Citrus Sinensis ID: 006571
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 640 | 2.2.26 [Sep-21-2011] | |||||||
| Q93YS4 | 751 | ABC transporter G family | yes | no | 0.992 | 0.845 | 0.770 | 0.0 | |
| Q9FT51 | 737 | ABC transporter G family | no | no | 0.975 | 0.846 | 0.688 | 0.0 | |
| Q9SZR9 | 638 | ABC transporter G family | no | no | 0.706 | 0.708 | 0.514 | 1e-136 | |
| Q9LK50 | 685 | ABC transporter G family | no | no | 0.753 | 0.703 | 0.484 | 1e-134 | |
| Q9C6W5 | 648 | ABC transporter G family | no | no | 0.714 | 0.705 | 0.509 | 1e-133 | |
| Q84TH5 | 662 | ABC transporter G family | no | no | 0.75 | 0.725 | 0.458 | 1e-127 | |
| Q7XA72 | 672 | ABC transporter G family | no | no | 0.784 | 0.747 | 0.448 | 1e-124 | |
| Q7TMS5 | 657 | ATP-binding cassette sub- | yes | no | 0.75 | 0.730 | 0.352 | 2e-77 | |
| Q4GZT4 | 655 | ATP-binding cassette sub- | yes | no | 0.75 | 0.732 | 0.353 | 1e-76 | |
| Q9UNQ0 | 655 | ATP-binding cassette sub- | yes | no | 0.748 | 0.731 | 0.355 | 2e-76 |
| >sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 994 bits (2571), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 499/648 (77%), Positives = 564/648 (87%), Gaps = 13/648 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETA--------GASDGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++A +SP S A A GGGTLSRKSSRR+
Sbjct: 3 MEKPPLASGLARTRSEQLYETVAADIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 62
Query: 53 LTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPP 112
+ SPGR+ SG THIRKSRSAQLKLEL+EVSSGAALSRASSASLGLSFSFTGF MPP
Sbjct: 63 M-GMSPGRS--SGAGTHIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 119
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSDD+ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 120 EEISDSKPFSDDEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKE 178
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PYSK LKSKI
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 538
Query: 532 DSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLART 591
D ++P GL+DQAGLLFFIAVFW FFP+FTAIF FPQERAML+KERAADMYRLSAYFLART
Sbjct: 539 DIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLART 598
Query: 592 TSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
TSDLPL+ +LP LFL++VYFM GLR+ PFFLSMLTVFL I+AAQ L
Sbjct: 599 TSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGL 646
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 852 bits (2200), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/635 (68%), Positives = 510/635 (80%), Gaps = 11/635 (1%)
Query: 6 SSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSR-RMLTAASPGRAGAS 64
SS+ L + KS ETL+ A KS SS DG S++ R R L++ S +
Sbjct: 6 SSSGLVKAKS----ETLAEALKS--SSLDFSNGDGSSHGSKQHVRARTLSSPSYSSNSKN 59
Query: 65 GRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDD 124
NTHIRK++SA L+L ++ GAALSRASSASLGLSFSFTGFT+P +EI S+ S+D
Sbjct: 60 RWNTHIRKAKSAHPALDLAGLTGGAALSRASSASLGLSFSFTGFTVPHEEIIASERCSND 119
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
DI EDIEA T KFQ EPT PIYLKF D+TYKV KGMTSS EK ILNGI+GS PGE
Sbjct: 120 DILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGE 179
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+LALMGPSGSGKTTLLN L GR + +GGS++YND PYSK LK++IGFVTQDDVLFPHL
Sbjct: 180 LLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHL 239
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TVKETLTY ALLRLP TLT+Q+KE+RA VI ELGLERCQDTMIGGSFVRGVSGGERKRV
Sbjct: 240 TVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDTMIGGSFVRGVSGGERKRV 299
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
CIGNEI+ NPSLL LDEPTS LDSTTAL+IVQML IA+AGKT+VTTIHQPSSRLFH+FD
Sbjct: 300 CIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVTTIHQPSSRLFHRFD 359
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDR 424
KL++L +GSLLYFGKASEAM+YFSSIGCSP +AMNPAEFLLDL NGN++D+SVPS L+++
Sbjct: 360 KLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVNGNMNDISVPSALKEK 419
Query: 425 VQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
++ E N K + +YL EAY+T++A EK KLMAP+PLDEE+K ++ PKR
Sbjct: 420 MKIIRLELYVRNVKCD--VETQYLEEAYKTQIAVMEKMKLMAPVPLDEEVKLMITCPKRE 477
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAG 544
WG SW +QY +L RGIKE RHDYFSWLR+TQVL+TA+ILGLLWWQSD S + ++G
Sbjct: 478 WGLSWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAIILGLLWWQSDITSQR--PTRSG 535
Query: 545 LLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVL 604
LLFFIAVFW FFP+FTAIFTFPQERAMLSKER ++MYRLSAYF+ARTTSDLPL+L+LPVL
Sbjct: 536 LLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAYFVARTTSDLPLDLILPVL 595
Query: 605 FLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
FLV+VYFMAGLR+ A FFLS+LTVFL IVAAQ L
Sbjct: 596 FLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGL 630
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 486 bits (1252), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/490 (51%), Positives = 330/490 (67%), Gaps = 38/490 (7%)
Query: 147 PIYLKFTDVTYKVILKGMTS-------SEEKDILNGITGSVNPGEVLALMGPSGSGKTTL 199
P+ LKF ++ Y V LK +EE+ IL G+TG V PGE+LA++GPSGSGKT+L
Sbjct: 34 PVTLKFENLVYTVKLKDSQGCFGKNDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSL 93
Query: 200 LNLLSGRLMEPT--VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
L L GR+ E + G+I+YN+ P SK++K GFVTQDD L+P+LTV ETL + ALLR
Sbjct: 94 LTALGGRVGEGKGKLTGNISYNNKPLSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLR 153
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
LPN+ KQ+K K+A V+ ELGL+RC+DT+IGG F+RGVSGGERKRV IG EI+INPSLL
Sbjct: 154 LPNSFKKQEKIKQAKAVMTELGLDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLL 213
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377
FLDEPTSGLDSTTA RIV +L ++A G+TVVTTIHQPSSRLF+ FDKL+LL +G+ +YF
Sbjct: 214 FLDEPTSGLDSTTAQRIVSILWELARGGRTVVTTIHQPSSRLFYMFDKLLLLSEGNPVYF 273
Query: 378 GKASEAMAYFSSIGCSPQIA-MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTAN 436
G S AM YF+S+G SP + +NP++FLLD+ANG V ++ S+
Sbjct: 274 GLGSNAMDYFASVGYSPLVERINPSDFLLDIANG--------------VGSDESQR---- 315
Query: 437 GKPTPAIVHEYLVEAYETRVAE---NEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQY 493
P + LV Y+T + + NE K E ++ +W +W QQ+
Sbjct: 316 ----PEAMKAALVAFYKTNLLDSVINEVKGQDDLCNKPRESSRVATNTYGDWPTTWWQQF 371
Query: 494 TILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFW 553
+L +RG+K+ RHD FS +++ Q+ + + GLLWWQ+ L+DQ GLLFFI+ FW
Sbjct: 372 CVLLKRGLKQRRHDSFSGMKVAQIFIVSFLCGLLWWQTKISR---LQDQIGLLFFISSFW 428
Query: 554 SFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMA 613
+FFP+F IFTFPQERAML KER++ MYRLS YFL+R DLP+ L+LP FLVI Y+MA
Sbjct: 429 AFFPLFQQIFTFPQERAMLQKERSSGMYRLSPYFLSRVVGDLPMELILPTCFLVITYWMA 488
Query: 614 GLRMGAGPFF 623
GL FF
Sbjct: 489 GLNHNLANFF 498
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 480 bits (1236), Expect = e-134, Method: Compositional matrix adjust.
Identities = 248/512 (48%), Positives = 342/512 (66%), Gaps = 30/512 (5%)
Query: 146 LPIYLKFTDVTYKV---------ILKGMTSSE----------EKDILNGITGSVNPGEVL 186
LPI+LKF DV YKV ++K M S K IL GITGS PGE+L
Sbjct: 61 LPIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYKHILKGITGSTGPGEIL 120
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
ALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K +IGFVTQDDVL P LTV
Sbjct: 121 ALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKRRIGFVTQDDVLLPQLTV 179
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +GG FV+G+SGGERKR I
Sbjct: 180 EETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGERKRASI 239
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+TTIHQPSSR+FH FDKL
Sbjct: 240 AYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFHMFDKL 299
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA G + D+S+P EL +
Sbjct: 300 LLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLATGQVSDISLPDEL---LA 356
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWG 486
+ ++ D+ ++ +YL + Y+T + EK++ E ++ + K++W
Sbjct: 357 AKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRKAPEHLQIAIQV-KKDWT 409
Query: 487 ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLL 546
SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW+S + + L DQ GL+
Sbjct: 410 LSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLM 469
Query: 547 FFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFL 606
F+I +FW+ +F A++ FP E+ L KER A+MYRLS Y++ T D+ +++ P F+
Sbjct: 470 FYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFM 529
Query: 607 VIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQA 638
+IVYFMA F ++LT+ L + +Q
Sbjct: 530 IIVYFMAEFNRNIPCFLFTVLTILLIAITSQG 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 477 bits (1227), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/493 (50%), Positives = 330/493 (66%), Gaps = 36/493 (7%)
Query: 138 PKFQTEPTL-----PIYLKFTDVTYKVILK------GMTSSEEKDILNGITGSVNPGEVL 186
P ++P L PI LKF +V YKV ++ G S+EK ILNGITG V PGE L
Sbjct: 36 PTITSQPGLQMSMYPITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFL 95
Query: 187 ALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246
A++GPSGSGKTTLL+ L GRL + T G + YN P+S +K + GFV QDDVL+PHLTV
Sbjct: 96 AMLGPSGSGKTTLLSALGGRLSK-TFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTV 154
Query: 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306
ETL + ALLRLP++LT+ +K + VI ELGL RC ++MIGG RG+SGGE+KRV I
Sbjct: 155 WETLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSI 214
Query: 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366
G E++INPSLL LDEPTSGLDSTTA RIV ++ +A G+TVVTTIHQPSSR++H FDK+
Sbjct: 215 GQEMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKV 274
Query: 367 ILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQ 426
+LL +GS +Y+G AS A+ YFSS+G S + +NPA+ LLDLANG +P + Q
Sbjct: 275 VLLSEGSPIYYGAASSAVEYFSSLGFSTSLTVNPADLLLDLANG------IPPD----TQ 324
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLM-APIPLDEEIKAKVSSPK-RN 484
E SE + V E LV AYE ++ K +L A E KA + K
Sbjct: 325 KETSEQEQKT-------VKETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQ 377
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKG-LEDQA 543
W +W Q+T+L +RG++E R + F+ LRI QV++ A + GLLWW +PK ++D+
Sbjct: 378 WCTTWWYQFTVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWH----TPKSHIQDRT 433
Query: 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603
LLFF +VFW F+P++ A+FTFPQE+ ML KER++ MYRLS+YF+AR DLPL L LP
Sbjct: 434 ALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPT 493
Query: 604 LFLVIVYFMAGLR 616
F+ I+Y+M GL+
Sbjct: 494 AFVFIIYWMGGLK 506
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/534 (45%), Positives = 333/534 (62%), Gaps = 54/534 (10%)
Query: 135 RERPKFQTEPTLPIYLKFTDVTYKVILKGMT---------------------SSEEKDIL 173
RE + PI LKF DV Y+V + GM+ S+EE+ IL
Sbjct: 25 REPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDETRSTEERTIL 84
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGF 233
+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K + GF
Sbjct: 85 SGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITKQTLKRTGF 144
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
V QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++T++G +F+
Sbjct: 145 VAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCENTVVGNTFI 204
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTI 352
RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A GKTVVT+I
Sbjct: 205 RGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGKGKTVVTSI 264
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNL 412
HQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FLLDLANG
Sbjct: 265 HQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFLLDLANG-- 322
Query: 413 HDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL-MAPIPLD 471
++ T KP V + LV AY+T +A K + ++ P D
Sbjct: 323 --------------VCQTDGVTEREKPN---VRQTLVTAYDTLLAPQVKTCIEVSHFPQD 365
Query: 472 EEIKAKVSSPKRNWG------ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILG 525
A+ + N G A+W Q IL R +KE RH+ F LRI QV+A +++ G
Sbjct: 366 N---ARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQVVAASILCG 422
Query: 526 LLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSA 585
L+WW SD + + D+ GLLFFI++FW P F A+FTFPQERA+ ++ERA+ MY LS+
Sbjct: 423 LMWWHSDYRD---VHDRLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTLSS 479
Query: 586 YFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
YF+A L + LVLP FL Y+M LR G PF L++ + L ++A+Q L
Sbjct: 480 YFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGL 533
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 446 bits (1148), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/539 (44%), Positives = 348/539 (64%), Gaps = 37/539 (6%)
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMT--------SSEEK 170
P DDD D + + + PI LKF ++TY + K T S E K
Sbjct: 37 NPCLDDDNDHDGPSHQSRQSSVLRQSLRPIILKFEELTYSI--KSQTGKGSYWFGSQEPK 94
Query: 171 D---ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+L ++G V PGE+LA++GPSGSGKTTL+ L+GRL + + G+++YN P++ S+
Sbjct: 95 PNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRL-QGKLSGTVSYNGEPFTSSV 153
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
K K GFVTQDDVL+PHLTV ETLTY ALLRLP LT+++K ++ V+++LGL RC +++
Sbjct: 154 KRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSV 213
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
IGG +RG+SGGERKRV IG E+++NPSLL LDEPTSGLDSTTA RIV L+ +A G+T
Sbjct: 214 IGGGLIRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRT 273
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA-MNPAEFLLD 406
VVTTIHQPSSRL+ FDK+++L +G +Y G + M YF SIG P + +NPA+F+LD
Sbjct: 274 VVTTIHQPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLD 333
Query: 407 LANGNLHDVSVPSELQ-----DRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461
LANG D +++ DR++ +NS V + L+ +Y+ + K
Sbjct: 334 LANGITSDTKQYDQIETNGRLDRLEEQNS-------------VKQSLISSYKKNLYPPLK 380
Query: 462 KKLMAPIPLDE-EIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLAT 520
+++ P D+ + + + W SW Q+++L +RG+KE H+ FS LRI V++
Sbjct: 381 EEVSRTFPQDQTNARLRKKAITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSV 440
Query: 521 AVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADM 580
+++ GLLWW S L+DQ GLLFF ++FW FFP+F AIFTFPQER ML KER++ +
Sbjct: 441 SLLSGLLWWHSRVAH---LQDQVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGI 497
Query: 581 YRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
YRLS+Y++ART DLP+ L+LP +F+ I Y+M GL+ F ++++ V +++ AQ +
Sbjct: 498 YRLSSYYIARTVGDLPMELILPTIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGV 556
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7TMS5|ABCG2_MOUSE ATP-binding cassette sub-family G member 2 OS=Mus musculus GN=Abcg2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (743), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 175/497 (35%), Positives = 278/497 (55%), Gaps = 17/497 (3%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P K G+V QDDV+ LTV+E L ++A LRLP T+ +
Sbjct: 96 KDPKGLSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGLE+ D+ +G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275
Query: 387 FSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHE 446
F+S G + NPA+F LD+ NG+ V + E QD + +E + KP V E
Sbjct: 276 FASAGYHCEPYNNPADFFLDVINGDSSAVMLNREEQDN-EANKTEEPSKGEKP----VIE 330
Query: 447 YLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRH 506
L E Y E K + +P +E K + + + S+ Q + RR K
Sbjct: 331 NLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNLLG 390
Query: 507 DYFSWLRITQVLATAVILGLL---WWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIF 563
+ + Q++ T VILGL+ + G++++AG+LFF+ F + +A+
Sbjct: 391 N--PQASVAQLIVT-VILGLIIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSV-SAVE 446
Query: 564 TFPQERAMLSKERAADMYRLSAYFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGPF 622
F E+ + E + YR+S+YF + SD LP+ + V+F ++YFM GL+ F
Sbjct: 447 LFVVEKKLFIHEYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKTVDAF 506
Query: 623 FLSMLTVFLSIVAAQAL 639
F+ M T+ + A ++
Sbjct: 507 FIMMFTLIMVAYTASSM 523
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). May play a role in early stem cell self-renewal by blocking differentiation. Mus musculus (taxid: 10090) |
| >sp|Q4GZT4|ABCG2_BOVIN ATP-binding cassette sub-family G member 2 OS=Bos taurus GN=ABCG2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 277/498 (55%), Gaps = 18/498 (3%)
Query: 150 LKFTDVTYKVILKG----MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 94
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 95 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 154
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 155 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 214
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 215 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 274
Query: 386 YFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445
YF +IG + NPA+F LD+ NG+ V + E + E +E + + K TP I
Sbjct: 275 YFGAIGFRCEPYNNPADFFLDIINGDSSAVVLNRE---DIGDEANETEEPSKKDTPLI-- 329
Query: 446 EYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHR 505
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 330 EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKNLL 389
Query: 506 HDYFSWLRITQVLATAVILGLL---WWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAI 562
+ I Q++ T V LGL+ + P G++++AG+LFF+ F + +A+
Sbjct: 390 GN--PQASIAQLIVT-VFLGLVIGAIFYDLKNDPAGIQNRAGVLFFLTTNQCFSSV-SAV 445
Query: 563 FTFPQERAMLSKERAADMYRLSAYFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGP 621
E+ + E + YR+S+YF + SD LP+ ++ ++F I YF+ GL+
Sbjct: 446 ELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPKVEA 505
Query: 622 FFLSMLTVFLSIVAAQAL 639
FF+ MLT+ + +A ++
Sbjct: 506 FFIMMLTLMMVAYSASSM 523
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Bos taurus (taxid: 9913) |
| >sp|Q9UNQ0|ABCG2_HUMAN ATP-binding cassette sub-family G member 2 OS=Homo sapiens GN=ABCG2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 177/498 (35%), Positives = 282/498 (56%), Gaps = 19/498 (3%)
Query: 150 LKFTDVTYKVILKG----MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V LK EK+IL+ I G + PG + A++GP+G GK++LL++L+
Sbjct: 37 LSFHNICYRVKLKSGFLPCRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAA 95
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRL T+T
Sbjct: 96 RKDPSGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNH 155
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR IG E+I +PS+LFLDEPT+G
Sbjct: 156 EKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTG 215
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 216 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 275
Query: 386 YFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445
YF S G + NPA+F LD+ NG+ V++ E +D TE E + KP +
Sbjct: 276 YFESAGYHCEAYNNPADFFLDIINGDSTAVALNRE-EDFKATEIIE-PSKQDKP----LI 329
Query: 446 EYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHR 505
E L E Y E K + + E+ K + ++ S+ Q + +R K
Sbjct: 330 EKLAEIYVNSSFYKETKAELHQLSGGEKKKKITVFKEISYTTSFCHQLRWVSKRSFKNLL 389
Query: 506 HDYFSWLRITQVLATAV---ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAI 562
+ I Q++ T V ++G +++ + S G++++AG+LFF+ F + +A+
Sbjct: 390 GN--PQASIAQIIVTVVLGLVIGAIYFGLKNDS-TGIQNRAGVLFFLTTNQCFSSV-SAV 445
Query: 563 FTFPQERAMLSKERAADMYRLSAYFLARTTSD-LPLNLVLPVLFLVIVYFMAGLRMGAGP 621
F E+ + E + YR+S+YFL + SD LP+ ++ ++F IVYFM GL+ A
Sbjct: 446 ELFVVEKKLFIHEYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKADA 505
Query: 622 FFLSMLTVFLSIVAAQAL 639
FF+ M T+ + +A ++
Sbjct: 506 FFVMMFTLMMVAYSASSM 523
|
Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux. Appears to play a major role in the multidrug resistance phenotype of several cancer cell lines. When overexpressed, the transfected cells become resistant to mitoxantrone, daunorubicin and doxorubicin, display diminished intracellular accumulation of daunorubicin, and manifest an ATP-dependent increase in the efflux of rhodamine 123. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 640 | ||||||
| 224138238 | 744 | white-brown-complex ABC transporter fami | 0.993 | 0.854 | 0.848 | 0.0 | |
| 255566225 | 749 | ATP-binding cassette transporter, putati | 0.995 | 0.850 | 0.833 | 0.0 | |
| 356500545 | 743 | PREDICTED: ABC transporter G family memb | 0.985 | 0.849 | 0.833 | 0.0 | |
| 356534584 | 738 | PREDICTED: ABC transporter G family memb | 0.981 | 0.850 | 0.825 | 0.0 | |
| 356505453 | 740 | PREDICTED: ABC transporter G family memb | 0.985 | 0.852 | 0.801 | 0.0 | |
| 356570916 | 736 | PREDICTED: ABC transporter G family memb | 0.975 | 0.847 | 0.809 | 0.0 | |
| 224091479 | 743 | white-brown-complex ABC transporter fami | 0.993 | 0.855 | 0.829 | 0.0 | |
| 296089333 | 738 | unnamed protein product [Vitis vinifera] | 0.979 | 0.849 | 0.827 | 0.0 | |
| 297810759 | 750 | abc transporter family protein [Arabidop | 0.993 | 0.848 | 0.768 | 0.0 | |
| 449437512 | 749 | PREDICTED: ABC transporter G family memb | 0.995 | 0.850 | 0.799 | 0.0 |
| >gi|224138238|ref|XP_002322764.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222867394|gb|EEF04525.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 545/642 (84%), Positives = 597/642 (92%), Gaps = 6/642 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDG--GGTLSRKSSRRMLTAASP 58
MEK +TSLART+S+QLVET++AAFKSP ++E G SDG GGTLSRKSS+R++ AASP
Sbjct: 1 MEK--ENTSLARTRSEQLVETVAAAFKSPSNNEAIGVSDGSSGGTLSRKSSKRLMMAASP 58
Query: 59 GRAGASG-RNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIAD 117
GR+ + G +NTHIRKSRSAQ+K +LD+VSSGAALSRASSASLG SFSFTGF MPPDEIAD
Sbjct: 59 GRSTSGGNKNTHIRKSRSAQMKFDLDDVSSGAALSRASSASLGFSFSFTGFNMPPDEIAD 118
Query: 118 SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGIT 177
SKPFSDDDIPED+EAGTR +PKFQTEPTLPIYLKFTDVTYKVI+KGMTS+EEKDIL GI+
Sbjct: 119 SKPFSDDDIPEDLEAGTR-KPKFQTEPTLPIYLKFTDVTYKVIIKGMTSTEEKDILYGIS 177
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GSV+PGEVLALMGPSGSGKTTLLNL+ GRL + TVGGS+TYND PYSK LKS+IGFVTQD
Sbjct: 178 GSVDPGEVLALMGPSGSGKTTLLNLIGGRLNQTTVGGSLTYNDQPYSKFLKSRIGFVTQD 237
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
DVLFPHLTVKETLTYAALLRLP TLTK+QK+KRAIDVI ELGLERCQDTMIGGSFVRGVS
Sbjct: 238 DVLFPHLTVKETLTYAALLRLPKTLTKEQKQKRAIDVIYELGLERCQDTMIGGSFVRGVS 297
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+LQDIAE GKTVVTTIHQPSS
Sbjct: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQLLQDIAEGGKTVVTTIHQPSS 357
Query: 358 RLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSV 417
RLFHKFDKLILLGKGSLLYFGKASEAM YFSSIGC+P IAMNPAEFLLDLANGN++DVSV
Sbjct: 358 RLFHKFDKLILLGKGSLLYFGKASEAMLYFSSIGCNPLIAMNPAEFLLDLANGNINDVSV 417
Query: 418 PSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 477
PSEL+D+VQ NSE +T NGKP+PA+VHEYLVEAYETRVA+ EKKKLM PIPLDEE+K+K
Sbjct: 418 PSELEDKVQIGNSEAETRNGKPSPAVVHEYLVEAYETRVADKEKKKLMVPIPLDEEVKSK 477
Query: 478 VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
VSS KR WGASW +QYTILF RGIKE RHDYFSWLRITQVL+TA+ILGLLWW+SDS SPK
Sbjct: 478 VSSRKRQWGASWWEQYTILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWKSDSSSPK 537
Query: 538 GLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597
GL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL
Sbjct: 538 GLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597
Query: 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
+L+LPVLFL++VYFMAGLR+ A PFFL+MLTVFL IVAAQ L
Sbjct: 598 DLILPVLFLLVVYFMAGLRLSAAPFFLTMLTVFLCIVAAQGL 639
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255566225|ref|XP_002524100.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536668|gb|EEF38310.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1089 bits (2816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 536/643 (83%), Positives = 594/643 (92%), Gaps = 6/643 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGA----SDGGGTLSRKSSRRMLTAA 56
MEK S TSL RTKSDQLVETL+AAFKSP ++E A A ++ GTLSRKSS+R++ AA
Sbjct: 1 MEK-TSVTSLVRTKSDQLVETLAAAFKSPPTNEAAAAGGTSTESSGTLSRKSSKRLMVAA 59
Query: 57 SPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIA 116
SPGR+ SG+NTHIRK+RSAQ+K +LD+++SGAALSRASSASLGLSFSFTGF +P DEIA
Sbjct: 60 SPGRSNGSGKNTHIRKTRSAQMKFDLDDLNSGAALSRASSASLGLSFSFTGFAVPQDEIA 119
Query: 117 DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGI 176
D+KPFSDDDIPED+EAG R +PKFQTEPTLPIYLKFTDVTYKVI+KG+ S+EEKDILNGI
Sbjct: 120 DTKPFSDDDIPEDLEAGMR-KPKFQTEPTLPIYLKFTDVTYKVIIKGIASTEEKDILNGI 178
Query: 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQ 236
+GSV+PG+VLALMGPSGSGKT+LLNLLSGRL+ TVGG+ITYND PY K+LKS+IGFVTQ
Sbjct: 179 SGSVDPGQVLALMGPSGSGKTSLLNLLSGRLIHQTVGGTITYNDQPYCKNLKSRIGFVTQ 238
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
DDVLFPHLTVKETLTYAA LRLP TLT++QKEKRA+DVI ELGLERCQDTMIGGSFVRGV
Sbjct: 239 DDVLFPHLTVKETLTYAARLRLPKTLTREQKEKRALDVIYELGLERCQDTMIGGSFVRGV 298
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS
Sbjct: 299 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 358
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVS 416
SRLFHKFDKLILLGKGSLLYFGKASE M YFSSIGC+P IAMNPAEFLLDLANGN++DVS
Sbjct: 359 SRLFHKFDKLILLGKGSLLYFGKASETMPYFSSIGCNPLIAMNPAEFLLDLANGNINDVS 418
Query: 417 VPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKA 476
VPSEL+DRVQ NS+ DT NGKP+P++VHEYLVEAYETRVAE EKKK+M PIPLDEE+K
Sbjct: 419 VPSELEDRVQMGNSDIDTGNGKPSPSVVHEYLVEAYETRVAEMEKKKIMVPIPLDEEVKL 478
Query: 477 KVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSP 536
KV+SPKR WGASW QQ+TIL RGIKE RHDYFSWLRITQVL+TAVILGLLWWQS+S+S
Sbjct: 479 KVASPKRLWGASWWQQFTILLCRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSNSRSL 538
Query: 537 KGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLP 596
KGL+DQ+GLLFFIAVFW FFP+FTAIFTFPQERAML+KERAADMYRLSAYFLARTTSDLP
Sbjct: 539 KGLQDQSGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRLSAYFLARTTSDLP 598
Query: 597 LNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
L+L+LPVLFL++VYFMAGLRM AGPFFLS+LTVFL IVAAQ L
Sbjct: 599 LDLILPVLFLLVVYFMAGLRMSAGPFFLSLLTVFLCIVAAQGL 641
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356500545|ref|XP_003519092.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1070 bits (2766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/644 (83%), Positives = 585/644 (90%), Gaps = 13/644 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETA--GASDGGGTLSRKSSRRMLTAASP 58
MEK ++TSL RTKSDQLVE++ AA KSP SS+ + G +GGGT+SRKSSRR LT ASP
Sbjct: 1 MEK--ANTSLVRTKSDQLVESMVAALKSPASSDHSANGVVEGGGTISRKSSRR-LTGASP 57
Query: 59 GRAGASGRNTHIRKSRSAQ---LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEI 115
GR G +NTHIRKSRSAQ +KLELD+VSSGAALSRASSASLGLSFSFTGFTMPP+EI
Sbjct: 58 GRGG---KNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEI 114
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
ADSKPFSDDDIPEDIE+G R KFQTEPTLPIYLKFTDVTYK+++KGMT++EEKDILNG
Sbjct: 115 ADSKPFSDDDIPEDIESGPRT--KFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNG 172
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235
ITGSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PYSK LKS+IGFVT
Sbjct: 173 ITGSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVT 232
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
QDDVLFPHLTVKETLTYAA LRLP T TK+QKEKRA+DVI ELGLERCQDTMIGGSFVRG
Sbjct: 233 QDDVLFPHLTVKETLTYAARLRLPKTYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRG 292
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP
Sbjct: 293 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 352
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDV 415
SSRLFHKFDKLILLGKGSLLYFGKASEAM YF SIGCSP I+MNPAEFLLDLANGN++DV
Sbjct: 353 SSRLFHKFDKLILLGKGSLLYFGKASEAMTYFQSIGCSPLISMNPAEFLLDLANGNINDV 412
Query: 416 SVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIK 475
S+PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+LM PIP+DE +K
Sbjct: 413 SLPSELEDKVQMGNAEAETLNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPIDEALK 472
Query: 476 AKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
KV S KR WGASW +QY+ILF RGIKE RHDYFSWLRITQVL+TAVILGLLWWQSD+K+
Sbjct: 473 TKVCSHKRQWGASWDEQYSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKN 532
Query: 536 PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 595
PK L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL
Sbjct: 533 PKDLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 592
Query: 596 PLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
PL+L+LPVLFL++VYFMAGLR+ PFFL++LTVFL IVAAQ L
Sbjct: 593 PLDLILPVLFLLVVYFMAGLRLSVAPFFLTILTVFLCIVAAQGL 636
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534584|ref|XP_003535833.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 530/642 (82%), Positives = 575/642 (89%), Gaps = 14/642 (2%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGR 60
MEK ++TSL RTKSDQL+E++ A KSP SS+ S G SRKSSR LT ASPGR
Sbjct: 1 MEK--ANTSLVRTKSDQLLESMVAGLKSPPSSD---HSANGVVDSRKSSR-WLTGASPGR 54
Query: 61 AGASGRNTHIRKSRSAQ---LKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIAD 117
G +NTHIRKSRSAQ +KLELD+VSSGAALSRASSASLGLSFSFTGFTMPP+EIAD
Sbjct: 55 GG---KNTHIRKSRSAQISQMKLELDDVSSGAALSRASSASLGLSFSFTGFTMPPEEIAD 111
Query: 118 SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGIT 177
SKPFSDDDIPEDIEAG R KFQTEPTLPIYLKFTDVTYK+++KGMT++EEKDILNGIT
Sbjct: 112 SKPFSDDDIPEDIEAGPRT--KFQTEPTLPIYLKFTDVTYKIVIKGMTTTEEKDILNGIT 169
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GSVNPGEVLALMGPSGSGKTTLLNLL GRL P GGSITYND PYSK LKS+IGFVTQD
Sbjct: 170 GSVNPGEVLALMGPSGSGKTTLLNLLGGRLSHPISGGSITYNDQPYSKFLKSRIGFVTQD 229
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
DVLFPHLTVKETLTYAA LRLP TK+QKEKRA+DVI ELGLERCQDTMIGGSFVRGVS
Sbjct: 230 DVLFPHLTVKETLTYAARLRLPKAYTKEQKEKRALDVIYELGLERCQDTMIGGSFVRGVS 289
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357
GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS
Sbjct: 290 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 349
Query: 358 RLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSV 417
RLFHKFDKLILLGKGSLLYFGKASE M YF SIGCSP I+MNPAEFLLDLANGN++DVS+
Sbjct: 350 RLFHKFDKLILLGKGSLLYFGKASETMTYFQSIGCSPLISMNPAEFLLDLANGNINDVSL 409
Query: 418 PSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAK 477
PSEL+D+VQ N+E +T NGKP+PA+VHEYLVEAYETRVAE EKK+LM PIPLDE +K K
Sbjct: 410 PSELEDKVQMGNAEAETQNGKPSPAVVHEYLVEAYETRVAETEKKRLMVPIPLDEALKTK 469
Query: 478 VSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPK 537
V S KR WGASW +Q++ILF RGIKE RHDYFSWLRITQVL+TAVILGLLWWQSD+K+PK
Sbjct: 470 VCSHKRQWGASWDEQFSILFWRGIKERRHDYFSWLRITQVLSTAVILGLLWWQSDTKNPK 529
Query: 538 GLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 597
L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL
Sbjct: 530 DLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL 589
Query: 598 NLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
+L+LPVLFL++VYFMAGLR+ PFFL++LTVFL IVAAQ L
Sbjct: 590 DLILPVLFLLVVYFMAGLRLSVAPFFLTVLTVFLCIVAAQGL 631
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505453|ref|XP_003521505.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/641 (80%), Positives = 577/641 (90%), Gaps = 10/641 (1%)
Query: 1 MEKPVSSTSLARTKSDQL-VETL-SAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASP 58
ME +S+SLARTKSDQL VET+ + A KSP S+E GGG LSRKSS RM A SP
Sbjct: 1 MENASTSSSLARTKSDQLAVETVATTAEKSPPSAE------GGGALSRKSSWRMTAAPSP 54
Query: 59 GRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADS 118
G G RNT+IRK+RSAQLK+E+DEV SG ALSRASSASLGLSFSFTGFT+PPDEIADS
Sbjct: 55 GGGGGG-RNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADS 113
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
KPFSDDDIPEDIEAGT +PKFQTEPTLPIYLKFTDVTYK+++KG+T+++EKDIL GITG
Sbjct: 114 KPFSDDDIPEDIEAGT-PKPKFQTEPTLPIYLKFTDVTYKLVMKGITTTKEKDILKGITG 172
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
SVNPGEVLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PYSK LKS+IGFVTQDD
Sbjct: 173 SVNPGEVLALMGPSGSGKTSLLNLLGGRLIQCTIGGSITYNDQPYSKFLKSRIGFVTQDD 232
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298
VLFPHLTVKETLTYAALLRLPNTL K+QKEKRA++VI ELGLERCQDTMIGGS+VRG+SG
Sbjct: 233 VLFPHLTVKETLTYAALLRLPNTLRKEQKEKRALEVIEELGLERCQDTMIGGSYVRGISG 292
Query: 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358
GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR
Sbjct: 293 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 352
Query: 359 LFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVP 418
LFHKFDKLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEFLLDLANGN++D+SVP
Sbjct: 353 LFHKFDKLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVP 412
Query: 419 SELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKV 478
SEL+D+VQ N+E +T+NGKP+ ++V EYLVEAY++RVAE EK KLM P+PLDEE+K+KV
Sbjct: 413 SELKDKVQMGNAEAETSNGKPSASVVQEYLVEAYDSRVAEIEKTKLMIPVPLDEELKSKV 472
Query: 479 SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKG 538
S KR WGASW +Q++ILF RG +E RHDYFSWLRITQVLATAVILGLLWWQSD+K+PKG
Sbjct: 473 CSCKRQWGASWFEQFSILFSRGFRERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKG 532
Query: 539 LEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLN 598
L+DQAGLLFFIAVFW FFP+FTAIFTFPQERAML+KER DMYRLSAYF+ARTTSDL L+
Sbjct: 533 LQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLD 592
Query: 599 LVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
LVLPV FL++VYFMA LR+G+G FF S+LTVFL I+AAQ L
Sbjct: 593 LVLPVFFLLVVYFMANLRLGSGRFFFSILTVFLCIIAAQGL 633
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570916|ref|XP_003553629.1| PREDICTED: ABC transporter G family member 22-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/635 (80%), Positives = 576/635 (90%), Gaps = 11/635 (1%)
Query: 6 SSTSLARTKSDQLVETL-SAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGAS 64
S++SLARTKSDQL+ET+ + A KSP S+E GGG LSRKSS RM TA+SPG G
Sbjct: 5 STSSLARTKSDQLLETVATTAEKSPPSAE------GGGVLSRKSSWRM-TASSPG--GGG 55
Query: 65 GRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDD 124
GRNT+IRK+RSAQLK+E+DEV SG ALSRASSASLGLSFSFTGFT+PPDEIADSKPFSDD
Sbjct: 56 GRNTYIRKARSAQLKVEVDEVGSGVALSRASSASLGLSFSFTGFTLPPDEIADSKPFSDD 115
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
DIPEDIEAGT +PKFQTEPTLPIYLKFTDVTYKV++KG+T+++EKDIL GITGSVNPGE
Sbjct: 116 DIPEDIEAGT-PKPKFQTEPTLPIYLKFTDVTYKVVMKGITTTKEKDILKGITGSVNPGE 174
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
VLALMGPSGSGKT+LLNLL GRL++ T+GGSITYND PYSK LKS+IGFVTQDDVLFPHL
Sbjct: 175 VLALMGPSGSGKTSLLNLLGGRLIQSTIGGSITYNDQPYSKFLKSRIGFVTQDDVLFPHL 234
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TVKETLTYAA LRLPNTLTK+QKEKRA++VI+ELGLERCQDTMIGGS+VRG+SGGERKRV
Sbjct: 235 TVKETLTYAARLRLPNTLTKEQKEKRALEVIDELGLERCQDTMIGGSYVRGISGGERKRV 294
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD
Sbjct: 295 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 354
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDR 424
KLILLGKGSLLYFGKAS+AM YF IGC+P IAMNPAEFLLDLANGN++D+SVPSEL+D
Sbjct: 355 KLILLGKGSLLYFGKASDAMDYFQFIGCAPLIAMNPAEFLLDLANGNVNDISVPSELKDI 414
Query: 425 VQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
VQ N+E +T NGKP+ ++V EYLVEAY++RVAE EK KLM P+PLD E+K+KV S KR
Sbjct: 415 VQVGNAEAETCNGKPSASVVQEYLVEAYDSRVAEIEKTKLMVPVPLDVELKSKVCSCKRQ 474
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAG 544
WGASW +Q++ILF RG KE RHDYFSWLRITQVLATAVILGLLWWQSD+K+PKGL+DQAG
Sbjct: 475 WGASWFEQFSILFSRGFKERRHDYFSWLRITQVLATAVILGLLWWQSDAKTPKGLQDQAG 534
Query: 545 LLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVL 604
LLFFIAVFW FFP+FTAIFTFPQERAML+KER DMYRLSAYF+ARTTSDL L+LVLPV
Sbjct: 535 LLFFIAVFWGFFPVFTAIFTFPQERAMLTKERTTDMYRLSAYFVARTTSDLLLDLVLPVF 594
Query: 605 FLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
FL++VYFMA LR+G+G FF S+LTVFL I+AAQ L
Sbjct: 595 FLLLVYFMANLRLGSGRFFFSILTVFLCIIAAQGL 629
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091479|ref|XP_002309268.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222855244|gb|EEE92791.1| white-brown-complex ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 531/640 (82%), Positives = 584/640 (91%), Gaps = 4/640 (0%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGR 60
ME+ ++TSLARTKS+QL ET+ AAFKSP++++ GGTLS KSS+R+ TAASPGR
Sbjct: 1 MER--ANTSLARTKSEQLAETVEAAFKSPMNNDGVSEGGSGGTLSGKSSKRLTTAASPGR 58
Query: 61 AGASG-RNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSK 119
+ G +NTHIRKSRSAQ+K ELD+V+SGAALSRASSASLG SFSFTGF MPPDEIADS
Sbjct: 59 TTSGGNKNTHIRKSRSAQMKFELDDVNSGAALSRASSASLGFSFSFTGFNMPPDEIADSM 118
Query: 120 PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGS 179
PFSDDDIPED+EAG R++ KFQTEP+LPIYLKF DVTYKVI+KGMTS+EEKDILNGI+GS
Sbjct: 119 PFSDDDIPEDLEAGMRKQ-KFQTEPSLPIYLKFRDVTYKVIIKGMTSTEEKDILNGISGS 177
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
V+PGEVLALMGPSGSGKTTLLNLL GRL +PTVGGSITYND PYSK LKS+IGFVTQDD+
Sbjct: 178 VDPGEVLALMGPSGSGKTTLLNLLGGRLNQPTVGGSITYNDGPYSKFLKSRIGFVTQDDI 237
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
LFPHLTVKETLTYAALLRLP TLTKQQK+KRA+DVI ELGLERCQDT+IGGSFVRGVSGG
Sbjct: 238 LFPHLTVKETLTYAALLRLPKTLTKQQKQKRAMDVIYELGLERCQDTVIGGSFVRGVSGG 297
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359
ERKRVCIGNEIIINPS+LFLDEPTSGLDSTTAL+ VQ+LQD+AE GKTVVTTIHQPSSRL
Sbjct: 298 ERKRVCIGNEIIINPSILFLDEPTSGLDSTTALKTVQLLQDMAEGGKTVVTTIHQPSSRL 357
Query: 360 FHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPS 419
FHKFDKLILLGKGSLLYFGK+SEAM YFSSIGC+P IAMNPAEFLLDLANGN++DVSVPS
Sbjct: 358 FHKFDKLILLGKGSLLYFGKSSEAMLYFSSIGCNPLIAMNPAEFLLDLANGNINDVSVPS 417
Query: 420 ELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVS 479
EL D+VQ NS+ NGKP+PA+VHEYLVEAYETRVA EKKKLM PIPLDEE+KAKVS
Sbjct: 418 ELDDKVQIVNSDAGKRNGKPSPAVVHEYLVEAYETRVAVKEKKKLMVPIPLDEEVKAKVS 477
Query: 480 SPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539
S KR WGASW QQYTILF RGIKE RHDYFSWLRITQVL+TA+ILGLLWW SD+ S KGL
Sbjct: 478 SLKRQWGASWWQQYTILFCRGIKERRHDYFSWLRITQVLSTAIILGLLWWNSDTNSLKGL 537
Query: 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNL 599
+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPL+L
Sbjct: 538 QDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLDL 597
Query: 600 VLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
VLPVLFL++VYFMAGLRM A PFFL+MLTVFLSI+AAQ L
Sbjct: 598 VLPVLFLLVVYFMAGLRMSAAPFFLTMLTVFLSIIAAQGL 637
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089333|emb|CBI39105.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1017 bits (2629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 522/631 (82%), Positives = 573/631 (90%), Gaps = 4/631 (0%)
