++|+.+|++++..+|++...  
T Consensus       175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~--  251 (275)
T 1xnf_A          175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE--  251 (275)
T ss_dssp             CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH--
T ss_pred             CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH--
Confidence            77655543 666677777788888888888766553    35778888888888888888888888888888876433  


Q ss_pred             HHHHHHHHcCCccccc
Q 006562          624 LRASCYHAIGEYREAV  639 (640)
Q Consensus       624 ~la~~~~~~g~~~~Al  639 (640)
                       .+.++..+|++++|+
T Consensus       252 -~~~~~~~l~~~~~a~  266 (275)
T 1xnf_A          252 -HRYALLELSLLGQDQ  266 (275)
T ss_dssp             -HHHHHHHHHHHHHC-
T ss_pred             -HHHHHHHHHHHHhhH
Confidence             366777777777775

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.92  E-value=3e-24  Score=220.69  Aligned_cols=262  Identities=18%  Similarity=0.151  Sum_probs=231.6

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCC
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPS  447 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~  447 (640)
                      +.....++.+|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|.
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  124 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG  124 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence            34466778899999999999999999999999999987    58899999999999999999999999987      466


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEF------EPNSADILHERGIVNFKFKD-----------------FNAAVE  504 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~-----------------~~~A~~  504 (640)
                      ...++..+|.++...|++++|+.++++++..      .|....++..+|.++...|+                 +++|+.
T Consensus       125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~  204 (411)
T 4a1s_A          125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence            6789999999999999999999999999988      44556789999999999999                 999999


Q ss_pred             HHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH------HHHHHHHHHHHHhcCHHHHHH
Q 006562          505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL------EAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       505 ~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A~~  572 (640)
                      ++++++.+.      +....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            999998764      23356889999999999999999999999999876543      388999999999999999999


Q ss_pred             HHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHcCCccccc
Q 006562          573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++++++...+..      ..++..+|.++...|++++|+.++++++.+.+.      ...++..+|.+|..+|++++|+
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  363 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL  363 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence            999999887643      678899999999999999999999999987543      2468899999999999999885

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.92  E-value=6.2e-24  Score=217.69  Aligned_cols=260  Identities=20%  Similarity=0.202  Sum_probs=166.9

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAG  449 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~  449 (640)
                      ....++..|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|...
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            345566667777777777777777777777666663    45666777777777777777777766655      22334


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAV  503 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~  503 (640)
                      .++..+|.++...|++++|+.++++++...|..      ..++..+|.++...|+                    +++|+
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            566667777777777777777777766664432      3366666777777777                    67777


Q ss_pred             HHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHH
Q 006562          504 EDLSACVKL------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       504 ~~~~~al~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~  571 (640)
                      .++.+++..      .|....++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            777666655      22234556666777777777777777777766654433      236666777777777777777


Q ss_pred             HHHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHcCCccccc
Q 006562          572 ECLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       572 ~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Al  639 (640)
                      .++++++...+..      ..++..+|.++...|++++|+.++++++.+.+..      ..++..+|.+|..+|++++|+
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            7777776655443      4566666777777777777777777766653332      456666777777777766664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.92  E-value=1.8e-22  Score=188.44  Aligned_cols=212  Identities=15%  Similarity=0.089  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (640)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (640)
                      |.++.++..+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A            5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            44445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHhc-CCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562          492 VNFKF-KDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (640)
Q Consensus       492 ~~~~~-~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  568 (640)
                      ++... |++++|+..+++++.  ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            55555 555555555555555  344445555556666666666666666666666655655666666666666666666


Q ss_pred             HHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          569 KALECLQQVLYIDK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       569 ~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      +|+.++++++...| .++..+..++.++...|++++|..+++.+.+..|+++.+..
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            66666666666666 55555555566666666666666666666656666555443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.92  E-value=3.7e-22  Score=192.55  Aligned_cols=234  Identities=18%  Similarity=0.164  Sum_probs=216.3

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      +|.++..++.+|..+...|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            466788999999999999999999999999998  7889999999999999    999999999999999885  78999


Q ss_pred             HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          453 KRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (640)
Q Consensus       453 ~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (640)
                      ..+|.+|..    .+++++|+.+|++++...  ++.++..+|.+|..    .+++++|+.+|+++++..  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            999999999    999999999999999874  78999999999999    999999999999999975  688999999


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          525 LALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       525 ~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      .++..    .+++++|+.+|+++++..  ++.++..+|.+|..    .+++++|+.+|+++++..|  +.++..+|.++.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            99999    999999999999999874  57899999999999    9999999999999998865  889999999999


Q ss_pred             h----cCCHHHHHHHHHHhhccCCCCHHHH
Q 006562          597 G----LGQHKKAIKDLSSGLGIDPSNIECL  622 (640)
Q Consensus       597 ~----~g~~~~A~~~~~~al~~~p~~~~~~  622 (640)
                      .    .+++++|+.+|+++++..|++...+
T Consensus       230 ~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~  259 (273)
T 1ouv_A          230 NGEGVTRNEKQAIENFKKGCKLGAKGACDI  259 (273)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred             cCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence            9    9999999999999999998755443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.92  E-value=1.8e-22  Score=192.23  Aligned_cols=214  Identities=15%  Similarity=0.098  Sum_probs=181.1

Q ss_pred             Cccc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          377 KSIS-VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       377 ~~~~-~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      +|.. +..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++..|.+..++..+
T Consensus        32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence            3443 778888999999999999999999999999998899999999999999999999999999999888888888888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          456 GQARAALGESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (640)
                      |.++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|++
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  191 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY  191 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence            8888888888888888888888  77777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (640)
                      ++|+..+++++...|.+...+..++.++...|++++|..+++++++..|+++.+...
T Consensus       192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            888888888888888888888888888888888888888888888888877765543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.91  E-value=8e-23  Score=194.68  Aligned_cols=216  Identities=17%  Similarity=0.123  Sum_probs=207.1

Q ss_pred             hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 006562          410 EDPMY-PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHE  488 (640)
Q Consensus       410 ~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  488 (640)
                      .+|.. +.+++.+|.++...|++++|+..|+++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..
T Consensus        31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  110 (252)
T 2ho1_A           31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN  110 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence            34554 78899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          489 RGIVNFKFKDFNAAVEDLSACVK--LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      +|.++...|++++|+.++++++.  ..|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus       111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999  8888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (640)
                      +++|+.++++++...|.+..++..++.++...|++++|..+++++++..|+++.++..+
T Consensus       191 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l  249 (252)
T 2ho1_A          191 YVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ  249 (252)
T ss_dssp             HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998776543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.91  E-value=3.7e-22  Score=186.22  Aligned_cols=216  Identities=16%  Similarity=0.105  Sum_probs=206.2

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      ..|.++..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++++...|.+..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A            3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          456 GQARAAL-GESVEAIQDLSKALE--FEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE  532 (640)
Q Consensus       456 a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  532 (640)
                      |.++... |++++|+..+++++.  ..|....++..+|.++...|++++|+..++++++..|.++.++..+|.++...|+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            9999999 999999999999999  6666788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Q 006562          533 YKKAEEAHLKAIQLDR-NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR  591 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  591 (640)
                      +++|+..+++++...| .++..+..++.++...|+++.|..+++.+....|+++.+...+
T Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9999999999999999 9999999999999999999999999999999999998876654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.91  E-value=1.2e-23  Score=209.22  Aligned_cols=259  Identities=19%  Similarity=0.197  Sum_probs=228.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP----EALIGRGTARAFQRELEAAISDFTEAIQS------NPSAGE  450 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~  450 (640)
                      ...++..|..++..|++++|+..|+++++..|.++    .++..+|.++...|++++|+.++++++..      .|....
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            55678899999999999999999999999999984    67889999999999999999999999877      344567


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKD--------------------FNAAVE  504 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~--------------------~~~A~~  504 (640)
                      ++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|+                    +++|+.
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            89999999999999999999999999886543      3488999999999999                    999999


Q ss_pred             HHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHHH
Q 006562          505 DLSACVKLD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       505 ~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~  572 (640)
                      ++++++...      +....++..+|.++...|++++|+..+++++...+..      ..++..+|.++...|++++|+.
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999998762      3335688999999999999999999999999876543      3488999999999999999999


Q ss_pred             HHHHHHHhCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------HHHHHHHHHHHHHcCCccccc
Q 006562          573 CLQQVLYIDKRF------SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       573 ~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ++++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  323 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  323 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            999999886654      6788999999999999999999999999875432      458889999999999999885

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=1.4e-22  Score=182.73  Aligned_cols=167  Identities=22%  Similarity=0.301  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (640)
                      .+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.++.++..+|.++..
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHL  541 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  541 (640)
                      .++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+
T Consensus        86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  165 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK  165 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHccCc
Q 006562          542 KAIQLDR  548 (640)
Q Consensus       542 ~a~~~~~  548 (640)
                      ++++.+|
T Consensus       166 ~al~~~p  172 (184)
T 3vtx_A          166 KALEKEE  172 (184)
T ss_dssp             HHHHTTH
T ss_pred             HHHhCCc
Confidence            4444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.91  E-value=2.1e-22  Score=181.62  Aligned_cols=174  Identities=23%  Similarity=0.370  Sum_probs=169.4

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      +++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+.+++...|.+..++..+|.+
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (640)
                      +...++++.|...+.+++...|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.+|..+|++++|+.
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCChH
Q 006562          573 CLQQVLYIDKRFSK  586 (640)
Q Consensus       573 ~~~~al~~~~~~~~  586 (640)
                      .|+++++.+|+++.
T Consensus       163 ~~~~al~~~p~~a~  176 (184)
T 3vtx_A          163 YFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHHTTHHHHH
T ss_pred             HHHHHHhCCccCHH
Confidence            99999999997654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.91  E-value=7.9e-23  Score=211.51  Aligned_cols=236  Identities=15%  Similarity=0.058  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE-DPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      +..++.+|.++...+.++++........+. ...++.+++.+|.+|...|   ++++|+.+|+++.+..|.....++.+|
T Consensus       141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg  220 (452)
T 3e4b_A          141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA  220 (452)
T ss_dssp             TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            667788888888888665555543332221 2233448899999999999   899999999999999988888888899


Q ss_pred             HHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          457 QARAAL----GESVEAIQDLSKALEFEPNSADILHERGIV-N--FKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS  529 (640)
Q Consensus       457 ~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  529 (640)
                      .+|...    +++++|+.+|+++.   |.++.+++.+|.+ +  ...+++++|+.+|+++.+.  .++.+++.+|.+|. 
T Consensus       221 ~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-  294 (452)
T 3e4b_A          221 RVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-  294 (452)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-
Confidence            998765    78999999999987   8888999999998 4  5688999999999998865  47889999999988 


Q ss_pred             cC-----CHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh---
Q 006562          530 IG-----EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG---  597 (640)
Q Consensus       530 ~g-----~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~---  597 (640)
                      .|     ++++|+.+|+++.   +.++.+++++|.+|..    ..++++|+.+|+++.+  +.++.+.+.+|.+|..   
T Consensus       295 ~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g  369 (452)
T 3e4b_A          295 EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKG  369 (452)
T ss_dssp             HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTT
T ss_pred             cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCC
Confidence            55     8999999999988   8889999999988876    3489999999999876  4567888899998875   


Q ss_pred             -cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          598 -LGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       598 -~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                       ..++.+|..+|+++.+..+  ..+...++.+.
T Consensus       370 ~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~  400 (452)
T 3e4b_A          370 TKPDPLNAYVFSQLAKAQDT--PEANDLATQLE  400 (452)
T ss_dssp             BCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHH
Confidence             5689999999999987654  44444454443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.91  E-value=5.7e-23  Score=213.98  Aligned_cols=216  Identities=19%  Similarity=0.197  Sum_probs=204.6

Q ss_pred             CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          395 GKYASAISIFDQILKEDPMYPEALIGRGTARAFQREL-EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (640)
Q Consensus       395 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  473 (640)
                      +.+++++..+.+.....|.++.+++.+|.++...|++ ++|+.+|+++++.+|+++.++..+|.+|...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3477888888888888999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------CCHHHH
Q 006562          474 KALEFEPNSADILHERGIVNFKF---------KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI--------GEYKKA  536 (640)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------g~~~~A  536 (640)
                      ++++++|+ ..++..+|.++...         |++++|+..|+++++++|+++.+|..+|.++...        |++++|
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            99999998 79999999999999         9999999999999999999999999999999999        999999


Q ss_pred             HHHHHHHHccCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          537 EEAHLKAIQLDR---NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       537 ~~~~~~a~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      +..|++++..+|   .++.++..+|.+|...|++++|+..|+++++.+|+++.++..++.++...|++++|+..+.+.
T Consensus       241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999   899999999999999999999999999999999999999999999999999999999877654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.90  E-value=2.3e-22  Score=194.12  Aligned_cols=227  Identities=18%  Similarity=0.070  Sum_probs=204.0

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .|.++..++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|
T Consensus        39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  118 (275)
T 1xnf_A           39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  118 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (640)
                      .++...|++++|+..+++++...|.+.......+.+ ...|++++|+..+.+++...|.+...+. ++.++...++.++|
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a  196 (275)
T 1xnf_A          119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTL  196 (275)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHH
Confidence            999999999999999999999999998766655544 6779999999999999999998866554 77888889999999


Q ss_pred             HHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006562          537 EEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDL  608 (640)
Q Consensus       537 ~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  608 (640)
                      +..+.+++...|..    +.++..+|.++...|++++|+.+|++++..+|++...+   +.++...|++++|+..+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred             HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence            99999999887754    78999999999999999999999999999999775543   77888999999999887

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.90  E-value=6.4e-23  Score=213.56  Aligned_cols=210  Identities=21%  Similarity=0.202  Sum_probs=203.9

Q ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562          429 RELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES-VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS  507 (640)
Q Consensus       429 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  507 (640)
                      +.+++++..+.+.....|.++.+++.+|.++...|++ ++|+..|+++++.+|.+..++..+|.++...|++++|+.+|+
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4577888889999999999999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh--------cCHHHH
Q 006562          508 ACVKLDKENKSAYTYLGLALSSI---------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL--------ANSEKA  570 (640)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------g~~~~A  570 (640)
                      ++++.+|+ ..++..+|.++...         |++++|+..|++++..+|+++.+|..+|.++...        |++++|
T Consensus       162 ~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A  240 (474)
T 4abn_A          162 GALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA  240 (474)
T ss_dssp             HHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence            99999999 79999999999999         9999999999999999999999999999999999        999999


Q ss_pred             HHHHHHHHHhCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          571 LECLQQVLYIDK---RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       571 ~~~~~~al~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +..|+++++.+|   .++.++..+|.++...|++++|+..|+++++++|++..++..++.++..+|++++|+
T Consensus       241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999   999999999999999999999999999999999999999999999999999999886

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.90  E-value=1.5e-22  Score=207.97  Aligned_cols=202  Identities=18%  Similarity=0.180  Sum_probs=150.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccC-----------------HHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRE-----------------LEAAISD  437 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~-----------------~~~A~~~  437 (640)
                      ...+..+|.++...|++++|+..|++++..      .+....++..+|.++...|+                 +++|+.+
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            567788999999999999999999999987      45567789999999999999                 8999999


Q ss_pred             HHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHH
Q 006562          438 FTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVED  505 (640)
Q Consensus       438 ~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~  505 (640)
                      ++++++..+      ....++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.+
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH  285 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            888876532      2345777788888888888888888888887765432      2677777777777777777777


Q ss_pred             HHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHHHHH
Q 006562          506 LSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKALEC  573 (640)
Q Consensus       506 ~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~  573 (640)
                      +++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.+
T Consensus       286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  365 (411)
T 4a1s_A          286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY  365 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            77777765532      4566667777777777777777777776654332      34666666666677777777777


Q ss_pred             HHHHHHhCC
Q 006562          574 LQQVLYIDK  582 (640)
Q Consensus       574 ~~~al~~~~  582 (640)
                      +++++.+.+
T Consensus       366 ~~~al~~~~  374 (411)
T 4a1s_A          366 AEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHHh
Confidence            776666654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.90  E-value=3.2e-22  Score=198.95  Aligned_cols=200  Identities=20%  Similarity=0.236  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccC--------------------HHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRE--------------------LEAA  434 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~--------------------~~~A  434 (640)
                      +..+..+|.++...|++++|+..++++++..+..      ..++..+|.++...|+                    +++|
T Consensus        83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A  162 (338)
T 3ro2_A           83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA  162 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence            5567788999999999999999999998875433      3478888899988888                    8888


Q ss_pred             HHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHH
Q 006562          435 ISDFTEAIQSN------PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAA  502 (640)
Q Consensus       435 ~~~~~~al~~~------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A  502 (640)
                      +.++++++...      +....++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|
T Consensus       163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  242 (338)
T 3ro2_A          163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  242 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence            88888776552      2223456666666666666666666666666554321      12455555555555555555


Q ss_pred             HHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHHHHHHHHhcCHHHH
Q 006562          503 VEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHLTQFYQDLANSEKA  570 (640)
Q Consensus       503 ~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A  570 (640)
                      +.++++++...+..      ..++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  322 (338)
T 3ro2_A          243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA  322 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            55555555443322      3344444444444444444444444444432221      22333444444444444444


Q ss_pred             HHHHHHHHHh
Q 006562          571 LECLQQVLYI  580 (640)
Q Consensus       571 ~~~~~~al~~  580 (640)
                      ..++++++..
T Consensus       323 ~~~~~~a~~~  332 (338)
T 3ro2_A          323 MHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=1.8e-21  Score=182.19  Aligned_cols=217  Identities=18%  Similarity=0.193  Sum_probs=119.2

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      .++..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.++.++..+|.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            3445555566666666666666666666665555 555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      ++...|++++|+..++++++..|+++..+..++                           .++..+|.++...|++++|+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~---------------------------~~~~~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYA---------------------------IYYLKEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH---------------------------HHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHH---------------------------HHHHHHhHHHHHhccHHHHH
Confidence            555555555555555555555555552211111                           24555555555566666666


Q ss_pred             HHHHHHHccCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          538 EAHLKAIQLDRN--FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       538 ~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      ..|++++..+|+  ++.++..+|.++...|+     ..++++..+.+.....+  .+......+.+++|+.+|+++++++
T Consensus       138 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          138 ENYKHATDVTSKKWKTDALYSLGVLFYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            666666666665  55566666666544432     23344444444333222  2233344455666666666666666


Q ss_pred             CCCHHHHHHHHHHH
Q 006562          616 PSNIECLYLRASCY  629 (640)
Q Consensus       616 p~~~~~~~~la~~~  629 (640)
                      |+++.++..++.+.
T Consensus       211 p~~~~~~~~l~~i~  224 (228)
T 4i17_A          211 PNRTEIKQMQDQVK  224 (228)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            66666666665554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.90  E-value=3.6e-21  Score=180.12  Aligned_cols=132  Identities=20%  Similarity=0.213  Sum_probs=107.2

Q ss_pred             hHHHHHhhhhccCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 006562          365 NKKFCVTRISKSKS-ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ  443 (640)
Q Consensus       365 ~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (640)
                      .....+..+....| .+...++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++
T Consensus        25 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  104 (228)
T 4i17_A           25 VAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIK  104 (228)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            33344666677777 88889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhc
Q 006562          444 SNPSAG-------EAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGIVNFKF  496 (640)
Q Consensus       444 ~~p~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~  496 (640)
                      .+|+++       .++..+|.++...|++++|+..|+++++.+|+  ++.++..+|.++...
T Consensus       105 ~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~  166 (228)
T 4i17_A          105 AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN  166 (228)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence            999998       44666666666666666666666666666666  556666666666443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=2.7e-21  Score=189.84  Aligned_cols=222  Identities=8%  Similarity=-0.022  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHc
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAF-------QREL-------EAAISDFTEAIQ-SNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~  462 (640)
                      .+|+..|++++..+|.++.+|+.+|..+..       .|++       ++|+..|+++++ ..|++..+|..+|.++...
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            677788888888888888888888877763       4664       788888888888 5788888888888888888


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHH
Q 006562          463 GESVEAIQDLSKALEFEPNSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEAH  540 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~  540 (640)
                      |++++|...|+++++..|.++. +|..+|.++...|++++|...|+++++..|....++...+.+... .|++++|+..|
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~  192 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF  192 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8888888888888888887775 788888888888888888888888888877777776655555433 68888888888


Q ss_pred             HHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CC-CChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI---DK-RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       541 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      ++++..+|+++.+|..++.++...|++++|+.+|++++..   .| ....+|..++.++...|+++.|...++++++..|
T Consensus       193 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          193 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            8888888888888888888888888888888888888874   44 3566777778888888888888888888888777


Q ss_pred             CCH
Q 006562          617 SNI  619 (640)
Q Consensus       617 ~~~  619 (640)
                      ++.
T Consensus       273 ~~~  275 (308)
T 2ond_A          273 EEY  275 (308)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            644

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.89  E-value=1.8e-20  Score=180.69  Aligned_cols=217  Identities=18%  Similarity=0.157  Sum_probs=202.2

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 006562          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADIL  486 (640)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  486 (640)
                      +|.++.+++.+|.++...|++++|+.+|+++++  |.++.+++.+|.++..    .+++++|+.+|+++++..  ++.++
T Consensus         2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~   77 (273)
T 1ouv_A            2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC   77 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence            578899999999999999999999999999998  7888999999999999    999999999999999985  78999


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHH
Q 006562          487 HERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLT  558 (640)
Q Consensus       487 ~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la  558 (640)
                      +.+|.++..    .+++++|+.+|++++..  +++.+++.+|.++..    .+++++|+.+|++++...  ++.++..+|
T Consensus        78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg  153 (273)
T 1ouv_A           78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHH
Confidence            999999999    99999999999999987  489999999999999    999999999999999876  578999999


Q ss_pred             HHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562          559 QFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (640)
Q Consensus       559 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (640)
                      .++..    .+++++|+.+|+++++.  .++.++..+|.++..    .+++++|+.+|+++++..|  +.+++.+|.+|.
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~  229 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQY  229 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHH
Confidence            99999    99999999999999987  468899999999999    9999999999999999866  889999999999


Q ss_pred             H----cCCccccc
Q 006562          631 A----IGEYREAV  639 (640)
Q Consensus       631 ~----~g~~~~Al  639 (640)
                      .    .+++++|+
T Consensus       230 ~g~~~~~~~~~A~  242 (273)
T 1ouv_A          230 NGEGVTRNEKQAI  242 (273)
T ss_dssp             TTSSSSCCSTTHH
T ss_pred             cCCCcccCHHHHH
Confidence            9    99999885

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=7.4e-21  Score=186.73  Aligned_cols=248  Identities=10%  Similarity=0.016  Sum_probs=218.3

Q ss_pred             HHHhhhhccCcccHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHH
Q 006562          368 FCVTRISKSKSISVDFRLSRGIAQVN-------EGKY-------ASAISIFDQILK-EDPMYPEALIGRGTARAFQRELE  432 (640)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~-------~g~~-------~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~  432 (640)
                      ..+++++...|.++.+|+..|..+..       .|++       ++|+..|+++++ .+|++..+|..+|.++...|+++
T Consensus        37 ~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~  116 (308)
T 2ond_A           37 FAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE  116 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence            46677778899999999999998874       5886       999999999999 79999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006562          433 AAISDFTEAIQSNPSAGE-AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK-FKDFNAAVEDLSACV  510 (640)
Q Consensus       433 ~A~~~~~~al~~~p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al  510 (640)
                      +|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|...|++++
T Consensus       117 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al  196 (308)
T 2ond_A          117 KVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL  196 (308)
T ss_dssp             HHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            999999999999999887 999999999999999999999999999999998888777766543 799999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---Ccc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562          511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL---DRN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK  586 (640)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  586 (640)
                      +.+|+++.+|..++.++...|++++|+..|++++..   .|+ ...+|..++.++...|+++.|..+++++++..|+++.
T Consensus       197 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~  276 (308)
T 2ond_A          197 KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence            999999999999999999999999999999999995   553 6889999999999999999999999999999997553


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHH
Q 006562          587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRAS  627 (640)
Q Consensus       587 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  627 (640)
                      .... +.+           ....+.+.++|++++.+..+|.
T Consensus       277 ~~~~-~~~-----------~~r~~~l~~~P~~~~~ln~lgY  305 (308)
T 2ond_A          277 GKET-ALL-----------VDRYKFMDLYPCSASELKALGY  305 (308)
T ss_dssp             SCHH-HHH-----------HTTTCBTTBCSSCHHHHHTTTC
T ss_pred             cchH-HHH-----------HHHHHhcccCCCCHHHHHhcCC
Confidence            3211 222           1112677899999998877663

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.87  E-value=7.4e-22  Score=194.20  Aligned_cols=244  Identities=14%  Similarity=0.098  Sum_probs=201.2

Q ss_pred             hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 006562          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS-  444 (640)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-  444 (640)
                      ...+|..+..+..+|..+...|++++|+.+|+++++.        .|....++..+|.++...|++++|+.++++++.. 
T Consensus        20 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~   99 (311)
T 3nf1_A           20 GYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR   99 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            3456777899999999999999999999999999984        5667889999999999999999999999999987 


Q ss_pred             -------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          445 -------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       445 -------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                             .|....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.+++++
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  179 (311)
T 3nf1_A          100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA  179 (311)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                   35567789999999999999999999999999874        445678999999999999999999999999


Q ss_pred             HHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc---------------cHHHHHHHHHHHHHhcC
Q 006562          510 VKL--------DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---------------FLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       510 l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---------------~~~~~~~la~~~~~~g~  566 (640)
                      +..        .|....++..+|.++...|++++|+..+++++...|.               ....+...+..+...+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (311)
T 3nf1_A          180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS  259 (311)
T ss_dssp             HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence            998        6667788999999999999999999999999976443               12334445555666777


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      +.+|...+.++....|..+.++..+|.++...|++++|+.+|++++++.|.
T Consensus       260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            888888999999888999999999999999999999999999999988765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.87  E-value=1.1e-19  Score=174.38  Aligned_cols=240  Identities=14%  Similarity=0.037  Sum_probs=221.5

Q ss_pred             HHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HH
Q 006562          389 IAQVNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQR--ELEAAISDFTEAIQSNPSAGEAWKRRGQAR----AA  461 (640)
Q Consensus       389 ~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~  461 (640)
                      ......|.+ ++|+..+.+++.++|++..+|...+.++...|  ++++++..+.+++..+|++..+|...+.++    ..
T Consensus        40 ~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           40 LALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh
Confidence            344555665 69999999999999999999999999999999  999999999999999999999999999999    66


Q ss_pred             c---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----
Q 006562          462 L---GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--AAVEDLSACVKLDKENKSAYTYLGLALSSIGE----  532 (640)
Q Consensus       462 ~---~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~----  532 (640)
                      .   +++++++..+.++++.+|.+..+|...+.++...|.++  +++.++.++++.+|.+..+|...+.+....+.    
T Consensus       120 l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~  199 (306)
T 3dra_A          120 NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD  199 (306)
T ss_dssp             TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred             ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence            7   78999999999999999999999999999999999998  99999999999999999999999999999987    


Q ss_pred             --HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHhC---CCChHHHHHHHHHHHhcCCHHHHHH
Q 006562          533 --YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK-ALECLQQVLYID---KRFSKAYHLRGLLLHGLGQHKKAIK  606 (640)
Q Consensus       533 --~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~  606 (640)
                        +++++.++.+++..+|.+..+|+.++.++...|+... ...++.+++...   |.++.++..++.++.+.|+.++|++
T Consensus       200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence              9999999999999999999999999999999998555 556777777766   7889999999999999999999999


Q ss_pred             HHHHhhc-cCCCCHHHHHHHHHH
Q 006562          607 DLSSGLG-IDPSNIECLYLRASC  628 (640)
Q Consensus       607 ~~~~al~-~~p~~~~~~~~la~~  628 (640)
                      .|+.+.+ .+|-....|...+..
T Consensus       280 ~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          280 VYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHHHHhccChHHHHHHHHHHhh
Confidence            9999996 899999998877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=6e-21  Score=206.05  Aligned_cols=174  Identities=18%  Similarity=0.263  Sum_probs=106.6

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      ..|.+++++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.++..+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK  535 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~  535 (640)
                      |.++..+|++++|+..|+++++++|++..++..+|.++...|++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHccCcc
Q 006562          536 AEEAHLKAIQLDRN  549 (640)
Q Consensus       536 A~~~~~~a~~~~~~  549 (640)
                      |++.+++++++.|+
T Consensus       164 A~~~~~kal~l~~~  177 (723)
T 4gyw_A          164 YDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChh
Confidence            66666665555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.86  E-value=8.4e-21  Score=204.89  Aligned_cols=173  Identities=17%  Similarity=0.217  Sum_probs=168.4

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562          410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER  489 (640)
Q Consensus       410 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  489 (640)
                      ..|+++.++.++|.++..+|++++|+.+|+++++++|++..++..+|.+|..+|++++|+..|+++++++|++..++..+
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHH
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK  569 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  569 (640)
                      |.++..+|++++|+..|+++++++|++..++.++|.++..+|++++|+..|+++++++|+++.++.++|.++..+|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 006562          570 ALECLQQVLYIDK  582 (640)
Q Consensus       570 A~~~~~~al~~~~  582 (640)
                      |++.+++++++.|
T Consensus       164 A~~~~~kal~l~~  176 (723)
T 4gyw_A          164 YDERMKKLVSIVA  176 (723)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCh
Confidence            9999999988755

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.86  E-value=2e-20  Score=190.02  Aligned_cols=235  Identities=14%  Similarity=0.134  Sum_probs=203.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKE---DPM---YPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-------  447 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------  447 (640)
                      ...++.+|..++..|++++|+..|+++++.   .++   .+.++..+|.++...|++++|+.++.++++..+.       
T Consensus       103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            346677999999999999999999999986   233   4688999999999999999999999999987543       


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hC-CC
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVK-----LD-KE  515 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~-~~  515 (640)
                      ...++..+|.+|...|++++|+.++++++.+.+..      ..++..+|.++...|++++|+.++++++.     .+ |.
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~  262 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS  262 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence            24588999999999999999999999999886543      24889999999999999999999999999     45 77


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCChHH
Q 006562          516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKA  587 (640)
Q Consensus       516 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~  587 (640)
                      ...++..+|.++...|++++|+.++++++...     |.....+..+|.++...|+   +++|+.++++. ...|....+
T Consensus       263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~  341 (383)
T 3ulq_A          263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDF  341 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHH
Confidence            78999999999999999999999999999874     4344456789999999999   88888888776 334455678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhccCC
Q 006562          588 YHLRGLLLHGLGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~al~~~p  616 (640)
                      +..+|.+|...|++++|..+|++++++..
T Consensus       342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~  370 (383)
T 3ulq_A          342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ  370 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999987643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.86  E-value=3.4e-20  Score=191.79  Aligned_cols=234  Identities=12%  Similarity=0.033  Sum_probs=195.0

Q ss_pred             HHHHHHHHHHHHcCChHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCcHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYAS---AISIFDQILKEDPMYPEALIGRGTARAFQRELEA----AISDFTEAIQSNPSAGEAWKR  454 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~---A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~  454 (640)
                      ..++.+|.+|...+...+   +...+.++..  +.++.+++.+|.+|...+.+++    +..+++.+...+|   .+++.
T Consensus       107 ~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~  181 (452)
T 3e4b_A          107 NTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVE  181 (452)
T ss_dssp             SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHH
Confidence            356677777777665444   4444444443  3457899999999999985544    4445555544444   49999


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-
Q 006562          455 RGQARAALG---ESVEAIQDLSKALEFEPNSADILHERGIVNFKF----KDFNAAVEDLSACVKLDKENKSAYTYLGLA-  526 (640)
Q Consensus       455 la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~la~~-  526 (640)
                      +|.+|...|   ++++|+.+|+++....|.....++.+|.+|...    +++++|+.+|+++.   |.++.+++.+|.+ 
T Consensus       182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~  258 (452)
T 3e4b_A          182 LATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLL  258 (452)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHH
T ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence            999999999   999999999999999999999889999999776    79999999999998   8999999999999 


Q ss_pred             H--HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--
Q 006562          527 L--SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-----NSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--  597 (640)
Q Consensus       527 ~--~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--  597 (640)
                      +  ...+++++|+.+|+++...  .++.+++.+|.+|. .|     ++++|+.+|+++.   +.++.+++.+|.+|..  
T Consensus       259 ~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~  332 (452)
T 3e4b_A          259 YDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGY  332 (452)
T ss_dssp             HHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTT
T ss_pred             HhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCC
Confidence            4  4689999999999999865  47999999999998 66     9999999999998   8999999999999987  


Q ss_pred             --cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Q 006562          598 --LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA  631 (640)
Q Consensus       598 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  631 (640)
                        ..++++|+.+|+++.+.  .++.+.+.+|.+|..
T Consensus       333 g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~  366 (452)
T 3e4b_A          333 LGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQ  366 (452)
T ss_dssp             TSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHS
T ss_pred             CCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHh
Confidence              45999999999999874  567889999999874

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.86  E-value=4e-20  Score=176.91  Aligned_cols=209  Identities=16%  Similarity=0.055  Sum_probs=118.8

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---H
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA---G  449 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~  449 (640)
                      ..+.++..++.+|..++..|+|++|+..|+++++.+|.+   +.+++.+|.+++..|++++|+..|+++++..|++   +
T Consensus        10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~   89 (261)
T 3qky_A           10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP   89 (261)
T ss_dssp             -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence            455566666666666666666666666666666666666   6666666666666666666666666666665533   4


Q ss_pred             HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          450 EAWKRRGQARAA--------LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYT  521 (640)
Q Consensus       450 ~~~~~la~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  521 (640)
                      .+++.+|.++..        .|++++|+..|++++...|++..+...+..+....+                 .....++
T Consensus        90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~-----------------~~~~~~~  152 (261)
T 3qky_A           90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRA-----------------KLARKQY  152 (261)
T ss_dssp             HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-----------------HHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHH-----------------HHHHHHH
Confidence            556666666666        666666666666666666655443332222211111                 1112245


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcc---cHHHHHHHHHHHHHh----------cCHHHHHHHHHHHHHhCCCChH--
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRN---FLEAWGHLTQFYQDL----------ANSEKALECLQQVLYIDKRFSK--  586 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~--  586 (640)
                      .+|.++...|++++|+..|++++...|+   .+.+++.+|.+|..+          |++++|+..|+++++..|+++.  
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  232 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR  232 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence            5666666666666666666666666555   345566666666554          5555555555555555555532  


Q ss_pred             -HHHHHHHHHHhcCCH
Q 006562          587 -AYHLRGLLLHGLGQH  601 (640)
Q Consensus       587 -~~~~la~~~~~~g~~  601 (640)
                       +...++.++...+++
T Consensus       233 ~a~~~l~~~~~~~~~~  248 (261)
T 3qky_A          233 TAEELYTRARQRLTEL  248 (261)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence             333344444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.85  E-value=6.7e-20  Score=175.39  Aligned_cols=190  Identities=16%  Similarity=0.062  Sum_probs=148.0

Q ss_pred             hhHHHHHhhhhccCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------cc
Q 006562          364 RNKKFCVTRISKSKSIS---VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAF--------QR  429 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~--------~g  429 (640)
                      ......+..++...|.+   +.+++.+|.+++..|++++|+..|+++++..|++   +.+++.+|.++..        .|
T Consensus        32 ~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~  111 (261)
T 3qky_A           32 DRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT  111 (261)
T ss_dssp             HHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH
T ss_pred             HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch
Confidence            34444577777888877   8999999999999999999999999999998854   6789999999999        99


Q ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          430 ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       430 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                      ++++|+..|+++++.+|+++.+...+..+....+.                 ....++.+|.++...|++++|+..|+++
T Consensus       112 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A          112 DTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-----------------LARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999999999987665444333222111                 1233677888888888888888888888


Q ss_pred             HHhCCC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCcccH---HHHHHHHHHHHHhcCHHHH
Q 006562          510 VKLDKE---NKSAYTYLGLALSSI----------GEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKA  570 (640)
Q Consensus       510 l~~~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A  570 (640)
                      +...|+   .+.+++.+|.++..+          |++++|+..|++++...|+++   .+...++.++...++++.+
T Consensus       175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            888777   456788888888766          788888888888888888773   4555666666666666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=2e-18  Score=189.04  Aligned_cols=237  Identities=14%  Similarity=0.120  Sum_probs=154.3

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA  458 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  458 (640)
                      .++..+...|.++...|+|++|+++|..+.+..++ +.+...+|.+|.+.+++++ ++.|.    ..+ +...+..+|..
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~ 1204 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDR 1204 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHH
Confidence            33455555555555555555555555555554432 2222235555555555543 22221    122 22344456666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      +...|+|++|+.+|.++        ..|..++.++.+.|++++|++.++++     .+..+|...+.++...|+|..|..
T Consensus      1205 le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A         1205 CYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred             HHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHH
Confidence            66666666666666654        35556666666666666666666665     345666666666666666666666


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHhhccCC
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p  616 (640)
                      +... +..   +++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+  -++..++++.|...+.+.|
T Consensus      1272 cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A         1272 CGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred             HHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence            5543 222   344556788889999999999999999999999888888888877765  5577888888888888777


Q ss_pred             -----CCHHHHHHHHHHHHHcCCccccc
Q 006562          617 -----SNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       617 -----~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                           .+...|..+..+|.+-|+++.|+
T Consensus      1348 ~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A         1348 VLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred             HhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence                 67888999999999999999886

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.85  E-value=1.8e-20  Score=190.35  Aligned_cols=222  Identities=16%  Similarity=0.107  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQS---NPS---AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A  483 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~  483 (640)
                      .++.+|.++...|++++|+.+++++++.   .++   .+.++..+|.+|...|++++|+.++.+++.+.+..       .
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            3455999999999999999999999987   233   45789999999999999999999999999985443       3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cC-cccH
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LD-RNFL  551 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~-~~~~  551 (640)
                      .++..+|.++...|++++|+.++++++...+..      ..++..+|.++...|++++|+.++++++.     .+ |..+
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            588999999999999999999999999885433      35889999999999999999999999999     46 7789


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCHHHHH
Q 006562          552 EAWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      .++..+|.++...|++++|+.++++++...+     .....+..+|.++...|+   +++|+..+++. ...|....++.
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~  343 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI  343 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence            9999999999999999999999999998743     333346779999999999   88899998887 34445567889


Q ss_pred             HHHHHHHHcCCccccc
Q 006562          624 LRASCYHAIGEYREAV  639 (640)
Q Consensus       624 ~la~~~~~~g~~~~Al  639 (640)
                      .+|.+|..+|++++|+
T Consensus       344 ~la~~y~~~g~~~~A~  359 (383)
T 3ulq_A          344 DVAKYYHERKNFQKAS  359 (383)
T ss_dssp             HHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHH
Confidence            9999999999999985

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.83  E-value=4e-19  Score=179.96  Aligned_cols=234  Identities=15%  Similarity=0.098  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP------MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-------  447 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------  447 (640)
                      ..+++.+|..++..|++++|+..|+++++..+      ..+.++..+|.++...|+++.|+.++.++++..+.       
T Consensus       101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  180 (378)
T 3q15_A          101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR  180 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence            44678899999999999999999999997632      24678999999999999999999999999987543       


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCc
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPN------SADILHERGIVNFKFKDFNAAVEDLSACVK-----LDKEN  516 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~  516 (640)
                      ...++..+|.++...|++++|+.++++++.+.+.      ...++..+|.++...|++++|+.++++++.     .+|..
T Consensus       181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  260 (378)
T 3q15_A          181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL  260 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence            2457889999999999999999999999987432      245788999999999999999999999999     77888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCChHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLAN---SEKALECLQQVLYIDKRFSKAY  588 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~  588 (640)
                      ..++..+|.++...|++++|+.++++++...     |.....+..++.++...++   +.+|+.++++. ...|.....+
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~  339 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA  339 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence            8999999999999999999999999999874     4445566788888888888   88888888763 2334455678


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          589 HLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       589 ~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      ..+|.+|...|++++|..+|+++++..
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~~~  366 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLKAQ  366 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            899999999999999999999998753