Query: 12 RTKSDQLVETLSAA---FKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNT 68
RTKSDQLVET A +SP S E G ++ GGTLSRKSSRR + +ASPGRAG + +NT
Sbjct: 2 RTKSDQLVETAEAVAAAMRSPTSGEATGGAESGGTLSRKSSRRSMMSASPGRAGGNSKNT 61
Query: 69 HIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPE 128
HIRKSRSAQ+KL+LDEVSSGAALSRASSASLG SFSFTGFT+PPDEI+D KPFSDDD P+
Sbjct: 62 HIRKSRSAQIKLDLDEVSSGAALSRASSASLGFSFSFTGFTVPPDEISDFKPFSDDDTPD 121
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLAL 188
D+EAG R++ + Q EPTLPIYLKF DVTYKVILKGM ++ EK+ILNGITGSVNPGEVLAL
Sbjct: 122 DLEAGMRKQ-RIQAEPTLPIYLKFKDVTYKVILKGMRTNVEKEILNGITGSVNPGEVLAL 180
Query: 189 MGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248
MGPSGSGKTTLLNLL GRL +PT GGS+TYND PYSKSLKSKIGFVTQDDVLFPHLTV+E
Sbjct: 181 MGPSGSGKTTLLNLLGGRLNQPTAGGSVTYNDQPYSKSLKSKIGFVTQDDVLFPHLTVRE 240
Query: 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308
TLTYAA LRLP TLTKQQKEKRA+DVI ELGL+RCQDTMIGGSFVRGVSGGERKRV IGN
Sbjct: 241 TLTYAARLRLPKTLTKQQKEKRAVDVIYELGLDRCQDTMIGGSFVRGVSGGERKRVSIGN 300
Query: 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368
EIIINPSLLFLDEPTSGLDSTTALRIVQML DIAEAGKTV+TTIHQPSSRLFHKFDKLIL
Sbjct: 301 EIIINPSLLFLDEPTSGLDSTTALRIVQMLHDIAEAGKTVLTTIHQPSSRLFHKFDKLIL 360
Query: 369 LGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTE 428
LGKG+LLYFGKAS M YFSSIGCSP I MNPAEFLLDLANGNL+DVS+PSEL+D+VQTE
Sbjct: 361 LGKGNLLYFGKASGTMEYFSSIGCSPLITMNPAEFLLDLANGNLNDVSIPSELEDKVQTE 420
Query: 429 NSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGAS 488
+SE +T NGKP+PA VHEYLVEAYETRVA+ EKKKLM PIP+DEE+K+KV SPKR WGAS
Sbjct: 421 HSETETRNGKPSPADVHEYLVEAYETRVADQEKKKLMIPIPIDEELKSKVCSPKREWGAS 480
Query: 489 WIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFF 548
W +QY+ILFRRG+KE RHDYFSWLR+TQV +TA ILGLLWWQS+S +PKGL+DQAGLLFF
Sbjct: 481 WWEQYSILFRRGLKERRHDYFSWLRVTQVASTATILGLLWWQSESTNPKGLQDQAGLLFF 540
Query: 549 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608
IAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYF+ARTTSDLPL+L+LPVLFL+I
Sbjct: 541 IAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFVARTTSDLPLDLILPVLFLII 600
Query: 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
VYFMAGLRM AG FFL+MLTVFL IVAAQ L
Sbjct: 601 VYFMAGLRMDAGSFFLTMLTVFLCIVAAQGL 631
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810759|ref|XP_002873263.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297319100|gb|EFH49522.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/648 (76%), Positives = 567/648 (87%), Gaps = 12/648 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSP--------VSSETAGASDGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++AA +SP V + A GGGTLSRKSSRR+
Sbjct: 1 MEKPPLASGLARTRSEQLYETVAAAIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 60
Query: 53 LTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPP 112
+ ASPGR+G +G THIRKSRSAQLKLEL+EVSSGAALSRASSASLGLSFSFTGF MPP
Sbjct: 61 MMGASPGRSGGAG--THIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 118
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSD++ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 119 EEISDSKPFSDEEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSAEKE 177
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSV+PGEVLALMGPSGSGKTTLL+LL+GR+ + + GGSITYND PYSK LKSKI
Sbjct: 178 ILTGISGSVSPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSITYNDKPYSKYLKSKI 237
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 238 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 297
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 298 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 357
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 358 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 417
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+P IVHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 418 INDISVPSELDDRVQVGNSGRETQTGKPSPTIVHEYLVEAYETRVAEQEKKKLLDPVPLD 477
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WGA W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 478 EEAKAKSTRLKRQWGAGWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 537
Query: 532 DSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLART 591
D ++P GL+DQAGLLFFIAVFW FFP+FTAIF FPQERAML+KERAADMYRLSAYFLART
Sbjct: 538 DIRTPVGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLART 597
Query: 592 TSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
TSDLPL+ +LP LFL++VYFM GLR+ PFFLS+L VFL I+AAQ L
Sbjct: 598 TSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSILIVFLCIIAAQGL 645
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437512|ref|XP_004136536.1| PREDICTED: ABC transporter G family member 22-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/644 (79%), Positives = 578/644 (89%), Gaps = 7/644 (1%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSSETAGA---SDGGGTLSRKSSRRMLTAAS 57
MEK SS LARTKSDQL+E ++AAFKSP+SS A G TLSRKSS++ LTA S
Sbjct: 1 MEK-TSSLGLARTKSDQLLEKVAAAFKSPMSSTEANGVVGESGSTTLSRKSSKQTLTAPS 59
Query: 58 PGRAGASGR--NTHIRKSRSAQLKLELDEVSSGAALSRASSASLGLSFSFTGFTMPPDEI 115
PGR SG NTHIRKSRSAQLKL+LD++ SGAALSRASSASLGLSFSFTGFT+PPDEI
Sbjct: 60 PGRGSGSGGGRNTHIRKSRSAQLKLDLDDLGSGAALSRASSASLGLSFSFTGFTLPPDEI 119
Query: 116 ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNG 175
D KPFSD+DIPED+EAGT + +FQTEPT+PI+LKF DVTYKVI+KG+ ++ EK+ILNG
Sbjct: 120 GDFKPFSDEDIPEDVEAGTC-KTRFQTEPTMPIHLKFKDVTYKVIIKGLRTNVEKEILNG 178
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235
ITG VNPGEVLALMGPSGSGKTTLLNLL GR++ T GGS+TYND PY+K LKS+IGFV
Sbjct: 179 ITGLVNPGEVLALMGPSGSGKTTLLNLLGGRIIRSTAGGSVTYNDQPYNKFLKSRIGFVM 238
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
Q+DVLFPHLTVKETL YAALLRLPNTLTK+QKEKRAIDVI ELGLERCQDTMIGGSFVRG
Sbjct: 239 QEDVLFPHLTVKETLRYAALLRLPNTLTKEQKEKRAIDVIYELGLERCQDTMIGGSFVRG 298
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
VSGGER+RV IGNEIIINPSLLFLDEPTSGLDSTTALRIVQ+L +IAEAGKTVVTTIHQP
Sbjct: 299 VSGGERRRVSIGNEIIINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTVVTTIHQP 358
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDV 415
SSRLFHKFDKLILLGKGSL+Y+GKA+EAM YF+SIGCSP IAMNPAEFLLDLANGNL DV
Sbjct: 359 SSRLFHKFDKLILLGKGSLIYYGKAAEAMNYFASIGCSPLIAMNPAEFLLDLANGNLSDV 418
Query: 416 SVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIK 475
SVPSEL+D+VQ ENSE D+ +P+P +V EYLVEAYETRVAE EK+K++ P+ LDEE+K
Sbjct: 419 SVPSELEDKVQMENSEADSRQDRPSPILVQEYLVEAYETRVAEKEKRKMLTPLTLDEELK 478
Query: 476 AKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKS 535
+KVS+ +R WGASW +QY+ILFRRGIKE RH+YFSWLRITQVLATAVILGLLWWQS+SKS
Sbjct: 479 SKVSNSRRQWGASWWEQYSILFRRGIKERRHEYFSWLRITQVLATAVILGLLWWQSESKS 538
Query: 536 PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 595
PKGL+DQAGLLFFIAVFW FFP+FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL
Sbjct: 539 PKGLQDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDL 598
Query: 596 PLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
PL+L+LP+LFL++VYFMAGLR+ A PFFL+M+TVFLSIVAAQ L
Sbjct: 599 PLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLSIVAAQGL 642
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 640 | ||||||
| TAIR|locus:2144133 | 751 | ABCG22 "ATP-binding cassette G | 0.992 | 0.845 | 0.697 | 9.2e-235 | |
| TAIR|locus:2090009 | 685 | ABCG26 "ATP-binding cassette G | 0.714 | 0.667 | 0.482 | 3.6e-120 | |
| TAIR|locus:2016089 | 662 | ABCG25 "ATP-binding casette G2 | 0.382 | 0.370 | 0.585 | 3.1e-110 | |
| TAIR|locus:2028656 | 648 | ABCG14 "ATP-binding cassette G | 0.573 | 0.566 | 0.498 | 1e-91 | |
| UNIPROTKB|B2D1N9 | 658 | ABCG2 "ATP-binding cassette su | 0.745 | 0.724 | 0.343 | 5.6e-68 | |
| UNIPROTKB|Q4GZT4 | 655 | ABCG2 "ATP-binding cassette su | 0.745 | 0.728 | 0.343 | 5.6e-68 | |
| MGI|MGI:1347061 | 657 | Abcg2 "ATP-binding cassette, s | 0.746 | 0.727 | 0.342 | 5.6e-68 | |
| RGD|631345 | 657 | Abcg2 "ATP-binding cassette, s | 0.746 | 0.727 | 0.324 | 5.1e-67 | |
| UNIPROTKB|Q9UNQ0 | 655 | ABCG2 "ATP-binding cassette su | 0.746 | 0.729 | 0.342 | 1.1e-66 | |
| UNIPROTKB|F1PG82 | 658 | ABCG2 "Uncharacterized protein | 0.770 | 0.749 | 0.330 | 1.3e-66 |
| TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2250 (797.1 bits), Expect = 9.2e-235, Sum P(2) = 9.2e-235
Identities = 452/648 (69%), Positives = 512/648 (79%)
Query: 1 MEKPVSSTSLARTKSDQLVETLSAAFKSPVSS-------ETAGAS-DGGGTLSRKSSRRM 52
MEKP ++ LART+S+QL ET++A +SP S TA A+ GGGTLSRKSSRR+
Sbjct: 3 MEKPPLASGLARTRSEQLYETVAADIRSPHGSMDANGVPATAPAAVGGGGTLSRKSSRRL 62
Query: 53 LTXXXXXXXXXXXXNTHIRKSRSAQLKLELDEVXXXXXXXXXXXXXXXXXXXXXXXTMPP 112
+ THIRKSRSAQLKLEL+EV MPP
Sbjct: 63 M---GMSPGRSSGAGTHIRKSRSAQLKLELEEVSSGAALSRASSASLGLSFSFTGFAMPP 119
Query: 113 DEIADSKPFSDDD-IPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKD 171
+EI+DSKPFSDD+ IPEDIEAG +++PKFQ EPTLPI+LKF DVTYKV++K +TSS EK+
Sbjct: 120 EEISDSKPFSDDEMIPEDIEAG-KKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKE 178
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
IL GI+GSVNPGEVLALMGPSGSGKTTLL+LL+GR+ + + GGS+TYND PYSK LKSKI
Sbjct: 179 ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTGGSVTYNDKPYSKYLKSKI 238
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
GFVTQDDVLFPHLTVKETLTYAA LRLP TLT++QK++RA+DVI ELGLERCQDTMIGG+
Sbjct: 239 GFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGLERCQDTMIGGA 298
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
FVRGVSGGERKRV IGNEIIINPSLL LDEPTSGLDSTTALR + ML DIAEAGKTV+TT
Sbjct: 299 FVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALRTILMLHDIAEAGKTVITT 358
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGN 411
IHQPSSRLFH+FDKLILLG+GSLLYFGK+SEA+ YFSSIGCSP IAMNPAEFLLDLANGN
Sbjct: 359 IHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCSPLIAMNPAEFLLDLANGN 418
Query: 412 LHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLD 471
++D+SVPSEL DRVQ NS +T GKP+PA VHEYLVEAYETRVAE EKKKL+ P+PLD
Sbjct: 419 INDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAYETRVAEQEKKKLLDPVPLD 478
Query: 472 EEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
EE KAK + KR WG W +QY ILF RG+KE RH+YFSWLR+TQVL+TAVILGLLWWQS
Sbjct: 479 EEAKAKSTRLKRQWGTCWWEQYCILFCRGLKERRHEYFSWLRVTQVLSTAVILGLLWWQS 538
Query: 532 DSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRLSAYFLART 591
D ++P GL+DQAGLLFFIAVFW QERAML+KERAADMYRLSAYFLART
Sbjct: 539 DIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERAMLNKERAADMYRLSAYFLART 598
Query: 592 TSDXXXXXXXXXXXXXXXYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
TSD YFM GLR+ PFFLSMLTVFL I+AAQ L
Sbjct: 599 TSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVFLCIIAAQGL 646
|
|
| TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1131 (403.2 bits), Expect = 3.6e-120, Sum P(2) = 3.6e-120
Identities = 226/468 (48%), Positives = 308/468 (65%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K IL GITGS PGE+LALMGPSGSGKTTLL ++ GRL + V G +TYND PYS S+K
Sbjct: 104 KHILKGITGSTGPGEILALMGPSGSGKTTLLKIMGGRLTD-NVKGKLTYNDIPYSPSVKR 162
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+IGFVTQDDVL P LTV+ETL +AA LRLP++++K+QK + +I ELGLERC+ T +G
Sbjct: 163 RIGFVTQDDVLLPQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVG 222
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
G FV+G+SGGERKR I EI+++PSLL LDEPTSGLDST+A +++ +LQ +A+AG+TV+
Sbjct: 223 GGFVKGISGGERKRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVI 282
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLAN 409
TTIHQPSSR+FH FDKL+L+ +G ++GKA E+M YFSS+ P+IAMNPAEFLLDLA
Sbjct: 283 TTIHQPSSRMFHMFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIAMNPAEFLLDLAT 342
Query: 410 GNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIP 469
G + D+S+P EL + + ++ D+ ++ +YL + Y+T + EK++
Sbjct: 343 GQVSDISLPDEL---LAAKTAQPDSEE------VLLKYLKQRYKTDLEPKEKEENHRNRK 393
Query: 470 LDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWW 529
E ++ + K++W SW Q+ IL RR +E R DYF LR+ Q L AV+LGLLWW
Sbjct: 394 APEHLQIAIQV-KKDWTLSWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWW 452
Query: 530 QSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRLSAYFLA 589
+S + + L DQ GL+F+I +FW+ E+ L KER A+MYRLS Y++
Sbjct: 453 KSKTDTEAHLRDQVGLMFYICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVC 512
Query: 590 RTTSDXXXXXXXXXXXXXXXYFMAGLRMGAGPFFLSMLTVFLSIVAAQ 637
T D YFMA F ++LT+ L + +Q
Sbjct: 513 STLCDMVAHVLYPTFFMIIVYFMAEFNRNIPCFLFTVLTILLIAITSQ 560
|
|
| TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 757 (271.5 bits), Expect = 3.1e-110, Sum P(3) = 3.1e-110
Identities = 144/246 (58%), Positives = 190/246 (77%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S+EE+ IL+G+TG ++PGE +A++GPSGSGK+TLLN ++GRL + G I ND +K
Sbjct: 77 STEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKITK 136
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ GFV QDD+L+PHLTV+ETL + ALLRLP +LT+ K + A VI+ELGL +C++
Sbjct: 137 QTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCEN 196
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344
T++G +F+RG+SGGERKRV I +E++INPSLL LDEPTSGLD+T ALR+VQ L +A
Sbjct: 197 TVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHGK 256
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
GKTVVT+IHQPSSR+F FD ++LL +G L+ GK +AMAYF S+G SP MNPA+FL
Sbjct: 257 GKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPMNPADFL 316
Query: 405 LDLANG 410
LDLANG
Sbjct: 317 LDLANG 322
|
|
| TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 196/393 (49%), Positives = 257/393 (65%)
Query: 147 PIYLKFTDVTYKVILK------GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLL 200
PI LKF +V YKV ++ G S+EK ILNGITG V PGE LA++GPSGSGKTTLL
Sbjct: 50 PITLKFEEVVYKVKIEQTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLL 109
Query: 201 NLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260
+ L GRL + T G + YN P+S +K + GFV QDDVL+PHLTV ETL + ALLRLP+
Sbjct: 110 SALGGRLSK-TFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPS 168
Query: 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
+LT+ +K + VI ELGL RC ++MIGG RG+SGGE+KRV IG E++INPSLL LD
Sbjct: 169 SLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLD 228
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
EPTSGLDSTTA RIV ++ +A G+TVVTTIHQPSSR++H FDK++LL +GS +Y+G A
Sbjct: 229 EPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAA 288
Query: 381 SEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPT 440
S A+ YFSS+G S + +NPA+ LLDLANG +P + Q E SE + K T
Sbjct: 289 SSAVEYFSSLGFSTSLTVNPADLLLDLANG------IPPD----TQKETSEQEQKTVKET 338
Query: 441 PAIVHEYLVEA-YETRVAENEKKKLMAPIPLDEEIKAKVSSPK-RNWGASWIQQYTILFR 498
+E + + + E E KA + K W +W Q+T+L +
Sbjct: 339 LVSAYEKNISTKLKAELCNAESHSY-------EYTKAAAKNLKSEQWCTTWWYQFTVLLQ 391
Query: 499 RGIKEHRHDYFSWLRITQVLATAVILGLLWWQS 531
RG++E R + F+ LRI QV++ A + GLLWW +
Sbjct: 392 RGVRERRFESFNKLRIFQVISVAFLGGLLWWHT 424
|
|
| UNIPROTKB|B2D1N9 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 172/501 (34%), Positives = 271/501 (54%)
Query: 150 LKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K G + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 39 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 97
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 98 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 157
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 158 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 217
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 218 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 277
Query: 386 YFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
YF +IG C P NPA+F LD+ NG+ V + E D + E +E + + K TP I
Sbjct: 278 YFGAIGFRCEPY--NNPADFFLDIINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI 332
Query: 444 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE 503
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 333 --EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKN 390
Query: 504 HRHDYFSWLRITQVLATA---VILGLLWWQSDSKS-PKGLEDQAGLLFFIAVFWSXXXXX 559
+ I Q++ T +++G +++ D K+ P G++++AG+LFF+
Sbjct: 391 LLGN--PQASIAQLIVTVFLGLVIGAIFY--DLKNDPAGIQNRAGVLFFLTTNQCFSSVS 446
Query: 560 XXXXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMG 618
+++ + E + YR+S+YF + SD YF+ GL+
Sbjct: 447 AVELLVVEKKLFIH-EYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPK 505
Query: 619 AGPFFLSMLTVFLSIVAAQAL 639
FF+ MLT+ + +A ++
Sbjct: 506 VEAFFIMMLTLMMVAYSASSM 526
|
|
| UNIPROTKB|Q4GZT4 ABCG2 "ATP-binding cassette sub-family G member 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 172/501 (34%), Positives = 271/501 (54%)
Query: 150 LKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V +K G + EK+IL I G + PG + A++GP+G GK++LL++L+
Sbjct: 36 LSFHNICYRVKVKTGFLLCRKTIEKEILANINGVMKPG-LNAILGPTGGGKSSLLDILAA 94
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRLP T+T
Sbjct: 95 RKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTSY 154
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR I E+I +PS+LFLDEPT+G
Sbjct: 155 EKNERINKVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIAMELITDPSILFLDEPTTG 214
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 215 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 274
Query: 386 YFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
YF +IG C P NPA+F LD+ NG+ V + E D + E +E + + K TP I
Sbjct: 275 YFGAIGFRCEPY--NNPADFFLDIINGDSSAVVLNRE--D-IGDEANETEEPSKKDTPLI 329
Query: 444 VHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE 503
E L E Y E K + D+ K S + + S+ Q + RR K
Sbjct: 330 --EKLAEFYVNSSFFKETKVELDKFSGDQRRKKLPSYKEVTYATSFCHQLKWISRRSFKN 387
Query: 504 HRHDYFSWLRITQVLATA---VILGLLWWQSDSKS-PKGLEDQAGLLFFIAVFWSXXXXX 559
+ I Q++ T +++G +++ D K+ P G++++AG+LFF+
Sbjct: 388 LLGN--PQASIAQLIVTVFLGLVIGAIFY--DLKNDPAGIQNRAGVLFFLTTNQCFSSVS 443
Query: 560 XXXXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMG 618
+++ + E + YR+S+YF + SD YF+ GL+
Sbjct: 444 AVELLVVEKKLFIH-EYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFTCITYFLLGLKPK 502
Query: 619 AGPFFLSMLTVFLSIVAAQAL 639
FF+ MLT+ + +A ++
Sbjct: 503 VEAFFIMMLTLMMVAYSASSM 523
|
|
| MGI|MGI:1347061 Abcg2 "ATP-binding cassette, sub-family G (WHITE), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 171/499 (34%), Positives = 266/499 (53%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTVEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P K G+V QDDV+ LTV+E L ++A LRLP T+ +
Sbjct: 96 KDPKGLSGDVLINGAPQPAHFKCCSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMKNHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGLE+ D+ +G F+RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLEKVADSKVGTQFIRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLVFHGPAQKALEY 275
Query: 387 FSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
F+S G C P NPA+F LD+ NG+ V + E QD + +E + KP V
Sbjct: 276 FASAGYHCEPY--NNPADFFLDVINGDSSAVMLNREEQDN-EANKTEEPSKGEKP----V 328
Query: 445 HEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEH 504
E L E Y E K + +P +E K + + + S+ Q + RR K
Sbjct: 329 IENLSEFYINSAIYGETKAELDQLPGAQEKKGTSAFKEPVYVTSFCHQLRWIARRSFKNL 388
Query: 505 RHDYFSWLRITQVLATAVILGLLWWQS--DSK-SPKGLEDQAGLLFFIAVFWSXXXXXXX 561
+ + Q++ T VILGL+ D K G++++AG+LFF+
Sbjct: 389 LGN--PQASVAQLIVT-VILGLIIGAIYFDLKYDAAGMQNRAGVLFFLTTNQCFSSVSAV 445
Query: 562 XXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAG 620
+++ + E + YR+S+YF + SD YFM GL+
Sbjct: 446 ELFVVEKKLFIH-EYISGYYRVSSYFFGKVMSDLLPMRFLPSVIFTCVLYFMLGLKKTVD 504
Query: 621 PFFLSMLTVFLSIVAAQAL 639
FF+ M T+ + A ++
Sbjct: 505 AFFIMMFTLIMVAYTASSM 523
|
|
| RGD|631345 Abcg2 "ATP-binding cassette, subfamily G (WHITE), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 162/499 (32%), Positives = 265/499 (53%)
Query: 150 LKFTDVTYKVILKG---MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L F +TY+V +K + + EK+IL+ I G + PG + A++GP+G GK++LL++L+ R
Sbjct: 37 LSFHHITYRVKVKSGFLVRKTAEKEILSDINGIMKPG-LNAILGPTGGGKSSLLDVLAAR 95
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G + N P + K G+V QDDV+ LTV+E L ++A LRLP + +
Sbjct: 96 KDPRGLSGDVLINGAPQPANFKCSSGYVVQDDVVMGTLTVRENLQFSAALRLPKAMKTHE 155
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K +R +I ELGL++ D+ +G F RG+SGGERKR IG E+I +PS+LFLDEPT+GL
Sbjct: 156 KNERINTIIKELGLDKVADSKVGTQFTRGISGGERKRTSIGMELITDPSILFLDEPTTGL 215
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386
DS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A +A+ Y
Sbjct: 216 DSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGKLMFHGPAQKALEY 275
Query: 387 FSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
F+S G C P NPA+F LD+ NG+ V + QD + +E + KP +
Sbjct: 276 FASAGYHCEPY--NNPADFFLDVINGDSSAVMLNRGEQDH-EANKTEEPSKREKP----I 328
Query: 445 HEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEH 504
E L E Y E K + +P+ ++ K + + + S+ Q + RR K
Sbjct: 329 IENLAEFYINSTIYGETKAELDQLPVAQKKKGSSAFREPVYVTSFCHQLRWIARRSFKNL 388
Query: 505 RHDYFSWLRITQVLATAV---ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXX 561
+ + Q++ T + I+G L++ + P G++++AG+ FF+
Sbjct: 389 LGN--PQASVAQLIVTVILGLIIGALYFGLKN-DPTGMQNRAGVFFFLTTNQCFTSVSAV 445
Query: 562 XXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAG 620
+++ + E + YR+S+YF + SD YFM GL+
Sbjct: 446 ELFVVEKKLFIH-EYISGYYRVSSYFFGKLVSDLLPMRFLPSVIYTCILYFMLGLKRTVE 504
Query: 621 PFFLSMLTVFLSIVAAQAL 639
FF+ M T+ + A ++
Sbjct: 505 AFFIMMFTLIMVAYTASSM 523
|
|
| UNIPROTKB|Q9UNQ0 ABCG2 "ATP-binding cassette sub-family G member 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 171/499 (34%), Positives = 271/499 (54%)
Query: 150 LKFTDVTYKVILK-GMTSSE---EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
L F ++ Y+V LK G EK+IL+ I G + PG + A++GP+G GK++LL++L+
Sbjct: 37 LSFHNICYRVKLKSGFLPCRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAA 95
Query: 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
R + G + N P + K G+V QDDV+ LTV+E L ++A LRL T+T
Sbjct: 96 RKDPSGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLATTMTNH 155
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+K +R VI ELGL++ D+ +G F+RGVSGGERKR IG E+I +PS+LFLDEPT+G
Sbjct: 156 EKNERINRVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTG 215
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS+TA ++ +L+ +++ G+T++ +IHQP +F FD L LL G L++ G A EA+
Sbjct: 216 LDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALG 275
Query: 386 YFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445
YF S G + NPA+F LD+ NG+ V++ E +D TE E + KP +
Sbjct: 276 YFESAGYHCEAYNNPADFFLDIINGDSTAVALNRE-EDFKATEIIE-PSKQDKP----LI 329
Query: 446 EYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKR-NWGASWIQQYTILFRRGIKEH 504
E L E Y E K + + E+ K K++ K ++ S+ Q + +R K
Sbjct: 330 EKLAEIYVNSSFYKETKAELHQLSGGEK-KKKITVFKEISYTTSFCHQLRWVSKRSFKNL 388
Query: 505 RHDYFSWLRITQVLATAV---ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSXXXXXXX 561
+ I Q++ T V ++G +++ + S G++++AG+LFF+
Sbjct: 389 LGN--PQASIAQIIVTVVLGLVIGAIYFGLKNDST-GIQNRAGVLFFLTTNQCFSSVSAV 445
Query: 562 XXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXXXXXXXXXXXX-XXYFMAGLRMGAG 620
+++ + E + YR+S+YFL + SD YFM GL+ A
Sbjct: 446 ELFVVEKKLFIH-EYISGYYRVSSYFLGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPKAD 504
Query: 621 PFFLSMLTVFLSIVAAQAL 639
FF+ M T+ + +A ++
Sbjct: 505 AFFVMMFTLMMVAYSASSM 523
|
|
| UNIPROTKB|F1PG82 ABCG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 173/523 (33%), Positives = 282/523 (53%)
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILK-GMT---SSEEKDILNGITGSVNPGE 184
D+ T K TE + L F ++ Y+V +K G + EK+IL I G + PG
Sbjct: 22 DLSRMTSNDLKTSTEVAV---LSFHNIYYRVKVKSGFLLGRKTVEKEILTNINGVMRPG- 77
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244
+ A++GP+G GK++LL++L+ R + G + N P + K G+V QDDV+ L
Sbjct: 78 LNAILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTL 137
Query: 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
TV+E L ++A LRLP T+T +K +R VI +LGL++ D+ +G F+RGVSGGERKR
Sbjct: 138 TVRENLQFSAALRLPTTMTSHEKNERINKVIQQLGLDKVADSKVGTQFIRGVSGGERKRT 197
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
IG E+I +P++LFLDEPT+GLDS+TA ++ +L+ ++E G+T++ +IHQP +F FD
Sbjct: 198 SIGMELITDPAILFLDEPTTGLDSSTANAVLLLLKRMSEQGRTIIFSIHQPRYSIFKLFD 257
Query: 365 KLILLGKGSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQ 422
L LL G L++ G A EA+ +F+S+G C P NPA+F LD+ NG+ V + E Q
Sbjct: 258 SLTLLAAGKLMFHGPAQEALGFFASVGYHCEPY--NNPADFFLDVINGDSSAVVLNREDQ 315
Query: 423 DRVQTENSENDTANGKPTPAIVHEYLVEAY-ETRVAENEKKKLMAPIPLDEEIKAKVSSP 481
+ + + +E + G TP I E + E Y + K++L L + K K S+
Sbjct: 316 EG-EVKVTEEPSKRG--TPFI--ERIAEFYANSDFCRKTKEELDQ---LSKSQKRKSSAF 367
Query: 482 KR-NWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAV---ILGLLWWQSDSKSPK 537
K + S+ QQ + +R K + I Q++ T + +LG +++ + S
Sbjct: 368 KEITYATSFCQQLKWISKRSFKNLLGN--PQASIAQIIVTVILGLVLGAIFYDLKNDST- 424
Query: 538 GLEDQAGLLFFIAVFWSXXXXXXXXXXXXQERAMLSKERAADMYRLSAYFLARTTSDXXX 597
G+++++G+LFF+ +++ + E + YR+S+YF + SD
Sbjct: 425 GIQNRSGVLFFLTTNQCFSSVSAVELLVVEKKLFIH-EYISGYYRVSSYFFGKLLSDLLP 483
Query: 598 XXXXXXXXXX-XXYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
YF+ GL+ FF+ M T+ + +A ++
Sbjct: 484 MRMLPSIIFTCIIYFLLGLKPVVEAFFIMMFTLMMVAYSASSM 526
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q93YS4 | AB22G_ARATH | No assigned EC number | 0.7700 | 0.9921 | 0.8455 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pg.C_LG_XVI0528 | white-brown-complex ABC transporter family (744 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 640 | |||
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-178 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-124 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-82 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-76 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-70 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-70 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 8e-62 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-60 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 6e-57 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-51 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-41 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-40 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-38 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-37 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-37 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-36 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-36 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-36 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-35 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-35 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-35 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-34 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-33 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-33 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-33 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-33 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 8e-32 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 8e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-31 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-31 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-31 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-31 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-31 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-30 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 5e-30 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-30 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-30 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-30 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-29 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-29 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-29 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-29 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 5e-29 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-29 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-29 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-28 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-28 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-28 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-28 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-27 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-27 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-27 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-27 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-27 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-27 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-27 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 9e-27 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-26 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-26 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-26 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-26 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-26 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-26 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-26 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-26 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-26 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-26 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-25 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-25 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-25 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-24 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-24 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-24 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-24 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-24 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-24 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-24 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-24 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 5e-24 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-24 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-23 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-23 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-23 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-23 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-23 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-23 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-23 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-23 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-23 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-23 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 6e-23 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-23 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-23 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 7e-23 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 8e-23 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-23 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-22 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-22 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-22 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-22 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-22 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-22 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-22 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-22 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-22 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-22 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-22 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 9e-22 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-21 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-21 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-21 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-21 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-21 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 5e-21 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 7e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 8e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-21 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-21 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-20 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-20 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-20 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-20 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-20 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-20 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-20 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-20 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-20 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 6e-20 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-20 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-20 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-19 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-19 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-19 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-19 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-19 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-18 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-18 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-18 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-18 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-18 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-18 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-18 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 6e-18 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-18 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-17 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-17 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-17 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-17 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-17 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-17 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-17 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-17 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-17 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-17 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-17 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 9e-17 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-16 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-16 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-16 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-16 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-16 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-16 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-16 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 4e-16 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-16 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-16 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-16 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 6e-16 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-16 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-16 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 8e-16 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-15 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-15 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-15 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-15 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-15 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-15 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-15 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-15 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 5e-15 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 6e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-15 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-15 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-15 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 8e-15 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 9e-15 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-14 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-14 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-14 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-14 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-14 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-14 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 4e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-14 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-14 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 7e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 8e-14 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-14 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-13 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-13 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-13 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-13 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 1e-13 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-13 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-13 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-13 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 3e-13 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-13 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-13 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-13 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 8e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 8e-13 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-12 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-12 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-12 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-12 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-12 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-12 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 3e-12 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-12 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-12 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-12 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 8e-12 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-12 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-12 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-11 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-11 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-11 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-10 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 4e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-10 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-10 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-10 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-09 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 5e-09 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-09 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 9e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-08 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 2e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-08 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-07 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-07 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-07 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-07 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 5e-07 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 4e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 4e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 5e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 7e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 9e-06 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 9e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-04 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| pfam03193 | 161 | pfam03193, DUF258, Protein of unknown function, DU | 0.001 | |
| cd01854 | 211 | cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y | 0.001 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.001 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.003 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.003 | |
| PRK01889 | 356 | PRK01889, PRK01889, GTPase RsgA; Reviewed | 0.004 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.004 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 521 bits (1343), Expect = e-178
Identities = 249/563 (44%), Positives = 349/563 (61%), Gaps = 59/563 (10%)
Query: 105 FTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGM 164
F G D SKP S D +R+ P PI LKF DV Y+V + M
Sbjct: 4 FDGVENQNDGPDRSKPPSQD---------SRDLPSLLLSSCYPITLKFMDVCYRVKFENM 54
Query: 165 TSS---------------------EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL 203
+ +E+ ILNG+TG +PGE+LA++GPSGSGK+TLLN L
Sbjct: 55 KNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNAL 114
Query: 204 SGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263
+GR+ G+I N+ +K + + GFVTQDD+L+PHLTV+ETL + +LLRLP +LT
Sbjct: 115 AGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLT 174
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
KQ+K A VI+ELGL +C++T+IG SF+RG+SGGERKRV I +E++INPSLL LDEPT
Sbjct: 175 KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPT 234
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
SGLD+T A R+V L +A+ GKT+VT++HQPSSR++ FD +++L +G L+FGK S+A
Sbjct: 235 SGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294
Query: 384 MAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAI 443
MAYF S+G SP MNPA+FLLDLANG V SE + N
Sbjct: 295 MAYFESVGFSPSFPMNPADFLLDLANGVCQTDGV------------SEREKPN------- 335
Query: 444 VHEYLVEAYETRVAENEKKKL-MAPIPLDEEIKAKVSSPKRNWG------ASWIQQYTIL 496
V + LV +Y T +A K + M+ P +S K + ++W Q++IL
Sbjct: 336 VKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSIL 395
Query: 497 FRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFF 556
+R +KE +H+ F+ LR+ QV+A A++ GL+WW SD + ++D+ GLLFFI++FW F
Sbjct: 396 LQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRD---VQDRLGLLFFISIFWGVF 452
Query: 557 PIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLR 616
P F ++F FPQERA+ KERA+ MY LS+YF+AR DLP+ L+LP +FL + Y+MAGL+
Sbjct: 453 PSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLK 512
Query: 617 MGAGPFFLSMLTVFLSIVAAQAL 639
G F L++L + ++ +Q L
Sbjct: 513 PELGAFLLTLLVLLGYVLVSQGL 535
|
Length = 659 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 380 bits (977), Expect = e-124
Identities = 168/477 (35%), Positives = 253/477 (53%), Gaps = 30/477 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227
K +L ++G PGE+LA+MG SG+GKTTL+N L+ R + GS+ N P
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 228 KSKI-GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I +V QDD+ P LTV+E L + A LR+P +TK++K +R +V+ LGL +C +T
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 287 MIG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
IG V+G+SGGERKR+ +E++ +P LLF DEPTSGLDS A +VQ+L+ +A+ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLL 405
KT++ TIHQPSS LF FDK+IL+ +G + Y G +A+ +FS +G NPA+F +
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYV 276
Query: 406 DLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAY--ETRVAENEKKK 463
+ +P +EN + I + V + V N
Sbjct: 277 QVLAV------IPG-------SENESRERIEK-----ICDSFAVSDIGRDMLVNTNLWSG 318
Query: 464 LMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKEHRHDYFS-WLRITQVLATAV 522
+ D E + + ASW Q+ L +R D +R+ Q + TA+
Sbjct: 319 KAGGLVKDSE-----NMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAI 373
Query: 523 ILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYR 582
++GL++ + KG+++ G LF +F +F I F E + +E + +YR
Sbjct: 374 LIGLIYLGQGL-TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYR 432
Query: 583 LSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
+SAYFLA+T ++LPL ++LP LF I Y+M GLR GA F + V L A +
Sbjct: 433 VSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSF 489
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 2e-82
Identities = 100/233 (42%), Positives = 139/233 (59%), Gaps = 40/233 (17%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
+ L F ++T V K S K +L ++G PGE+ A+MGPSG+GK+TLLN L+GR
Sbjct: 1 GVTLSFRNLTVTV--KSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR 58
Query: 207 LMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
V G + N P +S + IG+V QDD+L P LTV+ETL +AA LR
Sbjct: 59 RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------- 110
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
G+SGGERKRV I E++ NPSLLFLDEPTSG
Sbjct: 111 -----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
LDS++AL+++ +L+ +A+ G+T++ +IHQPSS +F FDKL+LL +G ++YFG
Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 4e-76
Identities = 97/212 (45%), Positives = 134/212 (63%), Gaps = 6/212 (2%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSKSL 227
ILN ++ V G+V+A++G SGSGKTTLL+ +SGR+ T G I +N P
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 228 -KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ + +V QDD+L P LTV+ETLTY A+LRLP + ++KR DV L T
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV----LLRDLALT 134
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
IGG+ V+G+SGGER+RV I +++ +P +L LDEPTSGLDS TAL +V L +A +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
V+ TIHQP S LF FD+++LL G ++Y G
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 248 bits (634), Expect = 3e-70
Identities = 147/517 (28%), Positives = 234/517 (45%), Gaps = 34/517 (6%)
Query: 144 PTLP-IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL 202
PT P LK ++ LK ++ DIL + G + PGE+ ++G GSG +TLL
Sbjct: 48 PTFPNALLKILTRGFR-KLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKT 106
Query: 203 LSGRL--MEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
++ V G ITY+ K + + + + DV FPHLTV ETL +AA +
Sbjct: 107 IASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCK 166
Query: 258 LPNT----LTKQQKEKRAIDVI-NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312
P +++++ K DV GL ++T +G FVRGVSGGERKRV I +
Sbjct: 167 TPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLG 226
Query: 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT-TIHQPSSRLFHKFDKLILLGK 371
+ D T GLDS TAL ++ L+ A T I+Q S + FDK+I+L +
Sbjct: 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE 286
Query: 372 GSLLYFGKASEAMAYFSSIG--CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTEN 429
G +YFG A +A YF +G C + A+FL L + + E +V
Sbjct: 287 GYQIYFGPADKAKQYFEKMGFKCPDRQTT--ADFLTSLTSPAERQIKPGYE--KKVPRTP 342
Query: 430 SENDT-----ANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRN 484
E +T + EYL E+ E ++ +A ++K + P
Sbjct: 343 QEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAK-------QSKRTRPSSP 395
Query: 485 WGASWIQQYTILFRRGIKEHRHDYFSWL-RITQVLATAVILGLLWWQSDSKSPKGLEDQA 543
+ S+ Q R + + L + + A+IL +++ K+ +
Sbjct: 396 YTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL-PKNTSDFYSRG 454
Query: 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603
G LFF A+ ++ F I + + R ++ K R +Y SA +A S++P ++ V
Sbjct: 455 GALFF-AILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESV 513
Query: 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQALY 640
+F +I+YFM R AG FF +L +F+ +A L+
Sbjct: 514 VFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLF 550
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 6e-70
Identities = 153/490 (31%), Positives = 243/490 (49%), Gaps = 79/490 (16%)
Query: 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
++TY+V +K E++ ILN + G V PG + ALMG SG+GKTTLLN+L+ R+ T G
Sbjct: 764 NLTYEVKIKK----EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERV---TTG 816
Query: 214 ----GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK 269
G N P S + IG+V Q D+ P TV+E+L ++A LR P +++K +K +
Sbjct: 817 VITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME 876
Query: 270 RAIDVINELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINP-SLLFLDEPTSGL 326
+VI L +E D ++G G G++ +RKR+ IG E++ P LLFLDEPTSGL
Sbjct: 877 YVEEVIKLLEMESYADAVVGVPGE---GLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS-LLYF---GKASE 382
DS TA I ++++ +A+ G+ ++ TIHQPS+ LF +FD+L+LL KG +YF G+ S
Sbjct: 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993
Query: 383 AM-AYFSSIGCS--PQIAMNPAEFLLDL--------ANGNLHDVSVPSELQDRVQTENSE 431
+ YF G P+ A NPAE++L++ AN + H+V S V+
Sbjct: 994 TIINYFEKHGAPKCPEDA-NPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVK----- 1047
Query: 432 NDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQ 491
NE +L A + E+ + AS
Sbjct: 1048 ---------------------------NELDRLEAELSKAEDDND--PDALSKYAASLWY 1078
Query: 492 QY-TILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIA 550
Q+ +L+R + R + + + + A+ +G +++ S +GL++Q +F
Sbjct: 1079 QFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG-TSLQGLQNQMFAVFMAT 1137
Query: 551 VFW-----SFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLF 605
V + + P F A Q +ER + + A+ A+ T ++P NLV +F
Sbjct: 1138 VLFNPLIQQYLPPFVA-----QRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIF 1192
Query: 606 LVIVYFMAGL 615
I Y+ G
Sbjct: 1193 FFIWYYPVGF 1202
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 8e-62
Identities = 92/233 (39%), Positives = 132/233 (56%), Gaps = 42/233 (18%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
L + ++ Y V +KG ++ +LN I+G V PG + ALMG SG+GKTTLL++L+GR
Sbjct: 1 GSVLTWKNLNYTVPVKG----GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR 56
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
+ G I N P K+ + G+V Q DV P+LTV+E L ++ALLR
Sbjct: 57 KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--------- 107
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
G+S +RKR+ IG E+ PS+LFLDEPTSGL
Sbjct: 108 ----------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGL 139
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378
DS A IV+ L+ +A++G+ ++ TIHQPS+ +F KFD+L+LL + G +YFG
Sbjct: 140 DSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 203 bits (519), Expect = 1e-60
Identities = 78/227 (34%), Positives = 129/227 (56%), Gaps = 15/227 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+K L+G++ V PGE+ L+GP+G+GKTTLL +L+G L++PT G I + K
Sbjct: 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG-LLKPT-SGEILVLGYDVVKEPA 74
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ +IG+V Q+ L+P LTV+E L + A L L+K++ E+R +++ GLE +
Sbjct: 75 KVRRRIGYVPQEPSLYPELTVRENLEFFARLY---GLSKEEAEERIEELLELFGLEDKAN 131
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
VR +SGG ++R+ I ++ +P LL LDEPTSGLD + I ++L+++A+ G
Sbjct: 132 K-----KVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEG 186
Query: 346 K-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
T++ + H D++I+L G ++ G E F G
Sbjct: 187 GVTILLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKG 232
|
Length = 293 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 6e-57
Identities = 145/504 (28%), Positives = 257/504 (50%), Gaps = 43/504 (8%)
Query: 144 PTLPIYLKFTDVTYKVIL----KGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTT 198
P P+ + F DV Y V + K +E++ +L +TG+ PG + ALMG SG+GKTT
Sbjct: 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTT 921
Query: 199 LLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI-GFVTQDDVLFPHLTVKETLTYAALLR 257
L+++L+GR + G I + P + ++I G+ Q+D+ P +TV+E+L Y+A LR
Sbjct: 922 LMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL 317
LP ++K++K +V+ + L+ +D ++G V G+S +RKR+ I E++ NPS++
Sbjct: 982 LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLY 376
F+DEPTSGLD+ A +++ +++ + G+TVV TIHQPS +F FD+L+L+ + G ++Y
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
Query: 377 FG----KASEAMAYFSSIGCSPQIA--MNPAEFLLDLANGNLHDVSVPSELQDRVQTENS 430
G + + + YF +I P+I NPA ++L+++ S+ +E++ +
Sbjct: 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS-------SLAAEVKLGIDFAEH 1154
Query: 431 ENDTANGKPTPAIVHEYLVEAYETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWI 490
++ + A+V K+L P P ++ + WG
Sbjct: 1155 YKSSSLYQRNKALV-----------------KELSTPPPGASDLYFATQYSQSTWG---- 1193
Query: 491 QQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSK--SPKGLEDQAGLLFF 548
Q + L+++ R ++ +R LA A+++G ++W+ +K + L G ++
Sbjct: 1194 QFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYA 1253
Query: 549 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608
+F T ER + +ERAA MY Y +A+ ++P L+ + +I
Sbjct: 1254 AVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313
Query: 609 VYFMAGLRMGAGPFFLSMLTVFLS 632
VY M A FF F S
Sbjct: 1314 VYAMVAFEWTAAKFFWFYFISFFS 1337
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 174 bits (444), Expect = 5e-51
Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 36/215 (16%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPY---S 224
+ IL +G V PGE++ ++G GSG +TLL L+ R +V G I YN PY +
Sbjct: 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ +I +V+++DV FP LTV+ETL +A RC+
Sbjct: 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFAL---------------------------RCK 111
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
G FVRG+SGGERKRV I ++ S+L D T GLDS+TAL I++ ++ +A+
Sbjct: 112 ----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADV 167
Query: 345 -GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T +++Q S ++ FDK+++L +G +Y+G
Sbjct: 168 LKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 3e-41
Identities = 75/217 (34%), Positives = 118/217 (54%), Gaps = 22/217 (10%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
E+ + L + + GE +A++GPSGSGK+TLLNLL G L +PT G + N +K L
Sbjct: 16 EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG-LDKPT-SGEVLINGKDLTK-L 72
Query: 228 KSK---------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
K IGFV Q+ L P LTV E + L+ + ++++ A +++ L
Sbjct: 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVL 129
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GLE D ++ +SGG+++RV I +I NP ++ DEPT LDS TA ++++L
Sbjct: 130 GLE---DRLL-KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185
Query: 339 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+++ E GKT++ H P L D++I L G +
Sbjct: 186 RELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 2e-40
Identities = 71/217 (32%), Positives = 114/217 (52%), Gaps = 21/217 (9%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226
E+ L G++ S+ GE +A++GPSGSGK+TLLN+L G L PT G + + SK
Sbjct: 14 GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-LDRPT-SGEVRVDGTDISKL 71
Query: 227 --------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ IGFV Q L P LT E + LL + K+++ +RA +++ +
Sbjct: 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERV 128
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL + + +SGG+++RV I + +P ++ DEPT LDS T ++++L
Sbjct: 129 GLGDRLNH-----YPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183
Query: 339 QDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+++ EAG T+V H P L D++I L G +
Sbjct: 184 RELNKEAGTTIVVVTHDP--ELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-38
Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 15/224 (6%)
Query: 159 VILKGMT-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ LKG++ + L+ ++ +V PGE LAL+GPSG GKTTLL L++G L P G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-LERPD-SGEIL 58
Query: 218 YNDHPYSKSLKSK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ + + IG V QD LFPHLTV E + + L+L + K + R +++
Sbjct: 59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELL 115
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+GLE + + +SGG+++RV + + PSLL LDEP S LD+ +
Sbjct: 116 ELVGLEG-----LLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELR 170
Query: 336 QMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ L+++ E G T + H L D++ ++ +G ++ G
Sbjct: 171 EELKELQRELGITTIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 1e-37
Identities = 143/517 (27%), Positives = 247/517 (47%), Gaps = 77/517 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSKSLKS 229
IL +G + P + L+GP SGKTTLL L+G+L +P+ V G ITYN + ++ +
Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPR 238
Query: 230 KI-GFVTQDDVLFPHLTVKETLTYAALLR-------LPNTLTKQQKE-----KRAIDVIN 276
K +++Q+DV +TVKETL ++A + L + L +++K+ + +D+
Sbjct: 239 KTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFM 298
Query: 277 E-------------------LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-L 316
+ LGL+ C+DT++G +RG+SGG++KRV G E+I+ P+
Sbjct: 299 KATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMIVGPTKT 357
Query: 317 LFLDEPTSGLDSTTALRIVQMLQDI---AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373
LF+DE ++GLDS+T +IV+ LQ I EA TV+ ++ QP+ F FD +ILL +G
Sbjct: 358 LFMDEISTGLDSSTTYQIVKCLQQIVHLTEA--TVLMSLLQPAPETFDLFDDIILLSEGQ 415
Query: 374 LLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSEND 433
++Y G + +F S G A+FL + V S+ +D+ Q N
Sbjct: 416 IVYQGPRDHILEFFESCGFKCPERKGTADFLQE----------VTSK-KDQEQYWADRN- 463
Query: 434 TANGKPTPAIVHEYLVEAYET-RVAENEKKKLMAPIPLDEEIKA-----KVSSPKRN-WG 486
KP I E +++ V + +L P + KA K S PK
Sbjct: 464 ----KPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLK 519
Query: 487 ASWIQQYTILFRRGIKEHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA--- 543
A W +++ ++ R+ + + Q++ A I ++ +++ + + ED A
Sbjct: 520 ACWDKEWLLM-------KRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT-RNEEDGALYI 571
Query: 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPV 603
G L F ++ + F F + Q + K+R + + L +P++++ V
Sbjct: 572 GALLF-SMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESV 630
Query: 604 LFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQALY 640
+++VI Y+ G A FF +L VFL A ++
Sbjct: 631 VWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIF 667
|
Length = 1470 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 4e-37
Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 21/242 (8%)
Query: 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
++ ++T + +L I+ SV GE+ AL+GP+G+GK+TLL + G
Sbjct: 2 MPMIEVENLTVSY--------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL 53
Query: 207 LMEPTVGGSITYNDHPYSKSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLT 263
L P+ G + + + +IG+V Q D FP +TVK+ + +
Sbjct: 54 LK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRR 111
Query: 264 KQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+K+K +D + +G+E +D IG +SGG+++RV + + NP LL LDEP
Sbjct: 112 LNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+G+D I +L+++ + GKTV+ H + FD++I L + L+ G E
Sbjct: 167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH-LIASGPPEE 224
Query: 383 AM 384
+
Sbjct: 225 VL 226
|
Length = 254 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-36
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 14/185 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLK 228
++ ++ +V GE+ L+G +G+GKTT L +L+G L PT G+ Y+ K+ +
Sbjct: 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPT-SGTAYINGYSIRTDRKAAR 74
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+G+ Q D LF LTV+E L + A L+ L K + ++ ++ LGL +
Sbjct: 75 QSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANK-- 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
R +SGG ++++ + +I PS+L LDEPTSGLD + I ++ ++ + G+++
Sbjct: 130 ---RARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSI 185
Query: 349 VTTIH 353
+ T H
Sbjct: 186 ILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-36
Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 54/211 (25%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+K L+ I+ +V GE+ L+GP+G+GKTTL+ ++ G L++P G I K
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG-LLKPD-SGEIKVLGKDIKKEPE 69
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+K +IG++ ++ L+ +LTV+E L
Sbjct: 70 EVKRRIGYLPEEPSLYENLTVRENLKL--------------------------------- 96
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
SGG ++R+ + ++ +P LL LDEPTSGLD + ++L+++ + G
Sbjct: 97 -----------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEG 145
Query: 346 KTVVTTIHQPS--SRLFHKFDKLILLGKGSL 374
KT++ + H RL D++ +L G +
Sbjct: 146 KTILLSSHILEEAERL---CDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 4e-36
Identities = 64/227 (28%), Positives = 117/227 (51%), Gaps = 22/227 (9%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ ++++ + L+ I+ ++ GE + ++GP+GSGK+TLL LL+G L P
Sbjct: 1 ELKNLSFSY------PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GP 53
Query: 211 TVGGSITYNDHPYSKS----LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ 265
T G + + +K L+ K+G V Q+ D F TV+E + + L ++
Sbjct: 54 T-SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEE 109
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+ E+R + + +GLE +D +SGG+++RV I + ++P +L LDEPT+G
Sbjct: 110 EIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG 164
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
LD ++++L+ + GKT++ H L D++I+L G
Sbjct: 165 LDPAGRRELLELLKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 3e-35
Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224
K IL+ ++ S+ GE+ ++GP+GSGK+TLL L+G L++P G + +
Sbjct: 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG-LLKPK-SGEVLLDGKDIASLSP 71
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K L K+ +V Q LTV E L R P+ + K +++ E LE
Sbjct: 72 KELAKKLAYVPQSPSAPFGLTVYE---LVLLGRYPHLGLFGRPSKEDEEIVEEA-LELLG 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 343
+ V +SGGER+RV I + +L LDEPTS LD + ++++L+D+ E
Sbjct: 128 LEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187
Query: 344 AGKTVVTTIHQP--SSRLFHKFDKLILLGKGSLLYFGKASEAM 384
G TVV +H ++R D LILL G ++ G E +
Sbjct: 188 KGLTVVMVLHDLNLAAR---YADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 4e-35
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 61/227 (26%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V++ K +L ++ ++ PGE +A++GPSGSGK+TLL LL RL +
Sbjct: 1 IEFKNVSFS------YPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLL-RLYD 53
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT G I + SL+ I +V QD LF T++E N L
Sbjct: 54 PT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLF-SGTIRE-----------NIL--- 97
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
SGG+R+R+ I ++ +P +L LDE TS
Sbjct: 98 -------------------------------SGGQRQRIAIARALLRDPPILILDEATSA 126
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
LD T I++ L+ +A+ GKTV+ H+ S+ D++I+L G
Sbjct: 127 LDPETEALILEALRALAK-GKTVIVIAHRLST--IRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 9e-35
Identities = 65/211 (30%), Positives = 99/211 (46%), Gaps = 52/211 (24%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------ 222
+K +LN ++ ++ GE++AL+GPSGSGK+TLL ++G L EP GSI +
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEEPD-SGSILIDGEDLTDLED 69
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
L+ +IG V QD LFPHLTV E +
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------------ 99
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
G+SGG+++RV + + ++P +L LDEPTS LD T + +L+ +
Sbjct: 100 ------------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQ 147
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
A+ G TVV H D++++L G
Sbjct: 148 AQLGITVVLVTHDLDE-AARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 70/234 (29%), Positives = 118/234 (50%), Gaps = 19/234 (8%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L+G+T S + +L G+ V GE+LA++GPSGSGK+TLL L+ G L+ P G + +
Sbjct: 3 LRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVG-LLRPD-SGEVLID 60
Query: 220 DHPYSK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
S L+ ++G + Q LF LTV E + A LR L++++ + +
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENV--AFPLREHTRLSEEEIREIVL 118
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ + +GL +D +SGG +KRV + + ++P LL DEPT+GLD +
Sbjct: 119 EKLEAVGLRGAEDLYPAE-----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173
Query: 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I +++ + + G T + H + F D++ +L G ++ G E A
Sbjct: 174 VIDDLIRSLKKELGLTSIMVTHDLDT-AFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 67/195 (34%), Positives = 109/195 (55%), Gaps = 21/195 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+ +L GI +V GEV+ ++GPSGSGK+TLL NLL E G+I + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----EEPDSGTIIIDGLKLTD 66
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ K+G V Q LFPHLTV E +T A + ++K + E+RA++++ ++G
Sbjct: 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVG 124
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D ++ +SGG+++RV I + +NP ++ DEPTS LD ++ +++
Sbjct: 125 LADKAD-----AYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 340 DIAEAGKTVVTTIHQ 354
D+AE G T+V H+
Sbjct: 180 DLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
L I+ SV GE +AL+GPSG GK+TLL +++G L PT G + + P
Sbjct: 12 GGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAG-LERPT-SGEVLVDGEP-V 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
G+V Q D L P LTV + + L+ + K + +RA +++ +GL +
Sbjct: 69 TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFE 125
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ ++ +SGG R+RV + + ++P +L LDEP S LD+ T ++ + L DI E
Sbjct: 126 N-----AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 344 AGKTVV 349
GKTV+
Sbjct: 181 TGKTVL 186
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-33
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 35/238 (14%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
T K L ++ S+NPGE +AL+GPSG+GK+TLL L+G L+EPT GS+ + +
Sbjct: 9 TYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG-LVEPT-SGSVLIDGTDIN 66
Query: 225 K-------SLKSKIGFVTQDDVLFPHLTVKET-----LTYAALLR-LPNTLTKQQKEKRA 271
K L+ +IG + Q L L+V E L + R L K++K+ RA
Sbjct: 67 KLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQ-RA 125
Query: 272 IDVINELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
+ + +GL R D + SGG+++RV I ++ P L+ DEP + L
Sbjct: 126 LAALERVGLLDKAYQRA-DQL---------SGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 327 DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
D ++ +++ +L+ I E G TV+ ++HQ L ++ D+++ L G +++ G +E
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVD--LAREYADRIVGLKDGRIVFDGPPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 3e-33
Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 17/224 (7%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ L+ +T +K L+G++ ++ PG + L+GP+G+GKTTL+ +L+ L P+ G+I
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILAT-LTPPS-SGTIR 57
Query: 218 YNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ K L+ +IG++ Q+ ++P+ TV+E L Y A L+ + ++ + R +V
Sbjct: 58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEV 114
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ + L IG +SGG R+RV I ++ +PS+L +DEPT+GLD +R
Sbjct: 115 LELVNLGDRAKKKIGS-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRF 169
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+L ++ E + V+ + H +++ +L KG L++ G
Sbjct: 170 RNLLSELGE-DRIVILSTHIVEDVESL-CNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 8e-32
Identities = 73/228 (32%), Positives = 117/228 (51%), Gaps = 27/228 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+ +L ++ ++ G+ +A++GPSGSGK+T+L LL R + + GSI + +
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLF-RFYDVS-SGSILIDGQDIREVTL 70
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELG 279
SL+ IG V QD VLF + T+ + Y T ++ + A D I +
Sbjct: 71 DSLRRAIGVVPQDTVLF-NDTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKI--MR 122
Query: 280 LERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
DT++G RG+ SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 123 FPDGYDTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA 179
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L+D++ G+T + H+ S+ DK+I+L G ++ G E +A
Sbjct: 180 LRDVS-KGRTTIVIAHRLST--IVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 8e-32
Identities = 69/193 (35%), Positives = 113/193 (58%), Gaps = 18/193 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-- 226
+K++L GI+ SV GEV+ ++GPSGSGK+TLL L+G L EP GSIT +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPD-SGSITVDGEDVGDKKD 71
Query: 227 ---LKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGLE 281
L+ K+G V Q LFPHLTV E +T A + +L K + ++A++++ ++GL
Sbjct: 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS----KAEAREKALELLEKVGLA 127
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D ++ +SGG+++RV I + ++P ++ DEPTS LD ++ +++D+
Sbjct: 128 DKAD-----AYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDL 182
Query: 342 AEAGKTVVTTIHQ 354
AE G T++ H+
Sbjct: 183 AEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 5e-31
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
++ L ++ + GE + L GPSG+GK+TLL L+ G PT G I N H S+
Sbjct: 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPT-RGKILVNGHDLSRLKGR 72
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 280
L+ +IG V QD L P TV E + LR+ + K +E +R +V++ +GL
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALP--LRV---IGKPPREIRRRVSEVLDLVGL 127
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + +SGGE++RV I I+ P++L DEPT LD + I+++ +
Sbjct: 128 KHKARA------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE 181
Query: 340 DIAEAGKTVVTTIH 353
+I G TV+ H
Sbjct: 182 EINRLGTTVLMATH 195
|
Length = 223 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 5e-31
Identities = 67/231 (29%), Positives = 116/231 (50%), Gaps = 28/231 (12%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223
K L ++ + GE + L+GP+GSGK+TLL LL+G L++PT G + +
Sbjct: 11 FRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKPT-SGEVLVDGLDT 68
Query: 224 S-----KSLKSKIGFVTQDDVLFPHL-----TVKETLTYAAL-LRLPNTLTKQQKEKRAI 272
S L+ K+G V Q+ P TV++ + + L LP +++ E+R
Sbjct: 69 SSEKSLLELRQKVGLVFQN----PDDQLFGPTVEDEVAFGLENLGLP----REEIEERVA 120
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ + +GLE D +SGG+++RV I + + P +L LDEPT+GLD
Sbjct: 121 EALELVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 333 RIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++++L+ + E GKT++ H + D++++L G +L G +E
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAE 225
|
Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 8e-31
Identities = 56/181 (30%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
++ I+ + GE + L+GPSG GKTTLL +++G +P+ G I + + K
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-FEQPS-SGEILLDGEDITDVPPEKR 77
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
IG V Q LFPH+TV+E + + L++ L K + + R + + +GLE
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEG-----FA 130
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+SGG+++RV + ++ P +L LDEP S LD+ ++ + L+++ E G T
Sbjct: 131 DRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITF 190
Query: 349 V 349
V
Sbjct: 191 V 191
|
Length = 352 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-31
Identities = 71/210 (33%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L+GI S++ GE + L+GPSG+GK+TLL L+ PT G+I N S
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-ELPT-SGTIRVNGQDVSDLRGRAIP 74
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ KIG V QD L P V E + +A L + ++ KR + +GL
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGV-PPREIRKRVPAALELVGLSHKHR 131
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ +SGGE++RV I I+ +P++L DEPT LD T I+ +L+ I +AG
Sbjct: 132 AL-----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 346 KTVVTTIHQPSSRLFHKFDK-LILLGKGSL 374
TVV H + L +I L +G L
Sbjct: 187 TTVVVATH--AKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 9e-31
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 20/205 (9%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIGF 233
EV + G SG+GK+TLL ++G L +P GG+I N S K KIG
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAG-LEKPD-GGTIVLNGTVLFDSRKKINLPPQQRKIGL 79
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
V Q LFPHL V+E L + L R N + ++ +++ LGL+ + +
Sbjct: 80 VFQQYALFPHLNVRENLAFG-LKRKRNREDRISVDE----LLDLLGLDH-----LLNRYP 129
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGGE++RV + + P LL LDEP S LD L+++ L+ I + V +
Sbjct: 130 AQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVT 189
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFG 378
S + D+++++ G L Y G
Sbjct: 190 HDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-30
Identities = 54/189 (28%), Positives = 94/189 (49%), Gaps = 19/189 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS------- 224
L+ ++ S+ GE L L+G SGSGK+TL + G + GSI ++
Sbjct: 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILG--LLKPTSGSIIFDGKDLLKLSRRLR 77
Query: 225 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 281
K + +I V QD L P +T+ E + + + K+ +++ + ++ +GL E
Sbjct: 78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPE 136
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+ + +SGG+R+RV I + +NP LL DEPTS LD + +I+ +L+ +
Sbjct: 137 EVLN-----RYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
Query: 342 AEA-GKTVV 349
E G T++
Sbjct: 192 QEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 4e-30
Identities = 78/284 (27%), Positives = 136/284 (47%), Gaps = 34/284 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
K ++ + ++ GE L L+GPSGSGKTT L +++ RL+EPT G I + S
Sbjct: 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN-RLIEPT-SGEILIDGEDISDLDP 70
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 282
L+ KIG+V Q LFPHLTV E + +P L K++ +KRA ++++ +GL+
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIAT-----VPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+ + +SGG+++RV + + +P +L +DEP LD T ++ + ++++
Sbjct: 126 SE---YADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 342 AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
E GKT+V H D++ ++ G ++ + E I NPA
Sbjct: 183 KELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPDE-------------ILANPA 228
Query: 402 -EFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIV 444
+F+ D + + + S + E A+G+P
Sbjct: 229 NDFVEDFFGESERGLRLLSLVSVADAVRRGE--PADGEPLLEGF 270
|
Length = 309 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 5e-30
Identities = 65/211 (30%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L ++ V PGE LA++GP+G+GK+TLL + G L++PT G SI P K K +I
Sbjct: 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG-LLKPTSG-SIRVFGKPLEKERK-RI 70
Query: 232 GFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTM 287
G+V Q D FP ++V++ + + +K +D + +GL D
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
IG +SGG+++RV + ++ +P LL LDEP +G+D T I ++L+++ G T
Sbjct: 130 IGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMT 184
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
++ H + FD+++LL + ++ G
Sbjct: 185 ILVVTHDLGL-VLEYFDRVLLLNRT-VVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 5e-30
Identities = 74/239 (30%), Positives = 121/239 (50%), Gaps = 18/239 (7%)
Query: 153 TDVTYKVILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211
+ ++G+T S ++ IL+G+ V GE+LA++G SGSGK+TLL L+ G L+ P
Sbjct: 3 ASPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILG-LLRPD 61
Query: 212 VGGSITYNDHPYSK-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264
G I + + ++ ++G + Q LF LTV E + + LR L +
Sbjct: 62 -KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF--PLREHTKLPE 118
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+ + + +GL + +SGG RKRV + I ++P LLFLDEPTS
Sbjct: 119 SLIRELVLMKLELVGL----RGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTS 174
Query: 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
GLD +A I ++++++ +A G TV+ H S L D++ +L G ++ G E
Sbjct: 175 GLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 6e-30
Identities = 75/226 (33%), Positives = 117/226 (51%), Gaps = 21/226 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
E+K +L I S+ PGE +A++GP+G+GKTTL+NLL R +P G I +
Sbjct: 14 EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLM-RFYDPQ-KGQILIDGIDIRDIS 71
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
KSL+S IG V QD LF T+ E + + + KE A D I +L G
Sbjct: 72 RKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGY- 129
Query: 282 RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
DT++G G +S GER+ + I ++ +P +L LDE TS +D+ T I + L+
Sbjct: 130 ---DTVLGENGG---NLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ + G+T + H+ S+ DK+++L G ++ G E +A
Sbjct: 184 KLMK-GRTSIIIAHRLSTIKNA--DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 6e-30
Identities = 59/209 (28%), Positives = 108/209 (51%), Gaps = 20/209 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK 225
+K IL+ + ++ G++ A++G SGSGK+TLLN++ L+E G + N P +
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG--LLEKFDSGQVYLNGQETPPLNS 67