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=2.4e-20  Score=183.34  Aligned_cols=229  Identities=15%  Similarity=0.098  Sum_probs=188.0

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 006562          411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE---  479 (640)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---  479 (640)
                      +|..+.++..+|.++...|++++|+.+++++++.        .|....++..+|.++...|++++|+.++++++...   
T Consensus        23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            4566789999999999999999999999999985        56677899999999999999999999999999873   


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q 006562          480 -----PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD--------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL  546 (640)
Q Consensus       480 -----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  546 (640)
                           |....++..+|.++...|++++|+.++++++...        |....++..+|.++...|++++|+.++++++..
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~  182 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI  182 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                 4456789999999999999999999999999874        555788999999999999999999999999988


Q ss_pred             --------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---------C------hHHHHHHHHHHHhcCCHHH
Q 006562          547 --------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---------F------SKAYHLRGLLLHGLGQHKK  603 (640)
Q Consensus       547 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---------~------~~~~~~la~~~~~~g~~~~  603 (640)
                              .|....++..+|.++...|++++|+.++++++...|.         .      ...+...+..+...+.+.+
T Consensus       183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (311)
T 3nf1_A          183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE  262 (311)
T ss_dssp             HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence                    6777889999999999999999999999999976432         2      2234444555566777788


Q ss_pred             HHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       604 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      |...+.++....|....++..+|.+|..+|++++|+
T Consensus       263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  298 (311)
T 3nf1_A          263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE  298 (311)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH
Confidence            888999999889999999999999999999999985

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.83  E-value=1.6e-19  Score=175.64  Aligned_cols=220  Identities=17%  Similarity=0.127  Sum_probs=171.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 006562          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEAWKRRGQARAALGESVEAI  469 (640)
Q Consensus       396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~A~  469 (640)
                      ++++|+..|.++              |.+|...|++++|+..|.+++...+.      .+.++..+|.+|...|++++|+
T Consensus        32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~   97 (292)
T 1qqe_A           32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV   97 (292)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            478888888776              55677888888888888888876432      2567888888888888888888


Q ss_pred             HHHHHHHHhCCCC------HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHH
Q 006562          470 QDLSKALEFEPNS------ADILHERGIVNFKF-KDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       470 ~~~~~al~~~p~~------~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A  536 (640)
                      .+|++++.+.|..      ..++..+|.+|... |++++|+.+|++++.+.|..      ..++..+|.++..+|++++|
T Consensus        98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  177 (292)
T 1qqe_A           98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA  177 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence            8888888876643      45788889999985 99999999999999887654      45788889999999999999


Q ss_pred             HHHHHHHHccCcccHH-------HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH-----HHHHHHHHH--hcCCHH
Q 006562          537 EEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA-----YHLRGLLLH--GLGQHK  602 (640)
Q Consensus       537 ~~~~~~a~~~~~~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----~~~la~~~~--~~g~~~  602 (640)
                      +.+|++++...|.+..       ++..+|.++..+|++++|+.+|++++.++|+....     +..++..+.  ..++++
T Consensus       178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~  257 (292)
T 1qqe_A          178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS  257 (292)
T ss_dssp             HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred             HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999988876532       67889999999999999999999999988876543     344555554  467899


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          603 KAIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      +|+..|++++.++|....++..+-...
T Consensus       258 ~A~~~~~~~~~l~~~~~~~~~~~k~~~  284 (292)
T 1qqe_A          258 EHCKEFDNFMRLDKWKITILNKIKESI  284 (292)
T ss_dssp             HHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccHHHHHHHHHHHHHHh
Confidence            999999999999998777776665554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=2e-19  Score=195.63  Aligned_cols=188  Identities=11%  Similarity=-0.078  Sum_probs=176.4

Q ss_pred             ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQIL--------KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP  446 (640)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  446 (640)
                      ..+|.++..++..|   ...|++++|+..|++++        +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            45677777777766   78999999999999999        89999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (640)
Q Consensus       447 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (640)
                      ++..+++.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++ +..|+++++.+|++..+++.+|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                      +...|++++|+..|+++++.+|++..++.++|.++...++
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999977665

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.82  E-value=1.2e-19  Score=197.33  Aligned_cols=188  Identities=13%  Similarity=0.056  Sum_probs=176.9

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAI--------QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP  480 (640)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  480 (640)
                      ..+|+++.+++..+   ...|++++|+..+++++        +.+|++..++..+|.++...|++++|+..|+++++.+|
T Consensus       388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p  464 (681)
T 2pzi_A          388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG  464 (681)
T ss_dssp             CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence            35788888887777   78899999999999999        89999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (640)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  560 (640)
                      ++..+++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++ +..|+++++.+|+++.+++++|.+
T Consensus       465 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~  543 (681)
T 2pzi_A          465 WRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARA  543 (681)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q 006562          561 YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (640)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (640)
                      +..+|++++|+..|+++++.+|++..++..+|.++...++
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            9999999999999999999999999999999999977665

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.82  E-value=2.6e-17  Score=158.58  Aligned_cols=241  Identities=17%  Similarity=0.139  Sum_probs=214.4

Q ss_pred             HHHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          389 IAQVNEGKYA-SAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       389 ~~~~~~g~~~-~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      ......|++. +|+..+.+++..+|++..+|...+.+....+.          +++++.++..++..+|.+..+|...+.
T Consensus        37 ~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           37 FQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3345677776 89999999999999999999999999988876          789999999999999999999999999


Q ss_pred             HHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----
Q 006562          458 ARAALGE--SVEAIQDLSKALEFEPNSADILHERGIVNFKFKD-FNAAVEDLSACVKLDKENKSAYTYLGLALSSI----  530 (640)
Q Consensus       458 ~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~----  530 (640)
                      ++...+.  +++++.++.++++.+|.+..+|...+.+....|. +++++.++.+++..+|.+..+|..++.++...    
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            9999994  8999999999999999999999999999999998 69999999999999999999999999999887    


Q ss_pred             ----------CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHhCCCChHHHH
Q 006562          531 ----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL-----------ANSEKALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       531 ----------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~  589 (640)
                                +.+++++.++.+++..+|++..+|+.+..++...           +.++++++.++++++..|++...+.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence                      5689999999999999999999998777666655           5689999999999999999976666


Q ss_pred             HHHHHHH---hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          590 LRGLLLH---GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       590 ~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      .++.+..   ..|..++...++.+.++++|.....|..++.-+
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            5554433   367889999999999999999887776665544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.81  E-value=4.1e-17  Score=178.87  Aligned_cols=219  Identities=16%  Similarity=0.114  Sum_probs=166.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...+...|..+...|+|++|+.+|.++        ..|..+|.++...|++++|++.++++     .+..+|...+.++.
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACV 1261 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHh
Confidence            345567888888888888888888885        46788888888888888888888887     45678888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~  538 (640)
                      ..|+|..|..+... +..   +++.+..++..|...|.+++|+.+++.++.+++.+...+..+|.++.+  -++..++++
T Consensus      1262 e~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred             hhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence            88888888887764 333   345556788888888888888888888888888888888777777766  456777788


Q ss_pred             HHHHHHccCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHhcCCH
Q 006562          539 AHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYI------------DKRFSKAYHLRGLLLHGLGQH  601 (640)
Q Consensus       539 ~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------~~~~~~~~~~la~~~~~~g~~  601 (640)
                      .|...+.+.|     .....|..+..+|.+-|+++.|+..+-.....            .+.+++.++.....|.  +..
T Consensus      1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl--~~~ 1415 (1630)
T 1xi4_A         1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFK 1415 (1630)
T ss_pred             HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHH--hhC
Confidence            8887777766     66778888888888888888888666544322            3466777777777776  566


Q ss_pred             HHHHHHHHHhh--ccCCCC
Q 006562          602 KKAIKDLSSGL--GIDPSN  618 (640)
Q Consensus       602 ~~A~~~~~~al--~~~p~~  618 (640)
                      ..++..+..++  .++++.
T Consensus      1416 P~~lndLl~~l~~rlD~~R 1434 (1630)
T 1xi4_A         1416 PLLLNDLLMVLSPRLDHTR 1434 (1630)
T ss_pred             hHHHHHHHHHhhhcCChHH
Confidence            77788887777  444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.81  E-value=1.1e-18  Score=160.34  Aligned_cols=184  Identities=20%  Similarity=0.065  Sum_probs=82.0

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      +++.++..|..++..|++++|+..|+++++.+|+++.+++..+..     ..             ....+.....+|.++
T Consensus         3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-----~~-------------~~~~~~~~~~lg~~~   64 (208)
T 3urz_A            3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVD-----KN-------------SEISSKLATELALAY   64 (208)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSC-----TT-------------SHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhc-----ch-------------hhhhHHHHHHHHHHH
Confidence            345556666666666666666666666666666665555551100     00             000011122244444


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC--HHHHH
Q 006562          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAE  537 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~--~~~A~  537 (640)
                      ...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|+  ...+.
T Consensus        65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~  144 (208)
T 3urz_A           65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE  144 (208)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444444444444444444443332  22233


Q ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q 006562          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK  582 (640)
Q Consensus       538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  582 (640)
                      ..+.+++...|. ..+++.+|.++...|++++|+..|+++++++|
T Consensus       145 ~~~~~~~~~~~~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          145 TDYKKLSSPTKM-QYARYRDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHC---CCCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhCCCch-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            333333322211 12333444444444444444444444444444

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.81  E-value=1.5e-18  Score=159.36  Aligned_cols=166  Identities=14%  Similarity=0.067  Sum_probs=97.3

Q ss_pred             hHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 006562          365 NKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS  444 (640)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  444 (640)
                      .....+..++..+|.++..++..+.     ....             ...+.....+|.++...|++++|+..|+++++.
T Consensus        22 ~A~~~~~~al~~~p~~~~~~~~~~~-----~~~~-------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A           22 QAVSYFRQTIALNIDRTEMYYWTNV-----DKNS-------------EISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHS-----CTTS-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHhhh-----cchh-------------hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            3444567777888888888776221     0000             001233445666666666666666666666666


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD--FNAAVEDLSACVKLDKENKSAYTY  522 (640)
Q Consensus       445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~  522 (640)
                      +|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.+++..|+  ...+...+.+++...| ...+++.
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~  162 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYR  162 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHH
Confidence            666666666666666666666666666666666666666666666666655443  3344555555443222 1234556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      +|.++...|++++|+..|++++..+|+
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            666666677777777777777777665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=1.9e-18  Score=155.43  Aligned_cols=169  Identities=15%  Similarity=0.239  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+.+++++++..|.++.++..+|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (640)
                      ..|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|...+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            66666666666666666655555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHccCcc
Q 006562          541 LKAIQLDRN  549 (640)
Q Consensus       541 ~~a~~~~~~  549 (640)
                      ++++...|+
T Consensus       168 ~~~~~~~~~  176 (186)
T 3as5_A          168 KKANELDEG  176 (186)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHcCCC
Confidence            555555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.81  E-value=5.9e-20  Score=158.90  Aligned_cols=146  Identities=15%  Similarity=0.134  Sum_probs=91.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (640)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  568 (640)
                      ||.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|++++..+|+++.+|..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            45555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHH-HHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          569 KALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD-LSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       569 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      +|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            666666666666666666666666666666666554443 466666666666666666666665554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.81  E-value=2.7e-18  Score=154.48  Aligned_cols=168  Identities=17%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (640)
                      ..+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562          496 FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQ  575 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (640)
                      .|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.+++
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHhCCC
Q 006562          576 QVLYIDKR  583 (640)
Q Consensus       576 ~al~~~~~  583 (640)
                      +++...|+
T Consensus       169 ~~~~~~~~  176 (186)
T 3as5_A          169 KANELDEG  176 (186)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHcCCC
Confidence            55554443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.81  E-value=1.6e-17  Score=159.41  Aligned_cols=226  Identities=11%  Similarity=0.044  Sum_probs=210.2

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHH
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEG--KYASAISIFDQILKEDPMYPEALIGRGTAR----AFQ---RELEAAISDFT  439 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~la~~~----~~~---g~~~~A~~~~~  439 (640)
                      ....++..+|....+|..++.++...|  ++++++..++.++..+|.+..+|..++.++    ...   +++++++.++.
T Consensus        55 ~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~  134 (306)
T 3dra_A           55 ITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILE  134 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            567788899999999999999999999  999999999999999999999999999999    666   78999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHH
Q 006562          440 EAIQSNPSAGEAWKRRGQARAALGESV--EAIQDLSKALEFEPNSADILHERGIVNFKFKD------FNAAVEDLSACVK  511 (640)
Q Consensus       440 ~al~~~p~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------~~~A~~~~~~al~  511 (640)
                      ++++.+|.+..+|...+.+....|.++  +++..+.++++.+|.+..+|...+.++...+.      ++++++++.+++.
T Consensus       135 ~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~  214 (306)
T 3dra_A          135 AMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV  214 (306)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH
Confidence            999999999999999999999999998  99999999999999999999999999999987      9999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCChH
Q 006562          512 LDKENKSAYTYLGLALSSIGEYKK-AEEAHLKAIQLD---RNFLEAWGHLTQFYQDLANSEKALECLQQVLY-IDKRFSK  586 (640)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~  586 (640)
                      .+|++..+|..++.++...|+... ....+.+++...   |.++.++..++.++.+.|+.++|+++|+.+.+ .+|-...
T Consensus       215 ~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~  294 (306)
T 3dra_A          215 KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSN  294 (306)
T ss_dssp             HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred             hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHH
Confidence            999999999999999999998555 455777777766   88899999999999999999999999999997 7999888


Q ss_pred             HHHHHHHH
Q 006562          587 AYHLRGLL  594 (640)
Q Consensus       587 ~~~~la~~  594 (640)
                      .|...+..
T Consensus       295 yW~~~~~~  302 (306)
T 3dra_A          295 FWDYQISK  302 (306)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            88877653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.80  E-value=7.6e-18  Score=170.33  Aligned_cols=259  Identities=15%  Similarity=0.084  Sum_probs=202.8

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----EALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G  449 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  449 (640)
                      ...+..+|..++..|++++|+..+++++...|...     .++..+|.++...|++++|...+++++...|..      .
T Consensus        14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   93 (373)
T 1hz4_A           14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   93 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            45667788888999999999999999998876542     267788899999999999999999998765532      2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----c
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFE--------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----N  516 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----~  516 (640)
                      .++..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+.     .
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            346778999999999999999999998764        223456778899999999999999999999988764     2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc--cHHHH-----HHHHHHHHHhcCHHHHHHHHHHHHHhCCCC----h
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAW-----GHLTQFYQDLANSEKALECLQQVLYIDKRF----S  585 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~-----~~la~~~~~~g~~~~A~~~~~~al~~~~~~----~  585 (640)
                      ..++..+|.++...|++++|...+++++...+.  .+..+     ...+.++...|++++|...+++++...|..    .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            467788899999999999999999998876322  21111     134455778999999999999988766543    2


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC------CHHHHHHHHHHHHHcCCccccc
Q 006562          586 KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS------NIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      ..+..+|.++...|++++|...+++++...+.      ...++..++.++...|++++|.
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  313 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ  313 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH
Confidence            35678899999999999999999988876432      1257788899999999988774

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.80  E-value=1.3e-19  Score=156.62  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=71.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (640)
                      ||.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.++...|+++
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            34444444455555555555554444444444455555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC-LQQVLYIDKRFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~~~~~~~~~~la~~~~~~g  599 (640)
                      +|+..|+++++++|+++.++..+|.++...|++++|... ++++++++|+++.++..++.++...|
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            555555555555555555555555555555555443332 34555555555555555555554444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.80  E-value=9.4e-17  Score=162.26  Aligned_cols=230  Identities=17%  Similarity=0.050  Sum_probs=177.5

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----c
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKED--------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS-----A  448 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~  448 (640)
                      ..+..+|.++...|++++|+..+++++...        |....++..+|.++...|++++|..++++++...+.     .
T Consensus        94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  173 (373)
T 1hz4_A           94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ  173 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence            445678889999999999999999998764        334567788999999999999999999999988765     2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----H
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--S-ADIL----HERGIVNFKFKDFNAAVEDLSACVKLDKEN----K  517 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~-~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~~~~----~  517 (640)
                      ..++..+|.++...|++++|...+++++...+.  . ....    ...+.++...|++++|...+++++...|..    .
T Consensus       174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  253 (373)
T 1hz4_A          174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ  253 (373)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence            457888999999999999999999999876432  2 1111    134456788999999999999998776543    3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHH
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLR  591 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  591 (640)
                      ..+..++.++...|++++|...+++++...+.      ...++..+|.++...|++++|...+++++...+..     ..
T Consensus       254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~  328 (373)
T 1hz4_A          254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GF  328 (373)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cH
Confidence            45678899999999999999999998876443      23577888999999999999999999998765421     11


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          592 GLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      ...+...|  +.....+++.+...|.+
T Consensus       329 ~~~~~~~g--~~~~~ll~~~~~~~~~~  353 (373)
T 1hz4_A          329 ISHFVIEG--EAMAQQLRQLIQLNTLP  353 (373)
T ss_dssp             CHHHHTTH--HHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHcc--HHHHHHHHHHHhCCCCc
Confidence            22333444  56777788888877753

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.79  E-value=7.3e-19  Score=170.00  Aligned_cols=224  Identities=14%  Similarity=0.078  Sum_probs=181.2

Q ss_pred             HHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 006562          392 VNEGKYASAISIFDQILKE--------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------PSAGEAWKRR  455 (640)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l  455 (640)
                      ...|++++|+.+|+++++.        .|..+.++..+|.++...|++++|+.++++++...        |....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            4568888888888888873        25567889999999999999999999999999873        5567789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCcHHH
Q 006562          456 GQARAALGESVEAIQDLSKALEF--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------DKENKSA  519 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~  519 (640)
                      |.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++..        .|....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999988        3556778999999999999999999999999998        6667789


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccC---------cccHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHhCCCC
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLD---------RNFLEAWGHLTQFYQDLAN------SEKALECLQQVLYIDKRF  584 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~---------~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~  584 (640)
                      +..+|.++...|++++|+..+++++...         +.....+..++..+...+.      +..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            9999999999999999999999999863         3345566677766665444      333334444333344566


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      +.++..+|.++...|++++|+.+|+++++..
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            7789999999999999999999999998753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.79  E-value=5.4e-18  Score=171.63  Aligned_cols=222  Identities=15%  Similarity=0.140  Sum_probs=191.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------A  483 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~  483 (640)
                      .++.+|..+...|++++|+.+|++++...+      ..+.++..+|.+|...|+++.|+.++++++...+..       .
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            577899999999999999999999997642      245689999999999999999999999999875532       4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCcccHH
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ-----LDRNFLE  552 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~-----~~~~~~~  552 (640)
                      .++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+.++++++.     .+|..+.
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            47889999999999999999999999987431      246788999999999999999999999999     7888899


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCC---HHHHHHHHHHhhccCCCCHHHHHH
Q 006562          553 AWGHLTQFYQDLANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQ---HKKAIKDLSSGLGIDPSNIECLYL  624 (640)
Q Consensus       553 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~  624 (640)
                      ++..+|.++...|++++|+.++++++...+     .....+..++.++...|+   +.+|+.++++. ...|....++..
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~  341 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS  341 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence            999999999999999999999999999854     334566778888888998   88999988873 333445578889


Q ss_pred             HHHHHHHcCCccccc
Q 006562          625 RASCYHAIGEYREAV  639 (640)
Q Consensus       625 la~~~~~~g~~~~Al  639 (640)
                      +|.+|...|++++|+
T Consensus       342 la~~y~~~g~~~~A~  356 (378)
T 3q15_A          342 AAAVFESSCHFEQAA  356 (378)
T ss_dssp             HHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHH
Confidence            999999999999985

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.79  E-value=2.4e-18  Score=167.29  Aligned_cols=214  Identities=12%  Similarity=0.005  Sum_probs=175.3

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------H
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPM------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------G  449 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~  449 (640)
                      ..+...|.++...|++++|+..|.+++...+.      .+.++..+|.+|...|++++|+.+|++++++.|..      .
T Consensus        38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a  117 (292)
T 1qqe_A           38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            34555678889999999999999999987432      25789999999999999999999999999987643      4


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH----
Q 006562          450 EAWKRRGQARAAL-GESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----  518 (640)
Q Consensus       450 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----  518 (640)
                      .++..+|.+|... |++++|+.+|++++++.|..      ..++..+|.++..+|++++|+.+|++++...|++..    
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            6888999999996 99999999999999998754      457889999999999999999999999999887643    


Q ss_pred             ---HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH-----HHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCChHHH
Q 006562          519 ---AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-----WGHLTQFYQ--DLANSEKALECLQQVLYIDKRFSKAY  588 (640)
Q Consensus       519 ---~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~la~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~  588 (640)
                         ++..+|.++..+|++++|+..|++++.++|.....     +..++..+.  ..+++++|+..|++++.++|.....+
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~  277 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL  277 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence               67889999999999999999999999999987553     344555554  45779999999999988888766665


Q ss_pred             HHHHHHH
Q 006562          589 HLRGLLL  595 (640)
Q Consensus       589 ~~la~~~  595 (640)
                      ..+-...
T Consensus       278 ~~~k~~~  284 (292)
T 1qqe_A          278 NKIKESI  284 (292)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.79  E-value=1e-17  Score=156.04  Aligned_cols=207  Identities=13%  Similarity=0.056  Sum_probs=158.2

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHH---HHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGE---AWK  453 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~  453 (640)
                      ++..++.+|..++..|++++|+..|++++...|.+   ..+++.+|.++...|++++|+..|+++++.+|+++.   +++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            56778889999999999999999999999988876   468889999999999999999999999999888754   788


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (640)
                      .+|.++...+..                ....+..++..+...|++++|+..|+++++..|+++.++..+..+....   
T Consensus        83 ~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~---  143 (225)
T 2yhc_A           83 MRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK---  143 (225)
T ss_dssp             HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH---
T ss_pred             HHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH---
Confidence            888888776532                1223445677777889999999999999999999876544322221111   


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS---KAYHLRGLLLHGLGQHKKAIKDLSS  610 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~  610 (640)
                                    .........+|.+|...|++++|+..|+++++..|+++   .++..+|.++..+|++++|+..+++
T Consensus       144 --------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          144 --------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             --------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence                          11123446789999999999999999999999999876   6799999999999999999999999


Q ss_pred             hhccCCCCH
Q 006562          611 GLGIDPSNI  619 (640)
Q Consensus       611 al~~~p~~~  619 (640)
                      +....|++.
T Consensus       210 l~~~~~~~~  218 (225)
T 2yhc_A          210 IAANSSNTL  218 (225)
T ss_dssp             HHHCCSCCC
T ss_pred             HHhhCCCch
Confidence            988888753

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.78  E-value=2.1e-17  Score=153.83  Aligned_cols=189  Identities=12%  Similarity=0.064  Sum_probs=135.5

Q ss_pred             hhHHHHHhhhhccCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHH
Q 006562          364 RNKKFCVTRISKSKSIS---VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE---ALIGRGTARAFQRELEAAISD  437 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~la~~~~~~g~~~~A~~~  437 (640)
                      ......+..+....|.+   ..+++.+|.+++..|++++|+..|+++++.+|+++.   +++.+|.++...|..      
T Consensus        21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~------   94 (225)
T 2yhc_A           21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS------   94 (225)
T ss_dssp             HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh------
Confidence            33444566666655554   578999999999999999999999999999999864   889999999887642      


Q ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562          438 FTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (640)
Q Consensus       438 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (640)
                                ....+..++..+...|++++|+..|+++++..|+++.++..+..+....+                 ...
T Consensus        95 ----------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~  147 (225)
T 2yhc_A           95 ----------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLA  147 (225)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHH
T ss_pred             ----------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHH
Confidence                      11234456777777888999999999999999988655433222111110                 112


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFL---EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  585 (640)
                      ...+.+|.++...|++++|+..|++++...|+++   .++..+|.++..+|++++|+..++++....|++.
T Consensus       148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~  218 (225)
T 2yhc_A          148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL  218 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence            2345678888889999999999999998888775   6788899999999999999999988888777653

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.77  E-value=1.2e-16  Score=154.48  Aligned_cols=239  Identities=15%  Similarity=0.087  Sum_probs=209.0

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-C-CHH
Q 006562          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL-G-ESV  466 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-~-~~~  466 (640)
                      .....+..++|+..+.+++..+|++..+|..++.++...| .+++++..+.+++..+|++..+|...+.++... + +++
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            3444556679999999999999999999999999999999 599999999999999999999999999999998 8 899


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------
Q 006562          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFN--------AAVEDLSACVKLDKENKSAYTYLGLALSSIGE------  532 (640)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~------  532 (640)
                      +++..+.++++.+|.+..+|...+.++...|.++        ++++++.++++.+|.+..+|..++.++...+.      
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence            9999999999999999999999999999998887        99999999999999999999999999999887      


Q ss_pred             -HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCH--------------------HHHHHHHHHHHHhC------CCCh
Q 006562          533 -YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANS--------------------EKALECLQQVLYID------KRFS  585 (640)
Q Consensus       533 -~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al~~~------~~~~  585 (640)
                       +++++.++.+++..+|++..+|.++..++...|+.                    ..-...+...+...      +.++
T Consensus       223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  302 (349)
T 3q7a_A          223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP  302 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence             79999999999999999999999999999887764                    22222222222222      4678


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhh-ccCCCCHHHHHHHHHH
Q 006562          586 KAYHLRGLLLHGLGQHKKAIKDLSSGL-GIDPSNIECLYLRASC  628 (640)
Q Consensus       586 ~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~  628 (640)
                      .++..++.+|...|+.++|.+.++... +.+|-....|...+..
T Consensus       303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            899999999999999999999999987 7899888888766654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=1.3e-18  Score=171.69  Aligned_cols=176  Identities=16%  Similarity=0.161  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      .+...|..++..|.|++|+.+|.++        ..|..+|.++.++|++++|++.++++     .++.+|...+.++...
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~  190 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDG  190 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHc
Confidence            5556666777777777777777655        34666677777777777777777766     3566666666677777


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--cCCHHHHHHHH
Q 006562          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS--IGEYKKAEEAH  540 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~  540 (640)
                      |+++.|..+... +..   +++-...++.+|.+.|++++|+.++++++.+++....++..+|.+|.+  -++..+.++.|
T Consensus       191 ~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~  266 (449)
T 1b89_A          191 KEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF  266 (449)
T ss_dssp             TCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            777777555543 222   233344566666777777777777777777776666666666666655  34555556666


Q ss_pred             HHHHccCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562          541 LKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQ  575 (640)
Q Consensus       541 ~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (640)
                      ...+.+.|     ..+..|..+..+|...++++.|+..+-
T Consensus       267 ~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~  306 (449)
T 1b89_A          267 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM  306 (449)
T ss_dssp             STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            55555555     555666666677777777776665443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.76  E-value=3.3e-17  Score=158.30  Aligned_cols=231  Identities=12%  Similarity=0.044  Sum_probs=185.3

Q ss_pred             CCCCCCchHHHHHhhHHHhhhhHHHHHHHHhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---
Q 006562          334 SDNKSSDSTESRSKLSFKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKE---  410 (640)
Q Consensus       334 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~---  410 (640)
                      ..++++.|+..+.+....+..                 ......|..+..+..+|.++...|++++|+..|+++++.   
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~-----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~   75 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEK-----------------TSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK   75 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHH-----------------HHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHH-----------------hcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            466788888777765543321                 112234667889999999999999999999999999987   


Q ss_pred             -----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          411 -----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQS--------NPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       411 -----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                           .|....++..+|.++...|++++|+.++++++..        .|....++..+|.++...|++++|+.++++++.
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  155 (283)
T 3edt_B           76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE  155 (283)
T ss_dssp             HTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                 3556788999999999999999999999999988        466678999999999999999999999999999


Q ss_pred             h--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCC------HH
Q 006562          478 F--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL---------DKENKSAYTYLGLALSSIGE------YK  534 (640)
Q Consensus       478 ~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~la~~~~~~g~------~~  534 (640)
                      .        .|....++..+|.++...|++++|+.++++++..         .+.....+..++..+...+.      +.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (283)
T 3edt_B          156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYG  235 (283)
T ss_dssp             HHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-----
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            8        6666788999999999999999999999999987         34445667777776665443      44


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYID  581 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  581 (640)
                      .+...+.......|..+.++..+|.++...|++++|+.+++++++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          236 EYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             -------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            55555555555567778899999999999999999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.75  E-value=9.5e-19  Score=172.74  Aligned_cols=203  Identities=16%  Similarity=0.124  Sum_probs=145.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGE  464 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  464 (640)
                      ..++.+|.+.|++.++.++++     .|+ ..+|..+|..+...|.|++|..+|.++        ..|..+|.++.++|+
T Consensus        98 ~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~  163 (449)
T 1b89_A           98 TELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE  163 (449)
T ss_dssp             -----------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence            356788888999999888875     243 459999999999999999999999976        367789999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          465 SVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (640)
Q Consensus       465 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  544 (640)
                      +++|++.++++     .++.+|...+.++...|+++.|..+... +..+|   .-...+...|...|++++|+.++++++
T Consensus       164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999998     4788999999999999999999777665 22444   344568888999999999999999999


Q ss_pred             ccCcccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          545 QLDRNFLEAWGHLTQFYQD--LANSEKALECLQQVLYIDK-----RFSKAYHLRGLLLHGLGQHKKAIKDLSS  610 (640)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~  610 (640)
                      ..++.....+..+|.+|.+  .++..+.++.|...+.+.|     ..+..|..+..+|...++++.|+..+-.
T Consensus       235 ~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~  307 (449)
T 1b89_A          235 GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN  307 (449)
T ss_dssp             TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHh
Confidence            9999999999999888865  4667777777777776666     6778899999999999999999886654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=2.1e-17  Score=137.78  Aligned_cols=118  Identities=20%  Similarity=0.247  Sum_probs=85.2

Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562          511 KLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (640)
Q Consensus       511 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (640)
                      .++|+....+..+|..++..|++++|+..|++++..+|.++.+|..+|.++..+|++++|+..|+++++++|+++.+|+.
T Consensus         7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~   86 (126)
T 4gco_A            7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR   86 (126)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            45666666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (640)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (640)
                      +|.++..+|++++|+..|+++++++|++.+++..++.+
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            77777777777777777777777777777777766655

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.74  E-value=6.2e-17  Score=134.93  Aligned_cols=119  Identities=16%  Similarity=0.221  Sum_probs=89.5

Q ss_pred             hccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHH
Q 006562          374 SKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK  453 (640)
Q Consensus       374 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  453 (640)
                      ...+|..+..+..+|..++..|+|++|+..|+++++.+|.++.++..+|.++..+|++++|+..|+++++++|+++.+++
T Consensus         6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            34566667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      .+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            777777777777777777777777777777777766654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.73  E-value=1.9e-17  Score=147.65  Aligned_cols=160  Identities=11%  Similarity=0.020  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hc
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KF  496 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~  496 (640)
                      ++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...| ++..+..++.+.. ..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh
Confidence            333444444444444444444444444444444444444444444444444444444444444 3333222222211 11


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHH
Q 006562          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECL  574 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~  574 (640)
                      +....|+..++++++.+|+++.+++.+|.++...|++++|+..|++++..+|..  +.++..+|.++...|+.++|+..|
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            122234444445555555555555555555555555555555555555444433  334444555555555555555554


Q ss_pred             HHHH
Q 006562          575 QQVL  578 (640)
Q Consensus       575 ~~al  578 (640)
                      ++++
T Consensus       168 ~~al  171 (176)
T 2r5s_A          168 RRQL  171 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.73  E-value=1.6e-17  Score=148.21  Aligned_cols=167  Identities=11%  Similarity=0.067  Sum_probs=149.0

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      |...+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++...| ++..+..++.
T Consensus         3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~   81 (176)
T 2r5s_A            3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK   81 (176)
T ss_dssp             ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence            334556788999999999999999999999999999999999999999999999999999999999999 8777666665


Q ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCCHH
Q 006562          458 ARA-ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       458 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~  534 (640)
                      +.. ..+...+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+.  +.++..+|.++...|+.+
T Consensus        82 ~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A           82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             HHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence            533 33344568999999999999999999999999999999999999999999999875  669999999999999999


Q ss_pred             HHHHHHHHHHc
Q 006562          535 KAEEAHLKAIQ  545 (640)
Q Consensus       535 ~A~~~~~~a~~  545 (640)
                      +|+..|++++.
T Consensus       162 ~A~~~y~~al~  172 (176)
T 2r5s_A          162 AIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999998874

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=1.9e-16  Score=153.17  Aligned_cols=167  Identities=16%  Similarity=0.086  Sum_probs=78.9

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 006562          412 PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI  491 (640)
Q Consensus       412 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~  491 (640)
                      |.+...++.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+.
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444433333333333


Q ss_pred             HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHH
Q 006562          492 VNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEK  569 (640)
Q Consensus       492 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~  569 (640)
                      .+...++.+.|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++  ..++..++.++...|+.++
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence            34444444444444444444444444444444444444444444444444444444444  4444444444444444444


Q ss_pred             HHHHHHHHH
Q 006562          570 ALECLQQVL  578 (640)
Q Consensus       570 A~~~~~~al  578 (640)
                      |+..|++++
T Consensus       274 a~~~~r~al  282 (287)
T 3qou_A          274 LASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            444444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.72  E-value=8.6e-17  Score=157.45  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=106.3

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNPSA------GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHER  489 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l  489 (640)
                      |.+|...|++++|+..|.+++...+..      ..++..+|.+|...|++++|+.+|++++.+.+..      ..++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            556667777777777777777664321      3466667777777777777777777777664321      3456667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc------HHHHHHH
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF------LEAWGHL  557 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~l  557 (640)
                      |.+|.. |++++|+.+|++++.+.|..      ..++..+|.++..+|++++|+.+|++++.+.|..      ..++..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            777766 77777777777777665432      3566667777777777777777777777665433      2355666


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          558 TQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       558 a~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      |.++..+|++++|+.+|++++ .+|..
T Consensus       202 g~~~~~~g~~~~A~~~~~~al-~~p~~  227 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY-SIPGF  227 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT-TSTTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHh-CCCCC
Confidence            667777777777777777777 66644

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.72  E-value=2.5e-16  Score=152.27  Aligned_cols=169  Identities=13%  Similarity=0.034  Sum_probs=160.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (640)
Q Consensus       445 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (640)
                      .|.+...+..+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|+........+
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            48889999999999999999999999999999999999999999999999999999999999999999998777777788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHhcCCHH
Q 006562          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--SKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~la~~~~~~g~~~  602 (640)
                      ..+...++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++  ..++..++.++...|+.+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            888899999999999999999999999999999999999999999999999999999988  889999999999999999


Q ss_pred             HHHHHHHHhhc
Q 006562          603 KAIKDLSSGLG  613 (640)
Q Consensus       603 ~A~~~~~~al~  613 (640)
                      +|...|++++.
T Consensus       273 ~a~~~~r~al~  283 (287)
T 3qou_A          273 ALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999999874

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.72  E-value=7.1e-15  Score=141.59  Aligned_cols=228  Identities=10%  Similarity=0.022  Sum_probs=201.0

Q ss_pred             HHHhhhhccCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHH
Q 006562          368 FCVTRISKSKSISVDFRLSRGIAQVNEGK----------YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--LEAAI  435 (640)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~  435 (640)
                      .....++..+|.+..+|..++.++...+.          +.+++.+++.++..+|.+..+|...+.++...|.  +++++
T Consensus        51 ~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL  130 (331)
T 3dss_A           51 ELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWAREL  130 (331)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHH
T ss_pred             HHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHH
Confidence            34677889999999999999999988776          7899999999999999999999999999999994  99999


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------------CCHH
Q 006562          436 SDFTEAIQSNPSAGEAWKRRGQARAALGE-SVEAIQDLSKALEFEPNSADILHERGIVNFKF--------------KDFN  500 (640)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------~~~~  500 (640)
                      .++.++++.+|.+..+|...+.+....|. ++++++++.+++..+|.+..+|..++.++...              +.++
T Consensus       131 ~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~  210 (331)
T 3dss_A          131 ELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL  210 (331)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHH
Confidence            99999999999999999999999999998 69999999999999999999999999999887              5689


Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCcccHHHHHHHHHHHH---HhcC
Q 006562          501 AAVEDLSACVKLDKENKSAYTYLGLALSSI-----------GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ---DLAN  566 (640)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~---~~g~  566 (640)
                      ++++++.+++..+|++..+|+.+..++...           +.++++++.+.++++..|++...+..++.+..   ..|.
T Consensus       211 eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~  290 (331)
T 3dss_A          211 KELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY  290 (331)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhccccc
Confidence            999999999999999999998777766665           46899999999999999998655544444332   2577


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (640)
                      .++...++.+.++++|.....|..++.-+
T Consensus       291 ~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          291 EKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            88999999999999998877776665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.70  E-value=4.2e-16  Score=166.73  Aligned_cols=165  Identities=15%  Similarity=0.045  Sum_probs=128.3

Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  473 (640)
                      .|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47788888888888888888888888899998888999999999999988888888888888888888899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCccc
Q 006562          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI---GEYKKAEEAHLKAIQLDRNF  550 (640)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~a~~~~~~~  550 (640)
                      ++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...   |++++|...+++++..+|..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            988888888888888888888888888888888888888888888888888888888   88888888888888888887


Q ss_pred             HHHHHHHH
Q 006562          551 LEAWGHLT  558 (640)
Q Consensus       551 ~~~~~~la  558 (640)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            76666655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.70  E-value=4.4e-16  Score=166.57  Aligned_cols=165  Identities=15%  Similarity=0.176  Sum_probs=138.7

Q ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS  507 (640)
Q Consensus       428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  507 (640)
                      .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHhCCCC
Q 006562          508 ACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL---ANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       508 ~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~  584 (640)
                      ++++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...   |++++|+..++++++.+|..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999999999999999   99999999999999999988


Q ss_pred             hHHHHHHH
Q 006562          585 SKAYHLRG  592 (640)
Q Consensus       585 ~~~~~~la  592 (640)
                      ...+..++
T Consensus       162 ~~~~~~l~  169 (568)
T 2vsy_A          162 VEPFAFLS  169 (568)
T ss_dssp             SCHHHHTT
T ss_pred             cChHHHhC
Confidence            77776666

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.69  E-value=1.4e-15  Score=146.94  Aligned_cols=227  Identities=14%  Similarity=0.110  Sum_probs=195.8

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 006562          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSK  474 (640)
Q Consensus       396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~  474 (640)
                      +|.++..++..++...                 +..++|+..+.+++..+|++..+|...+.++...| .+++++..+..
T Consensus        52 ~y~~~~~~~r~~~~~~-----------------e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~  114 (349)
T 3q7a_A           52 EYKDAMDYFRAIAAKE-----------------EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNE  114 (349)
T ss_dssp             HHHHHHHHHHHHHHTT-----------------CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhC-----------------CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4566666666555543                 44568999999999999999999999999999999 59999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Q 006562          475 ALEFEPNSADILHERGIVNFKF-K-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK--------KAEEAHLKAI  544 (640)
Q Consensus       475 al~~~p~~~~~~~~la~~~~~~-~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~a~  544 (640)
                      ++..+|++..+|...+.++... + ++++++.++.++++.+|.+..+|...+.+....|.++        +++.++.+++
T Consensus       115 ~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I  194 (349)
T 3q7a_A          115 FAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEML  194 (349)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHH
Confidence            9999999999999999999998 8 9999999999999999999999999999999988887        9999999999


Q ss_pred             ccCcccHHHHHHHHHHHHHhcC-------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCH----------------
Q 006562          545 QLDRNFLEAWGHLTQFYQDLAN-------SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQH----------------  601 (640)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~----------------  601 (640)
                      +.+|.+..+|...+.++...+.       ++++++++.+++..+|++..+|..+..++...|+.                
T Consensus       195 ~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~  274 (349)
T 3q7a_A          195 RVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL  274 (349)
T ss_dssp             HHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred             HhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence            9999999999999999999887       79999999999999999999999999999887764                