Query: 226 SLKS-----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
S K+G++ Q+ L + TV+E L + L+K++K ++ + + ++GL
Sbjct: 68 KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGL 124
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
I +SGGE++RV + I+ P L+ DEPT LD ++ +L +
Sbjct: 125 NLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILL 369
+ + GKT++ H P + + D++I L
Sbjct: 180 LNDEGKTIIIVTHDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 2e-29
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 28/224 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++L + + GE + L+GPSG GK+TLL +++G L EPT G I + +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPT-SGEILIDGRDVTDLPP 72
Query: 229 SK--IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----R 282
K I V Q+ L+PH+TV E + + LR + K + +KR +V LGLE R
Sbjct: 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+SGG+R+RV + ++ P + LDEP S LD LR V M +I
Sbjct: 130 K---------PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLD--AKLR-VLMRSEIK 177
Query: 343 EAGKTVVTTI----HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + + TT H + D+++++ G + G E
Sbjct: 178 KLHERLGTTTIYVTHDQVEAMT-LADRIVVMNDGRIQQVGTPLE 220
|
Length = 338 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
L + +N GE++A++GPSG+GK+TLL L+G L++PT G I +N +K
Sbjct: 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG-LVDPT-SGEILFNGVQITKLKGK 74
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
L+ IG + Q L P L+V E + L +K+ K +A+D +
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDK-AQALDALE 133
Query: 277 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+G+ R T+ SGG+++RV I ++ P ++ DEP + LD +A
Sbjct: 134 RVGILDKAYQRA-STL---------SGGQQQRVAIARALVQQPKIILADEPVASLDPESA 183
Query: 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
+++ +L+DI + G TV+ +HQ + D++I L G +++ G ASE
Sbjct: 184 KKVMDILKDINQEDGITVIVNLHQVDLAKKY-ADRIIGLKAGRIVFDGPASELTDEA 239
|
Length = 258 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 4e-29
Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 20/210 (9%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225
L+ ++ + GE L L GPSG+GKTTLL LL G L P+ G + ++
Sbjct: 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-PS-RGQVRIAGEDVNRLRGRQ 73
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ +IG V QD L P TV E + +R +++ ++R + ++GLE
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHK 130
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
D F +SGGE++RV I I+ +P LL DEPT LD + RI+ +L+ + +
Sbjct: 131 ADA-----FPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK 185
Query: 344 AGKTVVTTIHQPS-SRLFHKFDKLILLGKG 372
G TV+ H S ++I+L G
Sbjct: 186 RGTTVIVATHDLSLVDRVAH--RVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 74/245 (30%), Positives = 123/245 (50%), Gaps = 27/245 (11%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +VT++ + +L I+ + GE +AL+GPSGSGK+TL+NL+ R +
Sbjct: 1 VEFKNVTFRY------PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYD 53
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H SL+ +IG V+QD LF + TV E + Y + +
Sbjct: 54 VD-SGRILIDGHDVRDYTLASLRRQIGLVSQDVFLF-NDTVAENIAYGRPGATREEVEEA 111
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDE 321
+ A + I EL G DT+IG RGV SGG+R+R+ I ++ +P +L LDE
Sbjct: 112 ARAANAHEFIMELPEGY----DTVIG---ERGVKLSGGQRQRIAIARALLKDPPILILDE 164
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381
TS LD+ + + L+ + + +T H+ S+ D++++L G ++ G
Sbjct: 165 ATSALDTESERLVQAALERLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERGTHE 221
Query: 382 EAMAY 386
E +A
Sbjct: 222 ELLAQ 226
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 35/233 (15%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
K L I ++NPGE +A++GPSG+GK+TLL ++ RL+EP+ GSI +K
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCIN-RLVEPS-SGSILLEGTDITKLRGK 72
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
L+ +IG + Q L LTV E + + L P +++ KE RA+ +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKE-RALSALE 131
Query: 277 ELGLE-----RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+GL R D + SGG+++RV I + P L+ DEP + LD T+
Sbjct: 132 RVGLADKAYQRA-DQL---------SGGQQQRVAIARALAQQPDLILADEPIASLDPKTS 181
Query: 332 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+++ L+ I E G TV+ +HQ L K+ D+++ L G +++ G SE
Sbjct: 182 KQVMDYLKRINKEDGITVIINLHQVD--LAKKYADRIVGLKAGEIVFDGAPSE 232
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 5e-29
Identities = 63/179 (35%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I SV GE +A++GPSG GK+TLL L++G L +PT G + + P I
Sbjct: 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-LEKPT-SGEVLLDGRP-VTGPGPDI 74
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
G+V Q+D L P LTV + + LR +K + +RA +++ +GL +D
Sbjct: 75 GYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFED-----K 126
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVV 349
+ +SGG R+RV I + P LL LDEP LD+ T + L + E KTV+
Sbjct: 127 YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 5e-29
Identities = 77/270 (28%), Positives = 128/270 (47%), Gaps = 36/270 (13%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
D ++E ++F +V++ +K +L I+ S+ PGE
Sbjct: 310 DEEPEVEDPPDPLKDTIGS------IEFENVSFSY-------PGKKPVLKDISFSIEPGE 356
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVL 240
+A++GPSGSGK+TL+ LL RL +PT G I + SL+ +IG V+QD +L
Sbjct: 357 KVAIVGPSGSGKSTLIKLLL-RLYDPT-SGEILIDGIDIRDISLDSLRKRIGIVSQDPLL 414
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-----DVINELGLERCQDTMIGGSFVRG 295
F T++E + T ++ E+ + I L DT++G V
Sbjct: 415 F-SGTIRENIALGR-----PDATDEEIEEALKLANAHEFIAN--LPDGYDTIVGERGVN- 465
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGG+R+R+ I ++ NP +L LDE TS LD+ T ++Q G+T + H+
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTET-EALIQDALKKLLKGRTTLIIAHRL 524
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
S+ D++I+L G ++ G E +A
Sbjct: 525 ST--IKNADRIIVLDNGRIVERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 6e-29
Identities = 74/261 (28%), Positives = 125/261 (47%), Gaps = 40/261 (15%)
Query: 124 DDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPG 183
D PE T P L ++F +V+++ ++ +L ++ + PG
Sbjct: 451 DTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYG------PDDPPVLEDLSLEIPPG 499
Query: 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239
E +A++G SGSGK+TLL LL G +P G I + + SL+ ++G+V QD
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGLY-KPQQ-GRILLDGVDLNDIDLASLRRQVGYVLQDPF 557
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DVINEL--GLERCQDTMIG--GS 291
LF +++E + P ++ E + + I L G DT +G G+
Sbjct: 558 LF-SGSIRENIALGN----PEATDEEIIEAAQLAGAHEFIENLPMGY----DTPVGEGGA 608
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+SGG+R+R+ + ++ P +L LDE TS LD T I+Q L I + G+TV+
Sbjct: 609 ---NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIII 664
Query: 352 IHQPSSRLFHKFDKLILLGKG 372
H+ S+ D++I+L +G
Sbjct: 665 AHRLST--IRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 9e-29
Identities = 62/189 (32%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSL 227
L+ ++ SV PGE+ L+GP+G+GKTTL NL+SG L PT GS+ ++ P +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPT-SGSVLFDGEDITGLPPHEIA 73
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-------TKQQKEKRAIDVINELGL 280
+ IG Q LFP LTV E + AA R + L +++ +RA +++ +GL
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL 133
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
D G +S G+++R+ I + +P LL LDEP +GL+ + +++++
Sbjct: 134 ADLADRPAG-----ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE 188
Query: 341 IAEAGKTVV 349
+ E G TV+
Sbjct: 189 LRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-28
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 491 QQYTILFRRGIKEHRHD--YFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFF 548
Q L +R D R+ Q L A++ G ++ D+ G ++ GLLFF
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT--SLGGLNRPGLLFF 58
Query: 549 IAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608
+F +F + F +ER +L +E A+ +Y SAY LA+ +LP++L+ ++FL+I
Sbjct: 59 SILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLI 118
Query: 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639
VYFM GL + FFL +L + L+ +AA L
Sbjct: 119 VYFMVGLPVSR--FFLFLLVLLLTALAASGL 147
|
Length = 210 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-28
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 50/215 (23%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
+ +L+ ++ S+ GE++ ++GP+G+GK+TLL L+G L++P+ G I + +
Sbjct: 11 GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAG-LLKPS-SGEILLDGKDLASLSP 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K L KI +V Q L L L ++ NEL
Sbjct: 69 KELARKIAYVPQ------------ALELLGLAHL--------ADRP----FNEL------ 98
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-E 343
SGGER+RV + + P +L LDEPTS LD + ++++L+ +A E
Sbjct: 99 ------------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
GKTVV +H + + D++ILL G ++ G
Sbjct: 147 RGKTVVMVLHDLNLAARY-ADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 70/257 (27%), Positives = 123/257 (47%), Gaps = 23/257 (8%)
Query: 134 TRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSG 193
K + PI + ++++ + K L+ + ++ G++ AL+G SG
Sbjct: 305 PGSGEKAEVANEPPIEISLENLSF-------RYPDGKPALSDLNLTIKAGQLTALVGASG 357
Query: 194 SGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKET 249
+GK+TLLNLL G + PT G I N ++ + +I +V+Q+ LF T++E
Sbjct: 358 AGKSTLLNLLLG-FLAPT-QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIREN 414
Query: 250 LTYAALLRLPNTLTKQQKEKRAIDVIN-ELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308
+ A + + ++ + GL DT+IG G+SGG+ +R+ +
Sbjct: 415 ILLARPDASDEEIIAALDQAGLLEFVPKPDGL----DTVIGEG-GAGLSGGQAQRLALAR 469
Query: 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368
++ SLL LDEPT+ LD+ T I+Q LQ++A+ KTV+ H+ D++++
Sbjct: 470 ALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLEDAA--DADRIVV 526
Query: 369 LGKGSLLYFGKASEAMA 385
L G L+ G E
Sbjct: 527 LDNGRLVEQGTHEELSE 543
|
Length = 559 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 6e-28
Identities = 56/185 (30%), Positives = 98/185 (52%), Gaps = 20/185 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
IL G++ +V GE++AL+G +G+GKTTLL + G + P GSI ++ +
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG--LLPPRSGSIRFDGRDITGLPPHER 72
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 284
++ IG+V + +FP LTV+E L A R ++ K K ++ + EL L+ +
Sbjct: 73 ARAGIGYVPEGRRIFPELTVEENLLLGAYAR------RRAKRKARLERVYELFPRLKERR 126
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 127 KQL-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 345 GKTVV 349
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 67/229 (29%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKS 226
LN ++ + GE L ++G SGSGK+TL LL+G L +P+ G SI + P +K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAG-LEKPSSG-SILLDGKPLAPKKRAKA 79
Query: 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ V QD L P TV L+ P+ L+K Q+ R ++++++GL
Sbjct: 80 FYRPVQMVFQDPYSSLNPRRTVGRILSEPLR---PHGLSKSQQ--RIAELLDQVGL---- 130
Query: 285 DTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
SF+ +SGG+R+R+ I +I P LL LDEPTS LD + +I+ +L +
Sbjct: 131 ----PPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE 186
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
+ + I + + H D++ ++ G ++ G E +++ S
Sbjct: 187 LKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSH 235
|
Length = 252 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-27
Identities = 62/206 (30%), Positives = 111/206 (53%), Gaps = 15/206 (7%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
L+ I+ SV GE+ L+GP+G+GKTT + ++ G ++ P G + ++ P + +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG-IILPD-SGEVLFDGKPLDIAAR 69
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++IG++ ++ L+P + V + L Y A L+ L K++ +R + + L L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYAN--- 123
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V +S G +++V +I +P LL LDEP SGLD + +++++A AGKTV
Sbjct: 124 --KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTV 181
Query: 349 VTTIHQPSS--RLFHKFDKLILLGKG 372
+ + HQ L D+++LL KG
Sbjct: 182 ILSTHQMELVEEL---CDRVLLLNKG 204
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-27
Identities = 65/219 (29%), Positives = 111/219 (50%), Gaps = 26/219 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 230
L ++ V G+ ++GP+GSGK+ LL ++G ++P G I N D K
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAG-FIKPD-SGKILLNGKDITNLPPEKRD 72
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
I +V Q+ LFPH+TV + + Y R + K++ E++ +++ LG++ +
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLKKRKVD---KKEIERKVLEIAEMLGIDHLLN----- 124
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGGE++RV I +++NP +L LDEP S LD T ++ + L+ I + + VT
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK--EFGVT 182
Query: 351 TIHQPSSRLFHKF-------DKLILLGKGSLLYFGKASE 382
+H + H F DK+ ++ G L+ GK E
Sbjct: 183 VLH-----VTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 2e-27
Identities = 68/217 (31%), Positives = 110/217 (50%), Gaps = 23/217 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKS 226
K +L I +NPGE++ L GPSGSGKTTLL L+ G + E GS+ +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE----GSLKVLGQELYGA 72
Query: 227 -------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ IG++ Q L LT ++ + A L L L+ Q+ +RA ++ +G
Sbjct: 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D + +SGG+++RV I ++ P L+ DEPT+ LDS + +V+++Q
Sbjct: 131 LGDHLD-----YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185
Query: 340 DIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
+A E G T++ H R+ D+++ + G LL
Sbjct: 186 KLAREQGCTILIVTHDN--RILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-27
Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 27/225 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
IL G++ ++ PG+ +AL+G SG GK+T+++LL R +PT G I + + L
Sbjct: 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLE-RFYDPTS-GEILLDGVDIRDLNLRWL 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINEL--GLER 282
+S+IG V+Q+ VLF T+ E + Y + T + ++ + D I L G
Sbjct: 76 RSQIGLVSQEPVLFD-GTIAENIRYG---KPDATDEEVEEAAKKANIHDFIMSLPDGY-- 129
Query: 283 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + + + L
Sbjct: 130 --DTLVGE---RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR 184
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ G+T + H+ S+ D + +L G ++ G E MA
Sbjct: 185 AMK-GRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 5e-27
Identities = 61/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKSKIG 232
++ GE+ L+G +G+GKTTLL +++ L+ P G +T + ++ KIG
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIAT-LLIPD-SGKVTIDGVDTVRDPSFVRRKIG 78
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
+ + L+ LT +E L Y A L N L++++ + R ++ L L D
Sbjct: 79 VLFGERGLYARLTARENLKYFARL---NGLSRKEIKARIAELSKRLQLLEYLDRR----- 130
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
V S G +++V I ++ +PS+L LDEPTSGLD T + ++ + G+ V+ +
Sbjct: 131 VGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS 190
Query: 353 H--QPSSRLFHKFDKLILLGKGSLLYFG 378
H Q L D++I+L KG ++ G
Sbjct: 191 HIMQEVEAL---CDRVIVLHKGEVVLEG 215
|
Length = 245 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 7e-27
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS------ 226
++ ++ + GE L L+G SGSGK+TL +L+G L+ P+ GSI ++ +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAG-LLPPS-SGSIIFDGQDLDLTGGELRR 364
Query: 227 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ ++ F L P +TV + L LR+ + ++ R +++ +GL
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP-- 420
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ +SGG+R+RV I + + P LL LDEP S LD + +++ +L+D+ E
Sbjct: 421 --EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 344 AGKTVV 349
G T +
Sbjct: 479 LGLTYL 484
|
Length = 539 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 9e-27
Identities = 57/192 (29%), Positives = 100/192 (52%), Gaps = 17/192 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHP-YSKSL 227
++G++ + GE+L ++G SGSGK+ L + G L +P VGG I ++ S S
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 228 K-------SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
K +I + QD L P +T+ + + L L+K++ ++RAI+++ +
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA-EVLRLHGKGLSKKEAKERAIELLELV 138
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
G+ S+ +SGG R+RV I + +NP LL DEPT+ LD T +I+ +L
Sbjct: 139 GIPD--PERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 339 QDIA-EAGKTVV 349
+++ E G ++
Sbjct: 197 KELQREKGTALI 208
|
Length = 316 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPYSKSL 227
L+ I+ + GE++AL+GPSG+GK+TLL +++G L P G I N D
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAG-LETPD-AGRIRLNGRVLFDVSNLAVR 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
K+GFV Q LFPH+TV + + + +R + + + + EL L Q
Sbjct: 76 DRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR-----VEEL-LRLVQLEG 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 346
+ + +SGG+R+RV + + + P +L LDEP LD+ + + L+ + G
Sbjct: 130 LADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
T V H L D++++L +G +
Sbjct: 190 TTVFVTHDQEEALEL-ADRVVVLNQGRI 216
|
Length = 345 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-26
Identities = 64/221 (28%), Positives = 115/221 (52%), Gaps = 16/221 (7%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PYS 224
+ ++NG++ SV GE++ L+GP+G+GKTT ++ G L++P G I + P
Sbjct: 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVG-LVKPD-SGKILLDGQDITKLPMH 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K + IG++ Q+ +F LTV+E + A L L+K+++E++ +++ E + +
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENI-LAVLEIRG--LSKKEREEKLEELLEEFHITHLR 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ S +SGGER+RV I + NP L LDEP +G+D I ++++ + +
Sbjct: 128 KSK-ASS----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR 182
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G V+ T H D+ ++ +G +L G E A
Sbjct: 183 GIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 65/202 (32%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
L ++ ++ GE++ ++GPSG GKTTLLNL++G + P GSI N ++
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTP-SRGSIQLNGRRIEGP-GAER 76
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
G V Q++ L P L V + + + LR + K Q+ + A ++ +GLE + I
Sbjct: 77 GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIW-- 131
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVT 350
+SGG R+RV I + + P LL LDEP LD+ T ++ ++L D+ + GK V+
Sbjct: 132 ---QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLL 188
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H LF +L++L G
Sbjct: 189 ITHDIEEALFLA-TRLVVLSPG 209
|
Length = 259 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-26
Identities = 66/220 (30%), Positives = 114/220 (51%), Gaps = 31/220 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+E L+ ++ ++ GE +A++G GSGK+TLL LL+G L +PT GS+ + +
Sbjct: 15 QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPT-SGSVLLDGTDIRQLD 72
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-- 281
L+ IG+V QD LF + T+++ +T A L ++R + G+
Sbjct: 73 PADLRRNIGYVPQDVTLF-YGTLRDNITLGAPL---------ADDERILRAAELAGVTDF 122
Query: 282 -----RCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
D IG G RG+SGG+R+ V + ++ +P +L LDEPTS +D + R+
Sbjct: 123 VNKHPNGLDLQIGERG---RGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+ L+ + KT++ H+PS L D++I++ G +
Sbjct: 180 KERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-26
Identities = 63/211 (29%), Positives = 113/211 (53%), Gaps = 19/211 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+K +L+ I+ V GE+ +GP+G+GKTT + ++ G L++P G IT++ Y K+++
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPD-SGEITFDGKSYQKNIE 69
Query: 229 --SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQD 285
+IG + + +P+LT +E L A L K+ ID V++ +GL+
Sbjct: 70 ALRRIGALIEAPGFYPNLTARENLRLLARLL--------GIRKKRIDEVLDVVGLKD--- 118
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V+G S G ++R+ I ++ NP LL LDEPT+GLD + +++ + + G
Sbjct: 119 --SAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376
TV+ + H S + D++ ++ KG L+
Sbjct: 177 ITVLISSHL-LSEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 67/211 (31%), Positives = 114/211 (54%), Gaps = 18/211 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT---YNDHPYSKSLKS 229
++G++ +V PGEV L+GP+G+GKTT L +L+G L+EP G T ++ +
Sbjct: 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAG-LLEPD-AGFATVDGFDVVKEPAEARR 78
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
++GFV+ L+ LT +E L Y A L L + R ++ + LG+E D +G
Sbjct: 79 RLGFVSDSTGLYDRLTARENLEYFAGL---YGLKGDELTARLEELADRLGMEELLDRRVG 135
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
G S G R++V I ++ +P +L LDEPT+GLD + + ++ + GK ++
Sbjct: 136 G-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 350 TTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
+ H Q RL D++++L +G ++Y G
Sbjct: 191 FSTHIMQEVERL---CDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 4e-26
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 25/221 (11%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ +L G++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N S
Sbjct: 13 EGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPT-SGEVLFNGQSLS 70
Query: 225 KSLKSKI--------GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K ++ GF+ Q L P T E + L+ + ++ ++RA +++
Sbjct: 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLE 127
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
++GLE + +SGGER+RV I ++ PSL+ DEPT LD+ A I
Sbjct: 128 KVGLEHRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFD 182
Query: 337 MLQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSL 374
++ ++ T VVT H L K D+++ + G L
Sbjct: 183 LMLELNRELNTSFLVVT--HDL--ELAKKLDRVLEMKDGQL 219
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 5e-26
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 23/233 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYN--- 219
T + ++ V PGE+L ++G SGSGK+TL L G L E G + +
Sbjct: 17 TDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRD 76
Query: 220 -----DHPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
+ K +I + QD L P +T+ + + LRL ++ + KRA+
Sbjct: 77 LLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR--EALRLHGKGSRAEARKRAV 134
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+++ ++GL D + +SGG R+RV I + + P LL DEPT+ LD TT
Sbjct: 135 ELLEQVGLP---DPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 333 RIVQMLQDI-AEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASE 382
+I+ +L+D+ E G V+ H + L D+++++ KG ++ G E
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAEL---ADRVVVMYKGEIVETGPTEE 241
|
Length = 539 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-26
Identities = 59/191 (30%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 226
L+ ++ + GE+ ++G SG+GK+TLL L++ L PT GS+ + S++
Sbjct: 22 LDDVSLEIPKGEIFGIIGYSGAGKSTLLRLIN-LLERPT-SGSVFVDGQDLTALSEAELR 79
Query: 227 -LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ KIG + Q L TV E + + L L K + ++R +++ +GL D
Sbjct: 80 QLRQKIGMIFQHFNLLSSRTVFENVAFP--LELAGV-PKAEIKQRVAELLELVGLSDKAD 136
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
+ +SGG+++RV I + NP +L DE TS LD T I+++L+DI E
Sbjct: 137 -----RYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL 191
Query: 345 GKTVVTTIHQP 355
G T+V H+
Sbjct: 192 GLTIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
E IL G+ V GE +A++GPSGSGK+TLL +L+G L +P+ G + P
Sbjct: 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAG-LDDPS-SGEVRLLGQPLH 75
Query: 225 K-------SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K +L+++ +GFV Q L P+LT E + LR + + A ++
Sbjct: 76 KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELR--GESSADSRA-GAKALLE 132
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
+GL + + +SGGE++RV + P +LF DEPT LD T +I
Sbjct: 133 AVGLGKRLT-----HYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIAD 187
Query: 337 MLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+L + E G T+V H P L + D+ + L G L
Sbjct: 188 LLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRL 224
|
Length = 228 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-25
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 26/228 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 225
+L+GI V PGEV+A++GPSGSGKTTLL ++ L+E G+I D S+
Sbjct: 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCIN--LLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +GFV Q+ LFPH TV E + + + K++ RA +++ ++G
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPV--IVKGEPKEEATARARELLAKVG 133
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L + S+ R +SGG+++RV I + + P ++ DEPTS LD ++ ++
Sbjct: 134 LAGKET-----SYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 340 DIAEAGKTVVTTIHQPSSRLFHK--FDKLILLGKGSLLYFGKASEAMA 385
+A+ +T+V H+ S F + D+ I + +G ++ G A A
Sbjct: 189 QLAQEKRTMVIVTHEMS---FARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 25/227 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K L I+ + GE+ AL+GPSG GK+TLL N L+ + G + +
Sbjct: 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYD 71
Query: 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ ++G V Q FP ++ + + Y L K K +D E
Sbjct: 72 LDVDVLELRRRVGMVFQKPNPFP-GSIYDNVAYGLRLH-------GIKLKEELDERVEEA 123
Query: 280 LERCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + D + G+SGG+++R+C+ + P +L LDEPTS LD + +I ++
Sbjct: 124 LRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEEL 183
Query: 338 LQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ ++ + V+ T + Q ++R+ D+ L G L+ FG +
Sbjct: 184 IAELKKEYTIVIVTHNMQQ-AARV---ADRTAFLLNGRLVEFGPTEQ 226
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 67/223 (30%), Positives = 118/223 (52%), Gaps = 19/223 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+K ++ I+ V PGE+ L+GP+G+GKTT ++ G L+EPT G IT+N P S+ +K
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILG-LLEPT-EGEITWNGGPLSQEIK 71
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
++IG++ ++ L+P +TV++ L Y A L K + + LER +
Sbjct: 72 NRIGYLPEERGLYPKMTVEDQLKYLAEL-------KGMPKAEIQKKLQAW-LERLEIVGK 123
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTALRIVQMLQDIAEAGK 346
++ +S G ++++ + +I P LL LDEP SGLD + L+ + ++ E G
Sbjct: 124 KTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLK--DAIFELKEEGA 181
Query: 347 TVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
T++ + H+ L D+L++L KG + +G + F
Sbjct: 182 TIIFSSHRMEHVEEL---CDRLLMLKKGQTVLYGTVEDIRRSF 221
|
Length = 300 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 22/214 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 236
+V GE++A++GPSG+GK+TLLNL++G E G I N DH S + + + Q
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAG--FETPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV + + L P L +Q+EK ++GL + G
Sbjct: 79 ENNLFAHLTVAQNI---GLGLSPGLKLNAEQREKVE-AAAAQVGLAGFLKRLPG-----E 129
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 351
+SGG+R+RV + ++ +L LDEP S LD ALR +ML ++ E T++
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALR-AEMLALVSQLCDERKMTLLMV 186
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H P D+++ L G + G E ++
Sbjct: 187 THHPED-AARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 1e-24
Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 19/221 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-----HPYSKS 226
L G++ V GE++AL+G +G+GKTTLL + G + G I ++ P +
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMG--LVRPRSGRIIFDGEDITGLPPHER 75
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQ 284
+ I +V + +FP LTV+E L A R ++ ++R ++ + EL L+ +
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLGAYAR-----RDKEAQERDLEEVYELFPRLKERR 130
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ G+ SGGE++ + I ++ P LL LDEP+ GL I + ++++ +
Sbjct: 131 NQR-AGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G + + Q + D+ +L G ++ G A+E +A
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 2e-24
Identities = 71/270 (26%), Positives = 128/270 (47%), Gaps = 35/270 (12%)
Query: 130 IEAGTRERPKFQTE----PTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEV 185
+ ++P+ T L+ +V++ ++ L ++ GE
Sbjct: 313 LNDILDQKPEVTFPDEQTATTGQALELRNVSFTY------PGQQTKALKNFNLTLAQGEK 366
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLF 241
+A++G SGSGK+TLL LL+G GSIT N + ++L+ I +TQ LF
Sbjct: 367 VAILGRSGSGKSTLLQLLAGAW--DPQQGSITLNGVEIASLDEQALRETISVLTQRVHLF 424
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV------RG 295
T+++ L A P+ ++ + ++GLE+ ++ G R
Sbjct: 425 SG-TLRDNLRLAN----PDASDEE-----LWAALQQVGLEKLLESAPDGLNTWLGEGGRR 474
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
+SGGER+R+ + ++ + L LDEPT GLD T +++ +L + AE GKT++ H+
Sbjct: 475 LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHR- 532
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
R + D++I+L G ++ G +E +A
Sbjct: 533 -LRGLERMDRIIVLDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 67/221 (30%), Positives = 117/221 (52%), Gaps = 20/221 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228
+N + + GE L L+GPSGSGKTT + +++ RL+EPT G I + + L+
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN-RLIEPT-SGEIFIDGEDIREQDPVELR 74
Query: 229 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
KIG+V Q LFPH+TV+E + LL+ P K++ +RA +++ +GL+ +
Sbjct: 75 RKIGYVIQQIGLFPHMTVEENIALVPKLLKWP----KEKIRERADELLALVGLDPAE--- 127
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GK 346
+ +SGG+++RV + + +P LL +DEP LD T ++ + + + + GK
Sbjct: 128 FADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187
Query: 347 TVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
T+V H + RL D++ ++ G ++ G E +
Sbjct: 188 TIVFVTHDIDEAFRL---ADRIAIMKNGEIVQVGTPDEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-24
Identities = 68/225 (30%), Positives = 119/225 (52%), Gaps = 19/225 (8%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---- 223
+ IL+ I+ + PGEV+ ++G SGSGK+TL L+ G + + H
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQR--FYVPENGRVLVDGHDLALAD 70
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGL 280
L+ ++G V Q++VLF + ++++ + AL ++ + + + A D I+EL
Sbjct: 71 PAWLRRQVGVVLQENVLF-NRSIRDNI---ALADPGMSMERVIEAAKLAGAHDFISELPE 126
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT++G G+SGG+R+R+ I +I NP +L DE TS LD + I++ + D
Sbjct: 127 G--YDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I AG+TV+ H+ S+ D++I++ KG ++ G E +A
Sbjct: 184 IC-AGRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKS 229
++G+ V GEV +GP+G+GKTT + +L+ L+ PT G+ + + ++
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTT-LLRPT-SGTARVAGYDVVREPRKVRR 66
Query: 230 KIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
IG V Q + LT +E L L LP K + E+RA +++ L D
Sbjct: 67 SIGIVPQYASVDEDLTGRENLEMMGRLYGLP----KDEAEERAEELLELFELGEAADRP- 121
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V SGG R+R+ I +I P +LFLDEPT+GLD T I ++ + E G T+
Sbjct: 122 ----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 349 VTTIH 353
+ T H
Sbjct: 178 LLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 3e-24
Identities = 77/262 (29%), Positives = 125/262 (47%), Gaps = 47/262 (17%)
Query: 127 PEDIEAGTRE--RPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGE 184
P + GTR RP+ Q E ++F +V++ +E L+ ++ ++ PGE
Sbjct: 445 PVERPEGTRFLHRPRLQGE------IEFRNVSFAY------PGQETPALDNVSLTIRPGE 492
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSKSLKSKIGFVTQDD 238
+A++G GSGK+TLL LL G L +PT GS+ + P L+ IG+V QD
Sbjct: 493 KVAIIGRIGSGKSTLLKLLLG-LYQPT-EGSVLLDGVDIRQIDPAD--LRRNIGYVPQDP 548
Query: 239 VLFPHLTVKETLTYAALL----RLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIG--G 290
LF + T+++ + A + + + GL D IG G
Sbjct: 549 RLF-YGTLRDNIALGAPYADDEEILRAAELAG----VTEFVRRHPDGL----DMQIGERG 599
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
R +SGG+R+ V + ++ +P +L LDEPTS +D+ + R L+ AGKT+V
Sbjct: 600 ---RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVL 655
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H+ S L D++I++ G
Sbjct: 656 VTHRTS--LLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 4e-24
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 19/133 (14%)
Query: 197 TTLLNLLSGRLMEPTVGGSITYNDH-----PYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251
+TLL L++G L++PT G+I + K L+ +IG V QD LFP LTV+E L
Sbjct: 1 STLLKLITG-LLQPT-SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311
+ L ++ + RA + + +GL D G+ SGG+++RV I ++
Sbjct: 59 FG--------LRDKEADARAEEALERVGLPDFLDREPVGTL----SGGQKQRVAIARALL 106
Query: 312 INPSLLFLDEPTS 324
P LL LDEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 5e-24
Identities = 73/224 (32%), Positives = 116/224 (51%), Gaps = 21/224 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
+ +L G+T +++PGEV+AL+GPSGSGK+T+ LL L +PT GG + + P
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQ-NLYQPT-GGQVLLDGVPLVQYDH 550
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L ++ V Q+ VLF +V+E + Y + K A D I E
Sbjct: 551 HYLHRQVALVGQEPVLFSG-SVRENIAYGLTDTPDEEIMAAAKAANAHDFIME--FPNGY 607
Query: 285 DTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G GS +SGG+++R+ I ++ P +L LDE TS LD+ Q+LQ+
Sbjct: 608 DTEVGEKGSQ---LSGGQKQRIAIARALVRKPRVLILDEATSALDA----ECEQLLQESR 660
Query: 343 E-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A +TV+ H+ S + D++++L KGS++ G + M
Sbjct: 661 SRASRTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 5e-24
Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 13/190 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----PY 223
++ ++N ++ VN GE++ L+GP+G+GKTT ++ G L+ P G I +D P
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVG-LVRPD-SGKILLDDEDITKLPM 73
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K + IG++ Q+ +F LTV++ + A L L K ++++ ++ E +
Sbjct: 74 HKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D+ S +SGGER+RV I + NP + LDEP +G+D + I ++++ + +
Sbjct: 133 RDSK-AYS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 344 AGKTVVTTIH 353
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 52/191 (27%), Positives = 97/191 (50%), Gaps = 21/191 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+N ++ V PGE++ L+GP+G+GKTTL NL++G +P+ G++ + + +
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPS-SGTVIFRGRDITGLPPHRIA 77
Query: 228 KSKIGFVTQDDVLFPHLTVKE--------TLTYAALLRLPNTLTKQQK-EKRAIDVINEL 278
+ I Q LFP LTV E L + LL P ++++ +RA +++ +
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL D G +S G+++R+ I + P LL LDEP +GL+ + +++
Sbjct: 138 GLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 339 QDIAEAGKTVV 349
+++ + G +
Sbjct: 193 RELRDRGGVTI 203
|
Length = 250 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 1e-23
Identities = 55/165 (33%), Positives = 83/165 (50%), Gaps = 14/165 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--SLK 228
+L + ++ GE++ LMGPSG GK+TLL+ + G L + G + N+ + +
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG + QD +LFPHL+V + L +A LP TL + A + GL+
Sbjct: 77 RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFH--- 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+SGG+R RV + ++ P L LDEP S LD ALR
Sbjct: 130 --QDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV--ALR 170
|
Length = 213 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99 bits (249), Expect = 1e-23
Identities = 64/223 (28%), Positives = 125/223 (56%), Gaps = 15/223 (6%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-----P 222
+ + ++ ++ +VN GE++ L+GP+G+GKTT ++ G + P G+I +D P
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG--IVPRDAGNIIIDDEDISLLP 71
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ IG++ Q+ +F L+V + L A+L++ + L+ +Q+E RA +++ E +E
Sbjct: 72 LHARARRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEH 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D+M G S +SGGER+RV I + NP + LDEP +G+D + + I ++++ +
Sbjct: 130 LRDSM-GQS----LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLR 184
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++G V+ T H L ++ ++ +G L+ G +E +
Sbjct: 185 DSGLGVLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEILQ 226
|
Length = 241 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 21/224 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
K IL ++ VNPGE A++GP+G+GKTTLL+LL+G P G +T + K
Sbjct: 42 NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE--HPPSSGDVTLLGRRFGKGE 99
Query: 226 ---SLKSKIGFVT--QDDVLFPHLTVKETLT---YAALLRLPNTLTKQQKEKRAIDVINE 277
L+ +IG V+ + TV++ + +A++ LT + A ++
Sbjct: 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLA-AAQWLLEL 158
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LG + + +S GE++RV I ++ +P LL LDEP GLD +++
Sbjct: 159 LGAKH-----LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNR 213
Query: 338 LQDIA--EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
L+++A ++ H F +LL +G ++ GK
Sbjct: 214 LEELAASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 2e-23
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 14/159 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL--KS 229
L+G++ + GE L+GPSG GKTTLL L++G PT G I + + K
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPT-SGEILLDGKDITNLPPHKR 72
Query: 230 KIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+ V Q+ LFPHLTV E + + L +LP K ++ A+D++ G
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK-ERVAEALDLVQLEGYAN------ 125
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+SGG+++RV I ++ P +L LDEP LD
Sbjct: 126 --RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 26/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSKS---- 226
L GI GE++AL+GP+G+GK+TL +G +++PT G + P Y K
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNG-ILKPT-SGEVLIKGEPIKYDKKSLLE 75
Query: 227 LKSKIGFVTQ--DDVLF-PHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLER 282
++ +G V Q DD LF P TV+E + + L L L K++ EKR + + +G+E
Sbjct: 76 VRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLS----KEEVEKRVKEALKAVGMEG 129
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
++ +SGG++KRV I + + P ++ LDEPTSGLD A +I+++L D+
Sbjct: 130 FENKP-----PHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN 184
Query: 343 EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+ G T++ + H L + DK+ ++ G ++ G E
Sbjct: 185 KEGITIIISTHDVD--LVPVYADKVYVMSDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 2e-23