Q ss_pred             ----HHHHHHHHHhhccC------CCCHHHHHHHHHHHHHcCCccccc
Q 006562          602 ----KKAIKDLSSGLGID------PSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       602 ----~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                          ..-.......+...      +..+.++..++.+|...|+.++|+
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~  322 (349)
T 3q7a_A          275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA  322 (349)
T ss_dssp             -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence                23333333333322      467889999999999999888775

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.69  E-value=6.2e-17  Score=138.86  Aligned_cols=116  Identities=12%  Similarity=-0.015  Sum_probs=89.2

Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       504 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      ..+++++.++|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++..+|++++|+..|++++.++|+
T Consensus        23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~  102 (151)
T 3gyz_A           23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN  102 (151)
T ss_dssp             CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence            44556666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562          584 FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       584 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (640)
                      ++.+++.+|.++..+|++++|+..|++++++.|+.+
T Consensus       103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            777777777777777777777777777777777644

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.69  E-value=1.3e-16  Score=148.96  Aligned_cols=207  Identities=14%  Similarity=0.070  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHhCCCcH------
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGR-------GTARAFQRELEAAISDFTEAIQSNPSAG------  449 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~------  449 (640)
                      .++..|.-+ ..+++..|...|.++++.+|+..++|..+       +.++...++..+++..+.+.+.+.|...      
T Consensus         9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~   87 (282)
T 4f3v_A            9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI   87 (282)
T ss_dssp             HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred             HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence            345555555 57888888889998888888888888888       7888888888888888888888766532      


Q ss_pred             ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 006562          450 ---------------EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK  514 (640)
Q Consensus       450 ---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~  514 (640)
                                     ++...++.++...|++++|.+.|..++...|.+. ..+.+|.+++..++|++|+..|+.+....+
T Consensus        88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A           88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence                           3444567777778888888888877777777666 777778888888888888888876655421


Q ss_pred             Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--cc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562          515 EN--KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--RN-FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       515 ~~--~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  589 (640)
                      ..  ..+++.+|.++..+|++++|+.+|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ +.++.
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence            11  3467777888888888888888888776443  44 5567777777777788888888888877777777 66555


Q ss_pred             HHH
Q 006562          590 LRG  592 (640)
Q Consensus       590 ~la  592 (640)
                      .+.
T Consensus       246 aL~  248 (282)
T 4f3v_A          246 ALK  248 (282)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.69  E-value=8.2e-13  Score=140.90  Aligned_cols=223  Identities=9%  Similarity=-0.020  Sum_probs=198.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAI-SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKAL  476 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  476 (640)
                      ......|++++...|.++..|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44667899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             HhC-----------CC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcC-C
Q 006562          477 EFE-----------PN-----------SADILHERGIVNFKFKDFNAAVEDLSACVKL-DKENKSAYTYLGLALSSIG-E  532 (640)
Q Consensus       477 ~~~-----------p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~g-~  532 (640)
                      ...           |.           ...+|...+.+..+.|..+.|...|.+|++. .+....+|...+.+....+ +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           43           2457888889889999999999999999988 5455677777787777765 4


Q ss_pred             HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562          533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR---FSKAYHLRGLLLHGLGQHKKAIKDLS  609 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~  609 (640)
                      ++.|..+|+++++..|+++..|...+......|+.+.|..+|++++...|+   ....|..........|+.+.+....+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999998873   55688888888999999999999999


Q ss_pred             HhhccCCCCHH
Q 006562          610 SGLGIDPSNIE  620 (640)
Q Consensus       610 ~al~~~p~~~~  620 (640)
                      ++.+..|++..
T Consensus       566 R~~~~~P~~~~  576 (679)
T 4e6h_A          566 RFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHSTTCCH
T ss_pred             HHHHhCCCCcH
Confidence            99999998754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.68  E-value=3e-16  Score=132.34  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc--------h-----hHHHhHHHHHHhhhcHHHHHHHHHHHHHc-----
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYE--------I-----QDICNRAFCYSQLELHKHVIRDCDKALQL-----   98 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~--------~-----~~~~~~A~~~~~~g~~~~Ai~~~~~al~~-----   98 (640)
                      ......+..+|..|+|++|+.+|++||+++|+        .     .+|+|+|.|+.++|+|++|+..|++||++     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            33344556779999999999999999999976        2     27999999999999999999999999999     


Q ss_pred             --CCCchHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhH
Q 006562           99 --DPTLLQAY----ILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (640)
Q Consensus        99 --~P~~~~a~----~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l  146 (640)
                        +|++.++|    +++|.++..+|++++|+.+|++|+++.|+.......+..+
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~  145 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM  145 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence              99999999    9999999999999999999999999998886654444333

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.68  E-value=1.6e-16  Score=148.46  Aligned_cols=206  Identities=14%  Similarity=0.021  Sum_probs=180.5

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR-------GQARAALGESVEAIQDLSKALEFEPNSA-------  483 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~al~~~p~~~-------  483 (640)
                      ++..|.-+ ..+++..|...|.+++..+|...++|..+       +.++...++..+++..+.+.+.+.|...       
T Consensus        10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~   88 (282)
T 4f3v_A           10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG   88 (282)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred             HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence            34445554 57999999999999999999999999999       8999999999999999999999776542       


Q ss_pred             --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          484 --------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       484 --------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                                    ++...++.++...|++++|.+.|..++...|.+. ..+.+|.++...+++++|+..|+++....+.
T Consensus        89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~  167 (282)
T 4f3v_A           89 GLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK  167 (282)
T ss_dssp             TTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred             CcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence                          4556688999999999999999999999999888 9999999999999999999999988775322


Q ss_pred             -c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 006562          550 -F-LEAWGHLTQFYQDLANSEKALECLQQVLYID--KR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL  624 (640)
Q Consensus       550 -~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  624 (640)
                       . ..+++++|.++..+|++++|+..|++++...  |. .+.+++.+|.++..+|+.++|...|++++..+|+ ..++..
T Consensus       168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~a  246 (282)
T 4f3v_A          168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAA  246 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHH
Confidence             2 4589999999999999999999999998544  54 5679999999999999999999999999999999 877766


Q ss_pred             HH
Q 006562          625 RA  626 (640)
Q Consensus       625 la  626 (640)
                      |.
T Consensus       247 L~  248 (282)
T 4f3v_A          247 LK  248 (282)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.68  E-value=6e-15  Score=135.61  Aligned_cols=174  Identities=17%  Similarity=0.086  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHH
Q 006562          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK----DFNAAVEDLSAC  509 (640)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~~a  509 (640)
                      |+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+++
T Consensus         5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            44555555543  45555556666665566666666666665543  345566666666655 4    566666666666


Q ss_pred             HHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCc--ccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHH
Q 006562          510 VKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDR--NFLEAWGHLTQFYQD----LANSEKALECLQQVLY  579 (640)
Q Consensus       510 l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~  579 (640)
                      .+  +.++.+++.+|.+|..    .+++++|+.+|+++....+  ..+.+++.+|.+|..    .+++++|+.+|+++.+
T Consensus        80 ~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           80 VE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            43  3456666666666665    5666666666666666655  346666666666666    6666677777776666


Q ss_pred             hCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHhhccC
Q 006562          580 IDKRFSKAYHLRGLLLHGL-G-----QHKKAIKDLSSGLGID  615 (640)
Q Consensus       580 ~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~  615 (640)
                      . |.++.+++.+|.+|... |     ++++|+.+|+++.+..
T Consensus       158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            5 45566666666666543 2     6677777777766653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=2.2e-16  Score=135.41  Aligned_cols=111  Identities=13%  Similarity=0.002  Sum_probs=50.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH
Q 006562          439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS  518 (640)
Q Consensus       439 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~  518 (640)
                      ++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.
T Consensus        26 ~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~  105 (151)
T 3gyz_A           26 KDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT  105 (151)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcH
Confidence            33334444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      +++.+|.++..+|++++|+..|++++...|+
T Consensus       106 ~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          106 PVFHTGQCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4444444444444444444444444444443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.67  E-value=6.4e-15  Score=135.42  Aligned_cols=185  Identities=19%  Similarity=0.037  Sum_probs=157.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG----ESVEAIQDLS  473 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~----~~~~A~~~~~  473 (640)
                      .+|+.+|+++.+.  .++.+++.+|.+|...+++++|+.+|+++.+.  .++.+++.+|.+|.. +    ++++|+.+|+
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3577888888875  67999999999999999999999999999875  578899999999988 7    8999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 006562          474 KALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDK--ENKSAYTYLGLALSS----IGEYKKAEEAHLKA  543 (640)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~----~g~~~~A~~~~~~a  543 (640)
                      ++.+  +.++.+++.+|.+|..    .+++++|+.+|+++.+..|  .++.+++.+|.+|..    .+++++|+.+|+++
T Consensus        78 ~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           78 KAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            9965  5688999999999988    8899999999999999887  358999999999999    88999999999999


Q ss_pred             HccCcccHHHHHHHHHHHHHh-c-----CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562          544 IQLDRNFLEAWGHLTQFYQDL-A-----NSEKALECLQQVLYIDKRFSKAYHLRG  592 (640)
Q Consensus       544 ~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~~~~~~~~~~la  592 (640)
                      ... |.++.+++.+|.+|... |     ++++|+.+|+++.+..  ++.+...++
T Consensus       156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~  207 (212)
T 3rjv_A          156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFD  207 (212)
T ss_dssp             HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHH
T ss_pred             HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Confidence            988 66678899999999865 3     8999999999998774  344444444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.67  E-value=1e-12  Score=140.24  Aligned_cols=207  Identities=11%  Similarity=-0.013  Sum_probs=181.4

Q ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006562          432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI-QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACV  510 (640)
Q Consensus       432 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al  510 (640)
                      ......|++++...|.++.+|+..+..+...|+.++|. ..|++++...|.+...|..++.+....|+++.|...|++++
T Consensus       326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44567899999999999999999999999999999997 99999999999999999999999999999999999999999


Q ss_pred             HhC-----------CC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CcccHHHHHHHHHHHHHhc-C
Q 006562          511 KLD-----------KE-----------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-DRNFLEAWGHLTQFYQDLA-N  566 (640)
Q Consensus       511 ~~~-----------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g-~  566 (640)
                      ...           |.           ...+|...+.+..+.|+.+.|...|.+|+.. .+.....|...|.+....+ +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence            752           43           3457888888888899999999999999987 4445677877787777665 4


Q ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC---CHHHHHHHHHHHHHcCCcccc
Q 006562          567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS---NIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A  638 (640)
                      ++.|..+|+++++..|+++..|...+......|+.+.|...|++++...|+   ...+|..........|+.+.+
T Consensus       486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~  560 (679)
T 4e6h_A          486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV  560 (679)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            899999999999999999999999999999999999999999999998883   457788888888888877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.66  E-value=5e-16  Score=149.61  Aligned_cols=196  Identities=16%  Similarity=0.091  Sum_probs=103.4

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          413 MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       413 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      .++..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHH
Q 006562          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALE  572 (640)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  572 (640)
                      +...|++++|+..|++++.++|+++..+.........   ..++...........|.++.+...++.++  .|++++|++
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~  156 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELE  156 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHH
Confidence            5555555555555555555555432111111111111   11112222222234444555555555543  566667777


Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHhc-CCHHHHHHHHHHhhc
Q 006562          573 CLQQVLYIDKRFSKAYHLRGLLLHGL-GQHKKAIKDLSSGLG  613 (640)
Q Consensus       573 ~~~~al~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~  613 (640)
                      .++++++.+|++......++.++... +.+++|...|.++.+
T Consensus       157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            77777666666666666666555554 556667777766654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.65  E-value=6.3e-16  Score=148.90  Aligned_cols=198  Identities=14%  Similarity=0.054  Sum_probs=164.7

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQ  457 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  457 (640)
                      |.++..++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++.+|++..+++.+|.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      ++...|++++|+..|+++++++|++...+........   ...++...........|.+..+...++.++  .|++++|+
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~  155 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL  155 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence            9999999999999999999998866322211111111   122233333344456677777777777765  69999999


Q ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Q 006562          538 EAHLKAIQLDRNFLEAWGHLTQFYQDL-ANSEKALECLQQVLYI  580 (640)
Q Consensus       538 ~~~~~a~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~  580 (640)
                      ..++++++.+|.+......++.++... +.+++|...|.++.+.
T Consensus       156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            999999999999988888888877776 7789999999988653

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.65  E-value=8.2e-15  Score=143.34  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=81.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------cHHHHH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMY------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS------AGEAWK  453 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~  453 (640)
                      ..|.++...|++++|+..|.++++..+..      ..++..+|.+|...|++++|+.+|++++++.+.      ...++.
T Consensus        41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~  120 (307)
T 2ifu_A           41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALD  120 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            33445555555555555555555443211      234455555555555555555555555544321      123444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHH
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYT  521 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~  521 (640)
                      .+|.+|.. |++++|+.+|++++.+.|..      ..++..+|.++..+|++++|+.+|++++.+.|.+      ...+.
T Consensus       121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  199 (307)
T 2ifu_A          121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI  199 (307)
T ss_dssp             HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            55555555 55555555555555544322      2345555555555555555555555555543322      12444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcc
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRN  549 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~  549 (640)
                      .+|.++...|++++|+..|++++ .+|.
T Consensus       200 ~~g~~~~~~g~~~~A~~~~~~al-~~p~  226 (307)
T 2ifu_A          200 AQVLVQLHRADYVAAQKCVRESY-SIPG  226 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHT-TSTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHh-CCCC
Confidence            45555555555555555555555 5543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.65  E-value=3.2e-17  Score=162.25  Aligned_cols=152  Identities=17%  Similarity=0.194  Sum_probs=106.2

Q ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHH
Q 006562          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS---------------ADILHERGIV  492 (640)
Q Consensus       428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~  492 (640)
                      ++++++|+..+++++...|..+.++..+|.++...|++++|+..|++++.+.|.+               ..++..+|.+
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  205 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC  205 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            4455566666666666666666666666666666666666666666666666666               4677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHH-H
Q 006562          493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKA-L  571 (640)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A-~  571 (640)
                      +...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++.++|++..++..++.++...|++++| .
T Consensus       206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777777777777777777777777777777777777776 3


Q ss_pred             HHHHHHHH
Q 006562          572 ECLQQVLY  579 (640)
Q Consensus       572 ~~~~~al~  579 (640)
                      ..|.+++.
T Consensus       286 ~~~~~~~~  293 (336)
T 1p5q_A          286 KLYANMFE  293 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            45555543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.64  E-value=1.3e-17  Score=165.00  Aligned_cols=153  Identities=18%  Similarity=0.108  Sum_probs=143.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN---------------KSAYTYLGL  525 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~---------------~~~~~~la~  525 (640)
                      .++++++|+..+++++...|....++..+|.+++..|++++|+..|++++.+.|.+               ..++.++|.
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            45678888888888888889899999999999999999999999999999999998               699999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH-
Q 006562          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKA-  604 (640)
Q Consensus       526 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A-  604 (640)
                      ++...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++++| 
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  284 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  284 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHhhc
Q 006562          605 IKDLSSGLG  613 (640)
Q Consensus       605 ~~~~~~al~  613 (640)
                      ...|++++.
T Consensus       285 ~~~~~~~~~  293 (336)
T 1p5q_A          285 KKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            556676654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.64  E-value=5.9e-16  Score=133.15  Aligned_cols=116  Identities=13%  Similarity=0.047  Sum_probs=68.1

Q ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       505 ~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      .+++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++..+|++
T Consensus         9 ~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~   88 (148)
T 2vgx_A            9 TIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE   88 (148)
T ss_dssp             SHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             hHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            34555555555555555555555555666666666655555555555555556666655666666666666666555655


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          585 SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       585 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      +.+++.+|.++...|++++|+..|+++++++|+++.
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            555666666666666666666666666555555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.63  E-value=1.7e-15  Score=130.30  Aligned_cols=113  Identities=13%  Similarity=0.047  Sum_probs=56.7

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562          404 FDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       404 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  483 (640)
                      |++++..+|+++.+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+++
T Consensus        10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~   89 (148)
T 2vgx_A           10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP   89 (148)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT
T ss_pred             HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence            44444444444445555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          484 DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       484 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      .+++.+|.++...|++++|+..|++++++.|++
T Consensus        90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  122 (148)
T 2vgx_A           90 RFPFHAAECLLQXGELAEAESGLFLAQELIANX  122 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            555555555555555555555555555544443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.62  E-value=3.6e-14  Score=119.68  Aligned_cols=133  Identities=31%  Similarity=0.443  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      .++.+|..+...|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            34555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 006562          463 GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE  515 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~  515 (640)
                      |++++|+..+++++...|.+..++..+|.++...|++++|...+++++..+|.
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            66666666666666666665556666666666666666666666666555553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.62  E-value=4.6e-14  Score=119.01  Aligned_cols=132  Identities=33%  Similarity=0.450  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (640)
                      +++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~   82 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ   82 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence            45555666666666666666666666666655555666666666666666666666666666665555555556666666


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc
Q 006562          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR  548 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  548 (640)
                      |++++|+..+++++...|.++.++..+|.++...|++++|...+.+++..+|
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            6666666666666555555555555555555555555555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=3.2e-15  Score=157.54  Aligned_cols=206  Identities=16%  Similarity=0.150  Sum_probs=134.1

Q ss_pred             HHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          392 VNEGKY-ASAISIFDQILKEDPMYPEALIGRGTARAFQRE----------LEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       392 ~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...|++ ++|+..+++++..+|++..+|..++.++...|+          +++++..++++++.+|++..+|...+.++.
T Consensus        39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344444 577888888888888888888888888888776          666666666666666666666666666666


Q ss_pred             HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006562          461 ALG--ESVEAIQDLSKALEFEPNSADILHERGIVNFKFK-DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAE  537 (640)
Q Consensus       461 ~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  537 (640)
                      ..+  ++++++..+.++++.+|.+..+|...+.+....| .++++++++.++++.+|.+..+|..++.++...+...++ 
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~-  197 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS-  197 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS-
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc-
Confidence            666  4466666666666666666666666666655555 555555555555555555555555555555443221000 


Q ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHH------------HH
Q 006562          538 EAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK------------AI  605 (640)
Q Consensus       538 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~------------A~  605 (640)
                               .+..          -...+.++++++++.+++..+|++..+|+.++.++...+++++            |+
T Consensus       198 ---------~~~~----------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~  258 (567)
T 1dce_A          198 ---------GPQG----------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLS  258 (567)
T ss_dssp             ---------SSCC----------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEE
T ss_pred             ---------cccc----------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEE
Confidence                     0000          0002557888899999999999999999999988888887666            55


Q ss_pred             HHHHHhhccCCC
Q 006562          606 KDLSSGLGIDPS  617 (640)
Q Consensus       606 ~~~~~al~~~p~  617 (640)
                      ..|.+++.++|.
T Consensus       259 ~~f~~~i~~~~~  270 (567)
T 1dce_A          259 VCFSRPLTVGSR  270 (567)
T ss_dssp             EEEEEEECTTBT
T ss_pred             EEeccceecccc
Confidence            567777776665

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.61  E-value=9.3e-15  Score=121.95  Aligned_cols=99  Identities=16%  Similarity=0.152  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCch-------HHHHH
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLL-------QAYIL  108 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~-------~a~~~  108 (640)
                      ...+-.+..+|+.|+|++|+.+|++||+++ .++.+|+++|.||.++|+|++|+..++++|+++|++.       .+|++
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            444445667899999999999999999999 4556799999999999999999999999999998764       58999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562          109 KGCAFSALGRKEEALSVWEKGYEHALH  135 (640)
Q Consensus       109 ~g~~y~~~g~~~~A~~~~~~al~~~~~  135 (640)
                      +|.+|..+|++++|+..|+++++..|+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence            999999999999999999999988774

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.60  E-value=1.9e-14  Score=126.13  Aligned_cols=113  Identities=15%  Similarity=0.089  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcc------------------c-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQ------------------S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQ   97 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~------------------~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~   97 (640)
                      ..-+..+..+|..|+|++|+.+|+++|..                  + .+..+++++|.||+++|+|++|+..|+++|+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            33445566789999999999999999998                  4 3335689999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCCh-HHHHHHHhHHHH
Q 006562           98 LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQS-ADLKQFLELEEL  149 (640)
Q Consensus        98 ~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~l~~~  149 (640)
                      ++|+++++|+++|.+|..+|++++|+..|++++++.|+.+ .....+..+...
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~  144 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER  144 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987 334444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.60  E-value=4e-15  Score=127.17  Aligned_cols=112  Identities=15%  Similarity=0.153  Sum_probs=51.5

Q ss_pred             hhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562          372 RISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (640)
Q Consensus       372 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (640)
                      .+...+|.++..++.+|..++..|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|++++..+|+++.+
T Consensus         9 ~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A            9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            33344444444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 006562          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~  483 (640)
                      ++.+|.++...|++++|+..|++++.+.|.++
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  120 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQP  120 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            44444444444444444444444444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=2.1e-14  Score=122.71  Aligned_cols=130  Identities=13%  Similarity=0.080  Sum_probs=117.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562          402 SIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN  481 (640)
Q Consensus       402 ~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  481 (640)
                      ..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (640)
Q Consensus       482 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  531 (640)
                      ++.+++.+|.++...|++++|+..|++++..+|+++........+....+
T Consensus        85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  134 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE  134 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988766665555554443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.58  E-value=1.7e-13  Score=129.69  Aligned_cols=224  Identities=8%  Similarity=-0.059  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (640)
                      ...+.+.+.++..|++....        ..+....+...++..+.  ++   |+..+++.+...+....++..+|.++..
T Consensus        46 ~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~  112 (310)
T 3mv2_B           46 TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAI  112 (310)
T ss_dssp             HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45566677788888877421        12222234444444432  32   7888988887765666777899999999


Q ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcC--
Q 006562          462 LGESVEAIQDLSKALEFEP--NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIG--  531 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g--  531 (640)
                      .|++++|+.++.+.+..+|  .+.+++...+.++..+|+.+.|.+.++++.+.+|+      .......-+++....|  
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            9999999999999999887  77889999999999999999999999999999883      2333334455576667  


Q ss_pred             CHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------CCCChHHHHHHHHHHHhcC
Q 006562          532 EYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYI----------DKRFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       532 ~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~~~la~~~~~~g  599 (640)
                      ++.+|...|+++....|+.  +..+++   ++..+|++++|...++.+++.          +|+++.++.+++.+...+|
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg  269 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG  269 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence            8999999999998888862  333333   899999999999999987776          4889999999998888899


Q ss_pred             CHHHHHHHHHHhhccCCCCHHHHH
Q 006562          600 QHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      +  +|.++++++.+.+|+++.+.-
T Consensus       270 k--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          270 L--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             C--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             h--HHHHHHHHHHHhCCCChHHHH
Confidence            7  899999999999999986543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.8e-14  Score=117.14  Aligned_cols=114  Identities=19%  Similarity=0.251  Sum_probs=78.3

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      .+..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            35566666777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 006562          460 AALGESVEAIQDLSKALEFE------PNSADILHERGIVN  493 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~  493 (640)
                      ...|++++|+..|+++++++      |.+..++..++.+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            77777777777777777666      66666655555544

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.57  E-value=1.2e-13  Score=134.01  Aligned_cols=166  Identities=11%  Similarity=0.038  Sum_probs=97.1

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-----
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP------EALIGRGTARAFQRELEAAISDFTEAIQSNPSA-----  448 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----  448 (640)
                      ....+...+..++..|+|++|+..+.++++..+...      ..++.+|.++...|++++|+.++++++...+..     
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            345556677777777777777777777777666543      234456666666666667777666666554332     


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----
Q 006562          449 -GEAWKRRGQARAALGESVEAIQDLSKAL---EFEPNSA----DILHERGIVNFKFKDFNAAVEDLSACVKLDKE-----  515 (640)
Q Consensus       449 -~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-----  515 (640)
                       ..++..+|.+|...|++++|+.+|++++   +..|.+.    .+++.+|.+|...|++++|+.++++++...+.     
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence             3455666666666666666666666666   3334322    35555566666666666666666665554321     


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHc
Q 006562          516 -NKSAYTYLGLALSSIGEYKKA-EEAHLKAIQ  545 (640)
Q Consensus       516 -~~~~~~~la~~~~~~g~~~~A-~~~~~~a~~  545 (640)
                       ...+++.+|.++..+|++++| ..++++++.
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence             134455555555555555555 444555543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.57  E-value=4.1e-14  Score=118.07  Aligned_cols=115  Identities=14%  Similarity=0.094  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      ...+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++.+|+++.+++.+|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hcCCHHHHHHHHHHhhccC------CCCHHHHHHHHHHHHH
Q 006562          597 GLGQHKKAIKDLSSGLGID------PSNIECLYLRASCYHA  631 (640)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~  631 (640)
                      .+|++++|+..|+++++++      |++..++..++.+...
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~  124 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence            6666666666666666666      6666666666555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.57  E-value=8.2e-14  Score=146.78  Aligned_cols=172  Identities=14%  Similarity=0.175  Sum_probs=110.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CH
Q 006562          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKD----------FNAAVEDLSACVKLDKENKSAYTYLGLALSSIG--EY  533 (640)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g--~~  533 (640)
                      ++|+..+.+++..+|++..+|...+.++...|+          +++++..+++++..+|++..+|...+.++...+  ++
T Consensus        46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccH
Confidence            344555555555555555555555555555554          555555555555555555555555555555555  44


Q ss_pred             HHHHHHHHHHHccCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhc--------------
Q 006562          534 KKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA-NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGL--------------  598 (640)
Q Consensus       534 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~--------------  598 (640)
                      ++++..+.++++.+|.+..+|.+.+.+....| .++++++++.++++.+|.+..+|..++.++...              
T Consensus       126 ~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~  205 (567)
T 1dce_A          126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPE  205 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCH
T ss_pred             HHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccH
Confidence            55555555555555555555555555555555 555555555555555555555555555555543              


Q ss_pred             CCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCccc
Q 006562          599 GQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE  637 (640)
Q Consensus       599 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~  637 (640)
                      +.+++|++++.+++..+|++..+|+.++.++...+++++
T Consensus       206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          206 NVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             HHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            568999999999999999999999999999999888655

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.56  E-value=3.3e-13  Score=131.05  Aligned_cols=167  Identities=9%  Similarity=0.001  Sum_probs=116.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----  482 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-----  482 (640)
                      ....+...+..+...|++++|+..+.++++..+...      ..+..+|.++...|++++|+..+++++...+..     
T Consensus        74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  153 (293)
T 2qfc_A           74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ  153 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence            344556677788888888888888888888776543      234557777777778888888888887665433     


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc-----
Q 006562          483 -ADILHERGIVNFKFKDFNAAVEDLSACV---KLDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN-----  549 (640)
Q Consensus       483 -~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----  549 (640)
                       ..++..+|.+|...|++++|+.++++++   ...|++.    .+++++|.+|...|++++|+.++++++...+.     
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~  233 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence             4467777777777777777777777777   3344432    46677777777777777777777777765432     


Q ss_pred             -cHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHh
Q 006562          550 -FLEAWGHLTQFYQDLANSEKA-LECLQQVLYI  580 (640)
Q Consensus       550 -~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~  580 (640)
                       ...++..+|.+|..+|++++| ..++++++.+
T Consensus       234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence             256677777777777777777 6667776644

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.56  E-value=1.7e-13  Score=126.18  Aligned_cols=150  Identities=17%  Similarity=0.121  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS  528 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  528 (640)
                      ...++.+|.++...|++++|+..|++++  .| ++.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            3457788999999999999999998885  33 67889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHccCcccH----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 006562          529 SIGEYKKAEEAHLKAIQLDRNFL----------------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG  592 (640)
Q Consensus       529 ~~g~~~~A~~~~~~a~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la  592 (640)
                      ..|++++|+..|++++...|.+.                .++..+|.++...|++++|+..|++++...|+..       
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-------  155 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR-------  155 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG-------
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc-------
Confidence            99999999999999998766544                8888999999999999999999999998888753       


Q ss_pred             HHHHhcCCHHHHHHHHHHhhc
Q 006562          593 LLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       593 ~~~~~~g~~~~A~~~~~~al~  613 (640)
                           .+..+.|+..+.+...
T Consensus       156 -----~~~~~~a~~~~~~~~~  171 (213)
T 1hh8_A          156 -----HSKIDKAMECVWKQKL  171 (213)
T ss_dssp             -----GGHHHHHHHHHHTTCC
T ss_pred             -----cchHHHHHHHHHhccc
Confidence                 2445556666655444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.56  E-value=1.7e-13  Score=126.11  Aligned_cols=133  Identities=19%  Similarity=0.249  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...++.+|..++..|++++|+..|++++  +| ++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++.
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4456788999999999999999999885  33 68899999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          461 ALGESVEAIQDLSKALEFEPNSA----------------DILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      ..|++++|+..|+++++..|.+.                .+++.+|.++...|++++|+..+++++...|++
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999999888766                788888888888888888888888888888876

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=1e-14  Score=132.59  Aligned_cols=150  Identities=23%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSA----------------DI  485 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~  485 (640)
                      +.+....|+++++.+.+.......+.....+..+|..++..|++++|+..|.+++...|.++                .+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~   90 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC   90 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence            33344444455544444444433344444555555555555555555555555555555444                45


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      +..+|.++...|++++|+.++++++..+|.++.+++.+|.++...|++++|+..|++++..+|.+..++..++.++...+
T Consensus        91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A           91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHH
Q 006562          566 NSEKAL  571 (640)
Q Consensus       566 ~~~~A~  571 (640)
                      +..++.
T Consensus       171 ~~~~~~  176 (198)
T 2fbn_A          171 EARKKD  176 (198)
T ss_dssp             HHHC--
T ss_pred             HHHHHH
Confidence            444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.55  E-value=7.9e-15  Score=133.41  Aligned_cols=155  Identities=18%  Similarity=0.095  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-------------
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK-------------  517 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------------  517 (640)
                      .....+......|.++++.+.+.......+.....+..+|..++..|++++|+..|.+++...|.++             
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   85 (198)
T 2fbn_A            6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKN   85 (198)
T ss_dssp             ----------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence            3344556666677777777777766665556667788888888888888888888888888887776             


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 006562          518 ---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL  594 (640)
Q Consensus       518 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~  594 (640)
                         .++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|+..|++++..+|+++.++..++.+
T Consensus        86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  165 (198)
T 2fbn_A           86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence               77778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHhcCCHHHHH
Q 006562          595 LHGLGQHKKAI  605 (640)
Q Consensus       595 ~~~~g~~~~A~  605 (640)
                      +...++..++.
T Consensus       166 ~~~~~~~~~~~  176 (198)
T 2fbn_A          166 VNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHHHH
Confidence            77777666655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.55  E-value=2.9e-13  Score=118.91  Aligned_cols=132  Identities=19%  Similarity=0.184  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++..+|.++.++..+|.++.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56677778888888888888888888888888888888888888888888888888888888888877777888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHh
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERG--IVNFKFKDFNAAVEDLSACVKL  512 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~~~~~~A~~~~~~al~~  512 (640)
                      ..|++++|+.++++++...|.+..++..++  ..+...|++++|+..+.++...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            888888888888888888777777664433  3366677777777777765443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.55  E-value=5e-14  Score=125.49  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=108.3

Q ss_pred             HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HH
Q 006562          391 QVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA-RAALGES--VE  467 (640)
Q Consensus       391 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~~~~--~~  467 (640)
                      +...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|+++++.+|.++.++..+|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            34578888899999999998998889999999999999999999999999998888888888888888 7788888  88


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY  520 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  520 (640)
                      |+..+++++..+|.+..++..+|.++...|++++|+..+++++..+|.+....
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            88888888888888888888888888888888888888888888888775433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.55  E-value=2.7e-14  Score=127.26  Aligned_cols=123  Identities=19%  Similarity=0.171  Sum_probs=59.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCH--HHHHH
Q 006562          462 LGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA-LSSIGEY--KKAEE  538 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~-~~~~g~~--~~A~~  538 (640)
                      .|++++|+..+++++..+|.++.++..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++  ++|+.
T Consensus        23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~  102 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA  102 (177)
T ss_dssp             ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence            34444555555555555555555555555555555555555555555555555555555555554 4444444  45555


Q ss_pred             HHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Q 006562          539 AHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       539 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  584 (640)
                      .+++++..+|.++.++..+|.++...|++++|+..|++++...|++
T Consensus       103 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A          103 MIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            5555555555444445555555555555555555555555444444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.55  E-value=1.6e-13  Score=133.30  Aligned_cols=163  Identities=12%  Similarity=0.051  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPE------ALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GE  450 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~  450 (640)
                      .+...+..++..|++++|+..+++++...+..+.      .+..+|.++...|++++|+.++++++...+..      ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            3444566777777777777777777776665543      22235666666666677777777666643322      22


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------H
Q 006562          451 AWKRRGQARAALGESVEAIQDLSKALEFE---PNS----ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------K  517 (640)
Q Consensus       451 ~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~  517 (640)
                      ++..+|.+|...|++++|+.+|+++++..   |.+    ..+++.+|.+|...|++++|+.++++++.+.+..      .
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~  236 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            45566666666666666666666665321   111    2244455555555555555555555554443211      3


Q ss_pred             HHHHHHHHHHHHcC-CHHHHHHHHHHHHc
Q 006562          518 SAYTYLGLALSSIG-EYKKAEEAHLKAIQ  545 (640)
Q Consensus       518 ~~~~~la~~~~~~g-~~~~A~~~~~~a~~  545 (640)
                      .+++.+|.++..+| .+++|+.+|++++.
T Consensus       237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            44444444444444 23444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.54  E-value=1.1e-13  Score=115.99  Aligned_cols=123  Identities=22%  Similarity=0.222  Sum_probs=97.5

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 006562          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGL  593 (640)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~  593 (640)
                      |.+...+..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            44566777777778788888888888888877777777778888888888888888888888888888877888888888


Q ss_pred             HHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcc
Q 006562          594 LLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR  636 (640)
Q Consensus       594 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  636 (640)
                      ++...|++++|+.+|+++++.+|++..++..++.++..+|+++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            8888888888888888888888888888888888888777753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.54  E-value=3.5e-13  Score=118.36  Aligned_cols=128  Identities=21%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (640)
                      ..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.++..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Q 006562          496 FKDFNAAVEDLSACVKLDKENKSAYTYLG--LALSSIGEYKKAEEAHLKA  543 (640)
Q Consensus       496 ~~~~~~A~~~~~~al~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~a  543 (640)
                      .|++++|+.++++++..+|.+..++..++  ..+...|++++|+..+.++
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            55555555555555555555554443222  2244445555555554443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.53  E-value=2.4e-13  Score=113.89  Aligned_cols=123  Identities=22%  Similarity=0.342  Sum_probs=91.0

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .|.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+.+++...|.++.++..+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            34456677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDF  499 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  499 (640)
                      .++...|++++|+..+++++...|.+..++..++.++...|++
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            7777777777777777777777777777777777777766654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.53  E-value=2.2e-13  Score=114.55  Aligned_cols=124  Identities=17%  Similarity=0.238  Sum_probs=100.8

Q ss_pred             ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (640)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (640)
                      ...|..+..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|.++.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            34566677888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Q 006562          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD  498 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~  498 (640)
                      +|.++...|++++|+..+++++..+|.+..++..++.++...|+
T Consensus        90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            88888888888888888888888888777788888877776653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.52  E-value=2e-13  Score=119.79  Aligned_cols=116  Identities=28%  Similarity=0.330  Sum_probs=90.3

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .+.++..++.+|..++..|+|++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            44556777788888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      .++...|++++|+..|+++++++|++...+...+..
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            888888888888888888888877776655554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.52  E-value=3.4e-13  Score=113.40  Aligned_cols=118  Identities=23%  Similarity=0.329  Sum_probs=60.4

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      ....+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++..+|.++.++..+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      ...|++++|+..|++++..+|.+..++..++.++..+|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            55555555555555555555555455555555444443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.51  E-value=5.7e-13  Score=129.31  Aligned_cols=159  Identities=11%  Similarity=0.006  Sum_probs=98.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc------HHHHHHH
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSAD------ILHERGIVNFKFKDFNAAVEDLSACVKLDKEN------KSAYTYL  523 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l  523 (640)
                      +..+...|++++|+..+++++...+..+.      .+..+|.++...|++++|+.++++++...+..      ..++..+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            34444555555555555555554443332      22235555555666666666666666543221      2356666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHcc-------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC------hHHHHH
Q 006562          524 GLALSSIGEYKKAEEAHLKAIQL-------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF------SKAYHL  590 (640)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~a~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~  590 (640)
                      |.+|...|++++|+.+|++++..       .+....++.++|.+|..+|++++|+.+++++++..+..      +.++..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            77777777777777777776632       22335567778888888888888888888777665422      567788


Q ss_pred             HHHHHHhcCC-HHHHHHHHHHhhcc
Q 006562          591 RGLLLHGLGQ-HKKAIKDLSSGLGI  614 (640)
Q Consensus       591 la~~~~~~g~-~~~A~~~~~~al~~  614 (640)
                      +|.++..+|+ +++|+.+|++++.+
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            8888888884 58888888887754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.50  E-value=2.8e-13  Score=118.86  Aligned_cols=112  Identities=22%  Similarity=0.302  Sum_probs=70.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      ++..++.+|.+++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++.++|.+..+++.+|.++
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          494 FKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (640)
Q Consensus       494 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  525 (640)
                      ...|++++|+.+|+++++++|++...++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  121 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL  121 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            66666666666666666666666554444443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.49  E-value=1.2e-12  Score=123.94  Aligned_cols=185  Identities=10%  Similarity=-0.013  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       400 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      |+..|++.+...+....++..+|.++...|++++|+..+.+.+..+|  .+.+++..++.++...|+.+.|.+.++++.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            67788877776656677777888888888888888888888888776  7788888888888888888888888888888


Q ss_pred             hCCC------CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-
Q 006562          478 FEPN------SADILHERGIVNFKFK--DFNAAVEDLSACVKLDKE--NKSAYTYLGLALSSIGEYKKAEEAHLKAIQL-  546 (640)
Q Consensus       478 ~~p~------~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~-  546 (640)
                      .+|+      .......-+++.+..|  ++.+|...|+++....|+  .+..+++   ++..+|++++|...++.++.. 
T Consensus       165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHH
T ss_pred             cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhc
Confidence            8872      2223333344466556  888888888888777776  2333333   788888888888888877765 


Q ss_pred             ---------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Q 006562          547 ---------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH  589 (640)
Q Consensus       547 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  589 (640)
                               +|+++.++.+++.+...+|+  +|.++++++.+..|+++.+.-
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d  291 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH  291 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence                     47788888888888888887  788888888888888877643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.49  E-value=1.3e-12  Score=108.35  Aligned_cols=117  Identities=29%  Similarity=0.353  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      ...++.+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            45566666666666666666666666666666666666666666666666666666666666666666666666777777


Q ss_pred             hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcC
Q 006562          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG  633 (640)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  633 (640)
                      ..|++++|+.++++++..+|+++.++..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            7777777777777777667766666666666665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.48  E-value=3.7e-13  Score=112.17  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHHHH
Q 006562          519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYHLR  591 (640)
Q Consensus       519 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~~l  591 (640)
                      ++..+|..++..|++++|+..|++++.++|+++.+|.++|.+|..+|++++|+..++++++++|++       ..++..+
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            444455555555555555555555555555555555555555555555555555555555554432       1345556


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhccCCCCHHHH
Q 006562          592 GLLLHGLGQHKKAIKDLSSGLGIDPSNIECL  622 (640)
Q Consensus       592 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  622 (640)
                      |.++..+|++++|+.+|++++...|+ ++..
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~~~~~-~~~~  119 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLSEFRD-PELV  119 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence            66666666666666666666666554 4433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.48  E-value=2.7e-12  Score=106.34  Aligned_cols=110  Identities=33%  Similarity=0.450  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF  496 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  496 (640)
                      +++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.++.++..+|.++...
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            33333333333344444444444443333333333333343333334444444444443333333333333333333333


Q ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          497 KDFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (640)
Q Consensus       497 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (640)
                      |++++|+..+++++..+|.++.++..++.+
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  120 (125)
T 1na0_A           91 GDYDEAIEYYQKALELDPNNAEAKQNLGNA  120 (125)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            444444444444333333333333333333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=4.8e-13  Score=113.32  Aligned_cols=104  Identities=20%  Similarity=0.196  Sum_probs=51.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHH
Q 006562          480 PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ  559 (640)
Q Consensus       480 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~  559 (640)
                      |.++..+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            34444445555555555555555555555555555554455555555555555555555555555444444444445555