Identities = 68/192 (35%), Positives = 100/192 (52%), Gaps = 19/192 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYSK 225
L IT GE L L+GPSG+GK++L LNLL SG L G ++ P K
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLN--IAGNHFDFSKTPSDK 75
Query: 226 S---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L+ +G V Q L+PHLTV+E L A L L+K Q RA ++ L L+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVL--GLSKDQALARAEKLLKRLRLKP 133
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D + +SGG+++RV I +++ P +L DEPT+ LD +IV +++++A
Sbjct: 134 YAD-----RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 343 EAGKTVVTTIHQ 354
E G T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-23
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 229
+ G++ V GE+ L+GP+G+GKTT + +L+ L++PT G T H + ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTT-LLKPT-SGRATVAGHDVVREPREVRR 73
Query: 230 KIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+IG V QD + LT E L +A L +P ++ R ++++ +GL D +
Sbjct: 74 RIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE----RIDELLDFVGLLEAADRL- 128
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKT 347
V+ SGG R+R+ I ++ P +LFLDEPT GLD T + + ++ + E G T
Sbjct: 129 ----VKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT 184
Query: 348 VVTTIH 353
++ T H
Sbjct: 185 ILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 2e-23
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 30/230 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------------ 219
+L+G+ SV GE +AL+GPSGSGK+T+L +L +EP G I
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRIL--MTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 220 -----DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
D + + +++KIG V Q LFPH TV + +T A +L L + + + EKRA+++
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMEL 130
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
++ +GL D +SGG+++RV I + + P ++ DE TS LD +
Sbjct: 131 LDMVGLADKAD-----HMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEV 185
Query: 335 VQMLQDIA-EAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASE 382
+ +++ +A E T++ H+ +F D++ KG ++ GK E
Sbjct: 186 LNVIRRLASEHDLTMLLVTHE--MGFAREFADRVCFFDKGRIVEQGKPDE 233
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 60/209 (28%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSKSL-----KSKIGFVTQ 236
+ AL GPSGSGKT+L+N+++G L P G I N K + K +IG+V Q
Sbjct: 26 ITALFGPSGSGKTSLINMIAG-LTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
D LFPH TV+ L Y + + + + + + LG+E D +
Sbjct: 84 DARLFPHYTVRGNLRYGM------WKSMRAQFDQLVAL---LGIEHLLDRY-----PGTL 129
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGGE++RV IG ++ P LL +DEP + LD I+ L+ + + + +
Sbjct: 130 SGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL 189
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ D++++L G + G E
Sbjct: 190 DEVLRLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 3e-23
Identities = 77/272 (28%), Positives = 140/272 (51%), Gaps = 30/272 (11%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F+ D P + + GTR + + + ++F +VT++ ++ L+ I+ +
Sbjct: 308 FTLLDSPPEKDTGTRAIERARGD------VEFRNVTFRY------PGRDRPALDSISLVI 355
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236
PGE +AL+G SGSGK+TL+NL+ R EP G I + H + SL+ ++ V+Q
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP-RFYEPD-SGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 237 DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINEL--GLERCQDTMIGGSFV 293
D VLF T+ + Y + + + A D +++L GL DT IG + V
Sbjct: 414 DVVLFND-TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGL----DTPIGENGV 468
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+SGG+R+R+ I ++ + +L LDE TS LD+ + + L+ + + G+T + H
Sbjct: 469 L-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAH 526
Query: 354 QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ S+ K D+++++ G ++ G +E +A
Sbjct: 527 RLST--IEKADRIVVMDDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 4e-23
Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 18/189 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KS 226
+ +IL+ ++ + GE++AL G +G+GKTTL +L+G L++ + GSI N P K
Sbjct: 11 KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIKES-SGSILLNGKPIKAKE 68
Query: 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ IG+V QD LF +V+E L LL L ++ A V+ +L L +
Sbjct: 69 RRKSIGYVMQDVDYQLFTD-SVREEL----LLGLKELDAGNEQ---AETVLKDLDLYALK 120
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ +SGG+++R+ I ++ LL DEPTSGLD R+ ++++++A
Sbjct: 121 E-----RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 345 GKTVVTTIH 353
GK V+ H
Sbjct: 176 GKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 5e-23
Identities = 66/247 (26%), Positives = 122/247 (49%), Gaps = 31/247 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +++Y + + +L+G++ + PGEVLA++GP+G+GK+TLL LSG +
Sbjct: 2 IRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-LS 52
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTK 264
P G +T N P + + L + Q+ L FP TV+E + + R+P+ +
Sbjct: 53 PD-SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP-FTVQEVV---QMGRIPHRSGR 107
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV------CIGNEIIINPSLLF 318
+ +E I L + + G R +SGGE++RV + + LF
Sbjct: 108 EPEEDER---IAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLF 164
Query: 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYF 377
LDEPTS LD +++ + +A G V+ +H + L ++ D+++LL +G ++
Sbjct: 165 LDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIAS 222
Query: 378 GKASEAM 384
G + +
Sbjct: 223 GSPQDVL 229
|
Length = 259 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 6e-23
Identities = 61/194 (31%), Positives = 103/194 (53%), Gaps = 19/194 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 225
++L G+ + GEVLAL+G +G+GK+TLL L+G L+ P G++ + P YS+
Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNG-LLRPQ-SGAVLIDGEPLDYSR 60
Query: 226 S----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ ++G V Q DD LF V + + + L L L++ + E+R + + +G
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLF-AADVDQDVAFG-PLNL--GLSEAEVERRVREALTAVG 116
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ +SGGE+KRV I + + P +L LDEPT+GLD +++ +L+
Sbjct: 117 ASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 340 DIAEAGKTVVTTIH 353
+ G TVV + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 6e-23
Identities = 63/213 (29%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSK 230
L+ + V G ++AL+GPSGSGK+TLL +++G L +P G I N D + K
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPD-SGRIRLNGQDATRVHARDRK 73
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
IGFV Q LF HLTV++ + + +R + + + EL LE Q +G
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR-------VEEL-LELVQLEGLGD 125
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVV 349
+ +SGG+R+RV + + + P +L LDEP LD+ + L+ + + T V
Sbjct: 126 RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H + D+++++ G + G E
Sbjct: 186 FVTHDQEEAM-EVADRIVVMSNGKIEQIGSPDE 217
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 6e-23
Identities = 69/198 (34%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTL---LNLL----SGRLMEPTVGGSITYNDHPYS 224
L IT GE L L+GPSG+GK++L LNLL SG L +I N +S
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL-------NIAGNHFDFS 69
Query: 225 K--------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K L+ +G V Q L+PHLTV++ L A L L+K Q RA ++
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL--GLSKDQALARAEKLLE 127
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L L+ D F +SGG+++RV I +++ P +L DEPT+ LD +IV
Sbjct: 128 RLRLKPYAD-----RFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 337 MLQDIAEAGKTVVTTIHQ 354
+++++AE G T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 7e-23
Identities = 71/207 (34%), Positives = 104/207 (50%), Gaps = 35/207 (16%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 229
D+L+ ++ S+ GE++A++G SGSGK+TLL+LL G L PT G + +N P SK L S
Sbjct: 23 DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTPT-SGDVIFNGQPMSK-LSSA 79
Query: 230 --------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
K+GF+ Q L P T E A+ L + RA++++ +GLE
Sbjct: 80 AKAELRNQKLGFIYQFHHLLPDFTALEN---VAMPLLIGKKKPAEINSRALEMLAAVGLE 136
Query: 282 RCQDTMIGGSFVRG------VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
R +SGGER+RV I ++ NP L+ DEPT LD+ A I
Sbjct: 137 H-----------RANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 336 QMLQDIAEAGKT---VVTTIHQPSSRL 359
Q+L ++ T VVT Q + R+
Sbjct: 186 QLLGELNRLQGTAFLVVTHDLQLAKRM 212
|
Length = 233 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 8e-23
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
+N ++ V GE+ +MG SGSGK+TLL ++ RL+EPT G + + + +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCIN-RLIEPT-SGKVLIDGQDIAAMSRKELR 97
Query: 230 -----KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
KI V Q L PH TV E + + ++ + + ++E+RA + + +GLE +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWE 154
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 341
+ +SGG ++RV + + ++P +L +DE S LD I + +QD
Sbjct: 155 H-----KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPL----IRREMQDELLR 205
Query: 342 --AEAGKTVVTTIH 353
AE KT+V H
Sbjct: 206 LQAELQKTIVFITH 219
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 9e-23
Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-L 227
+L G++ + GE +AL+G +G GK+TLL LL+ R +P G I N P YS++ L
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQ-QGEILLNGQPIADYSEAAL 412
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ I V+Q LF T+++ L AA ++ I+V+ ++GLE+ +
Sbjct: 413 RQAISVVSQRVHLFSA-TLRDNLLLAA---------PNASDEALIEVLQQVGLEKLLEDD 462
Query: 288 IG-----GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
G G R +SGGE++R+ I ++ + LL LDEPT GLD+ T +I+++L + A
Sbjct: 463 KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA 522
Query: 343 EAGKTVVTTIHQPSSRLF--HKFDKLILLGKGSLLYFGKASEAMA----YFS 388
KTV+ H RL +FD++ ++ G ++ G E +A Y+
Sbjct: 523 -QNKTVLMITH----RLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQ 569
|
Length = 574 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 1e-22
Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 29/217 (13%)
Query: 182 PG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--------KIG 232
PG V A+ G SGSGKTTL+ L++G L P G I N S K +IG
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAG-LTRPD-EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIG 289
+V Q+ LFPHL+V+ L Y + + + +R I VI LG+ +
Sbjct: 79 YVFQEARLFPHLSVRGNLRYG--------MKRARPSERRISFERVIELLGIGH-----LL 125
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
G +SGGE++RV IG ++ +P LL +DEP + LD I+ L+ + AE G +
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ H L D++++L G + G +E A
Sbjct: 186 LYVSHSLQEVL-RLADRVVVLEDGRVAAAGPIAEVWA 221
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 34/235 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--------TYN 219
+K L GI+ S+ GE LA++GPSGSGK+TL L+ G + P GS+ ++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG--IWPPTSGSVRLDGADLKQWD 386
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDV 274
+ K IG++ QD LFP TV E + R ++ K ++
Sbjct: 387 RETFGKH----IGYLPQDVELFPG-TVAENIA-----RFGENADPEKIIEAAKLAGVHEL 436
Query: 275 INELGLERCQDTMIG--GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
I L L DT+IG G+ +SGG+R+R+ + + +P L+ LDEP S LD
Sbjct: 437 I--LRLPDGYDTVIGPGGA---TLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 333 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387
+ ++ + G TVV H+PS L DK+++L G + FG+ E +A
Sbjct: 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 98.3 bits (245), Expect = 1e-22
Identities = 52/189 (27%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
++ L+ ++ G ++ +GP+G+GK+T + +++G L P GS+ K
Sbjct: 14 TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL--PPDSGSVQVCGEDVLQNPK 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
++ IG++ + + L+ + V+E L + A + + L KQ+ E+ +I +GL Q
Sbjct: 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE----MIELVGLRPEQ 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
IG +S G R+RV + +I +P +L LDEPT+GLD + I ++++I +
Sbjct: 128 HKKIGQ-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182
Query: 345 GKTVVTTIH 353
KT++ + H
Sbjct: 183 -KTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 1e-22
Identities = 80/253 (31%), Positives = 122/253 (48%), Gaps = 50/253 (19%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+K LN ++ P E+ AL+GPSGSGK+TLL N ++ E T+ GSI YN H YS
Sbjct: 17 KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +IG V Q FP +++ E + Y LRL K K+K+ +D E
Sbjct: 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRL-----KGIKDKQVLDEAVEKS 128
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R D+ +G +SGG+++RVCI + +P ++ LDEPTS LD
Sbjct: 129 LKGASIWDEVKDRLHDSALG------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 330 TALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388
+A +I + L + + +VT Q +SR+ D+ G L+ +
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQASRI---SDRTGFFLDGDLIEYND--------- 230
Query: 389 SIGCSPQIAMNPA 401
+ Q+ MNP
Sbjct: 231 ----TKQMFMNPK 239
|
Length = 252 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 1e-22
Identities = 57/213 (26%), Positives = 88/213 (41%), Gaps = 54/213 (25%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP- 222
E +L ++ S+ PGE LA++GPSGSGK+TL L+ G L+ PT G + +
Sbjct: 9 RYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILG-LLRPT-SGRVRLDGADI 66
Query: 223 ---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L +G++ QDD LF ++ E N L
Sbjct: 67 SQWDPNELGDHVGYLPQDDELFSG-SIAE-----------NIL----------------- 97
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
SGG+R+R+ + + NP +L LDEP S LD + Q +
Sbjct: 98 -----------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
+ AG T + H+P D++++L G
Sbjct: 141 ALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 1e-22
Identities = 65/193 (33%), Positives = 108/193 (55%), Gaps = 21/193 (10%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRLMEPTVGGSITYNDHPY 223
+L+ I +++ GEV+ ++GPSGSGK+TLL N L SG L+ V G +
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI---VDGLKVNDPKVD 71
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGL-E 281
+ ++ + G V Q LFPHLT E + + L +R +K++ EK+A +++ ++GL E
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR---GASKEEAEKQARELLAKVGLAE 128
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
R + +SGG+++RV I + + P L+ DEPTS LD +++++QD+
Sbjct: 129 R------AHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL 182
Query: 342 AEAGKTVVTTIHQ 354
AE G T+V H+
Sbjct: 183 AEEGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.3 bits (242), Expect = 1e-22
Identities = 62/204 (30%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E ++L G++ N G+V++++G SGSGK+T L ++ +E GSI N +
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN--FLEKPSEGSIVVNGQTINLVRD 74
Query: 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
+ L++++ V Q L+ H+TV E + A + L L+KQ+ +RA
Sbjct: 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERA 132
Query: 272 IDVINELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ + ++G+ ER Q G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 133 VKYLAKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPEL 187
Query: 331 ALRIVQMLQDIAEAGKTVVTTIHQ 354
+++++Q +AE GKT+V H+
Sbjct: 188 VGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 2e-22
Identities = 67/224 (29%), Positives = 113/224 (50%), Gaps = 30/224 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK---S 229
L+ ++ +V PG +AL+GP+G+GK+TL +LL+ + G I+ H ++ + +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQE--GQISVAGHDLRRAPRAALA 74
Query: 230 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 287
++G V Q L L+V++ L Y AAL L + + R +++ LGL ER
Sbjct: 75 RLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----RAEARARIAELLARLGLAER----- 125
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 346
VR ++GG R+RV I ++ P+LL LDEPT GLD + I ++ + G
Sbjct: 126 -ADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 347 TVVTTIH-----QPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+V+ H + D+L++L +G +L G A+E
Sbjct: 185 SVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAELRG 221
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-22
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 38/243 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V+Y SS K+IL I+ G + ++GPSG+GK+TL+ L++ RL++
Sbjct: 4 IEFKEVSY--------SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN-RLID 54
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT GSI + L+ KIG V Q LF TVK+ + Y +L
Sbjct: 55 PT-EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEG-TVKDNIEYGPML--------- 103
Query: 266 QKEKRAIDV---INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
K ++ +DV ++ +GL + T V+ +SGGE +RV I + NP +L LDEP
Sbjct: 104 -KGEKNVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEP 158
Query: 323 TSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 379
TS LD T+ I +++ + TV+ H + + R+ D L KG L+ + K
Sbjct: 159 TSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI---GDYTAFLNKGILVEYAK 215
Query: 380 ASE 382
+
Sbjct: 216 TYD 218
|
Length = 241 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 4e-22
Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 18/229 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF +VT+ + + +L ++ +++PGEV AL+GPSGSGK+T++ LL +
Sbjct: 12 VKFQNVTF-----AYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLE-NFYQ 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
P GG + + P S K L SK+ V Q+ VLF ++++ + Y + +
Sbjct: 66 PQ-GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEA 123
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
++ A I+EL + GS +SGG+++RV I +I NP +L LDE TS
Sbjct: 124 AQKAHAHSFISELASGYDTEVGEKGSQ---LSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
LD+ + ++ Q L D E +TV+ H+ S + D++++L G +
Sbjct: 181 LDAESEQQVQQALYDWPER-RTVLVIAHRLS--TVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 4e-22
Identities = 67/204 (32%), Positives = 106/204 (51%), Gaps = 13/204 (6%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K L I ++ GE+L ++GPSG GKTTLLNL++G + GSIT + P
Sbjct: 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAG-FVPYQ-HGSITLDGKPVEGPGAE 71
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
+ G V Q++ L P V++ + + L+L + K Q+ + A ++ ++GLE
Sbjct: 72 R-GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEG-----AE 122
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTV 348
++ +SGG+R+RV I + NP LL LDEP LD+ T ++ +L + E GK V
Sbjct: 123 KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H +F + L+LL G
Sbjct: 183 LLITHDIEEAVFMATE-LVLLSPG 205
|
Length = 255 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 5e-22
Identities = 64/204 (31%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG---- 213
V L+ +T L+ + + GE + L+GPSG GKTT L +++G L EPT G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYI 59
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G D P I V Q+ L+PH+TV + + + LR + K + ++R +
Sbjct: 60 GGRDVTDLPPKDR---DIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVRE 113
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
V L +E D + +SGG+R+RV +G I+ P + +DEP S LD+ LR
Sbjct: 114 VAELLQIEHLLD-----RKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDA--KLR 166
Query: 334 IVQMLQDI----AEAGKTVVTTIH 353
VQM ++ G T + H
Sbjct: 167 -VQMRAELKRLQQRLGTTTIYVTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 6e-22
Identities = 63/238 (26%), Positives = 113/238 (47%), Gaps = 33/238 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHP--YSK 225
+N ++ GE+ +MG SGSGK+T + +L+ RL+EPT G G P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLN-RLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ KIG V Q LFPH+T+ + + LL P +Q+++++A++++ +GLE +
Sbjct: 68 VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWP----EQERKEKALELLKLVGLEEYE 123
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AE 343
+ +SGG ++RV + + P +L +DE S LD + L+ + A
Sbjct: 124 H-----RYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPA 401
KT+V H + D+++++ G ++ +G +I NPA
Sbjct: 179 LQKTIVFITHDLDEAI-RIGDRIVIMKAGEIV-------------QVGTPDEILRNPA 222
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 7e-22
Identities = 62/185 (33%), Positives = 100/185 (54%), Gaps = 21/185 (11%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK--IGFVTQ 236
+V GE++A+MGPSG+GK+TLLNL++G +EP GSI ND ++ + + + Q
Sbjct: 20 NVADGEIVAIMGPSGAGKSTLLNLIAG-FIEP-ASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV++ + L P L +Q+EK +D ++G+ D +
Sbjct: 78 ENNLFAHLTVRQNI---GLGLHPGLKLNAEQQEK-VVDAAQQVGIADYLDRLPE-----Q 128
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA----EAGKTVVTT 351
+SGG+R+RV + ++ +L LDEP S LD LR +ML + E +T++
Sbjct: 129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDP--LLR-EEMLALVKQLCSERQRTLLMV 185
Query: 352 IHQPS 356
H S
Sbjct: 186 THHLS 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 7e-22
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 38/229 (16%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN-LLSGRLMEPTVGGSITYNDHPYS 224
+L I+ S+ PGE + ++G +GSGK++LL L RL+E + GSI + S
Sbjct: 13 RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF--RLVELS-SGSILIDGVDIS 69
Query: 225 K----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
K L+S+I + QD VLF T++ L P + ++ + +GL
Sbjct: 70 KIGLHDLRSRISIIPQDPVLFSG-TIRSNLD-------PFG---EYSDEELWQALERVGL 118
Query: 281 -ERCQ------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
E + DT++ GG +S G+R+ +C+ ++ +L LDE T+ +D T
Sbjct: 119 KEFVESLPGGLDTVVEEGGEN---LSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFG 378
I + +++ A TV+T H RL D++++L KG ++ F
Sbjct: 176 ALIQKTIRE-AFKDCTVLTIAH----RLDTIIDSDRILVLDKGRVVEFD 219
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 7e-22
Identities = 67/222 (30%), Positives = 96/222 (43%), Gaps = 37/222 (16%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+ D+ +V +K+IL G+ +V GEV A+MGP+GSGK+TL + G
Sbjct: 4 LEIKDLHVEV-------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY 56
Query: 210 PTVGGSITYNDH------PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263
G I ++ P ++ I Q V P +T + L A R
Sbjct: 57 EVTEGEILFDGEDILELSPDERARAG-IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGI 115
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFV-RGV----SGGERKRVCIGNEI----IINP 314
+ K + LGL+ F+ R V SGGE+KR NEI ++ P
Sbjct: 116 LPEFIKELKEKAELLGLDE--------EFLERYVNEGFSGGEKKR----NEILQLLLLEP 163
Query: 315 SLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQP 355
L LDEP SGLD AL+IV + + E G+ V+ H
Sbjct: 164 KLAILDEPDSGLD-IDALKIVAEGINALREEGRGVLIITHYQ 204
|
Length = 251 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 9e-22
Identities = 58/210 (27%), Positives = 95/210 (45%), Gaps = 51/210 (24%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS 224
+E+ +L ++ + GE +AL+G SGSGK+TLL LL+G L G IT + P
Sbjct: 13 QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQ--GEITLDGVPVSDLE 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K+L S I + Q P+L + LR N LG
Sbjct: 71 KALSSLISVLNQR----PYL-------FDTTLR------------------NNLG----- 96
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
R SGGER+R+ + ++ + ++ LDEPT GLD T +++ ++ ++ +
Sbjct: 97 ---------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK- 146
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
KT++ H + DK++ L G +
Sbjct: 147 DKTLIWITHHLTG--IEHMDKILFLENGKI 174
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-21
Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 22/203 (10%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQDDVL 240
GE+ A++GPSGSGK+TLLNL++G E G + N D + + + Q++ L
Sbjct: 24 GEITAIVGPSGSGKSTLLNLIAG--FETPQSGRVLINGVDVTAAPPADRPVSMLFQENNL 81
Query: 241 FPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR---GV 296
F HLTV++ + L P LT + ++ AI+V L R + G R +
Sbjct: 82 FAHLTVEQNV---GLGLSPGLKLTAEDRQ--AIEVA----LAR---VGLAGLEKRLPGEL 129
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQP 355
SGGER+RV + ++ + +L LDEP + LD ++ ++ D+ AE TV+ HQP
Sbjct: 130 SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP 189
Query: 356 SSRLFHKFDKLILLGKGSLLYFG 378
+++ L G + G
Sbjct: 190 EDAK-RLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 60/223 (26%), Positives = 113/223 (50%), Gaps = 21/223 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
EK+ L I + +V AL+GPSG GK+TLL N ++ + + G + ++ Y
Sbjct: 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD 72
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP +++ + + Y RL K++ ++ + + +
Sbjct: 73 KKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAA 129
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + + G+SGG+++R+CI + + P +L LDEPTS LD +I +++
Sbjct: 130 LWDEVKDRLHDSAL--GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 339 QDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGK 379
Q++ + T+V H Q ++R+ D+ G L+ +G
Sbjct: 188 QELKKK-YTIVIVTHNMQQAARI---SDRTAFFYDGELVEYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 3e-21
Identities = 60/212 (28%), Positives = 87/212 (41%), Gaps = 58/212 (27%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+ D+ V K+IL G+ ++ GEV ALMGP+GSGK+TL + G +
Sbjct: 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH-PK 51
Query: 210 PTV-GGSITYNDH------PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262
V G I + P ++ I Q P + + L Y
Sbjct: 52 YEVTEGEILFKGEDITDLPPEERARLG-IFLAFQYPPEIPGVKNADFLRY---------- 100
Query: 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+NE G SGGE+KR I +++ P L LDEP
Sbjct: 101 ------------VNE-----------------GFSGGEKKRNEILQLLLLEPDLAILDEP 131
Query: 323 TSGLDSTTALRIV-QMLQDIAEAGKTVVTTIH 353
SGLD ALR+V +++ + E GK+V+ H
Sbjct: 132 DSGLD-IDALRLVAEVINKLREEGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 3e-21
Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 24/220 (10%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP 222
E + L GI+ ++ GE++ +GP+G+GKTT L +LSG L++PT V G + +
Sbjct: 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSG-LLQPTSGEVRVAGLVPWKR-- 88
Query: 223 YSKSLKSKIGFVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
K +IG V Q L+ L V ++ LL L + +KR ++ L LE
Sbjct: 89 -RKKFLRRIGVVFGQKTQLWWDLPVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLE 144
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
DT VR +S G+R R I ++ P +LFLDEPT GLD I L++
Sbjct: 145 ELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEY 199
Query: 342 -AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
E G TV+ T H + L +++++ KG LLY G
Sbjct: 200 NRERGTTVLLTSHYMKDIEAL---ARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 3e-21
Identities = 53/183 (28%), Positives = 94/183 (51%), Gaps = 13/183 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G++ +V PGEV AL+G +G+GK+TL+ +LSG + P G I + P + +L
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG-VYPPD-SGEILIDGKPVAFSSPRDAL 81
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-EKRAIDVINELGLERCQDT 286
+ I V Q+ L P+L+V E + L ++ +RA +++ LGL+ DT
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDT 141
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ V +S +R+ V I + + +L LDEPT+ L R+ +++ + G
Sbjct: 142 L-----VGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGV 196
Query: 347 TVV 349
++
Sbjct: 197 AII 199
|
Length = 500 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 4e-21
Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 28/233 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSK 225
+K +++G++ V GE L+GP+G+GKTT L +L G L P GSI+ P ++
Sbjct: 19 DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG-LTHPD-AGSISLCGEPVPSRAR 76
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ ++G V Q D L P TV+E L Y L + ++ LE
Sbjct: 77 HARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGL-------SAAAARALVPPLLEFAKLE 129
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D V +SGG ++R+ + ++ +P +L LDEPT+GLD + + L+ +
Sbjct: 130 NKADAK-----VGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL 184
Query: 342 AEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
GKT++ T H + + RL +L ++ +G + G + S IGC
Sbjct: 185 LARGKTILLTTHFMEEAERLCD---RLCVIEEGRKIAEGAPHALIE--SEIGC 232
|
Length = 306 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 5e-21
Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 25/184 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYS 224
++ I+ ++ PGE L L+G SGSGK+T LL L++ + G I ++ P
Sbjct: 298 HNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLH 350
Query: 225 K-------SLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
++ +I V QD L P L V + + + P TL+ Q+E++ I V+
Sbjct: 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVM 409
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
E+GL+ F SGG+R+R+ I +I+ PSL+ LDEPTS LD T +I+
Sbjct: 410 EEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465
Query: 336 QMLQ 339
+L+
Sbjct: 466 ALLK 469
|
Length = 529 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 7e-21
Identities = 65/193 (33%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 224
IL G+ V GE +AL+G SGSGK+TLL +L SG + VG + D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVS--LVGQPLHQMDEEAR 82
Query: 225 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L++K +GFV Q +L P L E + ALLR + +Q A ++ +LGL +
Sbjct: 83 AKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES---SRQSRNGAKALLEQLGLGKR 139
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 342
D + +SGGE++RV + P +LF DEPT LD T +I +L +
Sbjct: 140 LDHLPA-----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR 194
Query: 343 EAGKTVVTTIHQP 355
E G T++ H
Sbjct: 195 EHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 8e-21
Identities = 59/208 (28%), Positives = 100/208 (48%), Gaps = 18/208 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
ILN I+ SV GE +A+ GPSG GK+TLL +++ L+ PT G++ + S ++
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDVSTLKPEAY 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ ++ + Q LF TV++ L + +R ++ A+D++ L
Sbjct: 76 RQQVSYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAALDLLARFAL----PDS 125
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGK 346
I + +SGGE++R+ + + P +L LDE TS LD + I +M+ + E
Sbjct: 126 ILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNV 185
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
V+ H + H DK+I L G
Sbjct: 186 AVLWITHDKDQAIRH-ADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 8e-21
Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 44/237 (18%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225
+ +L+ ++ ++ PGEV+A++GP+G+GK+TLL LSG L G + N P +
Sbjct: 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL--SPDSGEVRLNGRPLADWSPA 72
Query: 226 SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L + + Q L FP TV+E + A+ R P+ L++ + + + ++ L
Sbjct: 73 ELARRRAVLPQHSSLSFP-FTVEEVV---AMGRAPHGLSRAEDDALVAAALAQVDL---- 124
Query: 285 DTMIGGSFVRGVSGGERKRV----------CIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ G +SGGE++RV P L LDEPTS LD +
Sbjct: 125 -AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP----PRWLLLDEPTSALDLAHQHHV 179
Query: 335 VQMLQDIA-EAGKTVVTTIH------QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+++ + +A E G V+ +H + + D+++LL +G L+ G +E +
Sbjct: 180 LRLARQLAHERGLAVIVVLHDLNLAARYA-------DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 9e-21
Identities = 61/224 (27%), Positives = 116/224 (51%), Gaps = 19/224 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
K ILN ++ S+ G++ AL+GP+G GK+TLL + RL+ P G++ D P S
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ-SGTVFLGDKPISMLSS 71
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L ++ + Q + +TV+E + Y + L L L+ ++ ++ +E+
Sbjct: 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLS--AEDNARVNQ----AMEQ 125
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+ + + +SGG+R+R + + + ++ LDEPT+ LD + ++++++++
Sbjct: 126 TRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN 185
Query: 343 EAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
GKTVVT +H +SR D L++L G ++ G E M
Sbjct: 186 TQGKTVVTVLHDLNQASRY---CDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 9e-21
Identities = 56/199 (28%), Positives = 107/199 (53%), Gaps = 22/199 (11%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGS 215
++L G++ N G+V++++G SGSGK+T L N L +G + ++ G
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ D + L++++G V Q L+ H+TV E + A + L ++K + +RA +
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYL 137
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
++G+ D ++ +SGG+++RV I + + P ++ DEPTS LD ++
Sbjct: 138 AKVGIAEKAD-----AYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192
Query: 336 QMLQDIAEAGKTVVTTIHQ 354
+++QD+AE G+T+V H+
Sbjct: 193 KVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 95.8 bits (239), Expect = 1e-20
Identities = 63/195 (32%), Positives = 104/195 (53%), Gaps = 13/195 (6%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 234
+V PGE +AL+GPSG+GK+TLLNLL G ++PT GSI N P + S + +I +V
Sbjct: 344 TVPPGERVALVGPSGAGKSTLLNLLLG-FVDPT-EGSIAVNGVPLADADADSWRDQIAWV 401
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294
Q LF T+ E + A + + + + + L DT IG
Sbjct: 402 PQHPFLFAG-TIAENIRLARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEG-GA 457
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
G+SGG+ +R+ + + + LL LDEPT+ LD+ T +++ L+ +A+ G+TV+ H+
Sbjct: 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQ-GRTVLLVTHR 516
Query: 355 PSSRLFHKFDKLILL 369
+ D++++L
Sbjct: 517 LALA--ALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 52/194 (26%), Positives = 92/194 (47%), Gaps = 34/194 (17%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+K L I + +V AL+GPSG GK+TLL N ++ + V G + + Y
Sbjct: 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ ++G V Q FP +++ + + Y LRL + + +D I E
Sbjct: 79 PKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYG--LRL------HGIKDKELDEIVESS 129
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R + G+SGG+++R+CI + + P +L +DEPTS LD
Sbjct: 130 LKKAALWDEVKDRLHKS------ALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPI 183
Query: 330 TALRIVQMLQDIAE 343
+ L+I +++ ++ +
Sbjct: 184 STLKIEELITELKK 197
|
Length = 253 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 27/194 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSKS--- 226
+N + V GE+ +MG SGSGK+TL+ LL+ RL+EPT G I + S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLN-RLIEPT-RGEILVDGKDIAKLSAAELR 101
Query: 227 --LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ KI V Q L PH TV E + + ++ + K ++E+RA++ + +GLE
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYA 158
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--- 341
D + +SGG ++RV + + +P +L +DE S LD I +QD
Sbjct: 159 D-----KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL----IRTEMQDELLE 209
Query: 342 --AEAGKTVVTTIH 353
A+ KT+V H
Sbjct: 210 LQAKLKKTIVFITH 223
|
Length = 386 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 58/190 (30%), Positives = 96/190 (50%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L ++ SV GE+ ++G SG+GK+TL+ ++G L PT GS+ + +
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERPT-SGSVLVDGTDLTLLSGKELR 78
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +IG + Q L TV E + L + K + E+R ++++ +GLE D
Sbjct: 79 KARRRIGMIFQHFNLLSSRTVFENVALP--LEIAGV-PKAEIEERVLELLELVGLEDKAD 135
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
++ +SGG+++RV I + NP +L DE TS LD T I+ +L+DI E
Sbjct: 136 -----AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL 190
Query: 345 GKTVVTTIHQ 354
G T+V H+
Sbjct: 191 GLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 2e-20
Identities = 69/214 (32%), Positives = 103/214 (48%), Gaps = 17/214 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHPYSKSLKS 229
L G+ ++ GE ++L+G SG GK+TLLNL+SG L +PT GG I P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRM-- 57
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
V Q+ L P LTV+E + A+ R+ L+K ++ + I +GL D G
Sbjct: 58 ---VVFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPG 113
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+SGG ++RV I + I P +L LDEP LD+ T + + L I E TV
Sbjct: 114 -----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTV 168
Query: 349 VTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ H L D++++L G G+ E
Sbjct: 169 LMVTHDVDEALLLS-DRVVMLTNGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-20
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 15/190 (7%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L+G++ + PGE +A++GPSGSGK+TLL L+G L + G +T + P S +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLL--DPLQGEVTLDGVPVSSLDQDEV 407
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQD 285
+ ++ QD LF TV+E L A L + D + L GL D
Sbjct: 408 RRRVSVCAQDAHLF-DTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGL----D 462
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
T++G R +SGGER+R+ + ++ + +L LDEPT LD+ TA +++ L A +G
Sbjct: 463 TVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-ALSG 520
Query: 346 KTVVTTIHQP 355
+TVV H
Sbjct: 521 RTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 92.8 bits (230), Expect = 3e-20
Identities = 60/215 (27%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSK 225
+L+ ++ + GE+LAL+G SG GKTTLL ++G + + G I D P+ +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L + Q+ LFPHL V++ + + + K K A V + L L D
Sbjct: 80 GL----ALLFQNYALFPHLKVEDNVAFGLRAQ------KMPKADIAERVADALKLVGLGD 129
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-- 343
+SGG ++R+ I I I P +L LDEP S LD+ + + + + E
Sbjct: 130 A--AAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T++ H L DK ++ G L G
Sbjct: 188 PELTILCVTHDQDDALTLA-DKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 3e-20
Identities = 56/168 (33%), Positives = 91/168 (54%), Gaps = 18/168 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHPYSKSLKSKIGFVTQ 236
+V GE +A++GPSG+GK+TLLNL++G L GS+T N DH + + + + Q
Sbjct: 21 TVERGERVAILGPSGAGKSTLLNLIAGFL--TPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 237 DDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ LF HLTV + + L P L Q+EK + ++G+E + G
Sbjct: 79 ENNLFSHLTVAQNI---GLGLNPGLKLNAAQREKLH-AIARQMGIEDLLARLPG-----Q 129