Q ss_pred             HHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          560 FYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       560 ~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      ++...|++++|+..|++++...|+
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChh
Confidence            554455555555555544444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.47  E-value=6.3e-14  Score=144.77  Aligned_cols=159  Identities=13%  Similarity=0.086  Sum_probs=91.7

Q ss_pred             cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          394 EGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLS  473 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  473 (640)
                      .+++++|+..|+.++...|..+..+..+|.+++..|+|++|+..|+++++..|.+....            .+.      
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~------  308 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLS------------EKE------  308 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC------------HHH------
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCC------------hHH------
Confidence            34555666666666666666666666666666666666666666666666666552100            000      


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH
Q 006562          474 KALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA  553 (640)
Q Consensus       474 ~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  553 (640)
                       ..+..+....++..+|.++..+|++++|+..+++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..+
T Consensus       309 -~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a  387 (457)
T 1kt0_A          309 -SKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA  387 (457)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Confidence             0000111145566666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcCHHHHH
Q 006562          554 WGHLTQFYQDLANSEKAL  571 (640)
Q Consensus       554 ~~~la~~~~~~g~~~~A~  571 (640)
                      +..++.++...+++++|.
T Consensus       388 ~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          388 RLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666666666666666554

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.47  E-value=1.1e-12  Score=111.19  Aligned_cols=105  Identities=20%  Similarity=0.216  Sum_probs=70.5

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      .+.++..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++..+|.++.++..+|
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Q 006562          457 QARAALGESVEAIQDLSKALEFEPN  481 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~  481 (640)
                      .++...|++++|+..|++++...|+
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChh
Confidence            6666666666666666666666655

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.47  E-value=5.3e-13  Score=116.81  Aligned_cols=90  Identities=19%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH-HHHHHH
Q 006562          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI-ECLYLR  625 (640)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l  625 (640)
                      +|....++.++|.++..+|++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++.++|++. .+...+
T Consensus        59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l  138 (162)
T 3rkv_A           59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM  138 (162)
T ss_dssp             HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            5566677777777777777777777777777777777777777777777777777777777777777777777 556666


Q ss_pred             HHHHHHcCCcc
Q 006562          626 ASCYHAIGEYR  636 (640)
Q Consensus       626 a~~~~~~g~~~  636 (640)
                      +.+....++..
T Consensus       139 ~~~~~~~~~~~  149 (162)
T 3rkv_A          139 KIVTERRAEKK  149 (162)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            66665554443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.47  E-value=5e-14  Score=145.50  Aligned_cols=133  Identities=21%  Similarity=0.217  Sum_probs=83.0

Q ss_pred             hhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHH
Q 006562          371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---------------PEALIGRGTARAFQRELEAAI  435 (640)
Q Consensus       371 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---------------~~~~~~la~~~~~~g~~~~A~  435 (640)
                      .......|..+..+..+|..++..|+|++|+..|+++++.+|.+               ..+++++|.++..+|++++|+
T Consensus       258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~  337 (457)
T 1kt0_A          258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV  337 (457)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            33344566778899999999999999999999999999999987               345555555555555555555


Q ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006562          436 SDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV  503 (640)
Q Consensus       436 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~  503 (640)
                      ..|+++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.
T Consensus       338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.46  E-value=6e-13  Score=109.74  Aligned_cols=101  Identities=17%  Similarity=0.161  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      .++.+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++.+|+++.++..+|.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 006562          463 GESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~~  483 (640)
                      |++++|+..++++++.+|.+.
T Consensus        99 g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHhCcCCC
Confidence            999999999999998888764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.46  E-value=2.4e-12  Score=105.43  Aligned_cols=113  Identities=18%  Similarity=0.153  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      ...++.+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45666677777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      ..|++++|+..++++++.+|+++.++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            777777777777777777777777777766654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.45  E-value=3.8e-12  Score=104.20  Aligned_cols=113  Identities=19%  Similarity=0.256  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45566667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      ..|++++|+..++++++..|.++.++..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            777777777777777777776666666665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.45  E-value=6e-13  Score=109.75  Aligned_cols=99  Identities=16%  Similarity=0.092  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG  599 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  599 (640)
                      ++.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|+++.++..+|.++...|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CHHHHHHHHHHhhccCCCC
Q 006562          600 QHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       600 ~~~~A~~~~~~al~~~p~~  618 (640)
                      ++++|+..|+++++.+|++
T Consensus       100 ~~~~A~~~~~~al~~~P~~  118 (121)
T 1hxi_A          100 NANAALASLRAWLLSQPQY  118 (121)
T ss_dssp             HHHHHHHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHHhCcCC
Confidence            5555555555555555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.45  E-value=7.3e-13  Score=111.65  Aligned_cols=104  Identities=22%  Similarity=0.295  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh----
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM-------YPE-----ALIGRGTARAFQRELEAAISDFTEAIQS----  444 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~----  444 (640)
                      ...++..|..++..|+|++|+..|+++++.+|+       +..     +|.++|.++..+|++++|+..|++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            667888999999999999999999999999998       333     7777777777777777777777777777    


Q ss_pred             ---CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 006562          445 ---NPSAGEAW----KRRGQARAALGESVEAIQDLSKALEFEPNSAD  484 (640)
Q Consensus       445 ---~p~~~~~~----~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~  484 (640)
                         +|+++.+|    +.+|.++..+|++++|+..|++++++.|++..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence               77777777    77777777777777777777777777666543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.43  E-value=3.4e-13  Score=113.39  Aligned_cols=105  Identities=13%  Similarity=0.186  Sum_probs=89.8

Q ss_pred             hcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562           48 SLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELH----------KHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (640)
Q Consensus        48 ~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~----------~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~  116 (640)
                      +.+.|++|+..|.++++++ .++..|+++|.++..+|++          ++|+..|++||+++|++.++|+.+|.+|.++
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            4457899999999999999 5667799999999999886          5999999999999999999999999999998


Q ss_pred             C-----------CHHHHHHHHHHHHhhccCChHHHHHHHhHHHHHHHH
Q 006562          117 G-----------RKEEALSVWEKGYEHALHQSADLKQFLELEELLTAA  153 (640)
Q Consensus       117 g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~  153 (640)
                      |           ++++|+.+|++|++++|+.+..... +++.+....+
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a-l~~~~ka~el  140 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS-LEMTAKAPQL  140 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHTHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHhCHhc
Confidence            5           8999999999999999998655433 4444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.42  E-value=3.6e-12  Score=116.02  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc------cH
Q 006562          485 ILHERGIVNFKFKDFNAAVEDLSACVKL---DKEN----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN------FL  551 (640)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~  551 (640)
                      ++..+|.++...|++++|+.++++++..   .+++    ..++..+|.++...|++++|+..+++++...+.      ..
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  147 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA  147 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3344444444444444444444444433   1111    223444444444444444444444444432111      02


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562          552 EAWGHLTQFYQDLANSEKALECLQQVLYI  580 (640)
Q Consensus       552 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (640)
                      .++..+|.++...|++++|+.++++++..
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            23344555555555555555555554443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.9e-12  Score=109.15  Aligned_cols=116  Identities=21%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH
Q 006562          514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL  590 (640)
Q Consensus       514 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  590 (640)
                      |.+...++.+|..+...|++++|+..|++++...|++   ..++..+|.++...|++++|+..+++++...|.++.+++.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4455556666666666666666666666666666655   5666666666666666666666666666666666666666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 006562          591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       591 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      +|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            666666666666666666666666666666666555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.41  E-value=2.9e-12  Score=116.71  Aligned_cols=157  Identities=13%  Similarity=0.045  Sum_probs=122.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCH
Q 006562          460 AALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKL------DKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~g~~  533 (640)
                      +..|++++|...++......+....++..+|.++...|++++|+.++++++..      .+....++..+|.++...|++
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45677777777544444333345667788888888888888888888888773      344567889999999999999


Q ss_pred             HHHHHHHHHHHcc---Cc----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHhcCC
Q 006562          534 KKAEEAHLKAIQL---DR----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK--RF----SKAYHLRGLLLHGLGQ  600 (640)
Q Consensus       534 ~~A~~~~~~a~~~---~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~~~~la~~~~~~g~  600 (640)
                      ++|+..+++++..   .+    ....++..+|.++...|++++|+.++++++...+  .+    ..++..+|.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            9999999999987   33    3356789999999999999999999999987643  22    2356899999999999


Q ss_pred             HHHHHHHHHHhhccCC
Q 006562          601 HKKAIKDLSSGLGIDP  616 (640)
Q Consensus       601 ~~~A~~~~~~al~~~p  616 (640)
                      +++|+.++++++++..
T Consensus       163 ~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          163 LLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999997643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.41  E-value=5.3e-12  Score=108.31  Aligned_cols=120  Identities=21%  Similarity=0.230  Sum_probs=102.0

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY---PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      ..+.++..++.+|..++..|++++|+..|+++++.+|++   ..++..+|.++...|++++|+..+++++..+|.++.++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            456678888889999999999999999999999988887   78888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (640)
                      +.+|.++...|++++|+.+|++++..+|.+..++..++.+...
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            8888888888888888888888888888888887777766543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.40  E-value=6.6e-12  Score=104.91  Aligned_cols=109  Identities=20%  Similarity=0.240  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---HHHHHHHHH
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKEDPMYP---EALIGRGTARAFQRELEAAISDFTEAIQSNPSA---GEAWKRRGQ  457 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~  457 (640)
                      ++.+|..++..|++++|+..|+++++.+|+++   .+++.+|.++...|++++|+..|++++..+|++   +.+++.+|.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            45566666666666666666666666666665   566666666666666666666666666666666   566666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006562          458 ARAALGESVEAIQDLSKALEFEPNSADILHERGIV  492 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  492 (640)
                      ++...|++++|+..|++++...|+++.+......+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            66666666666666666666666665554444333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.39  E-value=9.8e-12  Score=103.87  Aligned_cols=111  Identities=13%  Similarity=0.007  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 006562          417 ALIGRGTARAFQRELEAAISDFTEAIQSNPSAG---EAWKRRGQARAALGESVEAIQDLSKALEFEPNS---ADILHERG  490 (640)
Q Consensus       417 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la  490 (640)
                      +++.+|.++...|++++|+..|++++...|+++   .+++.+|.++...|++++|+..|++++...|++   +.+++.+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            356667777777777777777777777776665   566677777777777777777777777777766   66666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          491 IVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       491 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      .++...|++++|+..|++++...|+++.+......+.
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~  120 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ  120 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence            7777777777777777777777666665555444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.38  E-value=4.7e-12  Score=105.91  Aligned_cols=117  Identities=17%  Similarity=0.100  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-------hHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-------SKAYH  589 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-------~~~~~  589 (640)
                      +..++.+|.++...|++++|+..|.+++...|.++.++..+|.++...|++++|+.++++++...|.+       +.++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            34555566666666666666666666666666666666666666666666666666666666655544       55666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       590 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      .+|.++...|++++|+.+|+++++..| ++..+..++.+...+++
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666 36666666666555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.38  E-value=1.3e-12  Score=107.15  Aligned_cols=92  Identities=11%  Similarity=0.036  Sum_probs=81.5

Q ss_pred             hcCCHHHHHHHHHHHHcc---c-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 006562           48 SLRNWSKAIRILDSLLAQ---S-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEAL  123 (640)
Q Consensus        48 ~~~~y~~Ai~~y~~ai~~---~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~  123 (640)
                      ..|+|++|+.+|++++++   + .++.+++++|.+|..+|+|++|+..++++++.+|+++.+++.+|.+|..+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   4 344668999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCChHH
Q 006562          124 SVWEKGYEHALHQSAD  139 (640)
Q Consensus       124 ~~~~~al~~~~~~~~~  139 (640)
                      ..|++++++.|..+..
T Consensus        82 ~~~~~al~~~p~~~~~   97 (117)
T 3k9i_A           82 ELLLKIIAETSDDETI   97 (117)
T ss_dssp             HHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHhCCCcHHH
Confidence            9999999999988654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.36  E-value=1e-11  Score=103.73  Aligned_cols=114  Identities=14%  Similarity=0.122  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc-------HHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA-------GEAWK  453 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~  453 (640)
                      +..++.+|..++..|++++|+..|++++..+|.++.++..+|.++...|++++|+.++++++...|.+       +.++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45666777777777777777777777777777777777777777777777777777777777766654       66666


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 006562          454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFK  495 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  495 (640)
                      .+|.++...|++++|+..|++++...| ++.....++.+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            677777777777777777777777666 45555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.35  E-value=3.3e-13  Score=139.84  Aligned_cols=133  Identities=20%  Similarity=0.188  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHh
Q 006562          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL  564 (640)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  564 (640)
                      .+..+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..++++++.+|.++.++..+|.+|..+
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34556667777788888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHhcCCHHHHHHHHH-----------HhhccCCC
Q 006562          565 ANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQHKKAIKDLS-----------SGLGIDPS  617 (640)
Q Consensus       565 g~~~~A~~~~~~al~~~~~~~~~~~~la~~--~~~~g~~~~A~~~~~-----------~al~~~p~  617 (640)
                      |++++|+..|+++++.+|++..++..++.+  +...|++++|+..++           +++.+.|+
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~  153 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE  153 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence            888888888888888888777777777777  777788888888888           66666654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.35  E-value=4.6e-12  Score=102.65  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHH
Q 006562          513 DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHL  590 (640)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~  590 (640)
                      +|++...+..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.  +..++..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            34455555556666666666666666666666666655666666666666666666666666666666666  6666666


Q ss_pred             HHHHHHhc-CCHHHHHHHHHHhhccCCCC
Q 006562          591 RGLLLHGL-GQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       591 la~~~~~~-g~~~~A~~~~~~al~~~p~~  618 (640)
                      +|.++... |++++|+.++++++...|++
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            66666666 66666666666666655543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.35  E-value=5.6e-12  Score=102.16  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=41.7

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPN--SADILHERGI  491 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~  491 (640)
                      ++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.  +..++..+|.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444444444444444444444444  3444444444


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHhCC
Q 006562          492 VNFKF-KDFNAAVEDLSACVKLDK  514 (640)
Q Consensus       492 ~~~~~-~~~~~A~~~~~~al~~~~  514 (640)
                      ++... |++++|+.++++++...|
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhccc
Confidence            44444 444444444444443333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.35  E-value=1.6e-11  Score=126.52  Aligned_cols=200  Identities=9%  Similarity=0.006  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYP-----------------EALIGRGTARAFQRELEAAISDFTEAIQ  443 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~  443 (640)
                      |...+..|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45577789999999999999999999999887642                 4688999999999999999999999988


Q ss_pred             hCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562          444 SNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEP------NSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (640)
Q Consensus       444 ~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (640)
                      ..+...      .+...++.++...|++++|+..+++++...+      ....++..+|.++...|++.+|...+.+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            765432      3456678888889999999999999987643      2256888999999999999999999999987


Q ss_pred             hC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcc---c----HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562          512 LD------KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN---F----LEAWGHLTQFYQDLANSEKALECLQQVL  578 (640)
Q Consensus       512 ~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~----~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (640)
                      ..      +....++..+|.+|...|++++|...+++++...+.   .    ...+..+|.++...|++++|..+|..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            52      333678999999999999999999999999876432   1    4567788999999999999999999998


Q ss_pred             Hh
Q 006562          579 YI  580 (640)
Q Consensus       579 ~~  580 (640)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.35  E-value=3.3e-13  Score=139.89  Aligned_cols=136  Identities=19%  Similarity=0.217  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+..+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..++++++.+|+++.++..+|.+|.
T Consensus         6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~   85 (477)
T 1wao_1            6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   85 (477)
T ss_dssp             HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44556678888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCc
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIV--NFKFKDFNAAVEDLS-----------ACVKLDKEN  516 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~~~~~~A~~~~~-----------~al~~~~~~  516 (640)
                      .+|++++|+..|+++++..|++..++..++.+  +...|++++|+..++           +++...|+.
T Consensus        86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999999999999999999999888  888999999999999           777666543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=1.1e-12  Score=129.56  Aligned_cols=154  Identities=15%  Similarity=0.073  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+..+|..++..|+|++|+..|++++...|.+..        +...|++.++...+.         ..++..+|.++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHHH
Confidence            667889999999999999999999999999987541        223444555443332         236778888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCCHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL-SSIGEYKKAEEA  539 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~-~~~g~~~~A~~~  539 (640)
                      ..|++++|+..+++++.++|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.+. ...+..+++...
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~  321 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM  321 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888888888888888888888888888888888888888773 445667777888


Q ss_pred             HHHHHccCcccH
Q 006562          540 HLKAIQLDRNFL  551 (640)
Q Consensus       540 ~~~a~~~~~~~~  551 (640)
                      |.+++...|.++
T Consensus       322 ~~~~l~~~p~~~  333 (338)
T 2if4_A          322 YKGIFKGKDEGG  333 (338)
T ss_dssp             ------------
T ss_pred             HHHhhCCCCCCC
Confidence            888888877654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.34  E-value=3.1e-12  Score=104.89  Aligned_cols=107  Identities=14%  Similarity=0.100  Sum_probs=68.7

Q ss_pred             cCCHHHHHHHHHHHHcc---CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH
Q 006562          530 IGEYKKAEEAHLKAIQL---DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIK  606 (640)
Q Consensus       530 ~g~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  606 (640)
                      .|++++|+..|++++..   +|.++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45666667777777666   466666677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhhccCCCCHHHHHHHHHHHHHcCCcc
Q 006562          607 DLSSGLGIDPSNIECLYLRASCYHAIGEYR  636 (640)
Q Consensus       607 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~  636 (640)
                      .+++++...|+++.+......+....+.++
T Consensus        83 ~~~~al~~~p~~~~~~~~~~ai~~~~~~l~  112 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQSYKQAILFYADKLD  112 (117)
T ss_dssp             HHHHHHHHHCCCHHHHHTHHHHHHHTTCTT
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence            777777776666666555554544444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.34  E-value=1.2e-12  Score=129.40  Aligned_cols=161  Identities=15%  Similarity=0.089  Sum_probs=85.6

Q ss_pred             HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 006562          408 LKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH  487 (640)
Q Consensus       408 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  487 (640)
                      ++..+.....+..+|..++..|++++|+..|++++...|.+..        +...+++.++...+.         ..++.
T Consensus       172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~  234 (338)
T 2if4_A          172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHL  234 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHH
Confidence            3334445677788888888888888888888888888776541        223344444443321         13677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH-HHHhcC
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF-YQDLAN  566 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~-~~~~g~  566 (640)
                      .+|.++...|++++|+.++++++.++|++..+++.+|.++..+|++++|+..|++++.++|++..++..++.+ ....+.
T Consensus       235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            7788888888888888888888888887777888888888888888888888888877777777777777776 334456


Q ss_pred             HHHHHHHHHHHHHhCCCCh
Q 006562          567 SEKALECLQQVLYIDKRFS  585 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~~~~  585 (640)
                      .+.+...|.+++...|.++
T Consensus       315 ~~~a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          315 YQKQKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             -------------------
T ss_pred             HHHHHHHHHHhhCCCCCCC
Confidence            6677777777777766543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.34  E-value=4.2e-11  Score=123.32  Aligned_cols=200  Identities=11%  Similarity=0.058  Sum_probs=169.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-----------------EAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      |......|..+...|+|++|++.|.++++..|...                 .++..+|.+|...|++++|++++.+++.
T Consensus         4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45567788889999999999999999999887642                 3688899999999999999999999998


Q ss_pred             hCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          478 FEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKLDK------ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       478 ~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ..+...      .+...++.++...|+++.|+.++++++...+      ....++..+|.++...|++++|...+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~  163 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR  163 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence            765542      2456678888889999999999999987642      2367889999999999999999999999876


Q ss_pred             c------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006562          546 L------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK---RF----SKAYHLRGLLLHGLGQHKKAIKDLSSGL  612 (640)
Q Consensus       546 ~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al  612 (640)
                      .      .+....++..+|.+|...|++++|..++++++...+   ..    ...+..+|.++...|++.+|..+|..++
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            5      344478999999999999999999999999987643   22    3467788999999999999999999997


Q ss_pred             cc
Q 006562          613 GI  614 (640)
Q Consensus       613 ~~  614 (640)
                      ..
T Consensus       244 ~~  245 (434)
T 4b4t_Q          244 ES  245 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.34  E-value=6.2e-12  Score=105.73  Aligned_cols=90  Identities=20%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH----------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          393 NEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELE----------AAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       393 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~----------~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      +.+.|++|+..++++++.+|+++.+|+.+|.++...++++          +|+..|+++++++|++..+|+.+|.+|..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            3456788888888888888888888888888888877654          666666666666666666666666666665


Q ss_pred             C-----------CHHHHHHHHHHHHHhCCCC
Q 006562          463 G-----------ESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       463 ~-----------~~~~A~~~~~~al~~~p~~  482 (640)
                      |           ++++|+.+|+++++++|++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~  124 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDN  124 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence            4           4444444444444444443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.32  E-value=1.2e-11  Score=123.42  Aligned_cols=138  Identities=17%  Similarity=0.190  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHH
Q 006562          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ  562 (640)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  562 (640)
                      ...+..+|..++..|++++|+..|+++++..+..+                  +...........|....++.++|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999998543221                  011123333455556666666666666


Q ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcccc
Q 006562          563 DLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA  638 (640)
Q Consensus       563 ~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A  638 (640)
                      .+|++++|+.+++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++++++
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666666666666655543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.32  E-value=1.7e-08  Score=104.52  Aligned_cols=203  Identities=7%  Similarity=-0.089  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          398 ASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       398 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      ......|++++...|..+..|+..+..+...|+.+.|...|++++.. |.+...+...+... ..+   +.   ++++..
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~~  267 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLKR  267 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHHH
Confidence            45678999999999999999999999999999999999999999999 98877666554431 111   11   222221


Q ss_pred             h---C----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHH
Q 006562          478 F---E----------PNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG-EYKKAEEAHLKA  543 (640)
Q Consensus       478 ~---~----------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~a  543 (640)
                      .   .          +....+|...+....+.++.+.|...|.++ ...+.....|...|.+....+ +.+.|...|+.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a  346 (493)
T 2uy1_A          268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG  346 (493)
T ss_dssp             HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence            1   0          112356777888888888999999999999 433335667776777766666 699999999999


Q ss_pred             HccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          544 IQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       544 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      +...|+.+..+...+......|+.+.|..+|+++    +.....|......-...|+.+.+...+++++.
T Consensus       347 l~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          347 LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999998888888888888999999999999997    34677888888888888999999998888874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.31  E-value=2e-11  Score=121.88  Aligned_cols=140  Identities=18%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+..+|..++..|+|++|+..|+++++..+..+                  +...........|.+..++..+|.++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~  284 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL  284 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678899999999999999999999998432211                  001122233344445555666666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      .+|++++|+.+++++++++|.++.+++.+|.++...|++++|+..|+++++++|++..++..++.++...++++++.+
T Consensus       285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666666666666666666666666666666555555543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.26  E-value=4.4e-11  Score=104.12  Aligned_cols=137  Identities=20%  Similarity=0.185  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSA------DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  523 (640)
                      .++..+|.++...|++++|+.++++++...+...      .++..+|.++...|++++|+.++++++...+....     
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-----   84 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----   84 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-----
Confidence            3455566666666666666666666655533211      24445555555555555555555555544322100     


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHh
Q 006562          524 GLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK------RFSKAYHLRGLLLHG  597 (640)
Q Consensus       524 a~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~  597 (640)
                                             .+....++..+|.++...|++++|+.++++++...+      ....++..+|.++..
T Consensus        85 -----------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           85 -----------------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             -----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -----------------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence                                   000133444455555555555555555555544321      112345555555555


Q ss_pred             cCCHHHHHHHHHHhhcc
Q 006562          598 LGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       598 ~g~~~~A~~~~~~al~~  614 (640)
                      .|++++|+.++++++++
T Consensus       142 ~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          142 LGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HTCHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHH
Confidence            55555555555555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.25  E-value=7e-11  Score=102.81  Aligned_cols=131  Identities=19%  Similarity=0.181  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAG------EAWKRRGQARAALGESVEAIQDLSKALEFEPNS------  482 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------  482 (640)
                      ..++..+|.++...|++++|+.+++++++..+...      .++..+|.++...|++++|+.++++++...+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            56789999999999999999999999998765432      478899999999999999999999999875432      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       483 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      ..++..+|.++...|++++|+.++++++...+.      ...++..+|.++...|++++|+..+++++.
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            345667777777777777777777777655321      123344445555555555555555544443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.15  E-value=8.5e-08  Score=99.34  Aligned_cols=56  Identities=5%  Similarity=-0.097  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYL  523 (640)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l  523 (640)
                      .....|++++...|..+.+|...+..+...|+.+.|...|++++.. |.+...+...
T Consensus       197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y  252 (493)
T 2uy1_A          197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYY  252 (493)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            3556777777777777777777777777777777777777777777 7765544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.14  E-value=3.7e-10  Score=91.22  Aligned_cols=89  Identities=18%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC------HHHHHH
Q 006562          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN------IECLYL  624 (640)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  624 (640)
                      ...+..+|.++...|++++|+..|++++..+|.++.++..+|.++..+|++++|+..++++++++|++      ..+++.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45667777777777777777777777777777777777777777777777777777777777777777      677777


Q ss_pred             HHHHHHHcCCccccc
Q 006562          625 RASCYHAIGEYREAV  639 (640)
Q Consensus       625 la~~~~~~g~~~~Al  639 (640)
                      +|.++..+|+++.|+
T Consensus        84 ~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           84 LELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHhHhhhH
Confidence            777777777777665

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=1.3e-09  Score=84.25  Aligned_cols=85  Identities=26%  Similarity=0.316  Sum_probs=63.7

Q ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHH
Q 006562          549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASC  628 (640)
Q Consensus       549 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  628 (640)
                      ..+.++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+++++++.+|++..++..+|.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHcC
Q 006562          629 YHAIG  633 (640)
Q Consensus       629 ~~~~g  633 (640)
                      +..+|
T Consensus        87 ~~~~g   91 (91)
T 1na3_A           87 KQKQG   91 (91)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            76654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.06  E-value=1e-09  Score=89.37  Aligned_cols=82  Identities=18%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (640)
Q Consensus       399 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  478 (640)
                      .|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45666666777777777777777777777777777777777777777766666777777777777777777777776666


Q ss_pred             CC
Q 006562          479 EP  480 (640)
Q Consensus       479 ~p  480 (640)
                      .|
T Consensus        83 ~~   84 (115)
T 2kat_A           83 AQ   84 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            55

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.06  E-value=1.1e-09  Score=89.24  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (640)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (640)
                      .|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34555566666666666666666666666666666666666666666655555666666666666666666666665555


Q ss_pred             CC
Q 006562          581 DK  582 (640)
Q Consensus       581 ~~  582 (640)
                      .|
T Consensus        83 ~~   84 (115)
T 2kat_A           83 AQ   84 (115)
T ss_dssp             HH
T ss_pred             cc
Confidence            44

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.1e-10  Score=94.31  Aligned_cols=92  Identities=18%  Similarity=0.276  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------GEAWKR  454 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~  454 (640)
                      +..++.+|..++..|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            45566677777777777777777777777777777777777777777777777777777777777766      666666


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q 006562          455 RGQARAALGESVEAIQDL  472 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~  472 (640)
                      +|.++...|+++.|+..+
T Consensus        84 ~~~~~~~~~~~~~a~~~~  101 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEV  101 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSS
T ss_pred             HHHHHHHHHhHhhhHhHH
Confidence            666666666655554443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=3.1e-09  Score=82.10  Aligned_cols=83  Identities=28%  Similarity=0.382  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      ++..++.+|..+...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..++++++.+|.++.++..+|.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666666666666665


Q ss_pred             HHc
Q 006562          460 AAL  462 (640)
Q Consensus       460 ~~~  462 (640)
                      ...
T Consensus        88 ~~~   90 (91)
T 1na3_A           88 QKQ   90 (91)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.96  E-value=2.4e-09  Score=84.48  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=65.1

Q ss_pred             CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCC
Q 006562           67 YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQ  136 (640)
Q Consensus        67 ~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~  136 (640)
                      .++..++++|.+|+.+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|..
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4556789999999999999999999999999999999999999999999999999999999998876643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.91  E-value=6.9e-09  Score=81.83  Aligned_cols=86  Identities=17%  Similarity=0.141  Sum_probs=44.7

Q ss_pred             CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CHHHHHH
Q 006562          547 DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYL  624 (640)
Q Consensus       547 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~  624 (640)
                      +|+++.+++.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++++.|.  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            35555555555555555555555555555555555555555555555555555555555555555554432  2333344


Q ss_pred             HHHHHHHc
Q 006562          625 RASCYHAI  632 (640)
Q Consensus       625 la~~~~~~  632 (640)
                      +..++...
T Consensus        83 l~~~l~~~   90 (100)
T 3ma5_A           83 LQDAKLKA   90 (100)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            44444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.90  E-value=3.1e-09  Score=83.73  Aligned_cols=89  Identities=18%  Similarity=0.264  Sum_probs=60.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPE-ALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      +.+|..++..|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++.+|++..++..        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            45566777777777777777777777777777 77777777777777777777777777777776665532        4


Q ss_pred             CHHHHHHHHHHHHHhCCC
Q 006562          464 ESVEAIQDLSKALEFEPN  481 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~  481 (640)
                      .+.+++..|+++...+|+
T Consensus        76 ~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHHhccCcc
Confidence            455556666555555544

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.89  E-value=3.3e-08  Score=83.11  Aligned_cols=108  Identities=18%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHH
Q 006562          499 FNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECL  574 (640)
Q Consensus       499 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~  574 (640)
                      +++|+.+|+++.+......  .  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+|
T Consensus        11 ~~~A~~~~~~aa~~g~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~   84 (138)
T 1klx_A           11 LKKAIQYYVKACELNEMFG--C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY   84 (138)
T ss_dssp             HHHHHHHHHHHHHTTCTTH--H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHhh--h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence            4444444444444432211  1  444444444444444444444443  334444455555444    44555555555


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhcc
Q 006562          575 QQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~  614 (640)
                      +++.+.  .++.+++.+|.+|..    .+++++|+.+|+++.+.
T Consensus        85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            555443  344555555555555    45555555555555444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.88  E-value=7.7e-08  Score=92.67  Aligned_cols=146  Identities=14%  Similarity=0.161  Sum_probs=77.5

Q ss_pred             cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRG  456 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  456 (640)
                      ++.-++..|..++..++   +.+|+.+|+++++.+|+++.++..++.+|.....+             .|........  
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~-------------~~~~~~~~~~--  259 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ-------------HPLDEKQLAA--  259 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-------------SCCCHHHHHH--
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc-------------CCCchhhHHH--
Confidence            34445667777776554   47888889999999998888888888877621110             0111000000  


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 006562          457 QARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKA  536 (640)
Q Consensus       457 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A  536 (640)
                              ...+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ...+..+|.++...|++++|
T Consensus       260 --------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA  329 (372)
T 3ly7_A          260 --------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREA  329 (372)
T ss_dssp             --------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred             --------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHH
Confidence                    0111110 0122334555555555555555555555555555555555542 34445555555555555555


Q ss_pred             HHHHHHHHccCccc
Q 006562          537 EEAHLKAIQLDRNF  550 (640)
Q Consensus       537 ~~~~~~a~~~~~~~  550 (640)
                      +..|.+|+.++|..
T Consensus       330 ~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          330 ADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHHHHHHSCSH
T ss_pred             HHHHHHHHhcCCCc
Confidence            55555555555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.86  E-value=5.5e-09  Score=82.26  Aligned_cols=88  Identities=14%  Similarity=0.044  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcccHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCC
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLE-AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ  600 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~  600 (640)
                      ..|.++...|++++|+..|++++..+|.++. ++..+|.++...|++++|+..|++++..+|+++.++..        +.
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~   76 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM   76 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence            4455555556666666666666666665555 66666666666666666666666666666655554432        34


Q ss_pred             HHHHHHHHHHhhccCCC
Q 006562          601 HKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       601 ~~~A~~~~~~al~~~p~  617 (640)
                      +.+++..|+++...+|+
T Consensus        77 ~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           77 VMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHhccCcc
Confidence            45555555555554444

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.86  E-value=1e-07  Score=91.88  Aligned_cols=157  Identities=13%  Similarity=0.101  Sum_probs=116.1

Q ss_pred             HHHHhCCCCHHHH--HHHHHHHHHcc---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562          406 QILKEDPMYPEAL--IGRGTARAFQR---ELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP  480 (640)
Q Consensus       406 ~~l~~~~~~~~~~--~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  480 (640)
                      ++....|.++.+|  +..|..+...+   +..+|+.+|+++++.+|+++.++..++.+|...             ....|
T Consensus       185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~-------------~~~~~  251 (372)
T 3ly7_A          185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVR-------------HSQHP  251 (372)
T ss_dssp             HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-------------HHHSC
T ss_pred             HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------hccCC
Confidence            3445566665443  45566666544   457899999999999999999998888887711             11112


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH
Q 006562          481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF  560 (640)
Q Consensus       481 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~  560 (640)
                      ........          ...+... ..++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.+
T Consensus       252 ~~~~~~~~----------l~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~  319 (372)
T 3ly7_A          252 LDEKQLAA----------LNTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKV  319 (372)
T ss_dssp             CCHHHHHH----------HHHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred             CchhhHHH----------HHHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHH
Confidence            22211111          1223331 1344677999999999999999999999999999999999975 7788999999


Q ss_pred             HHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562          561 YQDLANSEKALECLQQVLYIDKRFSKA  587 (640)
Q Consensus       561 ~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (640)
                      +...|++++|++.|.+++.++|..+..
T Consensus       320 ~~~~G~~~eA~e~~~~AlrL~P~~~t~  346 (372)
T 3ly7_A          320 YEMKGMNREAADAYLTAFNLRPGANTL  346 (372)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence            999999999999999999999987643

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=7.5e-08  Score=80.89  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 006562          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQD  471 (640)
Q Consensus       396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~  471 (640)
                      ++++|+.+|+++.+.....  +.  +|.+|...+..++|+.+|+++.+.  .++.+++.+|.+|..    .+++++|+.+
T Consensus        10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4555555555555544222  22  555555555555555555555544  345555555555555    4555555555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 006562          472 LSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKL  512 (640)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  512 (640)
                      |+++.+.  .++.+.+.+|.+|..    .+++++|+.+|+++.+.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            5555544  345555555555555    45555555555555544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.83  E-value=1.9e-07  Score=85.89  Aligned_cols=85  Identities=21%  Similarity=0.153  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHccCcc--cHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHh-cCCHHH
Q 006562          533 YKKAEEAHLKAIQLDRN--FLEAWGHLTQFYQDL-----ANSEKALECLQQVLYIDKRF-SKAYHLRGLLLHG-LGQHKK  603 (640)
Q Consensus       533 ~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~g~~~~  603 (640)
                      ...|...++++++++|+  +..+|..+|.+|...     |+.++|..+|+++++++|+. ..+++.+|..+.. .|++++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            34555555555555555  344555555555553     55666666666666666543 5555555555555 355566


Q ss_pred             HHHHHHHhhccCCC
Q 006562          604 AIKDLSSGLGIDPS  617 (640)
Q Consensus       604 A~~~~~~al~~~p~  617 (640)
                      |..++++++..+|.
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            66666665554443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.80  E-value=2.4e-07  Score=85.28  Aligned_cols=186  Identities=16%  Similarity=0.094  Sum_probs=132.0

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--------------LEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      ..-.+..++-.+..+|++.......|..|..-+.              ++.....+.++.++.-. . ..+.+.-+....
T Consensus        48 ~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~r-a-~~y~~raL~~~~  125 (301)
T 3u64_A           48 LPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLR-G-ARYALSSLETAY  125 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHS
T ss_pred             ccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHH-H-HHHHHHHHHHhC
Confidence            4567888899999999999988888877754321              11111222222221100 0 011111122233


Q ss_pred             CCHHHHHHH-----HHHHH-HhCCCCHHHHHHHHHHHHh-----cC------CHHHHHHHHHHHHHhCCC--cHHHHHHH
Q 006562          463 GESVEAIQD-----LSKAL-EFEPNSADILHERGIVNFK-----FK------DFNAAVEDLSACVKLDKE--NKSAYTYL  523 (640)
Q Consensus       463 ~~~~~A~~~-----~~~al-~~~p~~~~~~~~la~~~~~-----~~------~~~~A~~~~~~al~~~~~--~~~~~~~l  523 (640)
                      ..+.+++..     +..++ ..+|++++.++..|.+...     .|      ....|...++++++++|+  +..+|..+
T Consensus       126 ~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~L  205 (301)
T 3u64_A          126 PGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVL  205 (301)
T ss_dssp             TTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             ccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence            555555443     23333 4567788887777766543     13      367899999999999999  67899999


Q ss_pred             HHHHHHc-----CCHHHHHHHHHHHHccCccc-HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCC
Q 006562          524 GLALSSI-----GEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQD-LANSEKALECLQQVLYIDKRF  584 (640)
Q Consensus       524 a~~~~~~-----g~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~  584 (640)
                      |.+|...     |+.++|..+|+++++++|+. ...++.+|..+.. .|+++.|..++++++...|..
T Consensus       206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            9999995     99999999999999999975 9999999999988 499999999999999988763

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.73  E-value=6.2e-08  Score=99.45  Aligned_cols=125  Identities=14%  Similarity=-0.001  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCc---H
Q 006562          454 RRGQARAALGESVEAIQDLSKALEF-----EPNSA---DILHERGIVNFKFKDFNAAVEDLSACVKL-----DKEN---K  517 (640)
Q Consensus       454 ~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~---~  517 (640)
                      ..+..+...|+|++|+..+++++++     .|+++   .++..+|.+|..+|+|++|+.++++++..     .|++   .
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            3444455667777777777776654     23333   34556666666666666666666666543     1222   3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----C---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQL-----D---RNFLEAWGHLTQFYQDLANSEKALECLQQVL  578 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~-----~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (640)
                      ..+.++|.+|..+|++++|+.++++++.+     .   |........++.++..++.+.+|...|.++.
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~  462 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR  462 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555555543     1   2223333445555555555555555555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.71  E-value=1e-07  Score=97.84  Aligned_cols=130  Identities=8%  Similarity=0.004  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH-
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQS-----NPSA---GEAWKRRGQARAALGESVEAIQDLSKALEF-----EPNSA-  483 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~-  483 (640)
                      ....+..+..+|+|++|+..++++++.     .|++   ...+..+|.+|..+|+|++|+.++++++.+     .|+++ 
T Consensus       312 ~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  391 (490)
T 3n71_A          312 TLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ  391 (490)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            444556677888899999988888864     3344   456778888888899999999998888865     45554 


Q ss_pred             --HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q 006562          484 --DILHERGIVNFKFKDFNAAVEDLSACVKL-----DKENK---SAYTYLGLALSSIGEYKKAEEAHLKAIQLD  547 (640)
Q Consensus       484 --~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  547 (640)
                        ..+.++|.+|..+|++++|+.++++++.+     .|+++   .....++.++..++.+++|...|.++.+..
T Consensus       392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              46788888888899999999999888864     35554   455678888888888888888888875443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.58  E-value=5e-07  Score=69.34  Aligned_cols=71  Identities=14%  Similarity=0.139  Sum_probs=47.3

Q ss_pred             CcccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 006562          377 KSISVDFRLSRGIAQVNEGK---YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS  447 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  447 (640)
                      +|.+++.+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45566666666666655444   566666666666666666666666666666666666666666666666665

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.54  E-value=1.1e-06  Score=88.73  Aligned_cols=99  Identities=8%  Similarity=0.029  Sum_probs=83.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHccc-----CchhH----HHhHHHHHHhhhcHHHHHHHHHHHHHcC-----CCchH--
Q 006562           41 IELAKLCSLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTLLQ--  104 (640)
Q Consensus        41 ~~~~~~~~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~~A~~~~~~g~~~~Ai~~~~~al~~~-----P~~~~--  104 (640)
                      ..+.++..+|+|++|+..|++++++.     +++..    +.++|.+|..+|+|++|+..++++|.+.     |+++.  
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            34667889999999999999999763     44433    7899999999999999999999999864     55555  