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR--IVQMLQDI 341
+SGG+R+RV + ++ +L LDEP S LD ALR ++ ++ +
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDP--ALRQEMLTLVSQV 175
|
Length = 232 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 4e-20
Identities = 63/226 (27%), Positives = 117/226 (51%), Gaps = 24/226 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224
K +L+ ++ + G + +++GP+G+GK+TLL+++S RL++ G IT + S
Sbjct: 13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLKKD-SGEITIDGLELTSTPS 70
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLER 282
K L K+ + Q++ + LTV++ + + R P + + KE R I + I L LE
Sbjct: 71 KELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLED 127
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D ++ +SGG+R+R I + + + LDEP + LD +++I+++L+ +A
Sbjct: 128 LSD-----RYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 343 -EAGKTVVTTIH---QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
E GKT+V +H S D ++ L G ++ G E +
Sbjct: 183 DELGKTIVVVLHDINFASCYS----DHIVALKNGKVVKQGSPDEII 224
|
Length = 252 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 4e-20
Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 42/172 (24%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
++G++ S+ GE L L+G SG GK+TL L+ L EPT G I + +K
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPT-SGEILFEGKDITK------ 79
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
L+K+++ +R ++++ ++GL
Sbjct: 80 ------------------------------LSKEERRERVLELLEKVGL----PEEFLYR 105
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ +SGG+R+R+ I + +NP L+ DEP S LD + +I+ +L+D+ E
Sbjct: 106 YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE 157
|
Length = 268 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 5e-20
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 22/219 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSK 230
L+ ++ + GE++AL+GPSGSGKTTLL L++G +E G+I + + +
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG--LERPDSGTILFGGEDATDVPVQERN 75
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLR----LPNTLTKQQKEKRAIDVINELGLERCQDT 286
+GFV Q LF H+TV + + + ++ P + K ++EL L+ Q
Sbjct: 76 VGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK-------VHEL-LKLVQLD 127
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT--ALR-IVQMLQDIAE 343
+ + +SGG+R+RV + + + P +L LDEP LD+ LR ++ L D E
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD--E 185
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T V H L D+++++ KG + G E
Sbjct: 186 LHVTTVFVTHDQEEAL-EVADRVVVMNKGRIEQVGTPDE 223
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 5e-20
Identities = 58/186 (31%), Positives = 102/186 (54%), Gaps = 16/186 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ +N I+ +V V L+GP+G+GK+TLL +++G ++ PT G I ++ HP+++
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITG-ILRPT-SGEIIFDGHPWTRKDL 69
Query: 229 SKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
KIG + + L+ +LT +E L + LL LP + R +V+N + L T
Sbjct: 70 HKIGSLIESPPLYENLTARENLKVHTTLLGLP--------DSRIDEVLNIVDL-----TN 116
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
G + S G ++R+ I ++ +P LL LDEPT+GLD + ++++ E G T
Sbjct: 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGIT 176
Query: 348 VVTTIH 353
V+ + H
Sbjct: 177 VILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 6e-20
Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 12/222 (5%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
++K IL GI+ ++ GE L ++GPSGSGK+TL LL G P GS+ + +
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWD 404
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L IG++ QD LF T+ E + P + + + ++I L L +
Sbjct: 405 REQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELI--LRLPQG 461
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
DT IG +SGG+R+R+ + + +P L+ LDEP S LDS + +
Sbjct: 462 YDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA 520
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
G TVV H+PS DK+++L G + FG E +A
Sbjct: 521 RGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 6e-20
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 13/170 (7%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L+G++ S + K++++ + ++N GE L L+GPSG GKTT+L L++G P G I +
Sbjct: 17 LRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-FETPD-SGRIMLD 74
Query: 220 DHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ + + V Q LFPH+TV E + + LR+ T + R ++ +
Sbjct: 75 GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFG--LRMQKT-PAAEITPRVMEALRM 131
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ LE +SGG+++RV I ++ P +L LDE S LD
Sbjct: 132 VQLEE-----FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 8e-20
Identities = 55/179 (30%), Positives = 97/179 (54%), Gaps = 19/179 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYS------- 224
++GI+ ++ G+ L L+G SGSGK+TL L LL RL+ G I ++
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALL--RLIPSQ--GEIRFDGQDIDGLSRKEM 358
Query: 225 KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ L+ ++ V QD L P +TV + + + P L+ ++++R I+ + E+GL+
Sbjct: 359 RPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLD- 416
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
T + SGG+R+R+ I +I+ P L+ LDEPTS LD + +++ +L+D+
Sbjct: 417 -PATR--NRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL 472
|
Length = 534 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 1e-19
Identities = 64/224 (28%), Positives = 99/224 (44%), Gaps = 38/224 (16%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL------ 227
GIT A+ G SG+GKT+L+N +SG L P G I N +
Sbjct: 24 QGIT---------AIFGRSGAGKTSLINAISG-LTRPQKG-RIVLNGRVLFDAEKGICLP 72
Query: 228 --KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
K +IG+V QD LFPH V+ L Y + K + ++ LG+E D
Sbjct: 73 PEKRRIGYVFQDARLFPHYKVRGNLRYG--------MAKSMVAQFD-KIVALLGIEPLLD 123
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ +SGGE++RV IG ++ P LL +DEP + LD ++ L+ +A
Sbjct: 124 -----RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK-----ASEAM 384
+ + + D++++L +G + FG AS AM
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAM 222
|
Length = 352 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 72/240 (30%), Positives = 108/240 (45%), Gaps = 42/240 (17%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 221
S E+K+IL G+ +V GE+ A+MGP+GSGK+TL ++G G+I +
Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68
Query: 222 --PYSKSLKSK-IGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKE 268
P ++ + F Q P ++ E L A L L + L K K
Sbjct: 69 LEPDERARAGLFLAF--QYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-KLLKA 125
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTS 324
K A+ ++E L R S G SGGE+KR NEI ++ P L LDE S
Sbjct: 126 KLALLGMDEEFLNR--------SVNEGFSGGEKKR----NEILQMALLEPKLAILDEIDS 173
Query: 325 GLDSTTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKAS 381
GLD AL+IV + + + E ++ + H RL + K D + +L G ++ G
Sbjct: 174 GLD-IDALKIVAEGINRLREPDRSFLIITHYQ--RLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 2e-19
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 17/204 (8%)
Query: 160 ILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VG 213
I + S EE+ ++L GI+ + GE++A++G SGSGK+TL+N+L G L +PT V
Sbjct: 10 IRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA 68
Query: 214 GS--ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
G T + ++ + GF+ Q L HLT + + A+ L ++Q+ RA
Sbjct: 69 GQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRA 125
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+++ LGLE + +SGG+++RV I ++ ++ DEPT LDS +
Sbjct: 126 QELLQRLGLEDRVEYQPS-----QLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQP 355
++ +L + + G TV+ H P
Sbjct: 181 EEVMAILHQLRDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 4e-19
Identities = 63/219 (28%), Positives = 103/219 (47%), Gaps = 23/219 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
IL G++ V GEV ++G +G GKTTLL L G L P GSI + +K
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL--PVKSGSIRLDGEDITKLPPHER 72
Query: 227 LKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINEL--GLERC 283
++ I +V Q +FP LTV+E L T A L ++ ++ D I EL L+
Sbjct: 73 ARAGIAYVPQGREIFPRLTVEENLLTGLAALP--------RRSRKIPDEIYELFPVLKEM 124
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
GG +SGG+++++ I ++ P LL LDEPT G+ + I ++++ +
Sbjct: 125 LGRR-GGD----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 344 AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
G + + Q D+ ++ +G ++ G E
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 6e-19
Identities = 77/230 (33%), Positives = 119/230 (51%), Gaps = 31/230 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYS 224
+ ILNGI+ ++ G+ +A++G SG+GK+T+L LL R + GSIT +
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDVN-SGSITIDGQDIRDVTQ 332
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINEL- 278
+SL+ IG V QD VLF + T+ + Y T ++ A D I L
Sbjct: 333 QSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386
Query: 279 -GLERCQDTMIGGSFVRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
G DT +G RG +SGGE++RV I I+ NP +L LDE TS LD+ T I
Sbjct: 387 EGY----DTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L++++ AG+T + H+ S+ + D++I+L G ++ G E +A
Sbjct: 440 AALREVS-AGRTTLVIAHRLSTII--DADEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 9e-19
Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 25/241 (10%)
Query: 161 LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
L G++ S +K ++NG++ +V GE L+GP+G+GK+T+ ++ G M G IT
Sbjct: 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILG--MTSPDAGKITVL 101
Query: 220 DHPY---SKSLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVI 275
P ++ +++IG V Q D L TV+E L + + ++ + I +
Sbjct: 102 GVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGM-----STREIEAVIPSL 156
Query: 276 NELG-LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
E LE D V +SGG ++R+ + +I +P LL LDEPT+GLD I
Sbjct: 157 LEFARLESKADAR-----VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211
Query: 335 VQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
+ L+ + GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 212 WERLRSLLARGKTILLTTHFMEEAERL---CDRLCVLEAGRKIAEGRPHALID--EHIGC 266
Query: 393 S 393
Sbjct: 267 Q 267
|
Length = 340 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 1e-18
Identities = 70/242 (28%), Positives = 108/242 (44%), Gaps = 57/242 (23%)
Query: 124 DDI---PEDIEAGTRERPKFQTEPT--LPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
DD+ P D E P +EP+ L Y++ ++T+ S E ++ +
Sbjct: 447 DDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY------SPLEPPLIENFSL 500
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKS-LKSKIGFV 234
++ PG+ +AL+G SGSGK+T+ L++G L +P G I ++ P + L + + V
Sbjct: 501 TLQPGQRVALVGGSGSGKSTIAKLVAG-LYQPW-SGEILFDGIPREEIPREVLANSVAMV 558
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMI----- 288
QD LF TV++ LT L + I + L R C+D I
Sbjct: 559 DQDIFLFEG-TVRDNLT------LWD------------PTIPDADLVRACKDAAIHDVIT 599
Query: 289 ------------GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GG +SGG+R+R+ I ++ NPS+L LDE TS LD T I
Sbjct: 600 SRPGGYDAELAEGG---ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDD 656
Query: 337 ML 338
L
Sbjct: 657 NL 658
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 2e-18
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 50/188 (26%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----S 224
K + ++ V GE++ + G G+G+T L L G + P G IT + P
Sbjct: 13 KGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG--LRPPASGEITLDGKPVTRRSPR 70
Query: 225 KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
++++ I +V +D + L L+V E + ++LL
Sbjct: 71 DAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLL------------------------- 105
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
SGG +++V + + +P +L LDEPT G+D I ++++++
Sbjct: 106 ---------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL 150
Query: 342 AEAGKTVV 349
A+AGK V+
Sbjct: 151 ADAGKAVL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 2e-18
Identities = 54/160 (33%), Positives = 90/160 (56%), Gaps = 10/160 (6%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
+LN I+ + G+++AL+GPSGSGKTTLL +++G +E G I ++ S+ +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG--LEHQTSGHIRFHGTDVSRLHARDR 74
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 288
K+GFV Q LF H+TV + + + L LP +++ AI + +L LE Q +
Sbjct: 75 KVGFVFQHYALFRHMTVFDNIAF-GLTVLPR---RERPNAAAIKAKVTQL-LEMVQLAHL 129
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+ +SGG+++RV + + + P +L LDEP LD+
Sbjct: 130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDA 169
|
Length = 353 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-18
Identities = 33/82 (40%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+V +SGG+R+RV + +++NP LL LDEPTSGLD + R++++L+++AE G+TV+
Sbjct: 76 GYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVII 135
Query: 351 TIHQPSSRLFHKFDKLILLGKG 372
H P D++I+L G
Sbjct: 136 VTHDPEL-AELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 2e-18
Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKS 229
L I+ SV GE + L+GPSG GKTTLL +++G L T G+I ++ K
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQT-AGTIYQGGRDITRLPPQKR 76
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMI 288
G V Q LFP+LTV + + Y L + + + + EL L+
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYG--------LKNRGMGRAEVAERVAEL-LDLVGLPGS 127
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+ +SGG+++RV + + +P LL LDEP S LD+ + ++ + +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR--RLG 185
Query: 349 VTTI 352
VTTI
Sbjct: 186 VTTI 189
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-18
Identities = 46/181 (25%), Positives = 88/181 (48%), Gaps = 16/181 (8%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSLKSKIGF 233
+V GE+L + G G+G+T L L G P G I + P ++K+ I +
Sbjct: 281 TVRAGEILGIAGLVGAGRTELARALFG--ARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338
Query: 234 VTQD---DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELGLERCQDTMI 288
V +D + L +++ E +T A+L R ++++RA+ I L + +
Sbjct: 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI-KTPSP-- 395
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+ +SGG +++V + + +P +L LDEPT G+D I ++++++A GK +
Sbjct: 396 -EQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAI 454
Query: 349 V 349
+
Sbjct: 455 L 455
|
Length = 500 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 5e-18
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 17/219 (7%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 228
L+G+ +V PGE +AL+GPSG+GK+TL LL R +P G I + L+
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQ-SGRILLDGVDLRQLDPAELR 413
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
+++ V QD VLF +V E + Y + + A + I L DT +
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRPDATDEEVEAAARAAHAHEFI--SALPEGYDTYL 470
Query: 289 GGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G RGV SGG+R+R+ I I+ + +L LDE TS LD+ + ++VQ + G+
Sbjct: 471 GE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGR 526
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
T + H+ ++ L K D+++++ +G ++ G +E +A
Sbjct: 527 TTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 5e-18
Identities = 65/198 (32%), Positives = 103/198 (52%), Gaps = 30/198 (15%)
Query: 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
VT + + K + + I I ++ GE + +GPSG GK+TLL +++G L + T
Sbjct: 2 ASVTLRNVTK---AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITS 57
Query: 213 G----GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE 268
G G ND P ++ +G V Q L+PHL+V E +++ L+L K++
Sbjct: 58 GDLFIGEKRMNDVPPAER---GVGMVFQSYALYPHLSVAENMSFG--LKLAGA-KKEEIN 111
Query: 269 KRAIDV--INELG--LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+R V + +L L+R + +SGG+R+RV IG ++ PS+ LDEP S
Sbjct: 112 QRVNQVAEVLQLAHLLDRKP---------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162
Query: 325 GLDSTTALRIVQMLQDIA 342
LD+ ALR VQM +I+
Sbjct: 163 NLDA--ALR-VQMRIEIS 177
|
Length = 369 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 6e-18
Identities = 50/189 (26%), Positives = 86/189 (45%), Gaps = 17/189 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS-L 227
+ + +G++ ++ GE L L GP+GSGKTTLL L++G L P G+I + +
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL--PPAAGTIKLDGGDIDDPDV 71
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++ + + P LTV E L + AA L +E + +GL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPLAHL 123
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G +S G+++RV + ++ N + LDEPT+ LD+ ++++ G
Sbjct: 124 PFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 347 TVVTTIHQP 355
V+ H P
Sbjct: 179 IVIAATHIP 187
|
Length = 207 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 6e-18
Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
EK L IT S+ V AL+GPSG GK+TLL N ++ + + G I YN
Sbjct: 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
S L+ KIG V Q FP ++ E + Y + +K K+ +D I E
Sbjct: 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIH-------GEKNKKTLDTIVEKS 129
Query: 280 L----------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
L +R D+ + +SGG+++R+CI + +NP ++ +DEP S LD
Sbjct: 130 LKGAALWDEVKDRLHDSALS------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 330 TALRIVQMLQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+I +++D+ + TV+ H Q ++R+ + + LGK L+ F K ++
Sbjct: 184 ATAKIEDLIEDLKKE-YTVIIVTHNMQQAARV-SDYTGFMYLGK--LIEFDKTTQ 234
|
Length = 253 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 84.9 bits (210), Expect = 7e-18
Identities = 60/201 (29%), Positives = 93/201 (46%), Gaps = 20/201 (9%)
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
L+GPSG GKTTLL LL+G +P G G N P+ + I V Q LFP
Sbjct: 1 LLGPSGCGKTTLLRLLAG-FEQPDSGSIMLDGEDVTNVPPHLRH----INMVFQSYALFP 55
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302
H+TV+E + + +R K + + V+ L L + ++ +SGG+++
Sbjct: 56 HMTVEENVAFGLKMR------KVPRAEIKPRVLEALRLVQLEE--FADRKPHQLSGGQQQ 107
Query: 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFH 361
RV + ++ P +L LDEP S LD ++ L+ I E G T V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 362 KFDKLILLGKGSLLYFGKASE 382
D++ ++ KG + G E
Sbjct: 168 S-DRIAIMRKGKIAQIGTPEE 187
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 83.8 bits (207), Expect = 1e-17
Identities = 67/230 (29%), Positives = 111/230 (48%), Gaps = 22/230 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+K ++N ++ ++ GE L+GP+G+GK+T+ +L G M G IT P ++
Sbjct: 16 DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG--MISPDRGKITVLGEPVPSRAR 73
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETL-TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ IG V Q D L P TV+E L + + + ++ E ++ LE
Sbjct: 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM----STREIEAVIPSLLEFARLESKA 129
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D V +SGG ++R+ + +I +P LL LDEPT+GLD I + L+ +
Sbjct: 130 DVR-----VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184
Query: 345 GKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGC 392
GKT++ T H + + RL D+L +L G + G+ + IGC
Sbjct: 185 GKTILLTTHFMEEAERL---CDRLCVLESGRKIAEGRPHALID--EQIGC 229
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 1e-17
Identities = 69/251 (27%), Positives = 119/251 (47%), Gaps = 44/251 (17%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YS 224
+ + L GI N E+ AL+GPSG GK+T L N ++ + T+ G+++ Y+
Sbjct: 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ L+ ++G V Q FP ++ E + Y LRL K+K +D E
Sbjct: 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYG--LRL-----AGVKDKAVLDEAVETS 128
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + +D + + +SGG+++RVCI + + P ++ LDEPTS LD ++ +
Sbjct: 129 LKQAAIWDEVKDHLHESAL--SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQ 186
Query: 334 IVQMLQDIAEAGKTVVTT--IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
I ML ++ + ++ T +HQ +SR+ DK G+L+ F
Sbjct: 187 IENMLLELRDQYTIILVTHSMHQ-ASRI---SDKTAFFLTGNLIEFAD------------ 230
Query: 392 CSPQIAMNPAE 402
+ Q+ +NP E
Sbjct: 231 -TKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-17
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 23/223 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK----S 226
L GI ++ GEV A++G +G+GK+TL L+G +++P G I ++ P YS+
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNG-ILKP-SSGRILFDGKPIDYSRKGLMK 79
Query: 227 LKSKIGFVTQ--DDVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ +G V Q D+ LF +V + +++ A+ L+LP + + KR + + G+E
Sbjct: 80 LRESVGMVFQDPDNQLFS-ASVYQDVSFGAVNLKLP----EDEVRKRVDNALKRTGIEHL 134
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA- 342
+D +S G++KRV I +++ P +L LDEPT+GLD I+++L ++
Sbjct: 135 KDKP-----THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK 189
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
E G T++ H + D + ++ +G ++ G E A
Sbjct: 190 ELGLTIIIATHDIDIVPLY-CDNVFVMKEGRVILQGNPKEVFA 231
|
Length = 283 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 4e-17
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 18/199 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL-MEPTV--GGSITYNDHPYSKS--- 226
L I S+ EV A++GPSG GK+T + L+ + M P V G + YN K
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 227 ---LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ IG V Q FP ++ + + Y R+ T K++ ++ + ++ L +
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDE 144
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D + + +SGG+++R+CI + NP +L +DEPTS LD + +I +++ +
Sbjct: 145 VKDRLHTQAL--SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK 202
Query: 343 EAGKTVVTTIH--QPSSRL 359
E T+V H Q ++R+
Sbjct: 203 EK-YTIVIVTHNMQQAARV 220
|
Length = 259 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 4e-17
Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+ ++ SV GE+ AL+G +G+GK+TL+ +L G L +P G I + ++
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFG-LYQPD-SGEIRVDGKEVRIKSPRDAI 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ IG V Q +L P LTV E + + ++Q R ++ GL D
Sbjct: 78 RLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPD-- 135
Query: 288 IGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ V +S GE++RV EI+ LL LDEPT+ L A + ++L+ +A
Sbjct: 136 ---AKVADLSVGEQQRV----EILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA 188
Query: 344 AGKTVV 349
GKT++
Sbjct: 189 EGKTII 194
|
Length = 501 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 4e-17
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 29/230 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSI------TYN 219
EK + +T + ++ A++GPSG GKTTLL N ++ + V G I Y+
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ K+G V Q FP +++ + + + R+ K K +D I E
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGV-----KSKHKLDRIVEES 126
Query: 280 LERC-------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
L++ + G+ +SGG+++R+CI + + P ++ LDEPTS LD
Sbjct: 127 LKKAALWDEVKSELNKPGT---RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQ 183
Query: 333 RIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
RI ++L++++E T+V H + D + + +G L+ +G E
Sbjct: 184 RIEKLLEELSEN-YTIVIVTHNIGQAI-RIADYIAFMYRGELIEYGPTRE 231
|
Length = 250 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 4e-17
Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 24/223 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPTVGGSITYNDHPYSKS----- 226
L+ + +++ GE++AL+GPSGSGK+TLL LSG + + + G I +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVIN 276
++ G++ Q L L+V E + AL P + T++QK+ RA+ +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQ-RALQALT 138
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
+G+ V +SGG+++RV I ++ ++ DEP + LD +A ++
Sbjct: 139 RVGMVH-----FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 337 MLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
L+DI + G TVV T+HQ L + ++++ L +G + Y G
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYALRY-CERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 5e-17
Identities = 55/238 (23%), Positives = 97/238 (40%), Gaps = 37/238 (15%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
KG E L I+ + GE + ++G +G+GK+TLL L++G + +PT G +
Sbjct: 31 AKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAG-IYKPT-SGKVKVT- 87
Query: 221 HPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN--E 277
+ I F P LT +E + L+ LT+++ +++ ++I E
Sbjct: 88 ----GKVAPLIEL----GAGFDPELTGRENIYLRGLI---LGLTRKEIDEKVDEIIEFAE 136
Query: 278 LGLERCQDTMIGGSF----VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L G F V+ S G R+ + P +L LDE + D+ +
Sbjct: 137 L-----------GDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEK 185
Query: 334 IVQMLQDIAEAGKTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
++ L ++ E KT+V H + D+ I L G + G E + +
Sbjct: 186 CLERLNELVEKNKTIVLVSHDLGAIKQY---CDRAIWLEHGQIRMEGSPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 6e-17
Identities = 62/218 (28%), Positives = 112/218 (51%), Gaps = 13/218 (5%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKSLK 228
I++G+ + PG + L+GP+GSGK+TLL LL+G G++ + H S+ +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAG--ALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 229 S-KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ ++ V QD LTV++ + AL R+P+ + + + + L R + +
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVV---ALGRIPH-RSLWAGDSPHDAAVVDRALARTELSH 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
+ + +SGGER+RV + + P LL LDEPT+ LD L + +++++A G T
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189
Query: 348 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 384
VV +H + L + D +++L G ++ G E +
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 7e-17
Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 43/239 (17%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLA 187
ED R+ P + ++F DV++ + ++ PG+ +A
Sbjct: 313 EDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQG-------VEDVSFEAKPGQTVA 365
Query: 188 LMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKSLKSKIGFVTQDD 238
++GP+G+GK+TL+NLL R+ +P G ++T SL+ I V QD
Sbjct: 366 IVGPTGAGKSTLINLLQ-RVFDPQSGRILIDGTDIRTVTR------ASLRRNIAVVFQDA 418
Query: 239 VLF-----PHLTV-KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
LF ++ V + T + + +A D I DT++G
Sbjct: 419 GLFNRSIEDNIRVGRPDATDEEMRA-------AAERAQAHDFI--ERKPDGYDTVVGE-- 467
Query: 293 VRG--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
RG +SGGER+R+ I ++ +P +L LDE TS LD T ++ L ++ + T +
Sbjct: 468 -RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFI 525
|
Length = 588 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 8e-17
Identities = 67/246 (27%), Positives = 121/246 (49%), Gaps = 21/246 (8%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ + +LN ++ S+ GE +AL+G SG GK+TL LL G L P+ G++++ P +
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPS-QGNVSWRGEPLAKL 79
Query: 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
K+ + I V QD + + P TV+E + LR +L K ++ RA +++
Sbjct: 80 NRAQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRA 137
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ L D + +SGG+ +RVC+ + + P LL LDE S LD ++++
Sbjct: 138 VDL----DDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRL 193
Query: 338 LQDIAEAGKTVVTTI-HQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYFSSIGCSPQ 395
L+ + + T I H RL +F +++++ G ++ + + + S G Q
Sbjct: 194 LKKLQQQFGTACLFITH--DLRLVERFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQ 251
Query: 396 IAMNPA 401
A+ PA
Sbjct: 252 NAVLPA 257
|
Length = 268 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 8e-17
Identities = 61/230 (26%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYN-DHPYS 224
EK LN I + ++ AL+GPSG GK+T L N ++ + + G + + + Y
Sbjct: 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYD 75
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP +++ + + Y R+ K+K+ +D I E
Sbjct: 76 KDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGP--RIHGI-----KDKKELDKIVEWA 127
Query: 280 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L++ +D + + +SGG+++R+CI I + P ++ +DEPTS LD + L+
Sbjct: 128 LKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLK 185
Query: 334 IVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++ ++ + V+ T + Q +SR+ + L+G L+ F K +
Sbjct: 186 IEDLMVELKKEYTIVIVTHNMQQASRV-SDYTAFFLMGD--LIEFNKTEK 232
|
Length = 251 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 9e-17
Identities = 58/204 (28%), Positives = 101/204 (49%), Gaps = 20/204 (9%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKT----TLLNLLSGRLMEPTVGGSITYND 220
+ + GI+ + GE LAL+G SGSGK+ ++L LL GSI ++
Sbjct: 18 QEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDG 76
Query: 221 HPYSKSLKS--------KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKR 270
+ + KIG + Q+ + L P T+ + L A +LRL L++ R
Sbjct: 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARAR 134
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
A++++ +G+ + + ++ +SGG+R+RV I + P LL DEPT+ LD T
Sbjct: 135 ALELLELVGIPEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192
Query: 331 ALRIVQMLQDI-AEAGKTVVTTIH 353
+I+ +L+++ AE G ++ H
Sbjct: 193 QAQILDLLKELQAELGMAILFITH 216
|
Length = 534 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 65/239 (27%), Positives = 121/239 (50%), Gaps = 26/239 (10%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
K +V++ + E + L ++ +N GE +A++G +GSGK+T+ +L+G L++P
Sbjct: 9 KVENVSFSY------PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTG-LLKP 61
Query: 211 TVGG----SITYNDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G IT + + ++ KIG + Q+ D F TV++ + + L N
Sbjct: 62 QSGEIKIDGITISKENLKE-IRKKIGIIFQNPDNQFIGATVEDDIAFG----LENKKVPP 116
Query: 266 QKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+K K I D+ ++G+E D + +SGG+++RV I + + +NP ++ DE TS
Sbjct: 117 KKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQRVAIASVLALNPEIIIFDESTS 171
Query: 325 GLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
LD I +++ D+ + KT+++ H + DK+I+ +G L+ GK E
Sbjct: 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKE 228
|
Length = 271 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-16
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 27/199 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTV--GGSITYN----- 219
E L I ++ EV A++GPSG GK+T + L+ R++E P+V G I Y
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLN-RMVELVPSVKTTGKILYRDQNIF 94
Query: 220 DHPYSKS-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
D YS L++ +G V Q FP ++ + +TY P K+K+ +D I E
Sbjct: 95 DKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYG-----PKI--HGIKDKKTLDEIVEK 146
Query: 279 GL------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
L + +D + ++ G+SGG+++R+CI + I P ++ +DEPTS LD + L
Sbjct: 147 SLRGAAIWDELKDRLHDNAY--GLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
Query: 333 RIVQMLQDIAEAGKTVVTT 351
++ +++Q++ + ++ T
Sbjct: 205 KVEELVQELKKDYSIIIVT 223
|
Length = 271 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 1e-16
Identities = 59/218 (27%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSL 227
+L+G+ SV G ++ L+GP+G+GKTTLL ++G + PT G ++ +++
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAING-TLTPTAG-TVLVAGDDVEALSARAA 75
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
++ V QD L V++ + R P+ ++ E +ER
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMG---RTPH-RSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
V +SGGER+RV + + +L LDEPT+ LD +R +++++ + + GKT
Sbjct: 132 FADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKT 191
Query: 348 VVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAM 384
V IH L ++ D+L+LL G + G ++ +
Sbjct: 192 AVAAIHDLD--LAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-16
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
E+ + G++ ++N GE L + GP+G GKTTLL +L+G L+ P G + +N ++
Sbjct: 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-LLRPD-SGEVRWNGTALAEQRD 69
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLT-YAALLRLPNTLTKQQKEKRAI-DVINELGLERC 283
I ++ L P L+ E L +AA+ +R I D + +GL
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIH---------GGAQRTIEDALAAVGLTGF 120
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+D +S G+++R+ + + L LDEPT+ LD + +L+
Sbjct: 121 EDLP-----AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 344 AGKTVVTTIHQP 355
G V+ T HQ
Sbjct: 176 RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 24/220 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKI- 231
++ V GE+L L+GP+G+GK+TLL ++G L GSI + P +S + ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGS---GSIQFAGQPLEAWSAAELARHR 71
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
+++Q + V + LT L P+ + +V LGL D + G
Sbjct: 72 AYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGL---DDKL--GR 122
Query: 292 FVRGVSGGERKRVCIGNEII-----INPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
V +SGGE +RV + ++ INP+ LL LDEP + LD + ++L ++ +
Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
G VV + H + D++ LL +G LL G+ E +
Sbjct: 183 GIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 60/203 (29%), Positives = 98/203 (48%), Gaps = 20/203 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L+ + V PGE L + G SG+GKT+LL L+G + P G I+ S +
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRISMPAD-------SAL 458
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-G 290
F+ Q P T++E L Y PN + + V++++GL + +
Sbjct: 459 LFLPQR-PYLPQGTLREALCY------PNAAPDFS-DAELVAVLHKVGLGDLAERLDEED 510
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+ R +SGGE++R+ ++ P +FLDE TS LD T R+ Q+L++ TV++
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVIS 569
Query: 351 TIHQPSSRLFHKFDKLILLGKGS 373
H+P+ FH +L LL
Sbjct: 570 VGHRPTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 3e-16
Identities = 58/198 (29%), Positives = 92/198 (46%), Gaps = 20/198 (10%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
S + GE+L L+GP+G+GKTTLL + G + P G++ K IG+V Q
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILG--LIPPAKGTVKVAGASPGKG-WRHIGYVPQRH 58
Query: 239 VL---FP----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
FP H + + LR P + A+ L R T +
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRP-----CVADFAAVRD----ALRRVGLTELADR 109
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
V +SGG+R+RV + + PS+L LDEP +GLD T + ++ ++A AG ++ T
Sbjct: 110 PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMT 169
Query: 352 IHQPSSRLFHKFDKLILL 369
H + + D+++LL
Sbjct: 170 THDLAQAM-ATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 3e-16
Identities = 51/185 (27%), Positives = 82/185 (44%), Gaps = 42/185 (22%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
+ +L ++ ++NPGE + L+G +G+GK+TLL +L+G L EP G +T
Sbjct: 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPD-SGEVTR-PKGL------ 66
Query: 230 KIGFVTQDDVLFPHLTVKETLT------YAALLRLP--------------NTLTKQQKEK 269
++G+++Q+ L P TV + + L L L +E
Sbjct: 67 RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 270 -------RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
RA + + LG + S SGG R+RV + ++ P LL LDEP
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPV--SSL----SGGWRRRVALARALLEEPDLLLLDEP 180
Query: 323 TSGLD 327
T+ LD
Sbjct: 181 TNHLD 185
|
Length = 530 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 3e-16
Identities = 54/219 (24%), Positives = 106/219 (48%), Gaps = 19/219 (8%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ +L ++ S+ GE + L+G SG GK+TL LL G L +P G++++
Sbjct: 21 KQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPA-QGTVSFRGQDLYQL 78
Query: 225 -----KSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
++ + + V QD + P +TV++ + LR +L + +++ R ++++
Sbjct: 79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDM 136
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+GL + R +SGG+ +R+ I + + P L+ LDE S LD I+++
Sbjct: 137 VGL----RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILEL 192
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 375
L+ + +A T I RL F ++ ++ KG ++
Sbjct: 193 LRKLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIV 230
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 25/201 (12%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
EK LNG++ + G+ + ++G +G+GK+TLLN ++G L PT G I + +K
Sbjct: 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK-PT-SGQILIDGVDVTKKS 74
Query: 228 KSK----IGFVTQD--DVLFPHLTVKETLTYAAL--------LRLPNTLTKQQKEKRAID 273
+K + V QD P LT++E L A L +E+ A
Sbjct: 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA-- 132
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
LGLE IG +SGG+R+ + + + P +L LDE T+ LD TA
Sbjct: 133 -RLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 334 IVQMLQDIAEAGK-TVVTTIH 353
++++ I E K T + H
Sbjct: 187 VMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-16
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 31/227 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITY-NDHPYSK--- 225
L I + +V AL+GPSG GK+T L L+ L+ + G + Y
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--- 280
L+ ++G V Q FP +++ + + Y P T K+K+ +D I E L
Sbjct: 79 VNQLRKRVGMVFQQPNPFP-MSIYDNVAYG-----PRT--HGIKDKKKLDEIVEKSLKGA 130
Query: 281 ---ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ +D + + G+SGG+++R+CI + + P +L +DEPTS LD + L+I ++
Sbjct: 131 ALWDEVKDRLKKSAL--GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEEL 188
Query: 338 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+Q++ + T+V H Q +SR+ DK G ++ FG +
Sbjct: 189 IQEL-KKDYTIVIVTHNMQQASRI---SDKTAFFLNGEIVEFGDTVD 231
|
Length = 250 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.6 bits (193), Expect = 4e-16
Identities = 63/227 (27%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-----PTVGGSITYNDHP 222
+K IL IT + + +MGPSGSGK+TLL +L+ RL+E V G + Y
Sbjct: 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLN-RLIEIYDSKIKVDGKVLYFGKD 79
Query: 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVIN 276
+ L+ ++G V Q FPHL++ + + Y L + K+++E + I + +
Sbjct: 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECLR 135
Query: 277 ELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
++GL + D + S +SGG+++R+ I + + P +L +DEPTS +D + I
Sbjct: 136 KVGLWKEVYDRL--NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 336 QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++ ++ +V H P ++ D + L G L+ +G ++E