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----ccCChHH
Q 006562          105 -AYILKGCAFSALGRKEEALSVWEKGYEH-----ALHQSAD  139 (640)
Q Consensus       105 -a~~~~g~~y~~~g~~~~A~~~~~~al~~-----~~~~~~~  139 (640)
                       .++.+|.+|..+|++++|+..|++|+++     .|++|.-
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~  412 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI  412 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence             8999999999999999999999999876     5666543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.53  E-value=6.5e-07  Score=68.68  Aligned_cols=72  Identities=14%  Similarity=0.076  Sum_probs=49.0

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562          411 DPMYPEALIGRGTARAFQRE---LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       411 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (640)
                      +|+++..+..+|.+++..++   .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            46666777777776665544   5667777777777777777777777777777777777777777777666653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.50  E-value=1.6e-06  Score=71.87  Aligned_cols=87  Identities=14%  Similarity=0.007  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006562          502 AVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECLQQ  576 (640)
Q Consensus       502 A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (640)
                      +.+.|.+.+..++.+..+.+.+|+++...+   +.++++..++..+..+ | ...++++++|..+++.|+|++|..++++
T Consensus        17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~   96 (152)
T 1pc2_A           17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG   96 (152)
T ss_dssp             HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            334444444444444444444444444444   3334444444444444 3 2344444444444444444444444444


Q ss_pred             HHHhCCCChHHH
Q 006562          577 VLYIDKRFSKAY  588 (640)
Q Consensus       577 al~~~~~~~~~~  588 (640)
                      +++.+|++..+.
T Consensus        97 lL~ieP~n~QA~  108 (152)
T 1pc2_A           97 LLQTEPQNNQAK  108 (152)
T ss_dssp             HHHHCTTCHHHH
T ss_pred             HHhcCCCCHHHH
Confidence            444444444433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.48  E-value=1.8e-06  Score=71.66  Aligned_cols=89  Identities=10%  Similarity=0.033  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006562          399 SAISIFDQILKEDPMYPEALIGRGTARAFQR---ELEAAISDFTEAIQSN-P-SAGEAWKRRGQARAALGESVEAIQDLS  473 (640)
Q Consensus       399 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~  473 (640)
                      .+.+.|.+.+..++.+.++.+.+|.++...+   +.++++.+++.+++.+ | .+.++++.+|..+++.|+|++|..+++
T Consensus        16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            3444455555555555666666666665555   4445666666666555 4 345555666666666666666666666


Q ss_pred             HHHHhCCCCHHHHH
Q 006562          474 KALEFEPNSADILH  487 (640)
Q Consensus       474 ~al~~~p~~~~~~~  487 (640)
                      ++++..|++..+..
T Consensus        96 ~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           96 GLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHCTTCHHHHH
T ss_pred             HHHhcCCCCHHHHH
Confidence            66666665554443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.48  E-value=8.7e-07  Score=89.36  Aligned_cols=85  Identities=9%  Similarity=0.012  Sum_probs=74.1

Q ss_pred             hcCCHHHHHHHHHHHHccc-----CchhH----HHhHHHHHHhhhcHHHHHHHHHHHHHcC-----CCchH---HHHHHH
Q 006562           48 SLRNWSKAIRILDSLLAQS-----YEIQD----ICNRAFCYSQLELHKHVIRDCDKALQLD-----PTLLQ---AYILKG  110 (640)
Q Consensus        48 ~~~~y~~Ai~~y~~ai~~~-----~~~~~----~~~~A~~~~~~g~~~~Ai~~~~~al~~~-----P~~~~---a~~~~g  110 (640)
                      ..|+|++|+..|++++++.     +++..    +.++|.+|..+|+|++|+..++++|.+.     |+++.   .+..+|
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4689999999999998753     44433    7899999999999999999999999874     55555   899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhh
Q 006562          111 CAFSALGRKEEALSVWEKGYEH  132 (640)
Q Consensus       111 ~~y~~~g~~~~A~~~~~~al~~  132 (640)
                      .+|..+|++++|+..|++|+++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHH
Confidence            9999999999999999999876

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.39  E-value=3.5e-06  Score=66.50  Aligned_cols=77  Identities=16%  Similarity=0.038  Sum_probs=52.9

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKED-------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      ++.-++.+|..++..|+|..|+.+|+++++..       +..+.++..+|.+++..|+++.|+.+++++++..|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45666777777777777777777777777642       23456667777777777777777777777777777766665


Q ss_pred             HHHH
Q 006562          453 KRRG  456 (640)
Q Consensus       453 ~~la  456 (640)
                      ..++
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            5554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.34  E-value=4.5e-06  Score=65.85  Aligned_cols=73  Identities=14%  Similarity=-0.056  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHH
Q 006562          554 WGHLTQFYQDLANSEKALECLQQVLYID-------KRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA  626 (640)
Q Consensus       554 ~~~la~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la  626 (640)
                      .+.+|..++..|+|..|+..|+.+++..       +..+.++..+|.++.++|+++.|+.++++++++.|++..++.+++
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            3444444444444444444444444431       122344555555555555555555555555555555554444443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.21  E-value=1.1e-05  Score=81.53  Aligned_cols=87  Identities=8%  Similarity=-0.080  Sum_probs=43.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--------CcccHHHHHH
Q 006562          493 NFKFKDFNAAVEDLSACVKLD-----KEN---KSAYTYLGLALSSIGEYKKAEEAHLKAIQL--------DRNFLEAWGH  556 (640)
Q Consensus       493 ~~~~~~~~~A~~~~~~al~~~-----~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~  556 (640)
                      +..+|++++|+..++++++..     |++   ...+.++|.+|..+|+|++|+.++++++..        .|.....+++
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            344556666666666665431     222   234445555555555555555555555543        1222344445


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHH
Q 006562          557 LTQFYQDLANSEKALECLQQVLY  579 (640)
Q Consensus       557 la~~~~~~g~~~~A~~~~~~al~  579 (640)
                      +|.+|..+|++++|+.+++++++
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Confidence            55555555555555555555543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.20  E-value=8.7e-06  Score=82.08  Aligned_cols=51  Identities=14%  Similarity=0.107  Sum_probs=25.1

Q ss_pred             HcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEF-----EPNSA---DILHERGIVNFKFKDFNAAVEDLSACVK  511 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (640)
                      ..|+|++|+..+++++.+     .|+++   .++.++|.+|..+|+|++|+.++++++.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~  368 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK  368 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            345555666555555543     23332   2344455555555555555555555443

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.13  E-value=0.00033  Score=72.43  Aligned_cols=162  Identities=10%  Similarity=0.039  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHhC-CCCHHHH
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSN-PSAGEAWKRRGQARAALG---------ESVEAIQDLSKALEFE-PNSADIL  486 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~---------~~~~A~~~~~~al~~~-p~~~~~~  486 (640)
                      +..+-..+.+.|+.++|+..|++..+.. +.+...|..+-.++...+         ..+.|...|++..... +-+...+
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3444456667777777777777776543 123444544444444332         2566666666665542 1245566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-cccHHHHHHHHHHHHHh
Q 006562          487 HERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD-RNFLEAWGHLTQFYQDL  564 (640)
Q Consensus       487 ~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~  564 (640)
                      ..+...+.+.|++++|...+++..... .-+...|..+-..|.+.|+.++|...|++..... .-+...|..+...+.+.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            666666677777777777776665542 2245556666666666677777766666665442 11355566666666666


Q ss_pred             cCHHHHHHHHHHHHH
Q 006562          565 ANSEKALECLQQVLY  579 (640)
Q Consensus       565 g~~~~A~~~~~~al~  579 (640)
                      |+.++|..++++.-+
T Consensus       189 g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          189 KNADKVYKTLQRLRD  203 (501)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            666666666666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=98.10  E-value=0.00045  Score=71.36  Aligned_cols=163  Identities=10%  Similarity=-0.000  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhC-CCcHHHH
Q 006562          384 RLSRGIAQVNEGKYASAISIFDQILKED-PMYPEALIGRGTARAFQ---------RELEAAISDFTEAIQSN-PSAGEAW  452 (640)
Q Consensus       384 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~-p~~~~~~  452 (640)
                      +...-..+.+.|++++|+.+|+++.+.. +-+...|..+-.++...         +..+.|...|++..... +.+...|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            3344567788999999999999998753 22466666666666543         34788999999987754 2367788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc
Q 006562          453 KRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYLGLALSSI  530 (640)
Q Consensus       453 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~  530 (640)
                      ..+...|...|++++|..+|++..... .-+...|..+...|.+.|+.++|.+.+++..+.. .-+...|..+...+.+.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            889999999999999999999988763 2367788999999999999999999999998764 23577888999999999


Q ss_pred             CCHHHHHHHHHHHHcc
Q 006562          531 GEYKKAEEAHLKAIQL  546 (640)
Q Consensus       531 g~~~~A~~~~~~a~~~  546 (640)
                      |+.++|..++++..+.
T Consensus       189 g~~d~A~~ll~~Mr~~  204 (501)
T 4g26_A          189 KNADKVYKTLQRLRDL  204 (501)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=98.00  E-value=0.00017  Score=58.59  Aligned_cols=107  Identities=16%  Similarity=0.070  Sum_probs=61.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHccCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 006562          513 DKENKSAYTYLGLALSSIGEY------KKAEEAHLKAIQLDRN--------FLEAWGHLTQFYQDLANSEKALECLQQVL  578 (640)
Q Consensus       513 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al  578 (640)
                      .|++++.|..........|+.      +.-+..|++++..-|.        ....|...|.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            344455555444444444544      4444555555544332        13344445533 34466777777777776


Q ss_pred             HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       579 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      ......+.+|...|....++|+...|.+.+.+++...|...+
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            666666666777777777777777777777777776666443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.97  E-value=0.00016  Score=57.49  Aligned_cols=89  Identities=12%  Similarity=-0.030  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHccC-c-ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 006562          501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK---AEEAHLKAIQLD-R-NFLEAWGHLTQFYQDLANSEKALECLQ  575 (640)
Q Consensus       501 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~~~~  575 (640)
                      .+...|.+....++.+..+.+.+|+++....+...   ++..++..+... | ...+.++.+|..+++.|+|++|..+++
T Consensus        19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~   98 (126)
T 1nzn_A           19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   98 (126)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            34444444444444455555555555555444433   555555555544 3 234455555555555555555555555


Q ss_pred             HHHHhCCCChHHHH
Q 006562          576 QVLYIDKRFSKAYH  589 (640)
Q Consensus       576 ~al~~~~~~~~~~~  589 (640)
                      .+++..|++..+..
T Consensus        99 ~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           99 GLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHCTTCHHHHH
T ss_pred             HHHHhCCCCHHHHH
Confidence            55555555544443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.84  E-value=0.00023  Score=56.68  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQSN-P-SAGEAWKRRGQARAALGESVEAIQDLSKA  475 (640)
Q Consensus       401 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~~~~~~A~~~~~~a  475 (640)
                      ...|.+....++....+.+.+|.++....+...   ++.+++..+... | ..-+.++.+|..+++.|+|++|..+++.+
T Consensus        21 ~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~l  100 (126)
T 1nzn_A           21 EKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGL  100 (126)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            333333333344444444444444444433333   444444444433 2 23344444444444444444444444444


Q ss_pred             HHhCCCCHHH
Q 006562          476 LEFEPNSADI  485 (640)
Q Consensus       476 l~~~p~~~~~  485 (640)
                      ++..|.+..+
T Consensus       101 L~~eP~n~QA  110 (126)
T 1nzn_A          101 LQTEPQNNQA  110 (126)
T ss_dssp             HHHCTTCHHH
T ss_pred             HHhCCCCHHH
Confidence            4444444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.83  E-value=0.00058  Score=55.47  Aligned_cols=107  Identities=14%  Similarity=-0.020  Sum_probs=65.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHhCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          479 EPNSADILHERGIVNFKFKDF------NAAVEDLSACVKLDKEN--------KSAYTYLGLALSSIGEYKKAEEAHLKAI  544 (640)
Q Consensus       479 ~p~~~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~a~  544 (640)
                      .|++++.|..........|+.      ++-+..|++++..-|..        ...|...|.. ...++.++|...|+.++
T Consensus         9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A            9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            455555555555555555555      55555555555544332        2334444433 34467777777777776


Q ss_pred             ccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Q 006562          545 QLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK  586 (640)
Q Consensus       545 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  586 (640)
                      ......+.+|...|....++|+...|...+.+++...|...+
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            666666777777777777777777777777777777765433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.62  E-value=0.00043  Score=57.65  Aligned_cols=88  Identities=11%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHccc-Cchh---------HHHhHHHHHHhhhcHHHHHHHHHHHHHcC---CC-------
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQS-YEIQ---------DICNRAFCYSQLELHKHVIRDCDKALQLD---PT-------  101 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~---------~~~~~A~~~~~~g~~~~Ai~~~~~al~~~---P~-------  101 (640)
                      ....++..|.|+.|+-..+.++... .++.         .++..|.+++..|+|..|...|++||+..   |+       
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            4557799999999999999988775 2222         36789999999999999999999987653   11       


Q ss_pred             ---------------chHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006562          102 ---------------LLQAYILKGCAFSALGRKEEALSVWEKG  129 (640)
Q Consensus       102 ---------------~~~a~~~~g~~y~~~g~~~~A~~~~~~a  129 (640)
                                     ..+..|+++.+|.+++++.+|+..++..
T Consensus       106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                           1368899999999999999999887765

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.42  E-value=0.001  Score=55.45  Aligned_cols=133  Identities=12%  Similarity=0.079  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCcH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKED---PMY------PEALIGRGTARAFQRELEAAISDFTEAIQSN---PSAG  449 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---~~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~  449 (640)
                      ..++.....++..|.|+.|+-....++...   |+.      ..++..+|..++..|+|..|...|+++++..   +...
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~  100 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS  100 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            345667788889999999999988876653   331      3478899999999999999999999997643   2222


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      .....++.    ...+.       .... .+.+.++.+.++.|+...+++.+|+..++..-.. ...+.+...+|..|
T Consensus       101 s~~~~~~~----~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          101 KVRPSTGN----SASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINMLLANLY  165 (167)
T ss_dssp             ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHHHHHHC
T ss_pred             Cccccccc----cCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHHHHHHh
Confidence            11111110    00000       0011 1234567778888888888888888877653222 24566666666654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.23  E-value=0.0046  Score=49.29  Aligned_cols=83  Identities=11%  Similarity=0.047  Sum_probs=67.0

Q ss_pred             cCcccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (640)
                      ....++...+..|+++....+.   ..++.+++.+++.+|. .-+.++.+|..+++.|+|+.|..+.+.+++..|++..+
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            3455678888889888887644   5789999999988884 47889999999999999999999999999999998776


Q ss_pred             HHHHHHH
Q 006562          452 WKRRGQA  458 (640)
Q Consensus       452 ~~~la~~  458 (640)
                      ......+
T Consensus       115 ~~Lk~~I  121 (134)
T 3o48_A          115 GALKSMV  121 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6554433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.06  E-value=0.018  Score=46.58  Aligned_cols=80  Identities=8%  Similarity=-0.027  Sum_probs=53.5

Q ss_pred             ccHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHH
Q 006562          549 NFLEAWGHLTQFYQDLANS---EKALECLQQVLYIDKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL  624 (640)
Q Consensus       549 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  624 (640)
                      -++.+.+++|+++....+.   .+++.+++..+...|. .-+.++.+|..++++|+|.+|+.+.+..++..|+|..+...
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L  116 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  116 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            3466677777777665443   4567777777776663 45567777777777777777777777777777777665554


Q ss_pred             HHHH
Q 006562          625 RASC  628 (640)
Q Consensus       625 la~~  628 (640)
                      ...+
T Consensus       117 k~~I  120 (144)
T 1y8m_A          117 KSMV  120 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.03  E-value=0.013  Score=46.78  Aligned_cols=75  Identities=8%  Similarity=-0.017  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHH
Q 006562          551 LEAWGHLTQFYQDLANS---EKALECLQQVLYIDKR-FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLR  625 (640)
Q Consensus       551 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  625 (640)
                      +.+.+++|+++....+.   .+++.+++..+...|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|+|..+....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk  118 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK  118 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence            45555555555554332   3455566555555552 345556666666666666666666666666666665554433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.97  E-value=0.035  Score=44.91  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=35.0

Q ss_pred             cccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH
Q 006562          378 SISVDFRLSRGIAQVNEGKY---ASAISIFDQILKEDPM-YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA  451 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  451 (640)
                      ..+++..|..|+++....+.   .+++.+++..+...|. .-+.++.+|..+++.|+|.+|..+.+.+++..|++..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            34444455555555444322   2444455555544442 23444455555555555555555555555555544433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.65  E-value=0.19  Score=41.53  Aligned_cols=182  Identities=15%  Similarity=0.052  Sum_probs=116.0

Q ss_pred             ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006562          428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLS  507 (640)
Q Consensus       428 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  507 (640)
                      -.+|+.++-.-.-   +.|..++....++.+++..|.|..++-.+..     -+...+.+.-+.||....++..|+..++
T Consensus        15 Y~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le   86 (242)
T 3kae_A           15 YRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLE   86 (242)
T ss_dssp             TTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567666544333   2344456666788889999999998877643     3446677788999999999999999999


Q ss_pred             HHHHh-----------------CCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHH---------
Q 006562          508 ACVKL-----------------DKENK-SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF---------  560 (640)
Q Consensus       508 ~al~~-----------------~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~---------  560 (640)
                      ..+.-                 +|.+. -.+..+|.++...|+-++|+.++.......|-.+.+-..+-.-         
T Consensus        87 ~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~  166 (242)
T 3kae_A           87 SILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKE  166 (242)
T ss_dssp             HHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC---
T ss_pred             HHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchH
Confidence            99832                 23333 3455679999999999999999999998887654433211000         


Q ss_pred             -HHHhcC-------HHHHH--------HHHHHHHHhCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHhhccCCC
Q 006562          561 -YQDLAN-------SEKAL--------ECLQQVLYIDKRFSK-AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       561 -~~~~g~-------~~~A~--------~~~~~al~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                       -...|+       +....        ...++-.+.-|.... .....+..++.+|-.++....|....+.+|.
T Consensus       167 ~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~  240 (242)
T 3kae_A          167 NVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM  240 (242)
T ss_dssp             --------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence             000010       11111        122222333344332 2334567788899999999999998888885

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.47  E-value=0.74  Score=45.09  Aligned_cols=227  Identities=10%  Similarity=-0.077  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcH----H-
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEAL-----IGRGTARAF-QRELEAAISDFTEAIQSNPSAG----E-  450 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~-----~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~----~-  450 (640)
                      .+.+.+|..|...|++++-.+++......-+.-+.+.     ..+-..+.. .+..+.-++.+..+++...+.-    . 
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~   99 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567889999999999998888876654333322221     122222221 2444555555555554322211    1 


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCcH---
Q 006562          451 -AWKRRGQARAALGESVEAIQDLSKALEFEPN--S----ADILHERGIVNFKFKDFNAAVEDLSACVKLD---KENK---  517 (640)
Q Consensus       451 -~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~---  517 (640)
                       .-..+|..|+..|+|.+|...+.+..+.-..  +    .+++..-..+|...+++.++...+.++....   +.+|   
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence             2337899999999999999999888764322  1    4567777888999999999999999887553   1233   


Q ss_pred             -HHHHHHHHHHH-HcCCHHHHHHHHHHHHccCcc-----cHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHhCCCChH--H
Q 006562          518 -SAYTYLGLALS-SIGEYKKAEEAHLKAIQLDRN-----FLEAWGHLTQFYQDLANSEKALECLQ-QVLYIDKRFSK--A  587 (640)
Q Consensus       518 -~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~-~al~~~~~~~~--~  587 (640)
                       .....-|..+. ..++|..|...|-+++.....     ...+..+++.+-...++..+-..... +..... ..+.  .
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~-~~pei~~  258 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITY-SGRDIDA  258 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccccc-CCccHHH
Confidence             34555688888 899999999999988754322     12344455555555555333222221 111111 2333  3


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 006562          588 YHLRGLLLHGLGQHKKAIKDLSS  610 (640)
Q Consensus       588 ~~~la~~~~~~g~~~~A~~~~~~  610 (640)
                      +..+..+ +..+++.+-...++.
T Consensus       259 l~~L~~a-~~~~dl~~f~~iL~~  280 (394)
T 3txn_A          259 MKSVAEA-SHKRSLADFQAALKE  280 (394)
T ss_dssp             HHHHHHH-HHTTCHHHHHHHHHH
T ss_pred             HHHHHHH-HHhCCHHHHHHHHHH
Confidence            3344443 455677555555544

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=96.33  E-value=0.36  Score=39.91  Aligned_cols=99  Identities=13%  Similarity=0.111  Sum_probs=70.3

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C---------
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS----N---------  445 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~---------  445 (640)
                      ..++..+.++..++-.|.|..|+-++..     -+...+.+..+.||....+|..|+..++..+.-    +         
T Consensus        31 ~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~  105 (242)
T 3kae_A           31 CKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQE  105 (242)
T ss_dssp             ---CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHT
T ss_pred             CChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccce
Confidence            3346667778888889999988876642     345677788889999999999999999988832    2         


Q ss_pred             ----CCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 006562          446 ----PSAGE-AWKRRGQARAALGESVEAIQDLSKALEFEPNS  482 (640)
Q Consensus       446 ----p~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~  482 (640)
                          |.+.+ .+..+|.++.+.|+.++|+.++.......|-.
T Consensus       106 ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf  147 (242)
T 3kae_A          106 MFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF  147 (242)
T ss_dssp             TSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             eeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc
Confidence                22222 44557777777888888888887777776643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.061  Score=57.47  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=65.3

Q ss_pred             cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--h-cCCHHHHHHHHHHHHHh--------CCCc----------HHH
Q 006562          462 LGE-SVEAIQDLSKALEFEPNSADILHERGIVNF--K-FKDFNAAVEDLSACVKL--------DKEN----------KSA  519 (640)
Q Consensus       462 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~-~~~~~~A~~~~~~al~~--------~~~~----------~~~  519 (640)
                      .++ ++.|+..+++....+|.... ++..+.+..  . ..+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            444 57788888888888775532 222222221  1 22345677777766642        1222          123


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 006562          520 YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQ  576 (640)
Q Consensus       520 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  576 (640)
                      +...+..+...|+++-|+.+.++++...|.....|..|+.+|..+|+++.|+-.++.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            333455555666666666666666666666666666666666666666666655443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=96.28  E-value=0.13  Score=50.34  Aligned_cols=187  Identities=10%  Similarity=-0.048  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH----
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA-----WKRRGQARAA-LGESVEAIQDLSKALEFEPNSAD----  484 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~----  484 (640)
                      ..+.+.+|..|...|++++-.+++.......+.-+.+     ...+-..+.. -+..+.-++.+..+++...+.-.    
T Consensus        19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr   98 (394)
T 3txn_A           19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999888888765444333222     2222222222 24455556666666655332211    


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------cc-
Q 006562          485 --ILHERGIVNFKFKDFNAAVEDLSACVKLDKE--N----KSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------RN-  549 (640)
Q Consensus       485 --~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~------~~-  549 (640)
                        .-..+|.+|+..|+|.+|.+.+.+.......  +    .+++.....+|...+++.++...+.++....      |. 
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence              2236788999999999998888888764322  1    3556667888888999999998888886542      11 


Q ss_pred             cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCC--h---HHHHHHHHHHHhcCCH
Q 006562          550 FLEAWGHLTQFYQ-DLANSEKALECLQQVLYIDKRF--S---KAYHLRGLLLHGLGQH  601 (640)
Q Consensus       550 ~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~--~---~~~~~la~~~~~~g~~  601 (640)
                      .+.....-|..+. ..++|..|...|-.++......  +   .+...++.+-.-.++.
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r  236 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQS  236 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCH
Confidence            1334456677788 7899999998888887543322  1   2334444455555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.20  E-value=0.33  Score=53.51  Aligned_cols=100  Identities=14%  Similarity=0.066  Sum_probs=65.6

Q ss_pred             HHHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          389 IAQVNEGKYASAIS-IFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       389 ~~~~~~g~~~~A~~-~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  467 (640)
                      ......+++++|.. ++..    -|+ ......++..+...|.++.|+...+        ++...   .......|++++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~  670 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTL  670 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHH
T ss_pred             hHHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHH
Confidence            34456888888876 4411    110 1222556666777788887776542        22222   234567888888


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          468 AIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       468 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                      |.+..+.     .++...|..+|..+...++++.|..+|.++
T Consensus       671 A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          671 ARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            8877532     356788889999999999999999888875

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.03  Score=59.77  Aligned_cols=115  Identities=11%  Similarity=0.112  Sum_probs=86.7

Q ss_pred             cCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HccCHHHHHHHHHHHHHh--------CCCc----------HHH
Q 006562          394 EGK-YASAISIFDQILKEDPMYPEALIGRGTARA---FQRELEAAISDFTEAIQS--------NPSA----------GEA  451 (640)
Q Consensus       394 ~g~-~~~A~~~~~~~l~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~--------~p~~----------~~~  451 (640)
                      .++ ++.|+.++++....+|.... ++..+.+..   ...+--+|+..+.+.++.        .+.+          ...
T Consensus       261 t~~~~~~a~~~le~L~~~~p~~~~-~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L  339 (754)
T 4gns_B          261 TPSLVDFTIDYLKGLTKKDPIHDI-YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL  339 (754)
T ss_dssp             CGGGHHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence            344 58899999999999987543 333333222   123445677777777642        2222          235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006562          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC  509 (640)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a  509 (640)
                      +...+..+...|+++-|+.+.++++...|..-..|+.|+.+|..+|+|+.|+-.++.+
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            5667888889999999999999999999999999999999999999999999888776

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.77  E-value=0.52  Score=51.89  Aligned_cols=180  Identities=16%  Similarity=0.013  Sum_probs=111.0

Q ss_pred             HHHHccCHHHHHH-HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Q 006562          424 ARAFQRELEAAIS-DFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAA  502 (640)
Q Consensus       424 ~~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A  502 (640)
                      .....+++++|.. .+..    -|+ ......+...+...|.++.|+...+        ++...   .......|+++.|
T Consensus       608 ~~~~~~~~~~a~~~~l~~----i~~-~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A  671 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLPN----VEG-KDSLTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLA  671 (814)
T ss_dssp             HHHHTTCHHHHHHHTGGG----CCC-HHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHhc----CCc-hHHHHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHH
Confidence            3346788888876 4411    110 1222566777888899888886552        33222   3445788999999


Q ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------cccHHHHHHHHHHHHHhcCHHHHHHHH
Q 006562          503 VEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------RNFLEAWGHLTQFYQDLANSEKALECL  574 (640)
Q Consensus       503 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~  574 (640)
                      .+..+.     .+++..|..+|..+...++++.|+.+|.++-...        ..+...+..++......|++..|...|
T Consensus       672 ~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~  746 (814)
T 3mkq_A          672 RDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAY  746 (814)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            988643     4678999999999999999999999999864321        223344445555555556665555554


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHHcCCc
Q 006562          575 QQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN---IECLYLRASCYHAIGEY  635 (640)
Q Consensus       575 ~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~  635 (640)
                      .+.     .+   ......+|...+++++|+..-++   ..|..   +.+....+.-+...|+.
T Consensus       747 ~~~-----g~---~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~  799 (814)
T 3mkq_A          747 WIA-----GD---IQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKN  799 (814)
T ss_dssp             HHH-----TC---HHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHc-----CC---HHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccch
Confidence            332     11   11223445666666666665543   44544   25555566666677754

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.4  Score=40.71  Aligned_cols=107  Identities=8%  Similarity=-0.066  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ++..+.+   .+..|+++.|.++.+..     ++...|..+|......|+++-|..+|.++-.     .   -.+..+|.
T Consensus         8 ~~~rF~L---AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~---~~L~~Ly~   71 (177)
T 3mkq_B            8 PHIRFDL---ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-----F---DKLSFLYL   71 (177)
T ss_dssp             HHHHHHH---HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----H---HHHHHHHH
T ss_pred             hHHHHHH---HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----H---HHHHHHHH
Confidence            4444443   35678888888776654     4577788888888888888888888777522     1   23444555


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSA  508 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~  508 (640)
                      ..|+.+.-....+.+.....     +.....+++..|+++++++.|.+
T Consensus        72 ~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           72 VTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence            56666554444433333221     12223445566677766666654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.38  E-value=1.4  Score=46.26  Aligned_cols=123  Identities=11%  Similarity=-0.010  Sum_probs=80.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          490 GIVNFKFKDFNAAVEDLSACVKLDKENKSA----YTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       490 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      +.......+.+.|...+.......+-+...    +..++.-....+...++...+.+......++ .....++......|
T Consensus       221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~r~Alr~~  299 (618)
T 1qsa_A          221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQST-SLIERRVRMALGTG  299 (618)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCCh-HHHHHHHHHHHHCC
Confidence            333344557788888887765543333222    2223333333443556777777765544433 33444444556779


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      +++.|..++...-......+...+.+|.++...|+.++|..+|+++..
T Consensus       300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999999999876554445677889999999999999999999999876

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.36  E-value=2  Score=43.19  Aligned_cols=185  Identities=12%  Similarity=-0.014  Sum_probs=104.3

Q ss_pred             cCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH---H-HcC
Q 006562          394 EGKYASAISIFDQILKE------DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR---A-ALG  463 (640)
Q Consensus       394 ~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~---~-~~~  463 (640)
                      .|+++.|++.+....+.      .+....+...+..++...|+++...+.+.-..+.......+...+....   . ...
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            47888998877554432      2334677888888889999998887776655444333322222221111   1 111


Q ss_pred             CHHHHHHHHHHHHHhC----CC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCc----HHHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEFE----PN-------SADILHERGIVNFKFKDFNAAVEDLSACVKLD--KEN----KSAYTYLGLA  526 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~----p~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~----~~~~~~la~~  526 (640)
                      ..+.  ......+..-    .+       .......++.++...|++.+|...+.....-.  ..+    ...+.....+
T Consensus       109 ~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl  186 (445)
T 4b4t_P          109 SLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL  186 (445)
T ss_dssp             TTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             chhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            1111  1111111111    10       12344567777777888888877777765321  111    3556666777


Q ss_pred             HHHcCCHHHHHHHHHHHHcc---Cccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Q 006562          527 LSSIGEYKKAEEAHLKAIQL---DRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYI  580 (640)
Q Consensus       527 ~~~~g~~~~A~~~~~~a~~~---~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~  580 (640)
                      +...+++..|...+.++...   .+..    ...+...|.++...++|.+|-.+|..++..
T Consensus       187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            77777777777777765321   1111    334556677777777777777777666543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=95.13  E-value=3.8  Score=42.90  Aligned_cols=259  Identities=10%  Similarity=-0.077  Sum_probs=151.5

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------------------YPEALIGRGTARAFQRELEAAISDF  438 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~~~  438 (640)
                      .|.+.......+......|+-.+|......+......                  .+.-+.......+..|+...|....
T Consensus        98 ~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~  177 (618)
T 1qsa_A           98 KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLA  177 (618)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            4566666666666677777776666666555433221                  1222333344445555555554443


Q ss_pred             HH-------------HHHhCCCcHH-------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHH
Q 006562          439 TE-------------AIQSNPSAGE-------------AWKRRGQARAALGESVEAIQDLSKALEFEPNSAD----ILHE  488 (640)
Q Consensus       439 ~~-------------al~~~p~~~~-------------~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~  488 (640)
                      ..             ++..+|....             .....+.......+.+.|...+.......+-+..    .+..
T Consensus       178 ~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~  257 (618)
T 1qsa_A          178 GQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDI  257 (618)
T ss_dssp             HTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHH
Confidence            32             1222333221             1122344444455778888888777654433322    2223


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHH
Q 006562          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSE  568 (640)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  568 (640)
                      ++.-+...+...++...+.+......++. ....++......|+++.|...|...-..........+.+|+.+...|+.+
T Consensus       258 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~  336 (618)
T 1qsa_A          258 VAWRLMGNDVTDEQAKWRDDAIMRSQSTS-LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREA  336 (618)
T ss_dssp             HHHTSCSTTCCHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCChHHHHHHHhccccCCChH-HHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHH
Confidence            33333444535677777777665444333 34444445567799999999998766544456788899999999999999


Q ss_pred             HHHHHHHHHHHhC--------------------C--C--Ch----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHH
Q 006562          569 KALECLQQVLYID--------------------K--R--FS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE  620 (640)
Q Consensus       569 ~A~~~~~~al~~~--------------------~--~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  620 (640)
                      +|..+|.++....                    +  .  ..    ......+..+...|....|...+.......  +..
T Consensus       337 ~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~--~~~  414 (618)
T 1qsa_A          337 EAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKT  414 (618)
T ss_dssp             HHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcC--CHH
Confidence            9999988875321                    0  0  00    023445667888899999988888777542  244


Q ss_pred             HHHHHHHHHHHcCCcccc
Q 006562          621 CLYLRASCYHAIGEYREA  638 (640)
Q Consensus       621 ~~~~la~~~~~~g~~~~A  638 (640)
                      -...++.+....|.+..+
T Consensus       415 ~~~~la~~a~~~~~~~~~  432 (618)
T 1qsa_A          415 EQAQLARYAFNNQWWDLS  432 (618)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCCChHHH
Confidence            445667766666666544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=94.99  E-value=0.97  Score=38.33  Aligned_cols=109  Identities=9%  Similarity=-0.042  Sum_probs=70.5

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          448 AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       448 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      +++..+.++   ...|+++.|.+..+..     ++...|..+|......|+++-|..+|.++-     +   +-.+..+|
T Consensus         7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~-----D---~~~L~~Ly   70 (177)
T 3mkq_B            7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH-----S---FDKLSFLY   70 (177)
T ss_dssp             CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-----C---HHHHHHHH
T ss_pred             ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC-----C---HHHHHHHH
Confidence            344444443   4678888888877654     567788888888888888888888888752     2   22345556


Q ss_pred             HHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQV  577 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  577 (640)
                      ...|+.+.-....+.+......     .....++...|+++++++.|.+.
T Consensus        71 ~~tg~~e~L~kla~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           71 LVTGDVNKLSKMQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHTCHHHHHHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHHC
Confidence            6677776655555544433221     22334466788888888888654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.99  E-value=0.19  Score=49.80  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHccc-----Cchh--HH----------------HhHHHHHHhhhcHHHHHHHHHHHHHcCCC
Q 006562           45 KLCSLRNWSKAIRILDSLLAQS-----YEIQ--DI----------------CNRAFCYSQLELHKHVIRDCDKALQLDPT  101 (640)
Q Consensus        45 ~~~~~~~y~~Ai~~y~~ai~~~-----~~~~--~~----------------~~~A~~~~~~g~~~~Ai~~~~~al~~~P~  101 (640)
                      .....|+...|+..+.+|+.+.     ++..  .|                ..++.+++..|++.+|+..+..++..+|-
T Consensus       124 ~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~  203 (388)
T 2ff4_A          124 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPY  203 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3456799999999999999885     1110  01                24667788999999999999999999999


Q ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562          102 LLQAYILKGCAFSALGRKEEALSVWEKGY  130 (640)
Q Consensus       102 ~~~a~~~~g~~y~~~g~~~~A~~~~~~al  130 (640)
                      +-.+|..+-.+|...|+..+|+..|+++-
T Consensus       204 ~E~~~~~lm~al~~~Gr~~~Al~~y~~~r  232 (388)
T 2ff4_A          204 REPLWTQLITAYYLSDRQSDALGAYRRVK  232 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999984

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.90  E-value=1.3  Score=40.16  Aligned_cols=118  Identities=19%  Similarity=0.063  Sum_probs=70.5

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      ....|..++|+......++..|.+......+..+++-.|+|+.|...++.+.+++|........+....       .|..
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~   79 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ   79 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence            455677788888888888888888887777888888888888888888888888776543221111100       1111


Q ss_pred             HHHHHHcc--Cc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          539 AHLKAIQL--DR------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       539 ~~~~a~~~--~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      .=.+.+.-  .|      ........-+......|+.++|...-.++++..|.
T Consensus        80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~  132 (273)
T 1zbp_A           80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  132 (273)
T ss_dssp             HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence            11222211  11      11222233444555567888887777777776653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.74  E-value=3.9  Score=41.04  Aligned_cols=239  Identities=11%  Similarity=-0.010  Sum_probs=140.1

Q ss_pred             ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHH-ccCHHHHHHHHHHHHHhC----C
Q 006562          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA---RAF-QRELEAAISDFTEAIQSN----P  446 (640)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~---~~~-~g~~~~A~~~~~~al~~~----p  446 (640)
                      ...+............++..|+++...+.+.-..........+...+...   +.. ....+.  ......+..-    .
T Consensus        50 ~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte  127 (445)
T 4b4t_P           50 SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTE  127 (445)
T ss_dssp             CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSS
T ss_pred             cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhc
Confidence            34455567777888889999999988887765554443333332222221   111 111111  1111222211    1


Q ss_pred             C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 006562          447 S-------AGEAWKRRGQARAALGESVEAIQDLSKALEF-EPN-S----ADILHERGIVNFKFKDFNAAVEDLSACVK--  511 (640)
Q Consensus       447 ~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~-~----~~~~~~la~~~~~~~~~~~A~~~~~~al~--  511 (640)
                      +       .......++.++...|++.+|...+.....- ... +    .+.+.....++...+++..|...++++..  
T Consensus       128 ~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~  207 (445)
T 4b4t_P          128 NKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT  207 (445)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            1       2345678999999999999999999887642 211 1    45778889999999999999999998743  


Q ss_pred             -hCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----cccHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHh
Q 006562          512 -LDKENK----SAYTYLGLALSSIGEYKKAEEAHLKAIQLD-----RNFLEAWGHLTQFYQDLANS-EKALECLQQVLYI  580 (640)
Q Consensus       512 -~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~  580 (640)
                       ..+..+    ..+...|.++...++|.+|-.+|..++...     |.........+.++.-+..+ ..--....+.. .
T Consensus       208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~-~  286 (445)
T 4b4t_P          208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ-N  286 (445)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH-H
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh-h
Confidence             233333    456778999999999999999999987642     22112222222222222111 11111111111 1


Q ss_pred             CC--CChHHHHHHHHHHHh--cCCHHHHHHHHHHhhccCC
Q 006562          581 DK--RFSKAYHLRGLLLHG--LGQHKKAIKDLSSGLGIDP  616 (640)
Q Consensus       581 ~~--~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p  616 (640)
                      ++  .....+..+..+|..  ..+++.....|...+..+|
T Consensus       287 ~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~  326 (445)
T 4b4t_P          287 DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDD  326 (445)
T ss_dssp             HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred             cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence            12  123455666666654  4578888888877665544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.41  E-value=0.61  Score=46.05  Aligned_cols=114  Identities=12%  Similarity=0.066  Sum_probs=75.8

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHH-HHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAA-ISDFTEAIQSNPSAGEAWKRRGQARAALG  463 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~~  463 (640)
                      ...|......|+...|...+.+++.+....+-.-  ..     ...+-.+ ...+++.      ...+...++..+...|
T Consensus       119 ~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~--~~-----~~~w~~~~r~~l~~~------~~~a~~~~~~~~l~~g  185 (388)
T 2ff4_A          119 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--LR-----DFQFVEPFATALVED------KVLAHTAKAEAEIACG  185 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--GT-----TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCC--CC-----chhHHHHHHHHHHHH------HHHHHHHHHHHHHHCC
Confidence            3344555567899999999999998754321100  00     0111111 1111111      1123445677788889


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006562          464 ESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK  511 (640)
Q Consensus       464 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  511 (640)
                      ++.+++..+..++..+|-+..++..+..++...|+..+|+..|+++..
T Consensus       186 ~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          186 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999998888888888889999999999888887754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.01  E-value=1.4  Score=40.03  Aligned_cols=59  Identities=15%  Similarity=0.197  Sum_probs=40.9

Q ss_pred             HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Q 006562          390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA  448 (640)
Q Consensus       390 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  448 (640)
                      .++..|+.++|+......++.+|.+......+...+.-.|+++.|...++-+.+++|..
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~   64 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY   64 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence            34556677777777777777777777777777777777777777777777777776654

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.41  E-value=1.8  Score=43.72  Aligned_cols=131  Identities=11%  Similarity=0.016  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHccCHHHHHH----------HHHHH
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILK-----------EDPMYPEALIGRGTARAFQRELEAAIS----------DFTEA  441 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~-----------~~~~~~~~~~~la~~~~~~g~~~~A~~----------~~~~a  441 (640)
                      .++..-..++..+++++|.++...++.           +++-.+.+|+..+.++...|+......          .+-.+
T Consensus       138 ~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~  217 (523)
T 4b4t_S          138 MHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF  217 (523)
T ss_dssp             -----------------------------------------------------------------CHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Confidence            334444455667777777776655441           122234556666666666665443211          11122


Q ss_pred             HHh-----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006562          442 IQS-----NPS-AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSA  508 (640)
Q Consensus       442 l~~-----~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~  508 (640)
                      ++.     ++. .+..+..+-+.|...+.+++|.....++.  .|..       ...++.+|.++.-.++|.+|.+++..
T Consensus       218 ~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~  295 (523)
T 4b4t_S          218 LKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA  295 (523)
T ss_dssp             HHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            211     111 13345555566666666666666666553  3321       22344455555555666666666655


Q ss_pred             HHHhCCC
Q 006562          509 CVKLDKE  515 (640)
Q Consensus       509 al~~~~~  515 (640)
                      |+...|.
T Consensus       296 A~rkap~  302 (523)
T 4b4t_S          296 AIRKAPH  302 (523)
T ss_dssp             HTSSCSC
T ss_pred             HHHhCCc
Confidence            5555443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.38  E-value=0.42  Score=48.58  Aligned_cols=79  Identities=18%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Q 006562          485 ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD  563 (640)
Q Consensus       485 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  563 (640)
                      .+..+|.+......+..|..+|.+|..+.|++...+..+|.+....|+.-+|+-+|.+++......+.+..++..++..
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            5667888888888999999999999999999999999999999999999999999999998877788888888877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.35  E-value=2.5  Score=48.41  Aligned_cols=142  Identities=13%  Similarity=-0.021  Sum_probs=94.1

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSN--------------------  445 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------------------  445 (640)
                      .+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|.++-..-                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34445666777766544    445677888888999999999999999999998863110                    


Q ss_pred             ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562          446 ---PSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-A----DILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (640)
Q Consensus       446 ---p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (640)
                         ...+..|..+..++...+.++.+++..+.|++..+.+ .    ..|..+-..+...|+|++|...+...-.. ....
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~  971 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK  971 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence               0113456667778888888999998888888876433 2    25666777788889999888777544222 1223


Q ss_pred             HHHHHHHHHHHHcCC
Q 006562          518 SAYTYLGLALSSIGE  532 (640)
Q Consensus       518 ~~~~~la~~~~~~g~  532 (640)
                      ..+..+.......|.
T Consensus       972 ~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            344444444444443

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.26  E-value=0.64  Score=47.24  Aligned_cols=80  Identities=14%  Similarity=0.020  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562          518 SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (640)
Q Consensus       518 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (640)
                      ..+..+|.+......+..|..+|.+|....|.+...++.+|.+....|+.-+|+-+|-+++......+.+..++..++..
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999998877788888888877654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.11  E-value=0.62  Score=46.72  Aligned_cols=62  Identities=11%  Similarity=0.027  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006562          416 EALIGRGTARAFQRELEAAISDFTEAIQSNPS---AGEAWKRRGQARAALGESVEAIQDLSKALE  477 (640)
Q Consensus       416 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~  477 (640)
                      .++..+|..|...|++++|.+.|.++......   -.+.+....+++...++|..+...+.++..
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34555556666666666666665555543221   234444555555555555555555555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=92.04  E-value=2  Score=47.16  Aligned_cols=99  Identities=9%  Similarity=-0.125  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Q 006562          449 GEAWKRRGQARAALGESVEAIQDLSKALEF----EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD-KENKSAYTYL  523 (640)
Q Consensus       449 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l  523 (640)
                      ...+..+-..|.+.|+.++|...|....+.    ..-+...|..+...|.+.|+.++|.+.|++..+.. .-+...|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            346777888999999999999999775432    23367889999999999999999999999988764 3356777778


Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHccC
Q 006562          524 GLALSSIGE-YKKAEEAHLKAIQLD  547 (640)
Q Consensus       524 a~~~~~~g~-~~~A~~~~~~a~~~~  547 (640)
                      -.++.+.|+ .++|..+|+++....
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            788888887 478889999887753

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.88  E-value=0.68  Score=46.43  Aligned_cols=101  Identities=11%  Similarity=-0.045  Sum_probs=74.0

Q ss_pred             ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcH----
Q 006562          379 ISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM---YPEALIGRGTARAFQRELEAAISDFTEAIQSNP--SAG----  449 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----  449 (640)
                      .-...+..+|..++..|++++|.+.|.++......   -.+.++....++...+++..+..++.++.....  .++    
T Consensus       129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~  208 (429)
T 4b4t_R          129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN  208 (429)
T ss_dssp             CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence            34557889999999999999999999998875332   367888889999999999999999999865422  122    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFE  479 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~  479 (640)
                      ......|.++...++|..|...|-.++...
T Consensus       209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          209 RYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             HHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            223334555566677777776666655543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=91.66  E-value=2.4  Score=46.61  Aligned_cols=99  Identities=8%  Similarity=-0.133  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 006562          415 PEALIGRGTARAFQRELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHER  489 (640)
Q Consensus       415 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  489 (640)
                      ...+..+-..|.+.|+.++|...|.+..+.    ..-+...|..+-..|.+.|+.++|.+.|++..... .-+...|..+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            456788889999999999999999775432    23467789999999999999999999999998764 2367788888


Q ss_pred             HHHHHhcCC-HHHHHHHHHHHHHhC
Q 006562          490 GIVNFKFKD-FNAAVEDLSACVKLD  513 (640)
Q Consensus       490 a~~~~~~~~-~~~A~~~~~~al~~~  513 (640)
                      ..++.+.|+ .++|.+++++.....
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            889999998 478999999998875

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.51  E-value=0.67  Score=46.71  Aligned_cols=126  Identities=10%  Similarity=-0.054  Sum_probs=43.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHH---h--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------------
Q 006562          458 ARAALGESVEAIQDLSKALE---F--------EPNSADILHERGIVNFKFKDFNAAVEDLSACVKL--------------  512 (640)
Q Consensus       458 ~~~~~~~~~~A~~~~~~al~---~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------------  512 (640)
                      .++..+++++|..+-...+.   +        ++-...+|+.++.++...|+.............+              
T Consensus       145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr  224 (523)
T 4b4t_S          145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK  224 (523)
T ss_dssp             ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred             HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence            34556677777766654441   1        1222345555566666666555544333333221              


Q ss_pred             -CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          513 -DKE-NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-----NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       513 -~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                       ++. ....+..+-+.|...+.++.|..+..++.-...     .....++++|+++..+++|.+|.+++..|+...|.
T Consensus       225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~  302 (523)
T 4b4t_S          225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH  302 (523)
T ss_dssp             SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred             cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence             111 134555566666667777777777766642111     11344556677777777777777777777666553

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=90.76  E-value=5.1  Score=45.83  Aligned_cols=142  Identities=17%  Similarity=0.015  Sum_probs=81.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------------------
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD--------------------  547 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------------  547 (640)
                      .+...+...+.++-+..    .+...|.++...+.+|.++...|++++|..+|+++-...                    
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            34445555666655433    334556666666777777777777777777777653210                    


Q ss_pred             ---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-h----HHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562          548 ---RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF-S----KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       548 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (640)
                         ...+..|..+..++.+.|-++.+++..+.+++..+.+ .    ..|..+=..+...|+|++|...+...-.. ....
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r~  971 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLKK  971 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSCH
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHHH
Confidence               0113455666677777777777777777777665432 2    14555566677777877777666443211 1223


Q ss_pred             HHHHHHHHHHHHcCC
Q 006562          620 ECLYLRASCYHAIGE  634 (640)
Q Consensus       620 ~~~~~la~~~~~~g~  634 (640)
                      +.+..+.....+.|.
T Consensus       972 ~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          972 SCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhCCC
Confidence            444444444444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.07  E-value=3.8  Score=44.82  Aligned_cols=226  Identities=11%  Similarity=0.026  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcH-
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDP---M---YP----EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG-  449 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-  449 (640)
                      ..+++.+|.++...  ..+++.++...+..+.   .   ..    .+...+|.++.-.++ +++.+.+...+..+.... 
T Consensus       413 ~GAllaLGli~ag~--~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~  489 (963)
T 4ady_A          413 GGSLYGLGLIYAGF--GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSG  489 (963)
T ss_dssp             HHHHHHHHHHTTTT--THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHHHHHHhcCCC--cHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHH
Confidence            34556666655444  4578888888776443   0   11    355677777776665 456677777776443211 


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH----HHHHHH
Q 006562          450 -EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS----AYTYLG  524 (640)
Q Consensus       450 -~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~la  524 (640)
                       .+-..+|.++...|+-+-....+..+.+...+...-...+|..+...|+.+.+...++.....  .++.    +.+.+|
T Consensus       490 ~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alg  567 (963)
T 4ady_A          490 EAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIA  567 (963)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence             244557777778888776666666666543322222334445555677777666666654443  2333    334567


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--cCC-H
Q 006562          525 LALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--LGQ-H  601 (640)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--~g~-~  601 (640)
                      ..|...|+...-...+..+.....++..-...+|......|+.+.+...+.....  ..++.+.+..+.++-.  .|+ .
T Consensus       568 lAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~  645 (963)
T 4ady_A          568 LAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGL  645 (963)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCc
Confidence            7778889965544566666654333333223333333445655444444433222  2345554444433332  222 2


Q ss_pred             HHHHHHHHHhhc
Q 006562          602 KKAIKDLSSGLG  613 (640)
Q Consensus       602 ~~A~~~~~~al~  613 (640)
                      .+++..+.+...
T Consensus       646 ~~aid~L~~L~~  657 (963)
T 4ady_A          646 QSAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcc
Confidence            677777777653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.57  E-value=6  Score=43.30  Aligned_cols=238  Identities=14%  Similarity=0.064  Sum_probs=135.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C---cH----
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKED-PMY----PEALIGRGTARAFQRELEAAISDFTEAIQSNP---S---AG----  449 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~-~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~----  449 (640)
                      ..+|.+  ..|+.++++..+.+.+... .++    .-+++.+|.++...+  .+++.++...+....   .   ..    
T Consensus       380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~  455 (963)
T 4ady_A          380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH  455 (963)
T ss_dssp             HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred             HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence            344443  4678888888887766522 222    346677777776555  468888888776543   0   11    


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNS--ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       450 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      .+-..+|.++...++ +++.+.+...+..+...  ..+-..+|.++...|+-+.....+..+.+...+...-...+|..+
T Consensus       456 gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGl  534 (963)
T 4ady_A          456 GASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLAL  534 (963)
T ss_dssp             HHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHh
Confidence            244466776665555 45667777776643321  134556788888888877766666666654433333334455555


Q ss_pred             HHcCCHHHHHHHHHHHHccCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHH
Q 006562          528 SSIGEYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAI  605 (640)
Q Consensus       528 ~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~  605 (640)
                      ...|+.+.+....+.........  ..+-..+|..|...|+...-...+..+.....++..-...+|..+...|+.+.+.
T Consensus       535 l~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          535 INYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             HTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             hhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHH
Confidence            66788777666666554432111  2233456777888898755555777776543333333333444444566655555


Q ss_pred             HHHHHhhccCCCCHHHHHHHHHHH
Q 006562          606 KDLSSGLGIDPSNIECLYLRASCY  629 (640)
Q Consensus       606 ~~~~~al~~~p~~~~~~~~la~~~  629 (640)
                      ..+....+  -.++.+.+..+.++
T Consensus       615 rlv~~L~~--~~d~~VR~gAalAL  636 (963)
T 4ady_A          615 RIVQLLSK--SHNAHVRCGTAFAL  636 (963)
T ss_dssp             HHTTTGGG--CSCHHHHHHHHHHH
T ss_pred             HHHHHHHh--cCCHHHHHHHHHHH
Confidence            55443333  22455555544443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=85.86  E-value=6.4  Score=31.44  Aligned_cols=79  Identities=9%  Similarity=0.012  Sum_probs=57.1

Q ss_pred             hcCCHHHHHHHHHHHHcccCchhHHHhHHHHHH-hhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 006562           48 SLRNWSKAIRILDSLLAQSYEIQDICNRAFCYS-QLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVW  126 (640)
Q Consensus        48 ~~~~y~~Ai~~y~~ai~~~~~~~~~~~~A~~~~-~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A~~~~  126 (640)
                      .-|+.++-+.||-+.-..+    .|..+|.-++ ..|+-++=-..+...+.-.|-+++..+.+|.+|.++|+..+|-..+
T Consensus        73 ~C~NlKrVi~C~~~~n~~s----e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           73 KCQNLKSVVECGVINNTLN----EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             GCSCTHHHHHHHHHTTCCC----HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHhcchH----HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            4588889999987653322    2677777544 4555555444445546667778999999999999999999999999


Q ss_pred             HHHH
Q 006562          127 EKGY  130 (640)
Q Consensus       127 ~~al  130 (640)
                      .+|=
T Consensus       149 ~~AC  152 (172)
T 1wy6_A          149 IEAC  152 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	640
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-33
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-30
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-29
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-27
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-27
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-17
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	3e-19
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-15
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-12
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-08
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.004
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-18
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	1e-07
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	6e-18
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	4e-09
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	0.002
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-16
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-14
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	2e-13
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	1e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	0.001
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-15
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	1e-14
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	2e-13
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	4e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	3e-14
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	2e-11
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	7e-04
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	4e-13
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	7e-13
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	2e-08
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	3e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-11
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	7e-11
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-09
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	1e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	6e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	7e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	8e-09
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	4e-06
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	2e-05
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	6e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	9e-09
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	9e-07
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-08
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	3e-05
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	7e-04
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	2e-07
d2ff4a2	179	a.118.8.3 (A:105-283) Probable regulatory protein	0.003
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-07
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-06
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	6e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	5e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	5e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-05
d1tjca_	95	a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni	6e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	7e-06
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-04
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	1e-05
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	0.002
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (323), Expect = 4e-33
 Identities = 43/233 (18%), Positives = 93/233 (39%)

Query: 401 ISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA 460
            + + + ++  P +  A    G     Q E+  AI  F +A+  +P+  +A+   G    
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAY 520
                  A+    +AL   PN A +      V ++    + A++     ++L      AY
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 521 TYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYI 580
             L  AL   G   +AE+ +  A++L     ++  +L    ++  N E+A+   ++ L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 581 DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
              F+ A+     +L   G+ ++A+      + I P+  +      +    + 
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 2e-30
 Identities = 42/250 (16%), Positives = 87/250 (34%)

Query: 350 FKWDMLKETSNEAKRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
                    +       K C  +  +++        + G     +G+   AI  F++ + 
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            DP + +A I  G      R  + A++ +  A+  +P+               G    AI
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
               +A+E +P+  D          +      A +  +  ++L   +  +   L      
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
            G  ++A   + KA+++   F  A  +L    Q     ++AL   ++ + I   F+ AY 
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377

Query: 590 LRGLLLHGLG 599
             G  L  + 
Sbjct: 378 NMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 3e-29
 Identities = 43/205 (20%), Positives = 83/205 (40%)

Query: 435 ISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF 494
            + + +AI++ P+   AW   G    A GE   AI    KA+  +PN  D     G V  
Sbjct: 155 KACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           + + F+ AV      + L   +   +  L       G    A + + +AI+L  +F +A+
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 274

Query: 555 GHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI 614
            +L    ++  +  +A +C    L +    + + +    +    G  ++A++     L +
Sbjct: 275 CNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334

Query: 615 DPSNIECLYLRASCYHAIGEYREAV 639
            P         AS     G+ +EA+
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEAL 359

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 1e-27
 Identities = 49/289 (16%), Positives = 96/289 (33%), Gaps = 34/289 (11%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
           +     +   G + +A     Q+ +++P     L+   +     R L+ +    T AI+ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 445 NPSAGEAWKRRGQA----------------------------------RAALGESVEAIQ 470
           NP   EA+   G                                      A G+   A+Q
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 471 DLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI 530
               AL++ P+   +  + G +         A       ++       A++ LG   ++ 
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           GE   A     KA+ LD NFL+A+ +L    ++    ++A+    + L +    +  +  
Sbjct: 183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN 242

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
              + +  G    AI      + + P   +     A+     G   EA 
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (275), Expect = 9e-27
 Identities = 34/186 (18%), Positives = 75/186 (40%)

Query: 381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTE 440
           +D  ++ G        +  A++ + + L   P +             Q  ++ AI  +  
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFN 500
           AI+  P   +A+     A    G   EA    + AL   P  AD L+    +  +  +  
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322

Query: 501 AAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQF 560
            AV      +++  E  +A++ L   L   G+ ++A   + +AI++   F +A+ ++   
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382

Query: 561 YQDLAN 566
            +++ +
Sbjct: 383 LKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.0 bits (201), Expect = 2e-17
 Identities = 40/256 (15%), Positives = 78/256 (30%), Gaps = 34/256 (13%)

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
            +          + EAA     +  +  P                     +    + A++
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 478 FEPNSADILHERGIV----------------------------------NFKFKDFNAAV 503
             P  A+     G V                                       D   AV
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD 563
           +   + ++ + +     + LG  L ++G  ++A+  +LKAI+   NF  AW +L   +  
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
                 A+   ++ + +D  F  AY   G +L       +A+      L + P++     
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241

Query: 624 LRASCYHAIGEYREAV 639
             A  Y+  G    A+
Sbjct: 242 NLACVYYEQGLIDLAI 257

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 1e-13
 Identities = 23/119 (19%), Positives = 44/119 (36%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFT 439
             D   +   A   +G  A A   ++  L+  P + ++L      +  Q  +E A+  + 
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKD 498
           +A++  P    A           G+  EA+    +A+   P  AD     G    + +D
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.8 bits (164), Expect = 1e-12
 Identities = 43/397 (10%), Positives = 108/397 (27%), Gaps = 20/397 (5%)

Query: 74  NRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHA 133
             A    Q    +   R C +  + +P      +L         R + +        +  
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-- 61

Query: 134 LHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHN 193
                  + +  L  +     Q +     Y  +  +    +      A   ++       
Sbjct: 62  -QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120

Query: 194 KSDICDSSSQSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSEN 253
                 +   + D+    S   +         +          ++    +         N
Sbjct: 121 VQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFN 180

Query: 254 HNGSSDGSKSTHASRDASEINRQSSD------DFDICNGPIDKA-SVNERHGRQTNGTHD 306
             G      + H    A  ++    D      +        D+A +   R    +     
Sbjct: 181 AQGEIW--LAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

Query: 307 VHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEAKRNK 366
           VH  L+         +   ++Y ++        D+  + +    +   + E  +      
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298

Query: 367 KFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARA 426
           + C            D   +    +  +G    A+ ++ + L+  P +  A     +   
Sbjct: 299 RLC--------PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350

Query: 427 FQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG 463
            Q +L+ A+  + EAI+ +P+  +A+   G     + 
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 5e-06
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 1/88 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L   R + +A+      L+ S     +  N A  Y +  L    I    +A++L P    
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYEH 132
           AY     A    G   EA   +      
Sbjct: 273 AYCNLANALKEKGSVAEAEDCYNTALRL 300

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDICN-RAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
           L    + ++A    ++ L       D  N  A    +    +  +R   KAL++ P    
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

Query: 105 AYILKGCAFSALGRKEEALSVWEKGYE 131
           A+          G+ +EAL  +++   
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 46  LCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ 104
                N  +A+R+    L    E      N A    Q    +  +    +A+++ PT   
Sbjct: 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

Query: 105 AYILKGCAFSALG 117
           AY   G     + 
Sbjct: 375 AYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 73  CNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYE 131
            N    ++        I   +KA+ LDP  L AYI  G         + A++ + +   
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 6e-04
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 41  IELAKLC-SLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQL 98
           +ELA       ++  A R    L  Q  +   +    +  + Q             A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 99  DPTLLQAYILKGCAF 113
           +P L +AY   G  +
Sbjct: 63  NPLLAEAYSNLGNVY 77

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 3e-19
 Identities = 20/225 (8%), Positives = 58/225 (25%), Gaps = 6/225 (2%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQA- 458
           +     Q         ++ +G       ++ L+     + + + ++       K      
Sbjct: 5   SAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW 61

Query: 459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS 518
             A    +  +Q  +K       S    +    +      +   +++L     +D   + 
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 519 AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVL 578
             + LG+  +         +    +            HL    +    + +A    +   
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 579 YIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY 623
            +     + Y+   +L    G H   I      + +         
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAAST 224

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 7e-15
 Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 5/194 (2%)

Query: 397 YASAISIFDQILKEDP---MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWK 453
           + + I+      K                   A        + +       +        
Sbjct: 65  FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSS 124

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
           + G        +   ++  S +          L   G +       + A        +L 
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV 182

Query: 514 KENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALEC 573
             N   Y  L +  SS G++      + ++I +   F  A  +L +       S   ++ 
Sbjct: 183 PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKT 242

Query: 574 LQQVLYIDKRFSKA 587
              V    K F K 
Sbjct: 243 KWGVSDFIKAFIKF 256

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 1e-12
 Identities = 21/207 (10%), Positives = 52/207 (25%), Gaps = 34/207 (16%)

Query: 465 SVEAIQDLSKALEFEPNSAD-------ILHERG-------------------------IV 492
           S+++ Q L +A   + +  D       +   R                          + 
Sbjct: 2   SLQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW 61

Query: 493 NFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE 552
           N  FK+    ++  +        ++          ++ G Y +  +       +D     
Sbjct: 62  NHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV 121

Query: 553 AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGL 612
               L        ++   ++                   G +     Q  +A        
Sbjct: 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYI--CQHCLVHLGDIARYRNQTSQAESYYRHAA 179

Query: 613 GIDPSNIECLYLRASCYHAIGEYREAV 639
            + PSN +     A    + G++   +
Sbjct: 180 QLVPSNGQPYNQLAILASSKGDHLTTI 206

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 5e-08
 Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 5/127 (3%)

Query: 361 EAKRNKKFCVTRISKSKSISVDFRLS---RGIAQVNEGKYASAISIFDQILKEDPMYPEA 417
            A       +  +    ++ +  R+     GI    +   ++ +                
Sbjct: 97  AASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHC 154

Query: 418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALE 477
           L+  G    ++ +   A S +  A Q  PS G+ + +     ++ G+ +  I    +++ 
Sbjct: 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214

Query: 478 FEPNSAD 484
            +     
Sbjct: 215 VKFPFPA 221

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.004
 Identities = 8/71 (11%), Positives = 19/71 (26%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G       + + A S +    +  P   +         + + +    I  +  +I     
Sbjct: 159 GDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

Query: 448 AGEAWKRRGQA 458
              A     +A
Sbjct: 219 FPAASTNLQKA 229

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (208), Expect = 2e-18
 Identities = 49/273 (17%), Positives = 96/273 (35%), Gaps = 17/273 (6%)

Query: 385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQS 444
              G+ ++ EG   +A+ +F+  +++DP + EA    GT +A   +   AIS     ++ 
Sbjct: 23  FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 82

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN----------- 493
            P    A      +        +A + L   L + P  A ++                  
Sbjct: 83  KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 142

Query: 494 ----FKFKDFNAAVEDLSACVKL--DKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD 547
                    F    E   A V+L     +      LG+  +  GEY KA +    A+ + 
Sbjct: 143 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR 202

Query: 548 RNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKD 607
            N    W  L     +   SE+A+   ++ L +   + ++ +  G+    LG H++A++ 
Sbjct: 203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262

Query: 608 LSSGLGIDPSNIECLYLRASCYHAIGEYREAVI 640
               L +   +        +    I       +
Sbjct: 263 FLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL 295

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 1e-07
 Identities = 24/126 (19%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 474 KALEFEPN----SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           K  +FE            E G+   +  D   AV    A V+ D ++  A+ YLG   + 
Sbjct: 6   KGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYH 589
             +   A  A  + ++L  +   A   L   + + +   +A E L+  L     ++    
Sbjct: 66  NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 125

Query: 590 LRGLLL 595
                 
Sbjct: 126 PAEEGA 131

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.1 bits (204), Expect = 6e-18
 Identities = 25/243 (10%), Positives = 66/243 (27%), Gaps = 7/243 (2%)

Query: 390 AQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA--RAFQRELEAAISDFTEAIQSNPS 447
            + +     + +   +  L+ +P        R     R  +      +      ++++  
Sbjct: 82  PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141

Query: 448 -AGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                  RR  A  A     E +      +    ++    H R  +  +      +    
Sbjct: 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                +  +                   ++   + + +      L       +    L +
Sbjct: 202 RLPENVLLKELELVQ----NAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQS 257

Query: 567 SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRA 626
             ++ + LQ++   +K       L    L  L   K+ ++  S+   +DP     L    
Sbjct: 258 ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 317

Query: 627 SCY 629
           S +
Sbjct: 318 SKF 320

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (135), Expect = 3e-09
 Identities = 27/194 (13%), Positives = 61/194 (31%), Gaps = 13/194 (6%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV----------NFKFKDF 499
            A +   Q R A       ++  S+ L   P+ A + + R  V                 
Sbjct: 30  SATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALV 89

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGE--YKKAEEAHLKAIQLDRNFLEAWGHL 557
            A +  L +C++++ ++   + +    LS + E  + +  E   + ++ D      W + 
Sbjct: 90  KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYR 149

Query: 558 TQF-YQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
                Q      + L     ++  +     ++H R  LL  L     +         +  
Sbjct: 150 RFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL 209

Query: 617 SNIECLYLRASCYH 630
             +E +        
Sbjct: 210 KELELVQNAFFTDP 223

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.2 bits (134), Expect = 4e-09
 Identities = 12/153 (7%), Positives = 30/153 (19%), Gaps = 4/153 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           R            +               E +        F    + +   +   +    
Sbjct: 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPNDQSAWFYHRWLLGRA 239

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
                 +   +    L   +E+ ++L +           +                ++  
Sbjct: 240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF 299

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEA 539
           S    +D    +    L           K E A
Sbjct: 300 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYA 332

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 6/85 (7%), Positives = 18/85 (21%)

Query: 369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQ 428
              R    ++  +                  +     ++  E+      +I    A    
Sbjct: 230 FYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPL 289

Query: 429 RELEAAISDFTEAIQSNPSAGEAWK 453
              +  +  F+     +P       
Sbjct: 290 LYEKETLQYFSTLKAVDPMRAAYLD 314

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.4 bits (184), Expect = 4e-16
 Identities = 28/195 (14%), Positives = 63/195 (32%), Gaps = 6/195 (3%)

Query: 445 NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVE 504
           +PSA +  K +G       +  EA     +A+   P  A     R +   K +    A+ 
Sbjct: 1   SPSA-QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 59

Query: 505 DLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL 564
           D    ++LD ++  A+ +LG     +  Y +A     +A  L +     +G         
Sbjct: 60  DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL-- 117

Query: 565 ANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYL 624
                A +     +   +   ++     L      + ++ +++          +      
Sbjct: 118 ---RIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQ 174

Query: 625 RASCYHAIGEYREAV 639
           +A       +Y   +
Sbjct: 175 QACIEAKHDKYMADM 189

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.2 bits (168), Expect = 4e-14
 Identities = 23/188 (12%), Positives = 60/188 (31%), Gaps = 5/188 (2%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G       KY  A + + + +  +P+       R       ++ E A++D   A++ + 
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
            + +A    GQ +  +    EAI +L +A            +      +      A +  
Sbjct: 70  QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----IAKKKR 124

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
              ++  + ++ +  +  L      E ++  E   +  +   +                 
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDK 184

Query: 567 SEKALECL 574
               ++ L
Sbjct: 185 YMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 32/193 (16%), Positives = 68/193 (35%), Gaps = 5/193 (2%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKA 475
           + L  +G      R+   A + +  AI  NP     +  R      + +  +A+ D  +A
Sbjct: 5   QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64

Query: 476 LEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKK 535
           LE +  S       G    + + ++ A+ +L     L KE +  +     +       + 
Sbjct: 65  LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA-----LRI 119

Query: 536 AEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLL 595
           A++    +I+  R   E+  H        A  E+ LE  Q+     +        +  + 
Sbjct: 120 AKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179

Query: 596 HGLGQHKKAIKDL 608
               ++   + +L
Sbjct: 180 AKHDKYMADMDEL 192

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 20/187 (10%), Positives = 54/187 (28%), Gaps = 10/187 (5%)

Query: 355 LKETSNEAKRNKKF-----CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILK 409
           LKE  N     +K+     C  R      +   +  +R +  +   +   A++   + L+
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE 66

Query: 410 EDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAI 469
            D    +A    G  +      + AI++   A          +     +   +     A 
Sbjct: 67  LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AK 121

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
           +    ++E      +      +      +    +E+     +  +++           + 
Sbjct: 122 KKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAK 181

Query: 530 IGEYKKA 536
             +Y   
Sbjct: 182 HDKYMAD 188

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 3/163 (1%)

Query: 45  KLCSLRNWSKAIRILDSLLAQSYEIQDI-CNRAFCYSQLELHKHVIRDCDKALQLDPTLL 103
           +L   R + +A       + ++  +     NRA CY +++  +  + DC +AL+LD   +
Sbjct: 13  RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72

Query: 104 QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEY 163
           +A+   G     +   +EA++  ++ Y   L +   L    ++   L  AK+ R  + E 
Sbjct: 73  KAHFFLGQCQLEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130

Query: 164 DVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSSQSRD 206
              +  S L    + L A ++  E  E     +  +     R 
Sbjct: 131 RRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRA 173

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 75.2 bits (183), Expect = 1e-15
 Identities = 40/239 (16%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 388 GIAQVNEGKYASAISIFDQILKE----DPMYPEALIGRGTARAFQRELEAAISDFTEAIQ 443
            +      +    ++  +QIL      D    + L  RG           A +DF++A+ 
Sbjct: 6   AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 65

Query: 444 SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAV 503
             P   E +   G      G    A +     LE +P        RGI  +       A 
Sbjct: 66  IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125

Query: 504 EDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRN--FLEAWGHLTQFY 561
           +DL A  + D  +     +L LA   + E +  E       + D+               
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185

Query: 562 QDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIE 620
            +    E+          + +  S+     G     LG    A       +  +  N  
Sbjct: 186 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 6/216 (2%)

Query: 430 ELEAAISDFTEAIQS----NPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADI 485
           + E  ++   + + S    +    +    RG    +LG    A  D S+AL   P+  ++
Sbjct: 14  QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 73

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
            +  GI   +  +F+AA E   + ++LD     A+   G+AL   G  K A++  L   Q
Sbjct: 74  FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 133

Query: 546 LDRNFLE--AWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKK 603
            D N      W +L +   D   +++ L+   +    ++            +      ++
Sbjct: 134 DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER 193

Query: 604 AIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREAV 639
              D +    +     E  +     Y ++G+   A 
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSAT 229

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 68.3 bits (165), Expect = 2e-13
 Identities = 44/232 (18%), Positives = 74/232 (31%), Gaps = 2/232 (0%)

Query: 371 TRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRE 430
              + +          RG+   + G  A A + F Q L   P  PE     G        
Sbjct: 27  ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            +AA   F   ++ +P+   A   RG A    G    A  DL    + +PN         
Sbjct: 87  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146

Query: 491 IVNFKFKDFNAAVEDLSACVKLDKENK--SAYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
           +   K  +  A         K DKE    +   +    +S     ++ +        L  
Sbjct: 147 LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 206

Query: 549 NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
           +  E   +L ++Y  L + + A    +  +  +      +    L L  LGQ
Sbjct: 207 HLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 561 YQDLANSEKALECLQQVLYI----DKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
            Q     E  L  ++Q+L      D   ++  + RG+L   LG    A  D S  L I P
Sbjct: 9   LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 68

Query: 617 SNIECLYLRASCYHAIGEYRE 637
              E            G +  
Sbjct: 69  DMPEVFNYLGIYLTQAGNFDA 89

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 3e-14
 Identities = 31/197 (15%), Positives = 61/197 (30%), Gaps = 33/197 (16%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
            G+   ++  +  A+  F  +      +       G      + +  A   FT +I  + 
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+ +RG       +   AI+DL +AL     +  I ++   + FK           
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE------ 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN 566
                           +    +   E+KKAEE    A  +                  + 
Sbjct: 122 ------------VLYNIAFMYAKKEEWKKAEEQLALATSMKSE------------PRHSK 157

Query: 567 SEKALECLQQVLYIDKR 583
            +KA+EC+ +    +  
Sbjct: 158 IDKAMECVWKQKLYEPV 174

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.4 bits (148), Expect = 2e-11
 Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 19/149 (12%)

Query: 486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ 545
           L   G++    KD+  A++  S    +   +      +G   + +    +AE+A  ++I 
Sbjct: 8   LWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64

Query: 546 LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK----------------RFSKAYH 589
            D++   A+      Y      + A++ L++ L   +                   +  +
Sbjct: 65  RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLY 124

Query: 590 LRGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
               +     + KKA + L+    +    
Sbjct: 125 NIAFMYAKKEEWKKAEEQLALATSMKSEP 153

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 19/133 (14%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G+  +   ++K A +A                ++   Y  L N  +A +   + +  DK
Sbjct: 11  EGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRDK 67

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN----------------IECLYLRA 626
             + AY  RG+L +   ++  AIKDL   L     N                 E LY  A
Sbjct: 68  HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA 127

Query: 627 SCYHAIGEYREAV 639
             Y    E+++A 
Sbjct: 128 FMYAKKEEWKKAE 140

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 2/100 (2%)

Query: 33  MASAITARIELAKLCSLRNWSKAIRILDSLLAQSYEIQDICNRAFCYSQLELHKHVIRDC 92
           +  AI+   E       ++W  A+    ++      I    N    Y+ L+      +  
Sbjct: 2   LVEAISLWNEGVLAADKKDWKGALDAFSAVQDPHSRI--CFNIGCMYTILKNMTEAEKAF 59

Query: 93  DKALQLDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEH 132
            +++  D  L  AY  +G  +    + + A+   ++    
Sbjct: 60  TRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 99

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 4e-13
 Identities = 26/200 (13%), Positives = 66/200 (33%), Gaps = 7/200 (3%)

Query: 441 AIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKF-KDF 499
            I  +    + +            S  A +    A+E    +  + H R ++     KD 
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 500 NAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQ 559
           +  +  ++A ++   +N   + +  + +  + +  +  E     +  D     AW H   
Sbjct: 95  HEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 154

Query: 560 FYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLG------QHKKAIKDLSSGLG 613
             Q+    +  L+ + Q+L  D R +  ++ R  ++            ++ ++     + 
Sbjct: 155 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK 214

Query: 614 IDPSNIECLYLRASCYHAIG 633
           + P N              G
Sbjct: 215 LVPHNESAWNYLKGILQDRG 234

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 7e-13
 Identities = 29/235 (12%), Positives = 78/235 (33%), Gaps = 8/235 (3%)

Query: 411 DPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV-EAI 469
              + +               E A     +AI+ N +    W  R     +L + + E +
Sbjct: 39  SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEM 98

Query: 470 QDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS 529
             ++  +E +P +  + H R ++    +D +  +E ++  +  D +N  A+ +    +  
Sbjct: 99  NYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQE 158

Query: 530 IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDL------ANSEKALECLQQVLYIDKR 583
              +    +   + ++ D      W        +       A  E+ ++   +++ +   
Sbjct: 159 FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 218

Query: 584 FSKAYHLRGLLLHGLG-QHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
              A++    +L   G      + +    L    S+   +      Y  + E + 
Sbjct: 219 NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 273

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 14/107 (13%), Positives = 39/107 (36%), Gaps = 1/107 (0%)

Query: 533 YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRG 592
            +      +  I     F + + +     Q    SE+A +  +  + ++      +H R 
Sbjct: 25  PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84

Query: 593 LLLHGLGQH-KKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           +LL  L +   + +  +++ +   P N +  + R      + +  + 
Sbjct: 85  VLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQE 131

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 3/139 (2%)

Query: 457 QARAAL--GESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDK 514
           Q + AL  G+  +A++ L +A++  P  A +      +     DF  A E L   +KL  
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 515 ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-LEAWGHLTQFYQDLANSEKALEC 573
           E     + L   + +    K   +    A  L  N  L              + E+  E 
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSEL 121

Query: 574 LQQVLYIDKRFSKAYHLRG 592
             Q+  + +      +   
Sbjct: 122 ALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 1/136 (0%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEA 451
           ++EG+   A+ +  + +K  P                 + E A     ++I+  P     
Sbjct: 7   LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 452 WKRRGQARAALGESVEAIQDLSKALEFE-PNSADILHERGIVNFKFKDFNAAVEDLSACV 510
             +      A     +  Q  + A                 ++   +D+    E      
Sbjct: 67  ASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIE 126

Query: 511 KLDKENKSAYTYLGLA 526
           +L +E          +
Sbjct: 127 ELRQEKGFLANDTSFS 142

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 16/131 (12%), Positives = 43/131 (32%), Gaps = 1/131 (0%)

Query: 428 QRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILH 487
           + +L+ A+    EAI+++P          +     G+   A + L ++++  P       
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 68

Query: 488 ERGIVNFKFKDFNAAVEDLSACVKLDK-ENKSAYTYLGLALSSIGEYKKAEEAHLKAIQL 546
           +   +    +      +  +    L + E  +             +Y++  E  L+  +L
Sbjct: 69  QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128

Query: 547 DRNFLEAWGHL 557
            +         
Sbjct: 129 RQEKGFLANDT 139

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.6 bits (149), Expect = 5e-11
 Identities = 13/112 (11%), Positives = 26/112 (23%), Gaps = 1/112 (0%)

Query: 380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA-RAFQRELEAAISDF 438
               R S       +G +  A     Q +K  P Y           +A Q   + A    
Sbjct: 29  DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA 88

Query: 439 TEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
           T  +                     +  +  +   +  E       + ++  
Sbjct: 89  TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDTS 140

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 61.2 bits (148), Expect = 5e-11
 Identities = 14/122 (11%), Positives = 40/122 (32%), Gaps = 1/122 (0%)

Query: 498 DFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
               A+E L   +K   ++ S  +     L   G++++A+E  +++I+L   +L     L
Sbjct: 11  QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 70

Query: 558 TQFYQDLANSEKALECLQQVLYIDKRFS-KAYHLRGLLLHGLGQHKKAIKDLSSGLGIDP 616
               +     +   +       + +        +   L      +++  +       +  
Sbjct: 71  RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 130

Query: 617 SN 618
             
Sbjct: 131 EK 132

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 60.8 bits (147), Expect = 7e-11
 Identities = 13/109 (11%), Positives = 35/109 (32%), Gaps = 1/109 (0%)

Query: 531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHL 590
           G+ ++A E  ++AI+             +      + E+A E L Q + +   +      
Sbjct: 10  GQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 69

Query: 591 RGLLLHGLGQHKKAIKDLSSGLGID-PSNIECLYLRASCYHAIGEYREA 638
              L+      K   +  ++   +     +    +  +      +Y + 
Sbjct: 70  LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQV 118

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 58.0 bits (138), Expect = 1e-09
 Identities = 39/306 (12%), Positives = 83/306 (27%), Gaps = 41/306 (13%)

Query: 375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDP-----MYPEALIGRGTARAFQR 429
           +  ++  +F   R    +N+G    A  +    L+E P         A    G     + 
Sbjct: 6   REDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG 65

Query: 430 ELEAAISDFTEAIQ------SNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEP--- 480
           EL  +++   +  Q          A  +  ++ +   A G    A +   KA +      
Sbjct: 66  ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH 125

Query: 481 -----NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKS-----AYTYLGLALSSI 530
                    ++  R  + + +   + A     + +++    +          L     + 
Sbjct: 126 LEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 185