Sbjct: 194 KLITELKNE-IAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNE 238
|
Length = 257 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 4e-16
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 22/184 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYN-----DHPYSKS 226
L+ ++ +N GE++ L+G +G+GKTTLL L G +P G I ++ D +K
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQTAKI 77
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-- 284
++ + V + +F +TV+E L Q++ K ++ L R Q
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQRA 135
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
TM SGGE++ + IG ++ P LL LDEP+ GL +I ++ + E
Sbjct: 136 GTM---------SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 345 GKTV 348
G T+
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-16
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 19/198 (9%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSI---TYNDH 221
+L ++ +VN GE +AL GPSG+GK+TLL L SGR++ G + +
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 222 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 280
+ + IG+V+Q + P ++ E + L R + ++ RA +++ L +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIP 139
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
ER + +F SGGE++RV I I + +L LDEPT+ LD+ +V+++ +
Sbjct: 140 ERLWH-LPPATF----SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194
Query: 341 IAEAGKTVVTTIHQPSSR 358
G ++ H R
Sbjct: 195 AKARGAALIGIFHDEEVR 212
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 5e-16
Identities = 54/201 (26%), Positives = 98/201 (48%), Gaps = 18/201 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT----------Y 218
+K + + V G V AL+GPSG GKTT L ++ R+ + T G +T Y
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAIN-RMHDLTPGARVTGRILLDGQDIY 74
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+++ ++G V Q FP ++V + + A L+L + + A +
Sbjct: 75 GPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGA 132
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + + G+SGG+++R+CI + + P +L +DEPTS LD + RI +
Sbjct: 133 ALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDL 190
Query: 338 LQDIAEAGKTVVTT--IHQPS 356
+ D+ + ++ T +HQ +
Sbjct: 191 MTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 6e-16
Identities = 60/237 (25%), Positives = 122/237 (51%), Gaps = 25/237 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F +V+Y KG + E ++ + G+ A++G +GSGK+TL+ ++ L++
Sbjct: 3 IRFDNVSY-TYQKG--TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINA-LLK 58
Query: 210 PTVGGSITYND--------HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261
PT G ++T +D Y + ++ +IG V Q FP + E ++ P
Sbjct: 59 PTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVFQ----FPESQLFEDTVEREIIFGPKN 113
Query: 262 LTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319
E A ++ +LG R D M F +SGG+ +++ I + + +NP ++ L
Sbjct: 114 FKMNLDEVKNYAHRLLMDLGFSR--DVMSQSPF--QMSGGQMRKIAIVSILAMNPDIIVL 169
Query: 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375
DEPT+GLD + +++++L+ + + KT++ H + + D++I++ +GS++
Sbjct: 170 DEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD-MNEVARYADEVIVMKEGSIV 225
|
Length = 286 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (196), Expect = 8e-16
Identities = 58/213 (27%), Positives = 101/213 (47%), Gaps = 16/213 (7%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-------TYNDHPYSKSLKSKI 231
++ GE+ +MG SGSGK+T++ LL+ RL+EPT G + +D + + KI
Sbjct: 50 AIEEGEIFVIMGLSGSGKSTMVRLLN-RLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
V Q L PH+TV + + + L ++++EK A+D + ++GLE S
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFG--MELAGINAEERREK-ALDALRQVGLEN-----YAHS 160
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+ +SGG R+RV + + INP +L +DE S LD + L + + +
Sbjct: 161 YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVF 220
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
I D++ ++ G ++ G E +
Sbjct: 221 ISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 8e-16
Identities = 76/274 (27%), Positives = 140/274 (51%), Gaps = 34/274 (12%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F+ D+ ++ + G R + + + ++F +VT+ K E L I +
Sbjct: 319 FAILDLEQEKDEGKRVIERAKGD------IEFRNVTFTYPGK------EVPALRNINFKI 366
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS-KSLKSKIGFVTQ 236
G+ +AL+G SGSGK+T+ NLL+ R + G I + H Y+ SL++++ V+Q
Sbjct: 367 PAGKTVALVGRSGSGKSTIANLLT-RFYDID-EGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGS 291
+ LF + T+ + YA +++Q E+ A+D IN ++ DT+IG +
Sbjct: 425 NVHLF-NDTIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN 477
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
V +SGG+R+R+ I ++ + +L LDE TS LD T + R +Q D + +T +
Sbjct: 478 GVL-LSGGQRQRIAIARALLRDSPILILDEATSALD-TESERAIQAALDELQKNRTSLVI 535
Query: 352 IHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
H+ S+ K D+++++ G ++ G +E +A
Sbjct: 536 AHRLST--IEKADEILVVEDGEIVERGTHAELLA 567
|
Length = 582 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 40/211 (18%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDH-------- 221
L+ ++ +N GE +A++G +GSGKTT + L+ L+ T G+I + ++
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT--GTIEWIFKDEKNKKKTKEK 80
Query: 222 -----------PYSKSLKS------KIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTL 262
K +K ++G V Q + LF T+++ + + + +
Sbjct: 81 EKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ-TIEKDIIFGPV---SMGV 136
Query: 263 TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322
+K++ +KRA I +GL+ + + F +SGG+++RV + + + P L DEP
Sbjct: 137 SKEEAKKRAAKYIELVGLD--ESYLQRSPF--ELSGGQKRRVALAGILAMEPDFLVFDEP 192
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
T+GLD I+++ ++ + GKT++ H
Sbjct: 193 TAGLDPQGVKEILEIFDNLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 80.2 bits (198), Expect = 1e-15
Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225
+ ++L+ + + PGE + ++GPSGSGK+TL LL RL P G + + +
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ-RLYTPQHG-QVLVDGVDLAIAD 525
Query: 226 --SLKSKIGFVTQDDVLF------------PHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
L+ ++G V Q++VLF P E + +AA L A
Sbjct: 526 PAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPF-EHVIHAAKL------------AGA 572
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
D I L + +T +G +SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 573 HDFI--SELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I++ +++I G+TV+ H+ S+ D++I+L KG + G+ E +A
Sbjct: 630 ALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-15
Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 33/174 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
IL+ ++ + PGE +A++GPSGSGK+TLL LL G E GS+ Y+ + ++
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG--FETPESGSVFYDGQDLAGLDVQAV 525
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
+ ++G V Q+ L ++ E + A L L A + GL +D
Sbjct: 526 RRQLGVVLQNGRLMSG-SIFENIAGGAPLTL----------DEAWEAARMAGLA--EDIR 572
Query: 286 -------TMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
T+I GG +SGG+R+R+ I ++ P +L DE TS LD+ T
Sbjct: 573 AMPMGMHTVISEGGG---TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT 623
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 26/201 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSI------TYNDH 221
++ G+ + V ALMGPSG GK+TLL + RL+E V G + Y+
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFN-RLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 222 PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL- 280
++ ++G V Q FPHLT+ + + L N L K +KE +D E L
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKL---NGLVKSKKE---LDERVEWALK 131
Query: 281 -----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+ +D + + +SGG+R+R+ I + + P +L +DEPT+ +D +I
Sbjct: 132 KAALWDEVKDRL--NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189
Query: 336 QMLQDIAEAGKTVVTTIHQPS 356
++L ++ + T+V H P+
Sbjct: 190 ELLFELKKE-YTIVLVTHSPA 209
|
Length = 253 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 159 VILKGMTSSEEKD-ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SI 216
V+LK +T + +++ + ++ G ++ L+GPSG GKTT+L L++G L +PT G I
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFI 65
Query: 217 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVI 275
D + + I V Q LFPH+++ E + Y +L +P KQ+ K A++++
Sbjct: 66 DGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRV-KEALELV 124
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
+ G E +V +SGG+++RV + +I+ P +L DEP S LD+ LR
Sbjct: 125 DLAGFED--------RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN--LR-R 173
Query: 336 QMLQDIAEAGKTVVTT---IHQPSSRLFHKFDKLILLGKGSL--------LYFGKASEAM 384
M + I E + T + S F D +I++ KG + LY AS M
Sbjct: 174 SMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFM 233
Query: 385 AYF 387
A F
Sbjct: 234 ASF 236
|
Length = 351 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 27/243 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSL 227
EK L+ + + GE + L+G +GSGK+TL+ L+G L++PT G I + K +
Sbjct: 19 EKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNG-LLKPT-SGKIIIDGVDITDKKV 76
Query: 228 K-----SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGL 280
K K+G V Q +P + E + P L ++++ E R +N +GL
Sbjct: 77 KLSDIRKKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGL 132
Query: 281 ERCQDTMIGGS-FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + S F +SGG+++RV I + + P +L LDEPT+GLD I+ ++
Sbjct: 133 DY--EDYKDKSPF--ELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIK 188
Query: 340 DIAEAGK-TVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEA---MAYFSSIGCS- 393
++ + T++ H S K D++I++ KG G E + SIG +
Sbjct: 189 ELHKEYNMTIILVSH--SMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAV 246
Query: 394 PQI 396
PQ+
Sbjct: 247 PQV 249
|
Length = 287 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 2e-15
Identities = 55/192 (28%), Positives = 94/192 (48%), Gaps = 16/192 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG----------SITYNDHP 222
++ ++ V GE+ ++G SG+GKTTL +++G ++EPT G +T
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAG-VLEPTSGEVNVRVGDEWVDMTKPGPD 358
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
K IG + Q+ L+PH TV + LT A L LP+ L + +A+ + +G +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR----MKAVITLKMVGFDE 414
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDI 341
+ I + +S GER RV + +I P ++ LDEPT +D T + + +L+
Sbjct: 415 EKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAR 474
Query: 342 AEAGKTVVTTIH 353
E +T + H
Sbjct: 475 EEMEQTFIIVSH 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.3 bits (187), Expect = 3e-15
Identities = 67/212 (31%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK---SKIG 232
V G AL+G +GSGK+TLL L+G L++PT G G I + K +K K+G
Sbjct: 29 VKKGSYTALIGHTGSGKSTLLQHLNG-LLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERCQDTMIGG 290
V Q FP + E + P + K++ EK A + + +GL +
Sbjct: 88 VVFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKS 141
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
F +SGG+ +RV I + + P +L LDEPT+GLD + ++Q+ + I ++G+TVV
Sbjct: 142 PF--ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H + D + LL KG ++ G S+
Sbjct: 200 VTHLMDDVADYA-DYVYLLEKGHIISCGTPSD 230
|
Length = 288 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 4e-15
Identities = 56/213 (26%), Positives = 93/213 (43%), Gaps = 30/213 (14%)
Query: 128 EDIEAGTRERPKFQTEPTLPIYLKFTD-VTYKVIL--KGMTSS--EEKDILNGITGSVNP 182
E +EA E + L K++L + ++ + +L ++ ++
Sbjct: 288 EKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDR 347
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD-DVLF 241
G+ +A++GP+G+GK+TLL LL+G L P G++ + KIG+ Q D L
Sbjct: 348 GDRIAIVGPNGAGKSTLLKLLAGEL-GPLS-GTVKVGE-------TVKIGYFDQHRDELD 398
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301
P TV E L+ E+ + G + V +SGGE+
Sbjct: 399 PDKTVLEELSEGF---------PDGDEQEVRAYLGRFGF--TGEDQ--EKPVGVLSGGEK 445
Query: 302 KRVCIGNEIIINPSLLFLDEPTSGLD--STTAL 332
R+ + ++ P+LL LDEPT+ LD S AL
Sbjct: 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEAL 478
|
Length = 530 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 60/185 (32%), Positives = 85/185 (45%), Gaps = 27/185 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIG 232
++ GE+ AL+G SG GK+TLL +L+G E G I + PY + I
Sbjct: 41 TIYKGEIFALLGASGCGKSTLLRMLAG--FEQPTAGQIMLDGVDLSHVPPYQRP----IN 94
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA--IDVINE-LGLERCQDTMIG 289
+ Q LFPH+TV++ + + KQ K +A +NE LGL Q+
Sbjct: 95 MMFQSYALFPHMTVEQNIAFG---------LKQDKLPKAEIASRVNEMLGLVHMQE--FA 143
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTV 348
+SGG+R+RV + + P LL LDEP LD R+ + DI E G T
Sbjct: 144 KRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTC 203
Query: 349 VTTIH 353
V H
Sbjct: 204 VMVTH 208
|
Length = 377 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 5e-15
Identities = 65/261 (24%), Positives = 108/261 (41%), Gaps = 52/261 (19%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------- 219
+ K++L I+ ++ GEVL ++G SG+GK+ L+++L G G I Y+
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 220 -----------------------------DHPYSKSLKSKIGFVTQDD-VLFPHLTVKET 249
+ ++ +I + Q L+ TV +
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 250 LTYAALLRLPNTLTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307
+ L + + KE RA+D+I + L + T I R +SGGE++RV +
Sbjct: 131 V-----LEALEEIGYEGKEAVGRAVDLIEMVQLSH-RITHIA----RDLSGGEKQRVVLA 180
Query: 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKL 366
++ P L DEPT LD TA + L++ +G ++V T H P + DK
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKA 239
Query: 367 ILLGKGSLLYFGKASEAMAYF 387
I L G + G E +A F
Sbjct: 240 IWLENGEIKEEGTPDEVVAVF 260
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 16/220 (7%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYS--KSLKSKIG 232
I+ + GE++ +G +G+GK+T L +L+G L+ PT G + N P+ + IG
Sbjct: 43 ISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL-PT-SGKVRVNGKDPFRRREEYLRSIG 100
Query: 233 FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
V Q L+ L ++L +L+L + + +R + L LE
Sbjct: 101 LVMGQKLQLWWDLPALDSLE---VLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP---- 153
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVT 350
VR +S G+R R + ++ P +LFLDEPT GLD I + L++ E TV+
Sbjct: 154 -VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSI 390
T H + D+++L+ +G L++ G ++ F
Sbjct: 213 TTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 5e-15
Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---DHP 222
+ + + +G++ ++ GE L + GP+GSGKTTLL +L+G L P G + N
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG-LSPPL-AGRVLLNGGPLDF 66
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
S+ + ++ + L+V E L + + +Q +E A+ + G E
Sbjct: 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWH----ADHSDEQVEE--ALARVGLNGFED 120
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
V +S G+++RV + ++ L LDEPT+ LD R + +
Sbjct: 121 RP--------VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 343 EAGKTVVTTIHQP 355
G VV T HQ
Sbjct: 173 ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 26/200 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSITYNDHP-YS 224
+K L I+ + V A +GPSG GK+TLL + L++ + G I + Y
Sbjct: 37 DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ ++G V Q FP ++ E + Y LRL +R +D E
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGI-----NNRRVLDEAVERS 148
Query: 280 LERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L +D + +F G+SGG+++R+ I I I P +L LDEPTS LD + L+
Sbjct: 149 LRGAALWDEVKDRLHENAF--GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLK 206
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
I +++ ++ T+V H
Sbjct: 207 IEELITELKSK-YTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 6e-15
Identities = 64/242 (26%), Positives = 106/242 (43%), Gaps = 39/242 (16%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDH 221
E LN I+ + ++ ++G SGSGK+TL+ +G L++ G G I D
Sbjct: 35 QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNG-LIKSKYGTIQVGDIYIGDK 93
Query: 222 PYS---------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TK 264
+ K L+ ++ V Q FP + + ++ P L K
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKDTIEKDIMFGPVALGVKK 149
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLD 320
+ +K A +N++GL S++ G+SGG+++RV I + I P +L D
Sbjct: 150 SEAKKLAKFYLNKMGL--------DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
EPT+GLD ++Q++ D KTV H L D++I++ KG +L G
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGTP 260
Query: 381 SE 382
E
Sbjct: 261 YE 262
|
Length = 320 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 6e-15
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 25/173 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 230
++ GI V GE + L+GPSG GK+TLL +++G +E G I ++ L+
Sbjct: 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG--LERITSGEIWIGGRVVNE-LEPAD 75
Query: 231 --IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV--INELG--LERCQ 284
I V Q+ L+PH++V+E + Y L++ K + E+R + I EL L+R
Sbjct: 76 RDIAMVFQNYALYPHMSVRENMAYG--LKIRGM-PKAEIEERVAEAARILELEPLLDRKP 132
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
R +SGG+R+RV +G I+ P++ DEP S LD+ LR VQM
Sbjct: 133 ---------RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDA--KLR-VQM 173
|
Length = 356 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 7e-15
Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 32/192 (16%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 228
PGEVL ++G SGSGKTTLL +SGRL P G++TY Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLKCISGRLT-PD-AGTVTYRMRDGQPRDLYTMSEAERRRLLR 88
Query: 229 SKIGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER 282
++ GFV Q+ D L ++ + E L N + Q + E+ L+R
Sbjct: 89 TEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEV----EIDLDR 144
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-I 341
D R SGG ++R+ I ++ P L+F+DEPT GLD + R++ +L+ +
Sbjct: 145 IDD------LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 198
Query: 342 AEAGKTVVTTIH 353
E G VV H
Sbjct: 199 RELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 7e-15
Identities = 62/200 (31%), Positives = 89/200 (44%), Gaps = 48/200 (24%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS-------LK 228
PGEVL ++G SGSGKTTLLN LS RL P G + Y Y+ S L+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLA-PD-AGEVHYRMRDGQLRDLYALSEAERRRLLR 88
Query: 229 SKIGFVTQD--DVLFPHLT----VKETLT------YAALLRLPNTLTKQQKEKRAIDVIN 276
++ GFV Q D L ++ + E L Y + A D +
Sbjct: 89 TEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI------------RATAGDWLE 136
Query: 277 --ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
E+ R D SGG ++R+ I ++ +P L+F+DEPT GLD + R+
Sbjct: 137 RVEIDAARIDDL------PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 335 VQMLQD-IAEAGKTVVTTIH 353
+ +L+ + E G VV H
Sbjct: 191 LDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 7e-15
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 17/188 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
L G+T + PGE+ L G SG+GK+TLL L+ G +E G I ++ H ++
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG--IERPSAGKIWFSGHDITRLKNREVP 75
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
L+ +IG + QD L TV + + ++ + +++ A+D + L +
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK--- 132
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+F +SGGE++RV I ++ P++L DEPT LD + I+++ ++ G
Sbjct: 133 -----NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 346 KTVVTTIH 353
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 8e-15
Identities = 50/193 (25%), Positives = 92/193 (47%), Gaps = 23/193 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHP-YS 224
L GI+ + V+A +GPSG GK+T L +L+ +E G I + Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE----GEIRIDGRNIYD 74
Query: 225 KS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
K L+ +G V Q FP ++ E + Y LR+ +R + +
Sbjct: 75 KGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAA 131
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + +F +SGG+++R+CI + ++PS+L +DEP S LD + ++ +++
Sbjct: 132 LWDEVKDKLKESAF--ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
Query: 339 QDIAEAGKTVVTT 351
++ + V+ T
Sbjct: 190 HELKKDYTIVIVT 202
|
Length = 250 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
++N GE++ + GP+G+GKT+LL +L+G L P G + + P + D
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAG-LARPD-AGEVLWQGEPIRRQRDE-----YHQD 75
Query: 239 VLF-PHLT-VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
+L+ H +K LT LR L ++ + + ++GL +D VR +
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----VRQL 130
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
S G+++RV + + L LDEP + +D R+ +L AE G V+ T HQ
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 8e-15
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 20/198 (10%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ S K+ LN I +A++GP+G+GK+TL +G +++PT GS+ P +
Sbjct: 12 SYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNG-ILKPT-SGSVLIRGEPIT 69
Query: 225 KS----LKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINE 277
K ++ +G V Q DD +F TV++ + + + N L ++ R ++
Sbjct: 70 KENIREVRKFVGLVFQNPDDQIFSP-TVEQDIAFGPI----NLGLDEETVAHRVSSALHM 124
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LGLE +D + +SGGE+KRV I I + P +L LDEPT+GLD ++
Sbjct: 125 LGLEELRDRV-----PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 338 LQDIAEA-GKTVVTTIHQ 354
L D+ E G TV+ + HQ
Sbjct: 180 LNDLPETYGMTVIFSTHQ 197
|
Length = 277 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 8e-15
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225
E+ + + ++ ++N GE L + GP+G+GKTTLL +L+G L+ P G + + P +
Sbjct: 14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLRPD-AGEVYWQGEPIQNVRE 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
S + ++ + LT E L + + + ++GL +D
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFW------QRFHGSGNAATIWEALAQVGLAGLED 125
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V +S G+++RV + + L LDEP + LD + ++ A G
Sbjct: 126 LP-----VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQG 180
Query: 346 KTVVTTIHQPSS 357
V+ T HQP
Sbjct: 181 GIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 9e-15
Identities = 55/210 (26%), Positives = 107/210 (50%), Gaps = 16/210 (7%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----YSKSLKSKIGFVTQD 237
G+ LA++G +GSGK+TL +L+G ++EPT G I NDHP YS K +I + QD
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGEILINDHPLHFGDYSFRSK-RIRMIFQD 95
Query: 238 --DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
L P L + + L LRL L +Q+ K+ + + +GL +
Sbjct: 96 PNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANY----YPHM 149
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355
++ G+++RV + +I+ P ++ DE + LD + +++ ++ ++ E + Q
Sbjct: 150 LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQH 209
Query: 356 SSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ H D+++++ +G ++ G ++ +A
Sbjct: 210 IGMIKHISDQVLVMHEGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 1e-14
Identities = 77/270 (28%), Positives = 124/270 (45%), Gaps = 41/270 (15%)
Query: 129 DIEAGTRERPKFQTEPTLPIY---LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEV 185
D+E +R + P LP ++F +T++ + + ++ G+
Sbjct: 311 DLEDSVFQREEPADAPELPNVKGAVEFRHITFEF-------ANSSQGVFDVSFEAKAGQT 363
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVG---------GSITYNDHPYSKSLKSKIGFVTQ 236
+A++GP+G+GKTTL+NLL R+ +PTVG ++T +SL+ I V Q
Sbjct: 364 VAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVT------RESLRKSIATVFQ 416
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--DTMIGGSFVR 294
D LF +++E + + + K A D I L+R DT++G R
Sbjct: 417 DAGLFNR-SIRENIRLGREGATDEEVYEAAKAAAAHDFI----LKRSNGYDTLVGE---R 468
Query: 295 G--VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
G +SGGER+R+ I I+ N +L LDE TS LD T R V+ D +T
Sbjct: 469 GNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEAR-VKNAIDALRKNRTTFIIA 527
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
H+ S+ D ++ L +G L+ G E
Sbjct: 528 HRLST--VRNADLVLFLDQGRLIEKGSFQE 555
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 2e-14
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 49/224 (21%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
E L I V GE++A++GP GSGK++LL+ L G L + GS++
Sbjct: 14 EQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL--EKLSGSVSVP------ 65
Query: 226 SLKSKIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLE 281
I +V+Q P + T++E N L K E+R VI LE
Sbjct: 66 ---GSIAYVSQ----EPWIQNGTIRE-----------NILFGKPFDEERYEKVIKACALE 107
Query: 282 RCQD---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
D T IG +G+ SGG+++R+ + + + + LD+P S +D+
Sbjct: 108 P--DLEILPDGDLTEIG---EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162
Query: 331 ALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373
I + + + KT + HQ L D++++L G
Sbjct: 163 GRHIFENCILGLLLNNKTRILVTHQLQ--LLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 60/187 (32%), Positives = 94/187 (50%), Gaps = 35/187 (18%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL- 227
E +IL G+ S+N GE+ A+MGP+GSGK+TL +++G + G I + +S+
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKG----ESIL 74
Query: 228 ------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLP-NTLTKQQ--KEKRAI---D 273
++ +G F+ Q + P ++ A LRL N+ K Q E + +
Sbjct: 75 DLEPEERAHLGIFLAFQYPIEIP------GVSNADFLRLAYNSKRKFQGLPELDPLEFLE 128
Query: 274 VINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDS 328
+INE L L + + + G SGGE+KR NEI +++ L LDE SGLD
Sbjct: 129 IINEKLKLVGMDPSFLSRNVNEGFSGGEKKR----NEILQMALLDSELAILDETDSGLD- 183
Query: 329 TTALRIV 335
AL+I+
Sbjct: 184 IDALKII 190
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 2e-14
Identities = 64/279 (22%), Positives = 121/279 (43%), Gaps = 47/279 (16%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SL 227
L + +V PGE+ AL+G +G+GK+TL+ +LSG + EPT G+IT N+ Y+K +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPT-KGTITINNINYNKLDHKLAA 78
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-------NTLTKQQKEKRAIDVINELGL 280
+ IG + Q+ + LTV E L R N + ++ RA ++ +GL
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ D V +S ++ + I ++++ ++ +DEPTS L + + ++
Sbjct: 136 KVDLDE-----KVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
+ + G +V H+ + + D+ ++ GS + G S
Sbjct: 191 LRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVS------------------- 230
Query: 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKP 439
D++N ++ + V ELQ+R +
Sbjct: 231 -----DVSNDDIVRLMVGRELQNRFNAMKENVSNLAHET 264
|
Length = 510 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 2e-14
Identities = 58/198 (29%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPY 223
E L I + +V AL+GPSG GK+TLL L+ R+ + G IT + Y
Sbjct: 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLN-RMNDLIEGVKITGKLTMDGEDIY 73
Query: 224 S----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ K+G V Q FP +++ E + Y LR + K+K+ +D + E
Sbjct: 74 GNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYG--LR-----AQGIKDKKVLDEVVERS 125
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + +D + +F G+SGG+++R+CI I + P ++ +DEPTS LD +
Sbjct: 126 LRGAALWDEVKDRLKSHAF--GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHK 183
Query: 334 IVQMLQDIAEAGKTVVTT 351
I ++++++ + V+ T
Sbjct: 184 IEELMEELKKNYTIVIVT 201
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-14
Identities = 57/208 (27%), Positives = 102/208 (49%), Gaps = 30/208 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFV 234
++ G+ +AL+GPSG+GKT+LLN L G L GS+ N +S + + +V
Sbjct: 372 TLPAGQRIALVGPSGAGKTSLLNALLGFL---PYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTM 287
Q+ L H T+++ + LL P+ + +Q + + + L GL DT
Sbjct: 429 GQNPQLP-HGTLRDNV----LLGNPD-ASDEQLQQALENAWVSEFLPLLPQGL----DTP 478
Query: 288 IG-GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
IG + G+S G+ +R+ + ++ LL LDEPT+ LD+ + ++Q L A +
Sbjct: 479 IGDQA--AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA-ASRRQ 535
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSL 374
T + HQ ++D++ ++ G +
Sbjct: 536 TTLMVTHQLED--LAQWDQIWVMQDGQI 561
|
Length = 588 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (178), Expect = 3e-14
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 19/221 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY-NDHPYSK--- 225
L+GI+ E+ AL+GPSG GK+T L N ++ + + G I + + Y
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ ++G V Q FP +V + + Y L++ K+ ++R + + + + +
Sbjct: 80 LVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+D + + + SGG+++R+CI + + P ++ LDEPTS LD ++ I + L ++
Sbjct: 137 TKDNLDRNA--QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194
Query: 343 EAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++ T + Q + R+ D+ L G L+ G E
Sbjct: 195 HQYTFIMVTHNLQQAGRI---SDQTAFLMNGDLIEAGPTEE 232
|
Length = 251 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 3e-14
Identities = 61/213 (28%), Positives = 105/213 (49%), Gaps = 21/213 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF +V Y I T E+K + N I+ + G +AL+G +GSGK+TL+ + L++
Sbjct: 3 IKFENVDY--IYSPGTPMEKKGLDN-ISFELEEGSFVALVGHTGSGKSTLMQHFNA-LLK 58
Query: 210 PT------VGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262
P+ G IT + K L+ K+ V Q FP + E + P
Sbjct: 59 PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQ----FPEAQLFENTVLKDVEFGPKNF 114
Query: 263 --TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320
++ + +++A+ + ++GL +D + F +SGG+ +RV I + P +L LD
Sbjct: 115 GFSEDEAKEKALKWLKKVGLS--EDLISKSPF--ELSGGQMRRVAIAGVMAYEPEILCLD 170
Query: 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
EP +GLD ++Q+ +D +AG TV+ H
Sbjct: 171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTH 203
|
Length = 287 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 64/198 (32%), Positives = 112/198 (56%), Gaps = 21/198 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225
+ L + ++ PG++L + GP+GSGK+TLL+L+ R + + G I ++D P +K
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQ-RHFDVS-EGDIRFHDIPLTKLQL 384
Query: 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-IDVINE--LGLE 281
S +S++ V+Q LF TV + AL R P+ T+Q+ E A + +++ L L
Sbjct: 385 DSWRSRLAVVSQTPFLFSD-TVANNI---ALGR-PDA-TQQEIEHVARLASVHDDILRLP 438
Query: 282 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ DT +G RGV SGG+++R+ I +++N +L LD+ S +D T +I+ L+
Sbjct: 439 QGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495
Query: 340 DIAEAGKTVVTTIHQPSS 357
E G+TV+ + H+ S+
Sbjct: 496 QWGE-GRTVIISAHRLSA 512
|
Length = 569 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 4e-14
Identities = 49/177 (27%), Positives = 90/177 (50%), Gaps = 22/177 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK- 230
+L GI +++ GEV AL+G +G+GK+TL+ +++G + P G++ +P ++ +K
Sbjct: 26 VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG--IVPPDSGTLEIGGNPCARLTPAKA 83
Query: 231 ----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I V Q+ +LFP+L+VKE + L LP Q ++ ++ LG + D+
Sbjct: 84 HQLGIYLVPQEPLLFPNLSVKENI----LFGLPKR---QASMQKMKQLLAALGCQLDLDS 136
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL---DSTTALRIVQMLQD 340
G V +R+ V I ++ + +L LDEPT+ L ++ ++ L
Sbjct: 137 SAGSLEV-----ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA 188
|
Length = 510 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-14
Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 24/160 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ +L+ ++ + PG++L L+GP+G+GK+TL+ ++ G L+ P G I N K
Sbjct: 16 QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-LVAPD-EGVIKRNG-------K 66
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTM 287
+IG+V Q +L LT LRL P T K+ D++ L+R Q
Sbjct: 67 LRIGYVPQK----LYLDTTLPLTVNRFLRLRPGT-------KKE-DILP--ALKRVQAGH 112
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ + ++ +SGGE +RV + ++ P LL LDEPT G+D
Sbjct: 113 LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 7e-14
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS- 224
+ + ILN I+ S+ GE + GPSG GK+TLL +++ L+ PT G++ + S
Sbjct: 16 LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVAS-LISPTS-GTLLFEGEDIST 73
Query: 225 ---KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ + ++ + Q LF TV + L + +R +Q +D + L
Sbjct: 74 LKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR-----NQQPDPAIFLDDLERFALP 127
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
DT++ + + +SGGE++R+ + + P +L LDE TS LD
Sbjct: 128 ---DTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-14
Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 14/90 (15%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ +++++ + L+ ++ ++ GE++AL+GP+GSGK+TLL ++G L++P
Sbjct: 1 EIENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAG-LLKP 51
Query: 211 TVGGSITYNDHPYSKS----LKSKIGFVTQ 236
T G I + +K L+ +IG+V Q
Sbjct: 52 T-SGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 9e-14
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 23/211 (10%)
Query: 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
+ ++V + +TS + K + + I+ SV GE+L G GSG+T L+N L G ++
Sbjct: 262 HETVFEV--RNVTSRDRKKVRD-ISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRA 316
Query: 213 GGSITYN------DHPYSKSLKSKIGFVTQ---DDVLFPHLTVKETLTYAALLRLPN--- 260
GG I N P ++K + ++T+ D+ FP+ ++ + + + L+
Sbjct: 317 GGEIRLNGKDISPRSPLD-AVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375
Query: 261 --TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318
L + E+R + EL +C + +SGG +++V I + P ++
Sbjct: 376 AMGLFHEVDEQRTAENQRELLALKCHSV---NQNITELSGGNQQKVLISKWLCCCPEVII 432
Query: 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
DEPT G+D I ++++ +A+ GK ++
Sbjct: 433 FDEPTRGIDVGAKAEIYKVMRQLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (174), Expect = 9e-14
Identities = 58/224 (25%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K L I + ++ AL+G SG GK+T L N ++ ++ + + G +
Sbjct: 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAK--IDGLVEIEGKDVKN 71
Query: 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINELG 279
+L+ +G V Q +F ++ E ++YA L + + K + E+ A+ D + ++G
Sbjct: 72 QDVVALRKNVGMVFQQPNVFVK-SIYENISYAPKL---HGMIKNKDEEEALVVDCLQKVG 127
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L E +D + + +SGG+++R+CI + I P LL LDEPTS LD ++ I ++L
Sbjct: 128 LFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++++ ++ T + + + LG+ L+ FG++ E
Sbjct: 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE--LIEFGESKE 227
|
Length = 246 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 1e-13
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 21/191 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS 226
+ ++ V GE++ + G +G+G++ L+ +SG + G I N +
Sbjct: 274 VKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG--LRKPASGRILLNGKDVLGRLSPRER 331
Query: 227 LKSKIGFVTQD---DVLFPHLTVKE-----TLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ + +V +D L L++ E R + + K A ++I E
Sbjct: 332 RRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR-KFARELIEEF 390
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+ R + R +SGG ++++ + E+ P LL +PT GLD I + L
Sbjct: 391 DV-RAPSP---DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERL 446
Query: 339 QDIAEAGKTVV 349
++ +AGK V+
Sbjct: 447 LELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-13
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 25/168 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSK 225
L+G++ ++ G+ LA++G SG GK+TL LL+ ++E GG + Y D K
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLT--MIETPTGGELYYQGQDLLKADPEAQK 88
Query: 226 SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--E 281
L+ KI V Q+ L P V + L L + +L+ ++ ++A+ ++ ++GL E
Sbjct: 89 LLRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALAMMAKVGLRPE 146
Query: 282 RCQ--DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
M SGG+R+R+ I ++++P ++ DEP S LD
Sbjct: 147 HYDRYPHMF--------SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 1e-13
Identities = 53/214 (24%), Positives = 99/214 (46%), Gaps = 15/214 (7%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITY 218
++ IL + + V AL+GPSG GK+T + +L+ G E + G Y
Sbjct: 14 DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIY 73
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ L+ K+G V Q FP ++ + + Y LR+ + E+R + +
Sbjct: 74 DPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDEDFIEERVEESLKAA 130
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + + G+SGG+++R+CI I ++P ++ +DEP S LD + +I +
Sbjct: 131 ALWDEVKDKLDKSAL--GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDL 188
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371
+ + E V+ T + + K+ L G+
Sbjct: 189 IHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGE 222
|
Length = 250 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 36/227 (15%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHP-YSK-----SLK 228
++ P V A +GPSG GK+T+L L+ R+ E G G + + Y +++
Sbjct: 26 NIEPRSVTAFIGPSGCGKSTVLRTLN-RMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVR 84
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ER 282
IG V Q FP +++++ + A L+L + K+ +D + E L
Sbjct: 85 RTIGMVFQRPNPFPTMSIRDNV--VAGLKLNG-----VRNKKDLDELVEKSLRGANLWNE 137
Query: 283 CQDTM--IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+D + GG G+SGG+++R+CI I + P +L +DEP S LD + L I ++ +
Sbjct: 138 VKDRLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 341 IAEAGKTVVTTIH--QPSSRLFHK--FDKLILLGK-GSLLYFGKASE 382
+ + T+V H Q ++R+ + F L GK G L+ +
Sbjct: 194 LKQD-YTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEK 239
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-13
Identities = 54/194 (27%), Positives = 79/194 (40%), Gaps = 52/194 (26%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
+ PG+ L + GPSG+GK++L L+G + P G I L F+ Q
Sbjct: 24 IKPGDRLLITGPSGTGKSSLFRALAG--LWPWGSGRIGM--PEGEDLL-----FLPQRP- 73
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
P T++E L Y L SGG
Sbjct: 74 YLPLGTLREQLIYPWDDVL--------------------------------------SGG 95
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359
E++R+ ++ P +FLDE TS LD + R+ Q+L+ E G TV++ H+PS
Sbjct: 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRPSLWK 152
Query: 360 FHKFDKLILLGKGS 373
FH L L G+G
Sbjct: 153 FHDR-VLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 1e-13