Query: 531 GEYKKAEEAHLKAIQLDRNFLE-------AWGHLTQFYQDLANSEKALECLQQVLYIDKR 583
           G+   A     +   L  N          A      ++Q   +   A   L+     +  
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA 245

Query: 584 FSKA----YHLRGLLLHGLGQHKKAIKDLSSGL------GIDPSNIECLYLRASCYHAIG 633
            +      +         LG+ + A   L           +       L L    Y   G
Sbjct: 246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305

Query: 634 EYREAV 639
              +A 
Sbjct: 306 RKSDAQ 311

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 31/229 (13%), Positives = 60/229 (26%), Gaps = 31/229 (13%)

Query: 440 EAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-----ADILHERGIVNF 494
           + I+ +    E    R Q     G   EA +    ALE  P              G V  
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 495 KFKDFNAAVEDLSACVKLDKENKS------AYTYLGLALSSIGEYKKAEEAHLKAIQLDR 548
              +   ++  +    ++ +++        +       L + G  + A E   KA QL  
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLIN 122

Query: 549 NFL--------EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--- 597
                             Q     A  ++A    +  + +   +     L+ L +     
Sbjct: 123 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182

Query: 598 ---------LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
                      Q  +    L +G            +R   +   G+   
Sbjct: 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 231

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 24/187 (12%), Positives = 43/187 (22%), Gaps = 38/187 (20%)

Query: 400 AISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQ----SNPSAGEAWKRR 455
             ++             A   R        +  AA +      +    +N      W+  
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257

Query: 456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKE 515
            +A+  LGE   A   L +  E   +   +                              
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLN-------------------------- 291

Query: 516 NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLD------RNFLEAWGHLTQFYQDLANSEK 569
                  L       G    A+   L A++L        +F+     + Q  + L     
Sbjct: 292 --RNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNT 349

Query: 570 ALECLQQ 576
             E  Q 
Sbjct: 350 LPELEQH 356

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 22/127 (17%), Positives = 33/127 (25%), Gaps = 10/127 (7%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY---- 522
                L          ++    R I      D  AA   L    K +  N          
Sbjct: 197 RLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256

Query: 523 LGLALSSIGEYKKAEEAHLKAI------QLDRNFLEAWGHLTQFYQDLANSEKALECLQQ 576
           +  A   +GE++ AE    +        +L  +       L Q Y        A   L  
Sbjct: 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 316

Query: 577 VLYIDKR 583
            L +  R
Sbjct: 317 ALKLANR 323

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 8e-09
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY---QDLANSEKALECLQQVLYIDK 582
            L S+ +  K E+                          +   +  K +  L+++L    
Sbjct: 8   ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS 67

Query: 583 --RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIG 633
                       +  + L +++KA+K +   L  +P N +   L      A+ 
Sbjct: 68  KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 5/107 (4%)

Query: 392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA---AISDFTEAIQ--SNP 446
           V+          F        +               R  +     I    E +   S  
Sbjct: 10  VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE 69

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN 493
              +           L E  +A++ +   L+ EP +        +++
Sbjct: 70  EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 116

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 5/103 (4%)

Query: 497 KDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEA-----HLKAIQLDRNFL 551
           +D     +   +       +KS        L          +       L          
Sbjct: 13  EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQR 72

Query: 552 EAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL 594
           +   +L      L   EKAL+ ++ +L  + + ++A  L  L+
Sbjct: 73  DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 6e-05
 Identities = 11/110 (10%), Positives = 33/110 (30%), Gaps = 5/110 (4%)

Query: 461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNA---AVEDLSACVKLDKENK 517
           ++ + ++  +           S     E      + +  +     +  L   +    + +
Sbjct: 11  SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE 70

Query: 518 S--AYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
                 YL +    + EY+KA +     +Q +    +A        + + 
Sbjct: 71  QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 9e-09
 Identities = 31/149 (20%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           A+ L  +    FK KD+  A++  S  ++L+  N   Y    LA      Y  A     +
Sbjct: 10  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 69

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLL--LHGLGQ 600
           AI+LD+ +++ +         L     AL   + V+ +      A         +     
Sbjct: 70  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 129

Query: 601 HKKAI------KDLSSGLGIDPSNIECLY 623
            ++AI      + +   L I+   IE  Y
Sbjct: 130 FERAIAGDEHKRSVVDSLDIESMTIEDEY 158

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 9e-07
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 2/129 (1%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
           E  K +        +   AI+  S+A+E  P++A     R +   + + +  A+ D +  
Sbjct: 11  EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA 70

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL--TQFYQDLANS 567
           ++LDK+    Y     +  ++G+++ A   +   +++  +  +A                
Sbjct: 71  IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130

Query: 568 EKALECLQQ 576
           E+A+   + 
Sbjct: 131 ERAIAGDEH 139

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 52.3 bits (124), Expect = 2e-08
 Identities = 32/158 (20%), Positives = 52/158 (32%), Gaps = 19/158 (12%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
             A I+ E+G V FK   +  AV      V                        +   + 
Sbjct: 13  EQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWL-------------------EMEYGLSE 53

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
            ++   +   L A+ +L   Y  L    KA+EC  + L +D    K  + RG     + +
Sbjct: 54  KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE 113

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            + A  D    L ++P N         C     E+ E 
Sbjct: 114 FESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 24/158 (15%), Positives = 50/158 (31%), Gaps = 19/158 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G      GKY  A+  + +                                 E+  S  
Sbjct: 21  KGTVYFKGGKYVQAVIQYGK-------------------IVSWLEMEYGLSEKESKASES 61

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDL 506
               A+         L E  +A++   KAL  +  +   L+ RG       +F +A  D 
Sbjct: 62  FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 121

Query: 507 SACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAI 544
              ++++ +NK+A   + +      E+ + +      +
Sbjct: 122 EKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM 159

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 38.8 bits (89), Expect = 7e-04
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 15/136 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEF---------------EPNSADILHERGIVNF 494
              K +G      G+ V+A+    K + +               E           +   
Sbjct: 16  AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 75

Query: 495 KFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAW 554
           K +++  AVE     + LD  N+      G A   + E++ A+    K ++++     A 
Sbjct: 76  KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135

Query: 555 GHLTQFYQDLANSEKA 570
             +    +      + 
Sbjct: 136 LQIFMCQKKAKEHNER 151

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 23/128 (17%), Positives = 31/128 (24%), Gaps = 12/128 (9%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
            A K  G   AA G   +A + LS AL                     D           
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDDLRDFQFVEPFA 59

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEK 569
             L ++   A+T    A  + G                      W  L   Y        
Sbjct: 60  TALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSD 119

Query: 570 ALECLQQV 577
           AL   ++V
Sbjct: 120 ALGAYRRV 127

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 22/122 (18%)

Query: 416 EALIGRGTARAFQRELEAAISDFTEAIQSNPSAG----------------------EAWK 453
            A    G   A     E A    + A++                             A  
Sbjct: 12  VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHT 71

Query: 454 RRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLD 513
            + +A  A G +   I +L       P    +  +     +     + A+          
Sbjct: 72  AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTL 131

Query: 514 KE 515
            +
Sbjct: 132 AD 133

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 15/130 (11%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K  G       +   A++   KA E +P +   +  +  V F+  D+N   E     
Sbjct: 5   LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA 64

Query: 510 VKLDKENKSAYTY-------LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQ 562
           +++ +EN+  Y         +G +     +YK A   + K++   R             +
Sbjct: 65  IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT--------PDVLK 116

Query: 563 DLANSEKALE 572
               +EK L+
Sbjct: 117 KCQQAEKILK 126

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 7/103 (6%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
           LG       ++  A + + KA +LD   +    +    Y +  +  K  E  ++ + + +
Sbjct: 10  LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69

Query: 583 RFSKAYHL-------RGLLLHGLGQHKKAIKDLSSGLGIDPSN 618
              + Y          G       ++K AI   +  L    + 
Sbjct: 70  ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPS 447
           G     +  + +A+  +D+  + DP     +  +      + +         +AI+    
Sbjct: 11  GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE 70

Query: 448 AGE-------AWKRRGQARAALGESVEAIQDLSKALEFEPN 481
             E       A+ R G +     +  +AI   +K+L     
Sbjct: 71  NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.8 bits (112), Expect = 6e-07
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 22/172 (12%)

Query: 467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLA 526
             ++D+ K L      ++ L   G   FK +++  A++  +  ++  + +++A       
Sbjct: 15  VDLKDVDKILLI----SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA--- 67

Query: 527 LSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSK 586
                             +L    L    ++      +++ + A++   + L ID   +K
Sbjct: 68  ---------------DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 112

Query: 587 AYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
           A + R     GL ++ +A+ DL     I P +             I   ++ 
Sbjct: 113 ALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 29/132 (21%), Positives = 46/132 (34%), Gaps = 16/132 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQI----------------LKEDPMYPEALIGRGTARAFQRE 430
            G        +  AI  + ++                 K  P+    ++  G  +    +
Sbjct: 33  IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD 92

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
            + A+    EA++ +PS  +A  RR Q    L E  +A+ DL KA E  P    I  E  
Sbjct: 93  WQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL 152

Query: 491 IVNFKFKDFNAA 502
            V  K K     
Sbjct: 153 KVKQKIKAQKDK 164

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 21/106 (19%), Positives = 42/106 (39%)

Query: 387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP 446
           +G   ++ G    A+  + + +K DP        R  A A + + + A  D  + +   P
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 447 SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIV 492
             G+ + R+  A   L    EA +   + L+ E N+  +      +
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 114

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 22/108 (20%), Positives = 48/108 (44%)

Query: 450 EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSAC 509
              K +G    ++G   +A+Q  S+A++ +P++  +   R     K  D+  A ED    
Sbjct: 4   NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 63

Query: 510 VKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHL 557
           V L  +    Y+    AL  +  +++A+  + + ++ + N  +    L
Sbjct: 64  VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 4e-05
 Identities = 20/107 (18%), Positives = 44/107 (41%)

Query: 523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDK 582
            G    S+G    A + + +AI+LD +    + + +  Y    + +KA E   + + +  
Sbjct: 9   KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP 68

Query: 583 RFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCY 629
            + K Y  +   L  L + ++A +    GL  + +N +      +  
Sbjct: 69  DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (100), Expect = 6e-06
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 482 SADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSA-------YTYLGLALSSIGEYK 534
           +A+   E G V +   D+      +   ++   E + +         YL  A+   G+  
Sbjct: 4   TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLD 63

Query: 535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA 565
           KA     K ++LD     A G+L  F   +A
Sbjct: 64  KALLLTKKLLELDPEHQRANGNLKYFEYIMA 94

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 18/157 (11%)

Query: 481 NSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH 540
            SA  + E G   FK  + N A+      +      +     + L               
Sbjct: 15  QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-------------- 60

Query: 541 LKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQ 600
               +     +    +L   Y    +  KA++   +VL IDK   KA +  G+     G 
Sbjct: 61  ----KKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 116

Query: 601 HKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYRE 637
            ++A ++L     ++P+N++       C + + E R+
Sbjct: 117 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 387 RGIAQVNEGKYASAISIFDQ----------------ILKEDPMYPEALIGRGTARAFQRE 430
            G     + +   AI  + +                + K+  +     +   T     ++
Sbjct: 23  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD 82

Query: 431 LEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERG 490
              AI   ++ ++ + +  +A  + G A    G   EA ++L KA    PN+ DI +   
Sbjct: 83  YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYE 142

Query: 491 IVNFKFKDFN 500
           +   K K+  
Sbjct: 143 LCVNKLKEAR 152

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 483 ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLK 542
           + I+ ERG V FK   +  A+      V                        ++  ++ +
Sbjct: 13  STIVKERGTVYFKEGKYKQALLQYKKIVSWL-------------------EYESSFSNEE 53

Query: 543 AIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK 602
           A +     L +  +L   +  L     A+E   + L +D    K    RG     +   +
Sbjct: 54  AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 113

Query: 603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYREA 638
            A  D    L + P+N       A C   I      
Sbjct: 114 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 15/135 (11%)

Query: 387 RGIAQVNEGKYASAISIFDQI---------------LKEDPMYPEALIGRGTARAFQREL 431
           RG     EGKY  A+  + +I                K   +   + +         +  
Sbjct: 19  RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 78

Query: 432 EAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGI 491
            AAI    +A++ + +  +   RRG+A  A+ +   A  D  K L+  PN+     +  +
Sbjct: 79  SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAV 138

Query: 492 VNFKFKDFNAAVEDL 506
              + +   A  + L
Sbjct: 139 CQQRIRRQLAREKKL 153

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (89), Expect = 0.001
 Identities = 22/199 (11%), Positives = 50/199 (25%), Gaps = 26/199 (13%)

Query: 448 AGEAWKRRGQARAALGESVEAIQDLSKALE------FEPNSADILHERGIVNFKFKDFNA 501
           A +   +         E   A     KA +       E  + +   E         +   
Sbjct: 36  AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95

Query: 502 AVEDLSACVKLDKENKSAYTYLGLAL-------SSIGEYKKAEEAHLKAIQLDRN----- 549
           AV+ L   +++                      + + +Y KA + +  A +         
Sbjct: 96  AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155

Query: 550 -FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLLLHGLGQH 601
              + +              +A +   +++                +  +GL        
Sbjct: 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDA 215

Query: 602 KKAIKDLSSGLGIDPSNIE 620
             A + L  G   DP+  +
Sbjct: 216 VAAARTLQEGQSEDPNFAD 234

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	640
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	100.0
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.96
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.95
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.91
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.89
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.87
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.86
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.85
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.8
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.67
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.67
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.66
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.64
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.61
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.6
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.58
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.56
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.52
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.51
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.4
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.4
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.4
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.39
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.39
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	99.33
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.32
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.32
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.03
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.03
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.98
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.96
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.87
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.65
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.06
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.96
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.96
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.97
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.27
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.06
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.22

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-38  Score=321.70  Aligned_cols=381  Identities=16%  Similarity=0.154  Sum_probs=338.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHcccC-chhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 006562           44 AKLCSLRNWSKAIRILDSLLAQSY-EIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGRKEEA  122 (640)
Q Consensus        44 ~~~~~~~~y~~Ai~~y~~ai~~~~-~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~~~~A  122 (640)
                      ..+|+.|+|++|+..|+++++.+| ++.+++.+|.+|.++|++++|+..++++++.+|+++.+++.+|.+|..+|++++|
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A   86 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccc
Confidence            357999999999999999999995 4677999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCChHHHHHHHhHHHHHHHHhhhccchhhhhhcccccccccccCCCCCCCcchhhhhcCCCCCcccccc
Q 006562          123 LSVWEKGYEHALHQSADLKQFLELEELLTAAKQDRSVTCEYDVSNSMSSLTVSESGLNANDKMSETSENHNKSDICDSSS  202 (640)
Q Consensus       123 ~~~~~~al~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (640)
                      +..|..+++..|...............       .      .                                      
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~--------------------------------------  115 (388)
T d1w3ba_          87 IEHYRHALRLKPDFIDGYINLAAALVA-------A------G--------------------------------------  115 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-------H------S--------------------------------------
T ss_pred             ccccccccccccccccccccccccccc-------c------c--------------------------------------
Confidence            999999988777654332211110000       0      0                                      


Q ss_pred             CCccccccccCCCCCCCCcccccccccCCCcccccccccccCCccccccccCCCCCCCCccccccccchhhccccCCccc
Q 006562          203 QSRDVSETCSKSSHDPDLCNGRSDEAKGGSSVPVSKSGLHINGKLREVSENHNGSSDGSKSTHASRDASEINRQSSDDFD  282 (640)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (640)
                                                                                                      
T Consensus       116 --------------------------------------------------------------------------------  115 (388)
T d1w3ba_         116 --------------------------------------------------------------------------------  115 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCcccccccCCcccccccccccccccCccCCCCCCCCcccccccccCCCCCCchHHHHHhhHHHhhhhHHHHHHH
Q 006562          283 ICNGPIDKASVNERHGRQTNGTHDVHDKLSSDSASLNDSNTNSESYSKSSISDNKSSDSTESRSKLSFKWDMLKETSNEA  362 (640)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (640)
                                                                            .......                   
T Consensus       116 ------------------------------------------------------~~~~~~~-------------------  122 (388)
T d1w3ba_         116 ------------------------------------------------------DMEGAVQ-------------------  122 (388)
T ss_dssp             ------------------------------------------------------CSSHHHH-------------------
T ss_pred             ------------------------------------------------------ccccccc-------------------
Confidence                                                                  0000000                   


Q ss_pred             HhhHHHHHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 006562          363 KRNKKFCVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAI  442 (640)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  442 (640)
                            .........+.........+......+....+...+.+.+...|+++.++..+|.++...|++++|...+++++
T Consensus       123 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al  196 (388)
T d1w3ba_         123 ------AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV  196 (388)
T ss_dssp             ------HHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             ------ccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHH
Confidence                  00011112333345556667778888999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          443 QSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTY  522 (640)
Q Consensus       443 ~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  522 (640)
                      +.+|+++.++..+|.++...|++++|+..++++....|.....+..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus       197 ~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~  276 (388)
T d1w3ba_         197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN  276 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHH
T ss_pred             HhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      +|.++...|++++|+..++.++...|.....+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus       277 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  356 (388)
T d1w3ba_         277 LANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ  356 (388)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCHHHHHHHHHHHHHcCC
Q 006562          603 KAIKDLSSGLGIDPSNIECLYLRASCYHAIGE  634 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  634 (640)
                      +|+..|+++++++|++++++.++|.+|.++|+
T Consensus       357 ~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         357 EALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999986

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-32  Score=274.55  Aligned_cols=265  Identities=21%  Similarity=0.225  Sum_probs=253.1

Q ss_pred             ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (640)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (640)
                      ...+.........+......+.+..+...........+.........+......+....+...+.+.+...|+++.++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (388)
T d1w3ba_          95 RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSN  174 (388)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHh
Confidence            34555666777777888888888899999988888888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          455 RGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       455 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (640)
                      +|.++...|++++|...+++++..+|+++.++..+|.++...|++++|+..++++....|.....+..+|.++...|+++
T Consensus       175 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  254 (388)
T d1w3ba_         175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID  254 (388)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 006562          535 KAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGI  614 (640)
Q Consensus       535 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  614 (640)
                      +|+..|+++++.+|+++.++..+|.++...|++++|+..++.++...|.....+..+|.++...|++++|+..|++++++
T Consensus       255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  334 (388)
T d1w3ba_         255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCccccc
Q 006562          615 DPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       615 ~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +|+++.+++.+|.++..+|++++|+
T Consensus       335 ~p~~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         335 FPEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999999999986

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-27  Score=234.43  Aligned_cols=259  Identities=19%  Similarity=0.226  Sum_probs=233.1

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      +....+.+|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|.++++.+|++..++..+|.++
T Consensus        18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~   97 (323)
T d1fcha_          18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF   97 (323)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccc
Confidence            44446789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHH---------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--HHHHHH
Q 006562          460 AALGESVEAIQDLSKALEFEPNSADIL---------------HERGIVNFKFKDFNAAVEDLSACVKLDKEN--KSAYTY  522 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~~~~---------------~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~  522 (640)
                      ...|++++|+..+++++...|......               ......+...+.+.+|...+.+++..+|+.  +.++..
T Consensus        98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~  177 (323)
T d1fcha_          98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG  177 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred             cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence            999999999999999999988753311               112233455678899999999999999874  678899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Q 006562          523 LGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHK  602 (640)
Q Consensus       523 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  602 (640)
                      +|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCCCHH-----------HHHHHHHHHHHcCCcccc
Q 006562          603 KAIKDLSSGLGIDPSNIE-----------CLYLRASCYHAIGEYREA  638 (640)
Q Consensus       603 ~A~~~~~~al~~~p~~~~-----------~~~~la~~~~~~g~~~~A  638 (640)
                      +|+..|+++++++|++..           +|..++.++..+|+.+.+
T Consensus       258 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         258 EAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             HHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999888764           456678888888887643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-25  Score=219.85  Aligned_cols=170  Identities=18%  Similarity=0.175  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH---------------HHHHHHHHccCHHHHHHHHHHHHHhCC
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALI---------------GRGTARAFQRELEAAISDFTEAIQSNP  446 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~---------------~la~~~~~~g~~~~A~~~~~~al~~~p  446 (640)
                      ..++.+|.++...|++++|+..+++++...|.......               .....+...+.+.+|+..|.+++..+|
T Consensus        88 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p  167 (323)
T d1fcha_          88 TALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP  167 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             cccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            34455667777777777777777777777766432211               111122333445555555666555555


Q ss_pred             Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 006562          447 SA--GEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLG  524 (640)
Q Consensus       447 ~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la  524 (640)
                      +.  +.++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..|+++++.+|+++.+++.+|
T Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg  247 (323)
T d1fcha_         168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG  247 (323)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHH
Confidence            42  3445555555656666666666666666666655555555666666666666666666666665565555555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHccCcccH
Q 006562          525 LALSSIGEYKKAEEAHLKAIQLDRNFL  551 (640)
Q Consensus       525 ~~~~~~g~~~~A~~~~~~a~~~~~~~~  551 (640)
                      .++...|++++|+..|++++.++|++.
T Consensus       248 ~~~~~~g~~~~A~~~~~~al~l~p~~~  274 (323)
T d1fcha_         248 ISCINLGAHREAVEHFLEALNMQRKSR  274 (323)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcCh
Confidence            666666666666666666655555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-23  Score=200.04  Aligned_cols=254  Identities=15%  Similarity=0.112  Sum_probs=221.0

Q ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          377 KSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQR-ELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       377 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      +|...+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..+|..+
T Consensus        39 ~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          39 SDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             CHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            45557788888999999999999999999999999999999999999999987 59999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGE---  532 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~---  532 (640)
                      |.++..+|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++++|.+..+|..+|.++...+.   
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988776   


Q ss_pred             ---HHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHhc--CC-----
Q 006562          533 ---YKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR--FSKAYHLRGLLLHGL--GQ-----  600 (640)
Q Consensus       533 ---~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~--g~-----  600 (640)
                         +++|+..+.+++..+|++..+|..++.++...| .+++...+++++++.|.  ++.++..++.++...  ++     
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence               689999999999999999999999999876544 68899999999888875  455666777776543  34     


Q ss_pred             --HHHHHHHHHHh-hccCCCCHHHHHHHHHHHHH
Q 006562          601 --HKKAIKDLSSG-LGIDPSNIECLYLRASCYHA  631 (640)
Q Consensus       601 --~~~A~~~~~~a-l~~~p~~~~~~~~la~~~~~  631 (640)
                        +++|...+... .+.+|-....|..++..+..
T Consensus       278 ~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~~  311 (315)
T d2h6fa1         278 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  311 (315)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              34444444442 34577666777777766543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.6e-22  Score=193.35  Aligned_cols=223  Identities=13%  Similarity=0.138  Sum_probs=204.7

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Q 006562          409 KEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALG-ESVEAIQDLSKALEFEPNSADILH  487 (640)
Q Consensus       409 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~  487 (640)
                      ..+|+..+++..+|.++...+.+++|+..++++++++|.+..+|..+|.++...| ++++|+..++++++.+|++..+|.
T Consensus        37 ~~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~  116 (315)
T d2h6fa1          37 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH  116 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHH
Confidence            3456778889999999999999999999999999999999999999999999987 499999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC-
Q 006562          488 ERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN-  566 (640)
Q Consensus       488 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-  566 (640)
                      .+|.++..+|++++|+..+.++++++|++..+|..+|.++...|++++|+..++++++.+|.+..+|.++|.++...+. 
T Consensus       117 ~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         117 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             HHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888776 


Q ss_pred             -----HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCC--CHHHHHHHHHHHHHc
Q 006562          567 -----SEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPS--NIECLYLRASCYHAI  632 (640)
Q Consensus       567 -----~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~  632 (640)
                           +++|+..+.+++..+|++..+|..++.++...| ..++...++.++++.|+  ++.++..++.+|...
T Consensus       197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~  268 (315)
T d2h6fa1         197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM  268 (315)
T ss_dssp             CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence                 689999999999999999999999999876544 68889999999887775  456667777777543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=5.2e-21  Score=180.66  Aligned_cols=222  Identities=18%  Similarity=0.125  Sum_probs=144.2

Q ss_pred             hHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          397 YASAISIFDQILKEDP----MYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDL  472 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~  472 (640)
                      .+.|+..+++++...+    ..+.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~   94 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF   94 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence            4455555556654322    234567777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHH
Q 006562          473 SKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLE  552 (640)
Q Consensus       473 ~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~  552 (640)
                      +++++++|+++.++..+|.++...|++++|+..++++++.+|++......++.++...+..+.+...........+....
T Consensus        95 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (259)
T d1xnfa_          95 DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG  174 (259)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred             hHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh
Confidence            77777777777777777777777777777777777777777777766666666666666555554444444443333221


Q ss_pred             H---HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCH
Q 006562          553 A---WGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNI  619 (640)
Q Consensus       553 ~---~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  619 (640)
                      .   ...++. ....+..+.+...+.......|....+++.+|.++...|++++|+.+|++++..+|++.
T Consensus       175 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~  243 (259)
T d1xnfa_         175 WNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF  243 (259)
T ss_dssp             HHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred             hhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence            1   111111 11223345555555555555666667777888888888888888888888888888764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=4.1e-21  Score=188.67  Aligned_cols=257  Identities=11%  Similarity=-0.047  Sum_probs=171.8

Q ss_pred             HhhhhccCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHH
Q 006562          370 VTRISKSKSISVDFRLSRGIAQVNEGK----------YASAISIFDQILKEDPMYPEALIGRGTARAFQRE--LEAAISD  437 (640)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--~~~A~~~  437 (640)
                      ..+++..+|.+..+|..++.++...+.          +.+|+..++++++.+|.++.+|..+|.++...++  +++|+..
T Consensus        52 ~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~  131 (334)
T d1dcea1          52 TSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL  131 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHH
Confidence            444445555555555555544433322          4555555555555555555555555555554443  5555555


Q ss_pred             HHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          438 FTEAIQSNPSAGEAW-KRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       438 ~~~al~~~p~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      +.+++..+|.+..++ ...|.++...+.+++|+..+++++..+|.+..+|..+|.++...|++++|...+.+++...|..
T Consensus       132 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  211 (334)
T d1dcea1         132 CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKE  211 (334)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHH
T ss_pred             HHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHH
Confidence            555555555555443 2344555555555555555555555555555555555555555555555555555555554433


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLH  596 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  596 (640)
                      ...+    ..+...+..+++...+.+++...|.....+..++.++...|++.+|+..+.+++..+|.+..++..+|.++.
T Consensus       212 ~~~~----~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  287 (334)
T d1dcea1         212 LELV----QNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALD  287 (334)
T ss_dssp             HHHH----HHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHH----HHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            3222    223334455566677777777777777777888999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 006562          597 GLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYH  630 (640)
Q Consensus       597 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  630 (640)
                      ..|++++|+.+|+++++++|.+...|..++..+.
T Consensus       288 ~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         288 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            9999999999999999999999999999988876

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.4e-21  Score=191.98  Aligned_cols=174  Identities=9%  Similarity=-0.152  Sum_probs=139.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  465 (640)
                      ..|..+...+.+++|+..++++++.+|.+..+|..+|.++...|++++|+..+.+++...|.....+    ..+...+..
T Consensus       149 ~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~  224 (334)
T d1dcea1         149 RRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELV----QNAFFTDPN  224 (334)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHH----HHHHHHCSS
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHH----HHHHHhcch
Confidence            4567777889999999999999999999999999999999999999998888888887776554433    334556777


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      +++...+.+++...|.....+..++.++...|++.+|+..+.+++..+|.+..++..+|.++...|++++|+.+|+++++
T Consensus       225 ~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             CSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77888888888888877777777788888888888888888888888888888888888888888888888888888888


Q ss_pred             cCcccHHHHHHHHHHHHH
Q 006562          546 LDRNFLEAWGHLTQFYQD  563 (640)
Q Consensus       546 ~~~~~~~~~~~la~~~~~  563 (640)
                      ++|.....|..++..+..
T Consensus       305 ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         305 VDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HCGGGHHHHHHHHHHHHH
T ss_pred             HCcccHHHHHHHHHHHhH
Confidence            888777777777766654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.3e-20  Score=176.17  Aligned_cols=210  Identities=18%  Similarity=0.086  Sum_probs=177.7

Q ss_pred             cCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          376 SKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       376 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      .++..+.+++.+|.+|...|++++|+..|+++++++|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+
T Consensus        32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l  111 (259)
T d1xnfa_          32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR  111 (259)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHH
Confidence            45566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH----HcC
Q 006562          456 GQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALS----SIG  531 (640)
Q Consensus       456 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~----~~g  531 (640)
                      |.++...|++++|+..|+++++.+|.+......++..+...+....+...........+.....  .+...+.    ..+
T Consensus       112 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  189 (259)
T d1xnfa_         112 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW--NIVEFYLGNISEQT  189 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHH--HHHHHHTTSSCHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhh--hHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888888888887776666666666555544321  1111211    223


Q ss_pred             CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHH
Q 006562          532 EYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKA  587 (640)
Q Consensus       532 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  587 (640)
                      .++.+...+.......|....+++.+|.++...|++++|+.+|++++..+|++...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         190 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence            35555666666666678888899999999999999999999999999999986543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=9.2e-17  Score=158.56  Aligned_cols=226  Identities=16%  Similarity=0.021  Sum_probs=170.9

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPM--------YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----  448 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----  448 (640)
                      ...+..++..+...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+..    
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh
Confidence            334556788888899999999999988864321        23566778999999999999999999998876542    


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc----
Q 006562          449 -GEAWKRRGQARAALGESVEAIQDLSKALEFEPNS-------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN----  516 (640)
Q Consensus       449 -~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~----  516 (640)
                       ..++...+..+...+++..+...+.++....+..       ..++..++.++...|+++.|...+.+++...|.+    
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence             4567778888889999999999998887764332       3456778888889999999999999988776544    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------
Q 006562          517 KSAYTYLGLALSSIGEYKKAEEAHLKAIQL------DRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------  583 (640)
Q Consensus       517 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------  583 (640)
                      ...+..+|.++...|++++|...+++++..      .|....++..+|.+|...|++++|+..+++++.+.+.       
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~  330 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHF  330 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHH
Confidence            456677899999999999999999988743      4556778889999999999999999999999876442       


Q ss_pred             --ChHHHHHHHHHHHhcCCHHHHHH
Q 006562          584 --FSKAYHLRGLLLHGLGQHKKAIK  606 (640)
Q Consensus       584 --~~~~~~~la~~~~~~g~~~~A~~  606 (640)
                        ....+..+...+...++.+++..
T Consensus       331 ~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         331 VIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCChHHHH
Confidence              12233334444455555555544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=2e-17  Score=163.40  Aligned_cols=262  Identities=14%  Similarity=0.052  Sum_probs=216.8

Q ss_pred             cccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc----
Q 006562          378 SISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-----PEALIGRGTARAFQRELEAAISDFTEAIQSNPSA----  448 (640)
Q Consensus       378 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----  448 (640)
                      +..+++...+|.+++..|++++|+..++++++..|.+     ..++..+|.++...|++++|+..|++++...+..    
T Consensus         9 ~~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~   88 (366)
T d1hz4a_           9 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH   88 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             chhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH
Confidence            3446778888999999999999999999999999876     3578889999999999999999999998765432    


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--
Q 006562          449 --GEAWKRRGQARAALGESVEAIQDLSKALEFEPN--------SADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN--  516 (640)
Q Consensus       449 --~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--  516 (640)
                        ..++..++.++...|++..|...+.+++...+.        ....+..+|.++...|+++.+...+.+++...+..  
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_          89 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence              346778899999999999999999999875321        13467788999999999999999999999876543  


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCc-------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--
Q 006562          517 ---KSAYTYLGLALSSIGEYKKAEEAHLKAIQLDR-------NFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRF--  584 (640)
Q Consensus       517 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--  584 (640)
                         ...+...+..+...+++..+...+.++....+       .....+..++.++...|++++|...+++++...+.+  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  248 (366)
T d1hz4a_         169 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH  248 (366)
T ss_dssp             GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccch
Confidence               46677888999999999999999888876532       224567788899999999999999999998776643  


Q ss_pred             --hHHHHHHHHHHHhcCCHHHHHHHHHHhhc------cCCCCHHHHHHHHHHHHHcCCccccc
Q 006562          585 --SKAYHLRGLLLHGLGQHKKAIKDLSSGLG------IDPSNIECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       585 --~~~~~~la~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~Al  639 (640)
                        ...+..+|.++...|++++|...+++++.      ..|....++..+|.+|..+|++++|+
T Consensus       249 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  311 (366)
T d1hz4a_         249 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ  311 (366)
T ss_dssp             GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence              34677789999999999999999999874      34555678899999999999999885

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.1e-16  Score=129.17  Aligned_cols=107  Identities=21%  Similarity=0.223  Sum_probs=98.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 006562           40 RIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSALGR  118 (640)
Q Consensus        40 ~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~g~  118 (640)
                      +-.+..+|..|+|++|+.+|+++|..+ .++.+|+++|.||..+|++++|+..++++++++|+++.+|+.+|.+|..+|+
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            345778899999999999999999999 5566799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHHHhH
Q 006562          119 KEEALSVWEKGYEHALHQSADLKQFLEL  146 (640)
Q Consensus       119 ~~~A~~~~~~al~~~~~~~~~~~~~~~l  146 (640)
                      +++|+.+|++++++.|+.+..+..+..+
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            9999999999999999998777655444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.2e-17  Score=168.83  Aligned_cols=232  Identities=9%  Similarity=0.037  Sum_probs=166.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 006562          399 SAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEF  478 (640)
Q Consensus       399 ~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  478 (640)
                      +|+++|++++++.|+.+.+++.+|.++...|++++|   |++++..+|+....+...+.+.  ...|..+++.++...+.
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999876   8899999987766554333222  22366778888887765


Q ss_pred             CC--CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHH
Q 006562          479 EP--NSAD-ILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWG  555 (640)
Q Consensus       479 ~p--~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  555 (640)
                      ..  +... .....+.+....+.|+.|+..+.+++.++|.+...+..+|.++...|++++|+..+.+++..+|  ..++.
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence            42  2222 2333466667788899999999999999999999999999999999999999999999987765  46788


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCc
Q 006562          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEY  635 (640)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~  635 (640)
                      ++|.++...|++++|+.+|++++.++|+++.+|..+|.++...|++.+|+.+|.+++..+|..+.++.+|+.++.+..+.
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~  236 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES  236 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877655


Q ss_pred             cc
Q 006562          636 RE  637 (640)
Q Consensus       636 ~~  637 (640)
                      .+
T Consensus       237 ~~  238 (497)
T d1ya0a1         237 RD  238 (497)
T ss_dssp             CC
T ss_pred             hh
Confidence            43

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.67  E-value=1.1e-15  Score=129.93  Aligned_cols=114  Identities=20%  Similarity=0.099  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc-----------------hhHHHhHHHHHHhhhcHHHHHHHHHHHHH
Q 006562           35 SAITARIELAKLCSLRNWSKAIRILDSLLAQSYE-----------------IQDICNRAFCYSQLELHKHVIRDCDKALQ   97 (640)
Q Consensus        35 ~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-----------------~~~~~~~A~~~~~~g~~~~Ai~~~~~al~   97 (640)
                      .+.+-+-.+..+|..|+|.+|+..|++||...+.                 ..++.|+|.||+++|+|++|+.+|++||+
T Consensus        16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~   95 (153)
T d2fbna1          16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK   95 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence            3345556778999999999999999999975421                 12368999999999999999999999999


Q ss_pred             cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHH
Q 006562           98 LDPTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (640)
Q Consensus        98 ~~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~  148 (640)
                      ++|+++++|+++|.+|..+|++++|+.+|+++++++|+.+.....+..+..
T Consensus        96 ~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1          96 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999877655544443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.1e-14  Score=140.07  Aligned_cols=223  Identities=8%  Similarity=-0.052  Sum_probs=195.1

Q ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Q 006562          397 YASAISIFDQILKEDPMYPEALIGRGTARAFQ--------------RELEAAISDFTEAIQS-NPSAGEAWKRRGQARAA  461 (640)
Q Consensus       397 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~  461 (640)
                      ...+..+|++++...|.++.+|+..+..+...              +..++|...|+++++. .|.+...|..++.++..
T Consensus        32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~  111 (308)
T d2onda1          32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45577789999999999999998887765433              3468899999999975 68888899999999999


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHH
Q 006562          462 LGESVEAIQDLSKALEFEPNSA-DILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS-IGEYKKAEEA  539 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~g~~~~A~~~  539 (640)
                      .|+++.|...|++++...|.+. .+|..++.+....|+++.|...|.+++...|.+...+...+..... .|+.+.|...
T Consensus       112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i  191 (308)
T d2onda1         112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  191 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHH
Confidence            9999999999999999998774 4788999999999999999999999999999999999988887554 6899999999


Q ss_pred             HHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHhcCCHHHHHHHHHHhhccC
Q 006562          540 HLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS----KAYHLRGLLLHGLGQHKKAIKDLSSGLGID  615 (640)
Q Consensus       540 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~  615 (640)
                      |++++..+|.++..|..++..+...|+++.|..+|++++...|.++    ..|..........|+.+.+...++++.+..
T Consensus       192 ~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~  271 (308)
T d2onda1         192 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999877543    477788888888999999999999999888


Q ss_pred             CCCH
Q 006562          616 PSNI  619 (640)
Q Consensus       616 p~~~  619 (640)
                      |...
T Consensus       272 ~~~~  275 (308)
T d2onda1         272 REEY  275 (308)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            8654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.9e-15  Score=142.81  Aligned_cols=201  Identities=17%  Similarity=0.142  Sum_probs=131.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 006562          422 GTARAFQRELEAAISDFTEAIQSNP------SAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNS------ADILHER  489 (640)
Q Consensus       422 a~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l  489 (640)
                      |.+|...|+|++|+..|.++++..+      .....+..+|.+|...|++++|+..+++++.+.+..      ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            5666666677777777776665421      123466677777777777777777777777664433      3456666


Q ss_pred             HHHHHh-cCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc-------HHHHH
Q 006562          490 GIVNFK-FKDFNAAVEDLSACVKLDKE------NKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF-------LEAWG  555 (640)
Q Consensus       490 a~~~~~-~~~~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-------~~~~~  555 (640)
                      |.++.. .|++++|+.+|++++.+.+.      ...++..+|.++..+|++++|+..|++++...+..       ...+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            766644 57788888888777765322      13456777888888888888888888887776554       24556


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHh--cCCHHHHHHHHHHhhccCCCCHHHH
Q 006562          556 HLTQFYQDLANSEKALECLQQVLYIDKRFSK-----AYHLRGLLLHG--LGQHKKAIKDLSSGLGIDPSNIECL  622 (640)
Q Consensus       556 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~  622 (640)
                      ..+.++...|+++.|...++++++.+|..+.     ....+..++..  .+.+++|+..|+++.+++|.....+
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~~~~~L  277 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL  277 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            7777788888888888888888887775433     23344444443  3468889998888887776433333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.2e-15  Score=120.38  Aligned_cols=112  Identities=19%  Similarity=0.248  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 006562          382 DFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA  461 (640)
Q Consensus       382 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  461 (640)
                      .-+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..+.++++.+|+++.+|+.+|.++..
T Consensus         4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            34556788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          462 LGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       462 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                      +|++++|+..|+++++.+|+++.++..++.+.
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            88888888888888888888888887777654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.8e-15  Score=128.64  Aligned_cols=110  Identities=17%  Similarity=0.270  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc
Q 006562           38 TARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCAFSAL  116 (640)
Q Consensus        38 ~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~y~~~  116 (640)
                      +-+..+..+|+.|+|++|+.+|+++|+++ .++..|+++|.||+.+|++++|+..|+++|+++|+++.+++.+|.+|..+
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            34466778999999999999999999999 55566999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHHHHHHHhHH
Q 006562          117 GRKEEALSVWEKGYEHALHQSADLKQFLELE  147 (640)
Q Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~  147 (640)
                      |++++|+.+|++++.+.|..+.....+..+.
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            9999999999999999999988765554443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.2e-16  Score=140.11  Aligned_cols=104  Identities=22%  Similarity=0.336  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 006562           34 ASAITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQAYILKGCA  112 (640)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~a~~~~g~~  112 (640)
                      |++..-+-.+..+|..|+|++|+.+|++||+++ .++.+|+++|.||.++|+|++|+..|++||+++|+++.+|+.+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            334445556778899999999999999999999 5567799999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhccCCh
Q 006562          113 FSALGRKEEALSVWEKGYEHALHQS  137 (640)
Q Consensus       113 y~~~g~~~~A~~~~~~al~~~~~~~  137 (640)
                      |..+|++++|+..|++|+++.|...
T Consensus        82 ~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999988877554

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.8e-15  Score=127.30  Aligned_cols=113  Identities=18%  Similarity=0.151  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHcccCch----------------hHHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562           36 AITARIELAKLCSLRNWSKAIRILDSLLAQSYEI----------------QDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (640)
Q Consensus        36 ~~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~~----------------~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~   99 (640)
                      +..-+..+..+|..|+|++|+.+|++||...+..                ..|.|+|.||+++|+|++|+..++++|.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            3444456678899999999999999999875321                236799999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHH
Q 006562          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEE  148 (640)
Q Consensus       100 P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~  148 (640)
                      |+++.+++++|.+|..+|++++|+.+|+++++++|+.+.....+..+..
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887766555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.7e-14  Score=126.18  Aligned_cols=131  Identities=18%  Similarity=0.231  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      .++..|..+...|+|++|++.|.++   .|.++.+++++|.+|..+|++++|+..|+++++++|+++.+|..+|.++..+
T Consensus         7 ~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~   83 (192)
T d1hh8a_           7 SLWNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT   83 (192)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhh
Confidence            4557799999999999999999864   5667889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q 006562          463 GESVEAIQDLSKALEFEPNS----------------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKEN  516 (640)
Q Consensus       463 ~~~~~A~~~~~~al~~~p~~----------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~  516 (640)
                      |++++|+..|++++...+.+                ..+++.+|.++...|++++|++.+.+++.+.|..
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            99999999999998875543                2456677777777777777777777777766653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.1e-14  Score=123.04  Aligned_cols=124  Identities=21%  Similarity=0.229  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+...|..++..|+|++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|++..++..+|.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            44566788888888889999999988888888888888888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNF--KFKDFNAAVE  504 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~~~~~~A~~  504 (640)
                      .+|++++|+..+++++.+.|.++.++..++.+..  ..+.+++|+.
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888888777766543  3333444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-14  Score=126.47  Aligned_cols=129  Identities=18%  Similarity=0.143  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 006562          452 WKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG  531 (640)
Q Consensus       452 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  531 (640)
                      ++..|..+...|+|++|+..|.+   +.|.++.+++.+|.++..+|++++|+..|+++++++|+++.+|+.+|.++..+|
T Consensus         8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_           8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc
Confidence            34568888888888888887765   355567778888888888888888888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHccCccc----------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Q 006562          532 EYKKAEEAHLKAIQLDRNF----------------LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR  583 (640)
Q Consensus       532 ~~~~A~~~~~~a~~~~~~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  583 (640)
                      ++++|+..|++++...+.+                ..+++++|.++...|++++|++.+.+++...|.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            8888888888887654322                356667777777777777777777777776665

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.4e-14  Score=125.48  Aligned_cols=113  Identities=19%  Similarity=0.254  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHccc-----------------CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcC
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-----------------YEIQDICNRAFCYSQLELHKHVIRDCDKALQLD   99 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-----------------~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~   99 (640)
                      ...+.....+|..|+|.+|+..|+++|...                 .....+.++|.||.++|+|++|+..|++||+++
T Consensus        28 ~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~  107 (169)
T d1ihga1          28 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  107 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh
Confidence            334556677899999999999999998642                 122347899999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHH
Q 006562          100 PTLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (640)
Q Consensus       100 P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~  149 (640)
                      |+++++|+++|.+|..+|++++|+.+|++|+++.|..+.....+..+...
T Consensus       108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998776666555443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.59  E-value=1.3e-14  Score=125.39  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc----------------hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCC
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYE----------------IQDICNRAFCYSQLELHKHVIRDCDKALQLDP  100 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~----------------~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P  100 (640)
                      .+-+-.+..+|+.|+|.+|+.+|++||...+.                ...|.|+|.||+++|+|++|+.+|+++|+++|
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p   95 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS   95 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence            44556677889999999999999999964311                12267999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHHHHHHHhHHHH
Q 006562          101 TLLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSADLKQFLELEEL  149 (640)
Q Consensus       101 ~~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~l~~~  149 (640)
                      +++++++++|.+|..+|++++|+.+|+++++++|+.+.....+..+...
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK  144 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998877666555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.7e-14  Score=137.31  Aligned_cols=202  Identities=13%  Similarity=0.042  Sum_probs=161.5

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKED------PMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSA------  448 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------  448 (640)
                      ++.+...|.+|...|+|++|+..|.++++..      +....++..+|.+|...|++++|+..+++++.+.+..      
T Consensus        37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  116 (290)
T d1qqea_          37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhH
Confidence            5678888999999999999999999999863      2235688999999999999999999999999876543      


Q ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH----
Q 006562          449 GEAWKRRGQARAA-LGESVEAIQDLSKALEFEPNS------ADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK----  517 (640)
Q Consensus       449 ~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----  517 (640)
                      ..++..+|.++.. .|++++|+..|++++.+.+..      ..++..+|.++...|+|++|+..|++++...+...    
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~  196 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW  196 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence            4577888988865 699999999999999874432      45688899999999999999999999999887653    


Q ss_pred             ---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHH-----HHHHHHHHHH--hcCHHHHHHHHHHHHHhCC
Q 006562          518 ---SAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEA-----WGHLTQFYQD--LANSEKALECLQQVLYIDK  582 (640)
Q Consensus       518 ---~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-----~~~la~~~~~--~g~~~~A~~~~~~al~~~~  582 (640)
                         ..+...+.++...|++..|...+++++..+|..+..     ...+..++..  .+.+++|+..|.++.+++|
T Consensus       197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence               456788999999999999999999999998875443     2344444433  3458999999987776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.4e-13  Score=130.53  Aligned_cols=217  Identities=9%  Similarity=-0.035  Sum_probs=191.0

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHH
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNE--------------GKYASAISIFDQILKE-DPMYPEALIGRGTARAFQRELEA  433 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~--------------g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~  433 (640)
                      .+++++...|.++.+|+..+..+...              +..++|..+|+++++. .|.+...|...+.+....|+++.
T Consensus        38 vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~  117 (308)
T d2onda1          38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK  117 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHH
Confidence            46677777888888888877655433              3457899999999975 78889999999999999999999


Q ss_pred             HHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 006562          434 AISDFTEAIQSNPSAG-EAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNF-KFKDFNAAVEDLSACVK  511 (640)
Q Consensus       434 A~~~~~~al~~~p~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~  511 (640)
                      |...|++++...|.+. .+|..++......|+++.|...|.+++...|.....+...+.... ..|+.+.|...|++++.
T Consensus       118 a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~  197 (308)
T d2onda1         118 VHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK  197 (308)
T ss_dssp             HHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            9999999999999764 578899999999999999999999999999999999998888754 46899999999999999


Q ss_pred             hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Q 006562          512 LDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNF----LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (640)
Q Consensus       512 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  585 (640)
                      .+|.++..|..++..+...|+++.|..+|++++...|.+    ...|..........|+.+.+..+++++.+..|...
T Consensus       198 ~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         198 KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            999999999999999999999999999999999977644    45788888888889999999999999999888654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.9e-14  Score=116.75  Aligned_cols=99  Identities=14%  Similarity=0.185  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCCchH-------HHHH
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQLELHKHVIRDCDKALQLDPTLLQ-------AYIL  108 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~~~~-------a~~~  108 (640)
                      ...+-.+..+|..|+|++|+.+|+++|+++ .++.++.++|.||.++|+|++|+.+|+++|+++|++..       +|++
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            445566778999999999999999999999 55677999999999999999999999999999998754       7788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhccC
Q 006562          109 KGCAFSALGRKEEALSVWEKGYEHALH  135 (640)
Q Consensus       109 ~g~~y~~~g~~~~A~~~~~~al~~~~~  135 (640)
                      +|.++..++++++|+..|++++...|.
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            889999999999999999999988764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.9e-15  Score=153.00  Aligned_cols=222  Identities=14%  Similarity=0.060  Sum_probs=131.6

Q ss_pred             HHhhhhccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--
Q 006562          369 CVTRISKSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNP--  446 (640)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--  446 (640)
                      .+.++....|..++.++.+|.++...|++.+|   |++++..+|+....+...+.++  ...|..+++.+++..+...  
T Consensus         8 ~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k~~~~~   82 (497)
T d1ya0a1           8 YLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLW--NHAFKNQITTLQGQAKNRANP   82 (497)
T ss_dssp             HHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHH--HHHTHHHHHHHHHHHSCSSCT
T ss_pred             HHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHH--HHHHHHHHHHHHHhcccccCc
Confidence            34455555666677777788888888888766   7788887776555543322222  2235566677776665432  


Q ss_pred             CcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 006562          447 SAGE-AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGL  525 (640)
Q Consensus       447 ~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~  525 (640)
                      +... ....++.++...+.|+.|+..+.+++.++|.+...+..+|..+...|+++.|...+.+++..+|  ..++..+|.
T Consensus        83 ~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~  160 (497)
T d1ya0a1          83 NRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGD  160 (497)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHH
Confidence            2111 2223455556677777888777777777777777788888888888888888888877777655  356777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Q 006562          526 ALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG  597 (640)
Q Consensus       526 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  597 (640)
                      ++...|++++|+.+|.+++.++|+++.+|+.+|.++...|++.+|+.+|.+++...|..+.++.+++.++.+
T Consensus       161 l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         161 IARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888777777777776654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.3e-14  Score=128.52  Aligned_cols=104  Identities=18%  Similarity=0.208  Sum_probs=87.7

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQAR  459 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  459 (640)
                      ++..+...|..++..|+|++|+..|++++..+|.++.+|..+|.+|...|++++|+..|+++++++|+++.+|+.+|.+|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45567778888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH
Q 006562          460 AALGESVEAIQDLSKALEFEPNSA  483 (640)
Q Consensus       460 ~~~~~~~~A~~~~~~al~~~p~~~  483 (640)
                      ..+|++++|+..|++++.+.|.+.
T Consensus        83 ~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          83 LEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccH
Confidence            888888888888888888776543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.47  E-value=1.8e-11  Score=114.55  Aligned_cols=226  Identities=17%  Similarity=0.143  Sum_probs=188.7

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAF----QRELEAAISDFTEAIQSNPSAGEAWKRR  455 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~l  455 (640)
                      +|..++.+|..++..+++.+|+++|+++.+.  .++.+++.+|.+|..    ..++..|..++..+...  .++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence            4788999999999999999999999999775  578999999999987    67999999999998765  467788888


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 006562          456 GQARAA----LGESVEAIQDLSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLAL  527 (640)
Q Consensus       456 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~  527 (640)
                      |.++..    ..+...|...++.+....+  ..+...++..+..    ......|...+.+...  +.+...+..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence            888765    4688999999999988654  5566677777664    4467778888877655  46678899999999


Q ss_pred             HH----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh--
Q 006562          528 SS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG--  597 (640)
Q Consensus       528 ~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~--  597 (640)
                      ..    ..+...+..+++.+.+  +.++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+++.+|.+|..  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred             ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence            87    5677888888888875  4578999999999987    67899999999999876  468999999999986  


Q ss_pred             --cCCHHHHHHHHHHhhccCCC
Q 006562          598 --LGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       598 --~g~~~~A~~~~~~al~~~p~  617 (640)
                        ..++++|+.+|+++....+.
T Consensus       229 g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHTCH
T ss_pred             CCccCHHHHHHHHHHHHHCcCH
Confidence              45899999999999887654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2e-12  Score=111.49  Aligned_cols=135  Identities=22%  Similarity=0.223  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+...|..++..|+|++|+..|++++...|..........          .....         ....++..+|.+|.
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~----------~~~~~---------~~~~~~~nla~~y~   73 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA----------QKAQA---------LRLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH----------HHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH----------hhhch---------hHHHHHHHHHHHHH
Confidence            555667899999999999999999999988765421100000          00000         00123445566666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYK  534 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~  534 (640)
                      ..|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|+++.+...++.+....+...
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~  147 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQL  147 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666665555444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.2e-13  Score=108.49  Aligned_cols=104  Identities=13%  Similarity=0.016  Sum_probs=90.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHccc-CchhHHHhHHHHHHh---hhcHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHc
Q 006562           43 LAKLCSLRNWSKAIRILDSLLAQS-YEIQDICNRAFCYSQ---LELHKHVIRDCDKALQLDPTL--LQAYILKGCAFSAL  116 (640)
Q Consensus        43 ~~~~~~~~~y~~Ai~~y~~ai~~~-~~~~~~~~~A~~~~~---~g~~~~Ai~~~~~al~~~P~~--~~a~~~~g~~y~~~  116 (640)
                      +..++..++|++|.+.|.+++.++ .++.+++|.|.|+++   .+++++|+..+++++..+|+.  +++++.+|.+|..+
T Consensus         6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_           6 LNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            446788999999999999999999 566889999999986   677889999999999999866  55999999999999


Q ss_pred             CCHHHHHHHHHHHHhhccCChHHHHHHHhH
Q 006562          117 GRKEEALSVWEKGYEHALHQSADLKQFLEL  146 (640)
Q Consensus       117 g~~~~A~~~~~~al~~~~~~~~~~~~~~~l  146 (640)
                      |++++|+.+|++++++.|+.+.+..-...+
T Consensus        86 g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          86 KEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            999999999999999999998765444333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.44  E-value=6.6e-13  Score=105.51  Aligned_cols=94  Identities=17%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAAL  462 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  462 (640)
                      ..+..|..++..|++.+|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHHHH
Q 006562          463 GESVEAIQDLSKAL  476 (640)
Q Consensus       463 ~~~~~A~~~~~~al  476 (640)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888888888765

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.41  E-value=1.4e-12  Score=103.61  Aligned_cols=92  Identities=23%  Similarity=0.268  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q 006562          418 LIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFK  497 (640)
Q Consensus       418 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~  497 (640)
                      ++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|+++++++|.+..++..+|.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            34455555555666666666666655555555555555555555555655655555555555555555555555555555


Q ss_pred             CHHHHHHHHHHH
Q 006562          498 DFNAAVEDLSAC  509 (640)
Q Consensus       498 ~~~~A~~~~~~a  509 (640)
                      ++++|++.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            555555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.8e-13  Score=107.43  Aligned_cols=107  Identities=14%  Similarity=-0.012  Sum_probs=57.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCccc--HHHHHHHHHHHHH
Q 006562          489 RGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIG---EYKKAEEAHLKAIQLDRNF--LEAWGHLTQFYQD  563 (640)
Q Consensus       489 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~a~~~~~~~--~~~~~~la~~~~~  563 (640)
                      ++..+...+++++|.+.|++++..+|.++.+++++|.++...+   ++++|+..|++++..+|..  ..+++++|.+|..
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555422   3334555555555554433  3355555555555


Q ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 006562          564 LANSEKALECLQQVLYIDKRFSKAYHLRGLLL  595 (640)
Q Consensus       564 ~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~  595 (640)
                      +|++++|+.+|+++++++|++..+...++.+.
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            55555555555555555555555555544443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.40  E-value=1.6e-12  Score=112.30  Aligned_cols=133  Identities=17%  Similarity=0.191  Sum_probs=95.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhc
Q 006562          486 LHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLA  565 (640)
Q Consensus       486 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  565 (640)
                      +...|..++..|++.+|+..|.+++...+..                  .+...........|....++.++|.++..+|
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~   91 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS------------------RAAAEDADGAKLQPVALSCVLNIGACKLKMS   91 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhh------------------hhhhhhHHHHHhChhhHHHHHHHHHHHHhhc
Confidence            3455666777777777777777776542211                  1111222334455666777888888888888


Q ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHcCCcc
Q 006562          566 NSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHAIGEYR  636 (640)
Q Consensus       566 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  636 (640)
                      ++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..+...++.+........
T Consensus        92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~  162 (169)
T d1ihga1          92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK  162 (169)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888877776655443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.40  E-value=4.4e-12  Score=107.08  Aligned_cols=132  Identities=17%  Similarity=0.115  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+...|..++..|+|.+|+..|.+++...+......             +.........+     ...++.++|.+|.
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-------------~~~~~~~~~~~-----~~~~~~Nla~~~~   78 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-------------DQILLDKKKNI-----EISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-------------CHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-------------hHHHHHhhhhH-----HHHHHhhHHHHHH
Confidence            44566789999999999999999999998765431100             00000000000     1124556666666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSI  530 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  530 (640)
                      .+|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..+...++.+..++
T Consensus        79 ~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            6667777777777766666666666666777777777777777777777776666666666666655443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.39  E-value=5.5e-13  Score=113.41  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHcccCc-------------hhHHHhHHHHHHhhhcHHHHHHHHHHHHHcCCC--
Q 006562           37 ITARIELAKLCSLRNWSKAIRILDSLLAQSYE-------------IQDICNRAFCYSQLELHKHVIRDCDKALQLDPT--  101 (640)
Q Consensus        37 ~~~~~~~~~~~~~~~y~~Ai~~y~~ai~~~~~-------------~~~~~~~A~~~~~~g~~~~Ai~~~~~al~~~P~--  101 (640)
                      ......+..+|..|+|++|+..|++||++.++             ..+|.|+|.||..+|+|++|+..++++|.+.|.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            34445566789999999999999999998732             245889999999999999999999999987643  


Q ss_pred             ---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 006562          102 ---------LLQAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (640)
Q Consensus       102 ---------~~~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~  139 (640)
                               ...+++++|.+|..+|++++|+.+|++|+++.|+....
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence                     34589999999999999999999999999887765443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.39  E-value=8.9e-12  Score=107.15  Aligned_cols=134  Identities=19%  Similarity=0.184  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          381 VDFRLSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       381 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      +..+...|..++..|+|.+|+..|.+++...|.......          .......         +....++..+|.+|.
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~----------~~~~~~~---------~~~~~~~~Nla~~~~   75 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE----------KESKASE---------SFLLAAFLNLAMCYL   75 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH----------HHHHHHH---------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch----------hhhhhcc---------hhHHHHHHhHHHHHH
Confidence            556778899999999999999999999876443210000          0000000         001224445566666


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEY  533 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  533 (640)
                      .+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|.+++.++|+++.+...++.+....+.+
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            6666666666666666666666666666666666666666666666666666666666665555555554433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=99.33  E-value=2.6e-10  Score=106.34  Aligned_cols=214  Identities=18%  Similarity=0.149  Sum_probs=175.5

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 006562          414 YPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQDLSKALEFEPNSADILHER  489 (640)
Q Consensus       414 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~l  489 (640)
                      +|.+++.+|..++..+++.+|+.+|+++.+.  .+..+++.+|.+|..    ..++..|..++..+....  ++.+...+
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l   76 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   76 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhcc
Confidence            5889999999999999999999999999875  578999999999997    679999999999987654  67788888


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCcccHHHHHHHHHHH
Q 006562          490 GIVNFK----FKDFNAAVEDLSACVKLDKENKSAYTYLGLALSS----IGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFY  561 (640)
Q Consensus       490 a~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  561 (640)
                      |.++..    ..+.+.|...++.+....+  ..+...++..+..    ......|...+.+...  +.+...+..+|.++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~~~~  152 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhhhhh
Confidence            888765    4688999999999987654  5666667777665    4567778888877655  45678889999999


Q ss_pred             HH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH--
Q 006562          562 QD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHKKAIKDLSSGLGIDPSNIECLYLRASCYHA--  631 (640)
Q Consensus       562 ~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--  631 (640)
                      ..    ..+...+..+++.+.+  +.++.+.+.+|.++..    ..++++|+.+|+++.+.  +++.+++.||.+|..  
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTS
T ss_pred             ccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCC
Confidence            86    4567788888888764  4678999999999987    67999999999999887  468999999999985  


Q ss_pred             --cCCccccc
Q 006562          632 --IGEYREAV  639 (640)
Q Consensus       632 --~g~~~~Al  639 (640)
                        ..++++|+
T Consensus       229 g~~~n~~~A~  238 (265)
T d1ouva_         229 GVTRNEKQAI  238 (265)
T ss_dssp             SSSCCSTTHH
T ss_pred             CCccCHHHHH
Confidence              33566554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=5.7e-12  Score=105.01  Aligned_cols=111  Identities=16%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006562          392 VNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQD  471 (640)
Q Consensus       392 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~  471 (640)
                      -+.+.|++|+..|+++++.+|+++.+++.+|.++...+++..+.+                        ..+.+++|+..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e------------------------~~~~~~~Ai~~   63 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD------------------------AKQMIQEAITK   63 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH------------------------HHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH------------------------HHHHHHHHHHH
Confidence            344556666666666666666666666666666654433322111                        11223444444


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 006562          472 LSKALEFEPNSADILHERGIVNFKFK-----------DFNAAVEDLSACVKLDKENKSAYTYLGLA  526 (640)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~la~~  526 (640)
                      |+++++++|+++.+++.+|.+|..+|           .+++|..+|+++++++|++..++..++.+
T Consensus        64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~  129 (145)
T d1zu2a1          64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT  129 (145)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH
Confidence            45555555544444444444444433           23445555555555555555544444444

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.32  E-value=5.9e-12  Score=104.95  Aligned_cols=107  Identities=21%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             hhHHHHHhhhhccCcccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH
Q 006562          364 RNKKFCVTRISKSKSISVDFRLSRGIAQVNEGK----------YASAISIFDQILKEDPMYPEALIGRGTARAFQRELEA  433 (640)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~----------~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~  433 (640)
                      ......++.+...+|.++++++.+|.++...++          +++|+..|+++++++|+++.+++.+|.+|...|++. 
T Consensus        14 e~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~-   92 (145)
T d1zu2a1          14 EQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT-   92 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccch-
Confidence            455567888899999999999999999986544          466777777777777777777777777776654310 


Q ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 006562          434 AISDFTEAIQSNPSAGEAWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHERGIVN  493 (640)
Q Consensus       434 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  493 (640)
                                  +.          .....+.+.+|+.+|++++.++|++...+..++.+.
T Consensus        93 ------------~~----------~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          93 ------------PD----------ETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             ------------CC----------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ------------hh----------HHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence                        00          000112345566666666666666665555555543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.3e-11  Score=100.51  Aligned_cols=96  Identities=19%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-------HHHHHHHHH
Q 006562          522 YLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS-------KAYHLRGLL  594 (640)
Q Consensus       522 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~la~~  594 (640)
                      .+|..++..|+|++|+.+|.+++.++|+++.++.++|.+|..+|++++|+..++++++++|.++       .++..+|.+
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444445554444555555555544444444332       233445555


Q ss_pred             HHhcCCHHHHHHHHHHhhccCCC
Q 006562          595 LHGLGQHKKAIKDLSSGLGIDPS  617 (640)
Q Consensus       595 ~~~~g~~~~A~~~~~~al~~~p~  617 (640)
                      +..++++++|+.+|++++..+|+
T Consensus        89 ~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCC
Confidence            55666666666666666655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7e-10  Score=84.39  Aligned_cols=82  Identities=13%  Similarity=-0.061  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCCHHHHH
Q 006562          551 LEAWGHLTQFYQDLANSEKALECLQQVLYIDKR-------FSKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSNIECLY  623 (640)
Q Consensus       551 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  623 (640)
                      ++.++.+|.++...|++++|+.+|+++++..|.       ...++..+|.++.+.|++++|+.+|+++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            344556666666666666666666666655432       2456666777777777777777777777777777777777


Q ss_pred             HHHHHHHHc
Q 006562          624 LRASCYHAI  632 (640)
Q Consensus       624 ~la~~~~~~  632 (640)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            766655443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=8.8e-10  Score=83.83  Aligned_cols=81  Identities=15%  Similarity=0.025  Sum_probs=56.4

Q ss_pred             cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHH
Q 006562          380 SVDFRLSRGIAQVNEGKYASAISIFDQILKEDPMY-------PEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAW  452 (640)
Q Consensus       380 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  452 (640)
                      +++-++.+|..++..|+|.+|+.+|+++++..|.+       ..++..+|.++...|++++|+.+++++++++|+++.++
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            35566777777777777777777777777664432       45677777777777777777777777777777777777


Q ss_pred             HHHHHHHH
Q 006562          453 KRRGQARA  460 (640)
Q Consensus       453 ~~la~~~~  460 (640)
                      ..++.+..
T Consensus        84 ~Nl~~~~~   91 (95)
T d1tjca_          84 GNLKYFEY   91 (95)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66655443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=3.6e-09  Score=90.85  Aligned_cols=89  Identities=13%  Similarity=0.030  Sum_probs=80.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHcccCch-----------------------hHHHhHHHHHHhhhcHHHHHHHHHHHHHc
Q 006562           42 ELAKLCSLRNWSKAIRILDSLLAQSYEI-----------------------QDICNRAFCYSQLELHKHVIRDCDKALQL   98 (640)
Q Consensus        42 ~~~~~~~~~~y~~Ai~~y~~ai~~~~~~-----------------------~~~~~~A~~~~~~g~~~~Ai~~~~~al~~   98 (640)
                      .+..++..|++++|+..|.+|+.+.++.                       .++.+++.++..+|++++|+..+++++..
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~   96 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFE   96 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            3447789999999999999999986322                       12478999999999999999999999999


Q ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006562           99 DPTLLQAYILKGCAFSALGRKEEALSVWEKGY  130 (640)
Q Consensus        99 ~P~~~~a~~~~g~~y~~~g~~~~A~~~~~~al  130 (640)
                      +|.+..+|..++.+|..+|++.+|+..|+++.
T Consensus        97 ~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          97 HPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999999999999999999999999983

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.96  E-value=1.1e-09  Score=92.51  Aligned_cols=98  Identities=21%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---
Q 006562          383 FRLSRGIAQVNEGKYASAISIFDQILKEDPMY------------PEALIGRGTARAFQRELEAAISDFTEAIQSNPS---  447 (640)
Q Consensus       383 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---  447 (640)
                      .++..|..++..|+|++|+..|++++++.|..            ..++.++|.+|..+|++++|+..+++++...|.   
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccc
Confidence            34455778888888888888888888877653            346677777777777777777777777765432   


Q ss_pred             --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 006562          448 --------AGEAWKRRGQARAALGESVEAIQDLSKALEFEP  480 (640)
Q Consensus       448 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  480 (640)
                              ...+++.+|.+|..+|++++|+..|++++++.|
T Consensus        91 ~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          91 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                    123556667777777777777777777766644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.87  E-value=3.4e-09  Score=97.17  Aligned_cols=127  Identities=17%  Similarity=0.034  Sum_probs=73.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006562          459 RAALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       459 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      .+..|++++|+..++++++.+|.+...+..++.+++..|++++|+..|+++++++|+....+..++.++...+..+++..
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~   85 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ   85 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence            34456666666666666666666666666666666666666666666666666666666666666666555444444433


Q ss_pred             HHHHHHc-cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Q 006562          539 AHLKAIQ-LDRNFLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFS  585 (640)
Q Consensus       539 ~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  585 (640)
                      .+..... ..|.....+...+.++...|++++|...+.++.+..|..+
T Consensus        86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            3222111 1344444555556666666666666666666666665443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.86  E-value=2.5e-09  Score=98.05  Aligned_cols=130  Identities=13%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 006562          388 GIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESVE  467 (640)
Q Consensus       388 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  467 (640)
                      +...+..|++++|+..++++++.+|+++.++..++.++...|++++|+..++++++.+|++..++..++.++...+...+
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHH
Confidence            34566778888888888888888888888888888888888888888888888888888888888888877776666655


Q ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q 006562          468 AIQDLSKALEF-EPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENK  517 (640)
Q Consensus       468 A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~  517 (640)
                      +...+.+.... .|.....+...+..+...|++++|...+.++.+..|..+
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~  133 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  133 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            54433332222 333445566667777788888888888888888777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.65  E-value=8.9e-08  Score=81.91  Aligned_cols=62  Identities=5%  Similarity=-0.116  Sum_probs=39.3

Q ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006562          550 FLEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSG  611 (640)
Q Consensus       550 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  611 (640)
                      ...++..++.++...|++++|+..+++++..+|.+..+|..++.++...|++.+|+..|+++
T Consensus        66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          66 KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34555666666666666666666666666666666666666666666666666666666655

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=2.7e-05  Score=59.77  Aligned_cols=80  Identities=11%  Similarity=0.037  Sum_probs=63.6

Q ss_pred             ccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHH
Q 006562          379 ISVDFRLSRGIAQVNEG---KYASAISIFDQILKEDPMYP-EALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKR  454 (640)
Q Consensus       379 ~~~~~~~~~a~~~~~~g---~~~~A~~~~~~~l~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  454 (640)
                      ..+...|..|.++....   +..+|+.+++.+++.+|.+. ++++.+|..|+..|+|++|..+++++++++|++..+...
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            34677888888887654   45688899999988888664 788899999999999999999999999999988877655


Q ss_pred             HHHH
Q 006562          455 RGQA  458 (640)
Q Consensus       455 la~~  458 (640)
                      .-.+
T Consensus       113 ~~~I  116 (124)
T d2pqrb1         113 KSMV  116 (124)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=3.1e-05  Score=59.39  Aligned_cols=73  Identities=12%  Similarity=0.017  Sum_probs=49.0

Q ss_pred             CchhHHHhHHHHHHhh---hcHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhccCChHH
Q 006562           67 YEIQDICNRAFCYSQL---ELHKHVIRDCDKALQLDPTLL-QAYILKGCAFSALGRKEEALSVWEKGYEHALHQSAD  139 (640)
Q Consensus        67 ~~~~~~~~~A~~~~~~---g~~~~Ai~~~~~al~~~P~~~-~a~~~~g~~y~~~g~~~~A~~~~~~al~~~~~~~~~  139 (640)
                      +.....++-|-|+.+.   .+.+++|..++.++..+|... ++++.+|.+|.++|+|++|..+++++|++.|+...+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA  109 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  109 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence            4445566666666643   455677777777777777553 677777777777777777777777777777766544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=8.4e-05  Score=59.50  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=50.1

Q ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHH
Q 006562          396 KYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAA----LGESVEAIQD  471 (640)
Q Consensus       396 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~  471 (640)
                      |+++|+.+|+++.+..  ++.+.+.++.  ....++++|+.+++++.+.  .++.+.+.+|.+|..    ..++.+|+.+
T Consensus         8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~   81 (133)
T d1klxa_           8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence            4555666666555443  2333333432  1233455555555555442  344455555555443    2344455555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 006562          472 LSKALEFEPNSADILHERGIVNFK----FKDFNAAVEDLSACVKL  512 (640)
Q Consensus       472 ~~~al~~~p~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~  512 (640)
                      |+++.+.  .++.+.+.+|.+|..    ..+..+|+.+|+++.+.
T Consensus        82 ~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~  124 (133)
T d1klxa_          82 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             Hhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence            5554443  234444444444443    23444444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=6.8e-05  Score=60.06  Aligned_cols=80  Identities=18%  Similarity=0.149  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh----cCCHH
Q 006562          531 GEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQD----LANSEKALECLQQVLYIDKRFSKAYHLRGLLLHG----LGQHK  602 (640)
Q Consensus       531 g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~----~g~~~  602 (640)
                      .++++|+.+++++.+.  .++.+.+.+|.+|..    ..++++|+.+|+++.+.  .++.+.+.+|.+|..    ..++.
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            3445555555554432  234455555555543    23455555555555443  345555555555554    34555


Q ss_pred             HHHHHHHHhhcc
Q 006562          603 KAIKDLSSGLGI  614 (640)
Q Consensus       603 ~A~~~~~~al~~  614 (640)
                      +|+.+|+++.+.
T Consensus       113 ~A~~~~~~Aa~~  124 (133)
T d1klxa_         113 QAVKTFEKACRL  124 (133)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHC
Confidence            566665555544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.19  Score=48.64  Aligned_cols=262  Identities=10%  Similarity=-0.071  Sum_probs=168.7

Q ss_pred             ccCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHH
Q 006562          375 KSKSISVDFRLSRGIAQVNEGKYASAISIFDQILKEDPM------------------YPEALIGRGTARAFQRELEAAIS  436 (640)
Q Consensus       375 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~~~------------------~~~~~~~la~~~~~~g~~~~A~~  436 (640)
                      ...|.+.......+.+....|+...|...+..+......                  .+..+..........|++..|..
T Consensus        96 ~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~  175 (450)
T d1qsaa1          96 PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTV  175 (450)
T ss_dssp             CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHH
Confidence            455667777777788888888888888777766543322                  23333444555555666665555


Q ss_pred             HHHHH-------------HHhCC-----------CcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-
Q 006562          437 DFTEA-------------IQSNP-----------SAGE--AWKRRGQARAALGESVEAIQDLSKALEFEPNSADILHER-  489 (640)
Q Consensus       437 ~~~~a-------------l~~~p-----------~~~~--~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l-  489 (640)
                      .+..+             +..+|           .+..  .....+..-....+.+.|...+.......+.....+... 
T Consensus       176 l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~  255 (450)
T d1qsaa1         176 LAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELR  255 (450)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHH
Confidence            44321             11122           2211  122233344445678888888888777666554433332 


Q ss_pred             ---HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHhcC
Q 006562          490 ---GIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQLDRNFLEAWGHLTQFYQDLAN  566 (640)
Q Consensus       490 ---a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  566 (640)
                         +..+...+..+.+...+........+.... ..++......+++..+...+..........+...+.+|..+...|+
T Consensus       256 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~  334 (450)
T d1qsaa1         256 DIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLI-ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR  334 (450)
T ss_dssp             HHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHH-HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCchHHHHHHHHhhcccccchHHH-HHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCC
Confidence               333344566788888887776655444433 3344445667899998888876544434457788999999999999


Q ss_pred             HHHHHHHHHHHHHhCC-------------------------CC---hHHHHHHHHHHHhcCCHHHHHHHHHHhhccCCCC
Q 006562          567 SEKALECLQQVLYIDK-------------------------RF---SKAYHLRGLLLHGLGQHKKAIKDLSSGLGIDPSN  618 (640)
Q Consensus       567 ~~~A~~~~~~al~~~~-------------------------~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  618 (640)
                      .+.|..+|..+....+                         ..   ...-...+..+...|....|...+..++...  +
T Consensus       335 ~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~  412 (450)
T d1qsaa1         335 EAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--S  412 (450)
T ss_dssp             HHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred             hhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--C
Confidence            9999999998753210                         00   0013445778889999999999998887543  4


Q ss_pred             HHHHHHHHHHHHHcCCccccc
Q 006562          619 IECLYLRASCYHAIGEYREAV  639 (640)
Q Consensus       619 ~~~~~~la~~~~~~g~~~~Al  639 (640)
                      +.-...++.+..+.|.++.||
T Consensus       413 ~~~~~~la~lA~~~g~~~~aI  433 (450)
T d1qsaa1         413 KTEQAQLARYAFNNQWWDLSV  433 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCChhHHH
Confidence            667778899999999998876

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.27  E-value=0.13  Score=47.11  Aligned_cols=171  Identities=18%  Similarity=0.136  Sum_probs=97.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 006562          386 SRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGES  465 (640)
Q Consensus       386 ~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  465 (640)
                      ..|..+...|.|+.|..+|...    ++    +-.+..++...+++..|.+.+.+.     +++..|......+....+.
T Consensus        19 ~i~~~c~~~~lye~A~~lY~~~----~d----~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          19 QVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             ----------CTTTHHHHHHHT----TC----HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC----CC----HHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHH
Confidence            4566777788888888877642    11    334456777788888888777665     4566777777777766665


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q 006562          466 VEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAHLKAIQ  545 (640)
Q Consensus       466 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  545 (640)
                      .-|... ..   ....+++-.......|...|.+++.+.+++.++...+.+...+..++.+|.+.+ .++-.+.+.....
T Consensus        86 ~la~i~-~~---~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~  160 (336)
T d1b89a_          86 RLAQMC-GL---HIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWS  160 (336)
T ss_dssp             HHHHHT-TT---TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHST
T ss_pred             HHHHHH-HH---HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccc
Confidence            443211 00   011234445556677777888888888888887777777777777777666543 3444444444211


Q ss_pred             -cCccc-------HHHHHHHHHHHHHhcCHHHHHHHH
Q 006562          546 -LDRNF-------LEAWGHLTQFYQDLANSEKALECL  574 (640)
Q Consensus       546 -~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~  574 (640)
                       .++..       ...|-.+..+|.+.|++++|+..+
T Consensus       161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~  197 (336)
T d1b89a_         161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  197 (336)
T ss_dssp             TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH
Confidence             22211       112344566677777777776544

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.06  E-value=0.51  Score=42.97  Aligned_cols=145  Identities=17%  Similarity=0.067  Sum_probs=84.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 006562          387 RGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTARAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARAALGESV  466 (640)
Q Consensus       387 ~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  466 (640)
                      ...++...+++..|.+.+.+.     +++..|......+.......-|... ...   ...+++-.......|...|.++
T Consensus        46 l~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e  116 (336)
T d1b89a_          46 LASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFE  116 (336)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChH
Confidence            345666777788877777654     4567777777777766655443211 000   1123444445666777778888


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCc-------HHHHHHHHHHHHHcCCHHHHHH
Q 006562          467 EAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVK-LDKEN-------KSAYTYLGLALSSIGEYKKAEE  538 (640)
Q Consensus       467 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-~~~~~-------~~~~~~la~~~~~~g~~~~A~~  538 (640)
                      +.+.+++.++...+.+...+..++.+|.+.+ .++-+++++..-. .++..       ...|-.+..+|.+.|++++|+.
T Consensus       117 ~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~  195 (336)
T d1b89a_         117 ELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  195 (336)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHH
Confidence            8888888877777777777777777776643 3444444433211 11100       1123445666777777777765


Q ss_pred             HHH
Q 006562          539 AHL  541 (640)
Q Consensus       539 ~~~  541 (640)
                      .+-
T Consensus       196 ~~i  198 (336)
T d1b89a_         196 TMM  198 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=1.4  Score=42.09  Aligned_cols=217  Identities=8%  Similarity=-0.060  Sum_probs=132.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 006562          385 LSRGIAQVNEGKYASAISIFDQILKEDPMYPEALIGRGTA----RAFQRELEAAISDFTEAIQSNPSAGEAWKRRGQARA  460 (640)
Q Consensus       385 ~~~a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  460 (640)
                      ...+.......+...|...+.......+.....+......    ....+..+.+...+........+.......++ ...
T Consensus       218 ~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al  296 (450)
T d1qsaa1         218 AAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MAL  296 (450)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHH
T ss_pred             HHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHH
Confidence            3444455556678888888888776665554443333322    23345667777777776655544443333333 345


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006562          461 ALGESVEAIQDLSKALEFEPNSADILHERGIVNFKFKDFNAAVEDLSACVKLDKENKSAYTYLGLALSSIGEYKKAEEAH  540 (640)
Q Consensus       461 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  540 (640)
                      ..+++..+...+..+.......+...+.+|..+...|+.+.|...|..+.. .+ +  .|-.++...  +|..-.   .-
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~-~--fYG~LAa~~--Lg~~~~---~~  367 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR-G--FYPMVAAQR--IGEEYE---LK  367 (450)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC-S--HHHHHHHHH--TTCCCC---CC
T ss_pred             HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC-C--hHHHHHHHH--cCCCCC---CC
Confidence            567888887777654333333466778888888888888888888888764 23 2  333333222  221000   00


Q ss_pred             HHHHccCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHhhc
Q 006562          541 LKAIQLDRNF---LEAWGHLTQFYQDLANSEKALECLQQVLYIDKRFSKAYHLRGLLLHGLGQHKKAIKDLSSGLG  613 (640)
Q Consensus       541 ~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  613 (640)
                      ...+...+..   ...-...+..+...|....|...+..++..  .++.-...+|.+..+.|.++.|+....++-.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         368 IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence            0000000010   112235577788999999999999887653  3566778889999999999999998887743