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 28/198 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP------YSKS- 226
++ + PGEVL ++G SGSGK+TLL L+GRL G+ TY Y S
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDH--GTATYIMRSGAELELYQLSE 77
Query: 227 ------LKSKIGFVTQDDVLFPHLTVKETLTYAALL--RLPNTLTKQQKEKR--AIDVIN 276
++++ GFV Q+ P ++ ++ A + RL + R A D +
Sbjct: 78 AERRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLE 133
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
E+ ++ + + +F SGG ++R+ I ++ P L+F+DEPT GLD + R++
Sbjct: 134 EVEIDPTRIDDLPRAF----SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 337 MLQD-IAEAGKTVVTTIH 353
+L+ + + G V+ H
Sbjct: 190 LLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 53/192 (27%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITYNDHP 222
L I + +V A +GPSG GK+TLL L + E + G +I
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 223 YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-E 281
+ L++K+G V Q FP +++ + + + +RL L++ + ++R + + L
Sbjct: 89 IAL-LRAKVGMVFQKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWN 144
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
+D + +SGG+++R+CI I I P +L LDEP S LD + RI +++ ++
Sbjct: 145 EVKDKL--HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL 202
Query: 342 AEAGKTVVTTIH 353
+ TVV H
Sbjct: 203 KQD-YTVVIVTH 213
|
Length = 260 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-13
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 21/183 (11%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---- 221
S E+K IL G+ V PGEV A+MGP+GSGK+TL L+GR GG++ +
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 222 --PYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------ 273
P ++ + I Q V P ++ + L A + + + +D
Sbjct: 70 LSPEDRAGEG-IFMAFQYPVEIPGVSNQFFLQTAL------NAVRSYRGQEPLDRFDFQD 122
Query: 274 -VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ ++ L + + ++ S G SGGE+KR I ++ P L LDE SGLD AL
Sbjct: 123 LMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDAL 181
Query: 333 RIV 335
+IV
Sbjct: 182 KIV 184
|
Length = 248 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 32/223 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 223
L+ ++ + +V A++GPSG GK+T L N ++ + V G +T Y+
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+L+ +IG V Q FP ++ + + Y L++ Q ID E L R
Sbjct: 115 PVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKI-------QGYDGDIDERVEESLRRA 164
Query: 284 ------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D + +SGG+++R+CI I +P ++ +DEP S LD +I +
Sbjct: 165 ALWDEVKDQLDSSGL--DLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDL 222
Query: 338 LQDIAEAGKTVVTTIH--QPSSRLFHKFDKLILLGKGSLLYFG 378
++++AE TVV H Q ++R+ K + L G L+ F
Sbjct: 223 IEELAEE-YTVVIVTHNMQQAARISDK--TAVFLTGGELVEFD 262
|
Length = 285 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 17/197 (8%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLL-------SGRLMEPTVGGSITYNDHPYS 224
+L ++ SVN GE + L GPSGSGK+TLL L G+++ G +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 225 KSL---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281
+ L ++ IG+V+Q + P ++ L A L + ++ +A D++ L L
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVS---ALDVVAEPLLARGVPREVARAKAADLLTRLNLP 142
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
++ +F SGGE++RV I I++ +L LDEPT+ LD+T +V+++++
Sbjct: 143 ERLWSLAPATF----SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA 198
Query: 342 AEAGKTVVTTIHQPSSR 358
G +V H R
Sbjct: 199 KARGAALVGIFHDEEVR 215
|
Length = 235 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 27/179 (15%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
GS++ EV+ ++GP+G GKTT + +L+G L +P G D + + Q
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD---------TVSYKPQ- 68
Query: 238 DVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295
++ T LL + T + ++ L +E+ D V
Sbjct: 69 -----YIKADYEGTVRDLLSSITKDFYTHPYFK---TEIAKPLQIEQILD-----REVPE 115
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIH 353
+SGGE +RV I + + + LDEP++ LD L ++++ AE KT H
Sbjct: 116 LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-13
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 18/196 (9%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDHPYSK- 225
++L+G+ + + ALMGPSGSGK+TLL + + RL+E V G + + K
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFN-RLIELYPEARVSGEVYLDGQDIFKM 75
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE--KRAIDVINELGL 280
L+ ++ V Q P+L++ E + L N L K +KE +R + + L
Sbjct: 76 DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKL---NRLVKSKKELQERVRWALEKAQL 132
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ +D + + +SGG+++R+CI + P +L DEPT+ LD +I +
Sbjct: 133 WDEVKDRL--DAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFL 190
Query: 340 DIAEAGKTVVTTIHQP 355
++ + T+V H P
Sbjct: 191 ELKKD-MTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 64/225 (28%), Positives = 114/225 (50%), Gaps = 22/225 (9%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E+ L + S+ G +A++G +GSGK+TLL L+G L++PT G++T + +
Sbjct: 19 ERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNG-LLQPT-SGTVTIGERVITAGKK 76
Query: 225 ----KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINEL 278
K L+ K+G V Q FP H +ET+ N ++++ +++A ++I +
Sbjct: 77 NKKLKPLRKKVGIVFQ----FPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV 132
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL ++ + F +SGG+ +RV I + + P +L LDEPT+GLD +++M
Sbjct: 133 GLP--EELLARSPF--ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMF 188
Query: 339 QDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ E G T V H D+++++ KG++ G E
Sbjct: 189 YKLHKEKGLTTVLVTHSMED-AARYADQIVVMHKGTVFLQGTPRE 232
|
Length = 290 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 33/204 (16%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSIT------YNDHPY 223
L G++ + V AL+GPSG GK+T L N ++ R+ + GS+ Y D
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAA----------LLRLPNTLTKQQKEKRAID 273
L+ ++G V Q FP +++E ++Y L RL L + K+ D
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL---LGRDDKDAE--D 174
Query: 274 VINELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ E L + D + G+SGG+++R+CI + ++P ++ +DEP S LD
Sbjct: 175 ELVERSLRQAALWDEVNDRL--DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232
Query: 328 STTALRIVQMLQDIAEAGKTVVTT 351
+I +++++AE VV T
Sbjct: 233 PIATSKIEDLIEELAEEYTVVVVT 256
|
Length = 305 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-13
Identities = 65/262 (24%), Positives = 115/262 (43%), Gaps = 33/262 (12%)
Query: 136 ERPKFQTEPTLPIY-LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGS 194
K +TE + DV+Y G S +IL+ I+ ++ ++G SGS
Sbjct: 459 INKKKRTELNNLNGDIVINDVSYSY---GYGS----NILSDISLTIKMNSKTTIVGMSGS 511
Query: 195 GKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250
GK+TL LL G + G I N +L+ I ++ Q+ +F ++ E L
Sbjct: 512 GKSTLAKLLVG-FFQAR-SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENL 568
Query: 251 TYAALLRLPNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRV 304
A Q + A ++ I + L + GS +SGG+++R+
Sbjct: 569 LLGA-----KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGS---SISGGQKQRI 620
Query: 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364
+ ++ + +L LDE TS LD+ T +IV L ++ + KT++ H+ S + + D
Sbjct: 621 ALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQD--KTIIFVAHRLS--VAKQSD 676
Query: 365 KLILLGKGSLLYFGKASEAMAY 386
K+I+L G ++ G E +
Sbjct: 677 KIIVLDHGKIIEQGSHDELLDR 698
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 3e-13
Identities = 55/191 (28%), Positives = 95/191 (49%), Gaps = 24/191 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPYSKSL 227
LN ++ SV+PGE+ L+GP+G+GKTTL+++++G+ P G G P +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-TRPQEGEVLFDGDTDLTKLPEHRIA 79
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYA--------ALLRLPNTLTKQQKEKRAIDVINEL- 278
++ IG Q +F +LTV+E L A A L + +E+R ID +
Sbjct: 80 RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLF----ARLRAEERRRIDELLATI 135
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GL +D + +S G+++ + IG + +P LL LDEP +G+ + ++L
Sbjct: 136 GLGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELL 190
Query: 339 QDIAEAGKTVV 349
+ +A +V
Sbjct: 191 KSLAGKHSILV 201
|
Length = 249 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 5e-13
Identities = 70/265 (26%), Positives = 125/265 (47%), Gaps = 34/265 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI------TYNDHPYSKS 226
LN ++ V G++ ++G SG+GK+TL+ ++ L PT G I T +
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN-LLERPTSGSVIVDGQDLTTLSNSELTK 79
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ +IG + Q L TV + A L L NT K + +++ +++ +GL D
Sbjct: 80 ARRQIGMIFQHFNLLSSRTVFGNV--ALPLELDNT-PKDEIKRKVTELLALVGLGDKHD- 135
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAG 345
S+ +SGG+++RV I + NP +L DE TS LD T I+++L++I G
Sbjct: 136 ----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG 191
Query: 346 KTVVTTIHQPS--SRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEF 403
T++ H+ R+ + ++ G L+ G SE ++ P+ + +F
Sbjct: 192 LTILLITHEMDVVKRICD---CVAVISNGELIEQGTVSEIFSH-------PKTPL-AQKF 240
Query: 404 LLDLANGNLHDVSVPSELQDRVQTE 428
+ LH +S+P + Q+R+Q
Sbjct: 241 I----RSTLH-LSIPEDYQERLQAT 260
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-13
Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L ++G V GE+L L+GP+G+GK+TLL ++G + GSI + P +++
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSATELA 71
Query: 232 ---GFVTQDDVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINEL-GLERCQD 285
+++Q +P + LT Q +K +++N++ G D
Sbjct: 72 RHRAYLSQQQ--------------TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDD 117
Query: 286 TMIGGSFVRGVSGGERKRV-----CIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQML 338
+ G +SGGE +RV + NP+ LL LDEP + LD + ++L
Sbjct: 118 KL--GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLL 175
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+ + G +V + H + L H + LL +G LL G+ E +
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 8e-13
Identities = 49/171 (28%), Positives = 81/171 (47%), Gaps = 24/171 (14%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSK 230
N + V E+++L+GP+G+GKTT+ N L+G +PT GG+I ++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTG-FYKPT-GGTILLRGQHIEGLPGHQIAR 79
Query: 231 IGFVT--QDDVLFPHLTVKETLTYA-------ALLR-LPNTLTKQQKEKRAIDV----IN 276
+G V Q LF +TV E L A L L T ++ E A+D +
Sbjct: 80 MGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+GL + G ++ G+++R+ I ++ P +L LDEP +GL+
Sbjct: 140 RVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 8e-13
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 172 ILNGITGSVN----------PGEVLALMGPSGSGK-TTLLNLLSGRLMEPTVGGSITYND 220
+LN +T V+ PGE L+L+G SGSGK TT LL RL+E + GG I +N
Sbjct: 329 LLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL--RLVE-SQGGEIIFNG 385
Query: 221 H-----PYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRA 271
K +L+ I F+ QD + L ++T+ + + LR+ L + R
Sbjct: 386 QRIDTLSPGKLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARV 443
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
++ +GL F SGG+R+R+CI + +NP ++ DE S LD +
Sbjct: 444 AWLLERVGLLPEHAWRYPHEF----SGGQRQRICIARALALNPKVIIADEAVSALDVSIR 499
Query: 332 LRIVQMLQDI 341
+I+ +L D+
Sbjct: 500 GQIINLLLDL 509
|
Length = 623 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 8e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 28/216 (12%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----SKSLKSKIGFVTQD 237
G+V L+G +GSGK+TLL +L GR P+ G I + P SK+ K+ ++ Q
Sbjct: 36 AGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAFARKVAYLPQQ 93
Query: 238 DVLFPHLTVKETLT------YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291
+TV+E + + AL R ++K + AI ++ GL +
Sbjct: 94 LPAAEGMTVRELVAIGRYPWHGALGRF--GAADREKVEEAISLV---GL-----KPLAHR 143
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVT 350
V +SGGER+R I + + L LDEPTS LD + ++ ++ ++ E G TV+
Sbjct: 144 LVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIA 203
Query: 351 TIH--QPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
+H ++R D L+ L G ++ G +E M
Sbjct: 204 VLHDINMAARY---CDYLVALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 28/229 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITYNDHP-YS 224
EK L ++ + V AL+GPSG GK+T LN ++ + + G ++ Y
Sbjct: 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYE 83
Query: 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
L+ +G V Q FP +++ + + Y + N K+ +D + E
Sbjct: 84 PDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGAN--------KKDLDGVVENA 134
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L + D + S +SGG+++R+CI + + P ++ DEPTS LD + R
Sbjct: 135 LRSAALWDETSDRL--KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++ ++ + V+ T + + + L+G+ L+ FG+ +
Sbjct: 193 IEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGE--LIEFGQTRQ 239
|
Length = 258 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 1e-12
Identities = 52/194 (26%), Positives = 98/194 (50%), Gaps = 25/194 (12%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV--GGSITYNDHPY 223
LN I + + AL+GPSG GK+T L +L+ G +E V G Y+++
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER- 282
L+ KIG V Q F +++ + ++Y + K+K+ +D I E L++
Sbjct: 83 ILELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH-------GTKDKKKLDEIVEQSLKKS 134
Query: 283 -----CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D + + +SGG+++R+CI + I P+++ +DEPTS LD + +I ++
Sbjct: 135 ALWNEVKDKLNTNAL--SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 338 LQDIAEAGKTVVTT 351
+ ++ E+ ++ T
Sbjct: 193 IINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 21/220 (9%)
Query: 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219
IL E L ++ V GE + L+G +G+GK+TLL LL+G + P G++T
Sbjct: 25 ILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG-IYPPD-SGTVTVR 82
Query: 220 DHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ S +G + P LT +E + L L++++ +++ ++I
Sbjct: 83 -----GRVSSLLGLGGGFN---PELTGRENIYLNGRL---LGLSRKEIDEKIDEIIEFSE 131
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
L D V+ S G + R+ + P +L +DE + D+ + + L+
Sbjct: 132 LGDFIDLP-----VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 378
++ + GKTV+ H PSS + D+ ++L KG + + G
Sbjct: 187 ELLKQGKTVILVSHDPSS--IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-12
Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 27/181 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSK 225
+K+ + GI ++ AL+GPSGSGK+T L N ++ + V G I Y ++
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 226 S------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
++ IG V Q F ++ E +T+A K+K+ +D I E
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAK-SIYENITFALERA-------GVKDKKVLDEIVETS 143
Query: 280 L------ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD--STTA 331
L ++ +D + + +SGG+++R+CI I + P +L +DEP S LD ST
Sbjct: 144 LKQAALWDQVKDDLHKSALT--LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQ 201
Query: 332 L 332
L
Sbjct: 202 L 202
|
Length = 267 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 60/242 (24%), Positives = 115/242 (47%), Gaps = 30/242 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+ F +V+++ S+ L ++ ++ G+ +++G +GSGK+T+ L+ G +E
Sbjct: 8 IVFKNVSFQY------QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG--IE 59
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTK 264
G I YN+ + + L+ IG V Q+ D F VK Y L N
Sbjct: 60 KVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVK----YDVAFGLENHAVP 115
Query: 265 QQKEKRAI-DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ R + + + ++ + D +SGG+++RV I + +NPS++ LDE T
Sbjct: 116 YDEMHRRVSEALKQVDMLERAD-----YEPNALSGGQKQRVAIAGVLALNPSVIILDEAT 170
Query: 324 SGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380
S LD L +V+ ++ +E T+++ H S + + D +I++ KG++ G
Sbjct: 171 SMLDPDARQNLLDLVRKVK--SEHNITIISITHDLSEAM--EADHVIVMNKGTVYKEGTP 226
Query: 381 SE 382
+E
Sbjct: 227 TE 228
|
Length = 269 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG--RLMEPTVGGSITYNDHPYSKSLKSK 230
L + +V G + AL+G +GSGK+TL L G RL G I+ P ++L+
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLAS----GKISILGQPTRQALQKN 78
Query: 231 -IGFVTQD---DVLFPHLTVKETLT----YAALLRLPNTLTKQQKEKRAIDVINELGLER 282
+ +V Q D FP L + + LR K++ + + + +
Sbjct: 79 LVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRA----KKRDRQIVTAALARVDMVE 134
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+ IG +SGG++KRV + I ++ LDEP +G+D T RI+ +L+++
Sbjct: 135 FRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR 189
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ GKT++ + H S +F ++ KG++L G
Sbjct: 190 DEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVLASG 223
|
Length = 272 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (163), Expect = 2e-12
Identities = 44/177 (24%), Positives = 92/177 (51%), Gaps = 14/177 (7%)
Query: 185 VLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK-----SLKSKIGFVT 235
V A++GPSG GK+T+L N + + V G I +D Y + S++ ++G V
Sbjct: 32 VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVF 91
Query: 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVR 294
Q FP +++ + + A +L + + + ++ + + L + +D + +
Sbjct: 92 QKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351
+SGG+++R+CI I + P ++ +DEP S LD + L+I ++++++ E ++ T
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204
|
Length = 252 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 3e-12
Identities = 68/256 (26%), Positives = 121/256 (47%), Gaps = 26/256 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
L I + GE + ++G +GSGK+TL L+G L+ P G I D + ++
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNG-LLRPQKGKVLVSGIDTGDFSKLQGIR 76
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+G V Q+ + F TV+E L + L LP + KR + E+GLE+ +
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPI----EIRKRVDRALAEIGLEKYRHR 132
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ +SGG+ + V + + + P L DE TS LD + + +++ ++ + E GK
Sbjct: 133 S-----PKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 347 TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS--SIGCSPQIAMNPAEFL 404
T+V H H D++I++ +G ++ G+ ++ S ++G +P + AE L
Sbjct: 188 TIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPPSLIELAENL 245
Query: 405 LDLANGNLHDVSVPSE 420
+H V +P E
Sbjct: 246 ------KMHGVVIPWE 255
|
Length = 274 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 34/234 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYND-HPY 223
K IL I + EV A +GPSG GK+T L N ++ + V G + + Y
Sbjct: 16 GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVY 75
Query: 224 SKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE- 277
S L++K+G V Q FP ++ + + Y L K K+ +D I E
Sbjct: 76 SVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGP------KLHGLAKNKKKLDEIVEK 128
Query: 278 ----LGL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+GL +R +D+ +SGG+++R+CI I + P++L +DEP S LD
Sbjct: 129 SLTSVGLWEELGDRLKDSAFE------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182
Query: 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
I ++Q++ + +V T ++ D++ G ++ + E
Sbjct: 183 VATNVIENLIQELKKNFTIIVVTHSMKQAKKVS--DRVAFFQSGRIVEYNTTQE 234
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-12
Identities = 53/194 (27%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+EK LN ++ V GE L+++G +GSGK+T + L+ G L+E G I D +
Sbjct: 16 EDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDG-LLEAESGQIIIDGDLLTEE 74
Query: 226 S---LKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGL 280
+ ++ KIG V Q+ D F TV++ + + L N + ++ ++R + + +G+
Sbjct: 75 NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGM 130
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+++RV I + + P ++ LDE TS LD L +++ ++
Sbjct: 131 QDFKEREPAR-----LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKG 185
Query: 341 IAEA-GKTVVTTIH 353
I + TV++ H
Sbjct: 186 IRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (163), Expect = 3e-12
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 13/191 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+ + +T + G A++GP+G GK+TLL LS RLM P G +H SK
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASK 77
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 283
+ +IG + Q+ +TV+E + R P+ T+ +KE + + + ++
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG---RYPHQPLFTRWRKEDE--EAVTK-AMQAT 131
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-A 342
T + V +SGG+R+R I + +++ LDEPT+ LD + + ++++L ++
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 343 EAGKTVVTTIH 353
E G T+ +H
Sbjct: 192 EKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 3e-12
Identities = 56/225 (24%), Positives = 111/225 (49%), Gaps = 25/225 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYS 224
+L I ++ A++GPSG GK+TLL +++SG +E G + N++ YS
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLE---GAVLLDNENIYS 75
Query: 225 KSL-----KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+L + ++G V Q FP ++ + + + R+ T + + ++ + +
Sbjct: 76 PNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGP--RMLGTTAQSRLDEVVEKSLRQAA 132
Query: 280 L-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
L + +D + +SGG+++R+CI + I P ++ +DEP S LD + +RI +++
Sbjct: 133 LWDEVKDNLHKSGL--ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELM 190
Query: 339 QDIAEAGK-TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
Q++ + +VT Q ++R D L G L+ +G+ E
Sbjct: 191 QELKQNYTIAIVTHNMQQAAR---ASDWTGFLLTGDLVEYGRTGE 232
|
Length = 251 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 27/234 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSK 225
IL ++ + PG V AL+G +G+GK+TLL L+G L V G +T N P +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 226 SLKSKIG-----FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
++ F + +E + L R P+ R ++ + L
Sbjct: 76 IDAPRLARLRAVLPQAAQPAFA-FSAREIVL---LGRYPHARRAGALTHRDGEIAWQ-AL 130
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIG---------NEIIINPSLLFLDEPTSGLDSTTA 331
T + G V +SGGE RV ++ P L LDEPT+ LD
Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQ 190
Query: 332 LRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
R++ ++ +A + V+ +H P+ H D++ +L G+++ G ++ +
Sbjct: 191 HRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 52/191 (27%), Positives = 98/191 (51%), Gaps = 18/191 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
LN ++ V+PGE+ ++GP+G+GKTT++++++G+ P GS+ + + + +I
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-TRPDE-GSVLFGGTDLTGLPEHQIA 75
Query: 232 ----GFVTQDDVLFPHLTVKETL--TYAALLRLPNTLTKQ--QKEKRAID-VINELGLER 282
G Q +F +LTV E L + +L + +EK I+ V+ +GL
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
D + G +S G+++ + IG ++ +P LL LDEP +G+ + ++L+ +A
Sbjct: 136 EADRLAG-----LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA 190
Query: 343 EAGKTVVTTIH 353
+VV H
Sbjct: 191 G-KHSVVVVEH 200
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 6e-12
Identities = 57/225 (25%), Positives = 106/225 (47%), Gaps = 18/225 (8%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP--YSK 225
+++ +L G+ + V L+G +G GK+TL LSG L+ P G++ + P YSK
Sbjct: 12 QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSG-LLRPQ-KGAVLWQGKPLDYSK 69
Query: 226 ----SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
+L+ ++ V QD + + + + ++ L N + + R +D L L
Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS----LRNLGVPEAEITRRVD--EALTL 123
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
Q ++ +S G++KRV I +++ L LDEPT+GLD +++ +++
Sbjct: 124 VDAQH--FRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I G V+ + H ++ D + +L +G +L G E A
Sbjct: 182 IVAQGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEVFA 225
|
Length = 271 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 63/223 (28%), Positives = 113/223 (50%), Gaps = 32/223 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 228
L ++ SV GE +A++G +GSGK+TL LL+G L+ P G+IT S+ ++
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNG-LLLPE-AGTITVGGMVLSEETVWDVR 80
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDT 286
++G V Q+ D F TV++ + + L N + +++ +R + ++G+E
Sbjct: 81 RQVGMVFQNPDNQFVGATVQDDVAFG----LENIGVPREEMVERVDQALRQVGME----- 131
Query: 287 MIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQ 339
F+ +SGG+++RV I + + P ++ LDE TS LD L V+ L+
Sbjct: 132 ----DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK 187
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + G TV++ H + D++I++ KG +L G E
Sbjct: 188 E--QKGITVLSITHDLDEAA--QADRVIVMNKGEILEEGTPEE 226
|
Length = 279 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 52/213 (24%), Positives = 112/213 (52%), Gaps = 14/213 (6%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKS-KIGFV 234
++ G+ LA++G +GSGK+TL +L+G ++EPT G + +DHP S +S +I +
Sbjct: 35 TLREGQTLAIIGENGSGKSTLAKMLAG-MIEPT-SGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 235 TQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292
QD L P + + L + LRL L +Q+EK+ I+ + ++GL +
Sbjct: 93 FQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLPDH----ASYY 146
Query: 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
++ G+++R+ + +I+ P ++ DE + LD + +++ ++ ++ E +
Sbjct: 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYV 206
Query: 353 HQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
Q + H D+++++ +G ++ G ++ +A
Sbjct: 207 TQHLGMMKHISDQVLVMHQGEVVERGSTADVLA 239
|
Length = 267 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 53/200 (26%), Positives = 93/200 (46%), Gaps = 28/200 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHP- 222
EK L + + V A +GPSG GK+T L L+ M T V G IT +
Sbjct: 31 EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN--RMNDTIDGCRVTGKITLDGEDI 88
Query: 223 YSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
Y L++++G V Q FP ++ E + Y + + L + + E +D I E
Sbjct: 89 YDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRI---HGLARSKAE---LDEIVE 141
Query: 278 LGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
L + +D + G+SGG+++R+CI I ++P ++ +DEP S LD
Sbjct: 142 TSLRKAGLWEEVKDRL--HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIAT 199
Query: 332 LRIVQMLQDIAEAGKTVVTT 351
++ +++ ++ + V+ T
Sbjct: 200 AKVEELIDELRQNYTIVIVT 219
|
Length = 267 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (160), Expect = 9e-12
Identities = 55/196 (28%), Positives = 95/196 (48%), Gaps = 24/196 (12%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSIT 217
K +L+ ++ V +LMGP+GSGKTT L L SG ++ +GG
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVL---LGGRSI 90
Query: 218 YNDHPYSKSL--KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+N Y L + ++G + Q FP + L A +R + +++ A +
Sbjct: 91 FN---YRDVLEFRRRVGMLFQRPNPFPMSIMDNVL---AGVRAHKLVPRKEFRGVAQARL 144
Query: 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
E+GL + S R +SGG+++ +C+ + +NP +L LDEPTS LD TT +I
Sbjct: 145 TEVGLWDAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203
Query: 336 QMLQDIAEAGKTVVTT 351
+ ++ +A+ ++ T
Sbjct: 204 EFIRSLADRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 1e-11
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 42/209 (20%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHP-YSK--- 225
+ + + ++ A +GPSG GK+T+L N L+ + V G +T++ Y+
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85
Query: 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAI----- 272
++ +IG V Q FP ++ + + Y A + N E ++A
Sbjct: 86 PVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI---NGYKGDMDELVERSLRQAALWDEV 141
Query: 273 -DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
D + + GL +SGG+++R+CI I + P ++ +DEP S LD +
Sbjct: 142 KDKLKQSGL--------------SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPIST 187
Query: 332 LRIVQMLQDIAEAGKTVVTTIH--QPSSR 358
LRI +++ ++ E T++ H Q ++R
Sbjct: 188 LRIEELMHELKEQ-YTIIIVTHNMQQAAR 215
|
Length = 264 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 51/198 (25%), Positives = 98/198 (49%), Gaps = 16/198 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPT-VGGSI------TYNDHPY 223
+ GI+ + +V A++GPSG GK+T + L+ L P V G + Y+
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ER 282
L+ +IG V Q FP +++ E + Y +R+ L + ++ + L +
Sbjct: 83 INRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQE 139
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+D + + G+SGG+++R+CI + I P +L +DEP S LD +++ +++ +
Sbjct: 140 VKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR 197
Query: 342 AEAGKTVVTTIHQPSSRL 359
+E +VT Q ++R+
Sbjct: 198 SELTIAIVTHNMQQATRV 215
|
Length = 259 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 1e-11
Identities = 50/190 (26%), Positives = 89/190 (46%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSLK 228
L + ++ G A +G +GSGK+T++ LL+G L PT G +K +K
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIK 81
Query: 229 S---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LTKQQKEKRAIDVINELGLERC 283
K+G V Q FP + E + P +++++ E A + + +G+
Sbjct: 82 QIRKKVGLVFQ----FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGIS-- 135
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ F +SGG+ +RV I + + P +L LDEPT+GLD ++ + + + +
Sbjct: 136 ESLFEKNPF--ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ 193
Query: 344 AGKTVVTTIH 353
+G T+V H
Sbjct: 194 SGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 51/189 (26%), Positives = 99/189 (52%), Gaps = 21/189 (11%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLM-EPTV----------GGS 215
+ ++N ++ + GE LAL+G SGSGK+ T L++L RL+ P V G S
Sbjct: 20 TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFHGES 77
Query: 216 ITYNDHPYSKSLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI 272
+ + + ++ +KI + Q+ + L P T+++ L +L L + ++ +
Sbjct: 78 LLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--YEVLSLHRGMRREAARGEIL 135
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
+ ++ +G+ + + + +SGGER+RV I ++ P LL DEPT+ LD +
Sbjct: 136 NCLDRVGIRQAAKRL--TDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQA 193
Query: 333 RIVQMLQDI 341
+I+Q+L+++
Sbjct: 194 QILQLLREL 202
|
Length = 529 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 2e-11
Identities = 61/253 (24%), Positives = 111/253 (43%), Gaps = 48/253 (18%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITY------N 219
EK +N I+ + V AL+GPSG GK+T L N ++ + G I Y +
Sbjct: 33 EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92
Query: 220 DHPYSKSLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
+ +L+ +IG V Q FP + + L YA ++ K +D I
Sbjct: 93 SNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG-----------ERRKSVLDEIV 141
Query: 277 ELGLERC------QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
E L + +D + + +SGG+++R+CI + + P++L LDEP S LD +
Sbjct: 142 EESLTKAALWDEVKDRLHSSAL--SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPIS 199
Query: 331 ALRIVQMLQDIAEAGKTVVTTIH-QPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
+I +++ ++ E ++ T + Q + R+ D+ G L+ + +
Sbjct: 200 NAKIEELITELKEEYSIIIVTHNMQQALRV---SDRTAFFLNGDLVEYDQ---------- 246
Query: 390 IGCSPQIAMNPAE 402
+ QI +P +
Sbjct: 247 ---TEQIFTSPKQ 256
|
Length = 268 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 52/179 (29%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+ I+ G+V ALMG +G+GK+TLL +LSG +P GSI + +L
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSG-NYQPD-AGSILIDGQEMRFASTTAAL 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQ 284
+ + + Q+ L P +TV E L L +LP+ + ++ A + + LG++
Sbjct: 78 AAGVAIIYQELHLVPEMTVAENLY---LGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDP 134
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS--TTAL-RIVQMLQD 340
DT ++ +S G+R+ V I + N ++ DEPTS L + L R+++ L+
Sbjct: 135 DTP-----LKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
|
Length = 501 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 175 GITGSVNPGEVLALMGPSGSGKTT----LLNLLSGRLMEPTVGGSITYNDHPYSK-SLKS 229
+ S+ GEVLAL+G SGSGK+ +L LL L + G I + P S++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ--TSGEILLDGRPLLPLSIRG 61
Query: 230 K-IGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ I + Q+ P T+ LR L+KQ + ++ + +GL ++
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIET--LRSLGKLSKQAR-ALILEALEAVGLPDPEEV 118
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ + +SGG +RV I +++ P L DEPT+ LD R++++L+++ +
Sbjct: 119 L--KKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 63/227 (27%), Positives = 113/227 (49%), Gaps = 29/227 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-------TVGGSITYNDH 221
+K LN I+ S+ G AL+G +GSGK+T+ L++G L+ TV G IT
Sbjct: 19 KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDG-ITLT-- 75
Query: 222 PYSKSL---KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI-DVIN 276
+K++ + K+G V Q+ D F TV + + + L N + + + + DV+
Sbjct: 76 --AKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LENRAVPRPEMIKIVRDVLA 129
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
++G+ D S +SGG+++RV I + + P ++ LDE TS LD +I++
Sbjct: 130 DVGMLDYID-----SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILK 184
Query: 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++ + + TV++ H + D++++L G LL G E
Sbjct: 185 LIRKLKKKNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQGSPVE 229
|
Length = 282 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 3e-11
Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 17/179 (9%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGG-SITYNDHPYSKSLKSKIGFV 234
V PGE L+G +G+GKTT +L+G + TV G SI N +++ G+
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM----GYC 2017
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294
Q D + LT +E L A LR + ++ EK A I LGL D + G
Sbjct: 2018 PQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT---- 2070
Query: 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
SGG ++++ +I P L+ LDEPT+G+D + + I G+ VV T H
Sbjct: 2071 -YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 52/188 (27%), Positives = 93/188 (49%), Gaps = 19/188 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LK 228
L G++ S+ G AL+GP+G+GK+TLL L+G + G + + ++
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG--IYLPQRGRVKVMGREVNAENEKWVR 78
Query: 229 SKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQD 285
SK+G V QD D +F TV + + + + N L K + E+R + + + + +D
Sbjct: 79 SKVGLVFQDPDDQVFS-STVWDDVAFGPV----NMGLDKDEVERRVEEALKAVRMWDFRD 133
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+S G++KRV I + ++P ++ LDEP + LD ++++L + G
Sbjct: 134 KP-----PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 346 KTVVTTIH 353
KTV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 53/218 (24%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K+IL I+ S PG + ++G +G+GK+TLL +++G D ++ +
Sbjct: 18 KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFNGEARP 64
Query: 230 ----KIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PNT-----LTKQ 265
K+G++ Q+ L P TV+E + AL R P+ L +Q
Sbjct: 65 APGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQ 124
Query: 266 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPP---WDADVTKLSGGERRRVALCRLLLSKPD 181
Query: 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+L LDEPT+ LD+ + + Q LQ+ TVV H
Sbjct: 182 MLLLDEPTNHLDAESVAWLEQHLQEYP---GTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 54/204 (26%), Positives = 94/204 (46%), Gaps = 18/204 (8%)
Query: 159 VILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
V ++G++ + + I + I+ +V G++ A+MGPSG GKTTLL L+ G++ G I
Sbjct: 8 VDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI--APDHGEIL 65
Query: 218 YNDH---PYSKS----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR 270
++ S+S ++ ++ + Q LF + V + + Y LR L
Sbjct: 66 FDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLHST 123
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ + +GL M +SGG +R + I + P L+ DEP G D T
Sbjct: 124 VMMKLEAVGLRGAAKLMPS-----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
Query: 331 ALRIVQMLQDIAEA-GKTVVTTIH 353
+V+++ ++ A G T V H
Sbjct: 179 MGVLVKLISELNSALGVTCVVVSH 202
|
Length = 269 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 2e-10
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 14/174 (8%)
Query: 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---KSKIGFVTQDDVL 240
++ A +G +G+GKTT L++L+G L P G++ +L + +G Q ++L
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLL--PPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300
F HLTV E + + A L+ + + Q E A+ + + GL ++ + +SGG
Sbjct: 1015 FHHLTVAEHILFYAQLK-GRSWEEAQLEMEAM--LEDTGLHHKRNEE-----AQDLSGGM 1066
Query: 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
++++ + + + ++ LDEPTSG+D + I +L +G+T++ + H
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY-RSGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 53/200 (26%), Positives = 96/200 (48%), Gaps = 26/200 (13%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTV---GGSITY 218
+ L+ I+ +V AL+GPSG GK+T L +L+ G +E + G +I Y
Sbjct: 18 DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI-Y 76
Query: 219 NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ H L+ ++G V Q FP ++ E + Y LR+ K +R +
Sbjct: 77 DPHVDVVELRRRVGMVFQKPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHA 133
Query: 279 GL-----ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L +R ++ +G +SGG+++R+CI + + P +L +DEP S LD +
Sbjct: 134 ALWDEVKDRLHESALG------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQK 187
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
I +++ ++ +A T++ H
Sbjct: 188 IEELIHEL-KARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 10/188 (5%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 227
L+GI V PGE + L G +G+GK+TL+ +LSG T G I ++ P +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDT 286
++ I + Q+ L P L+V E + + LP RA +++ EL L+ T
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
G + GG+++ V I + LL LDEP+S L ++ +++D+ G
Sbjct: 137 RPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGV 192
Query: 347 TVVTTIHQ 354
V H+
Sbjct: 193 ACVYISHK 200
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-10
Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 66/182 (36%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G++ SV GEV AL+G +G+GK+TL+ +LSG L +P G I + S +
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSG-LYKPD-SGEILVDGKEVSFASPRDAR 73
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
++ I V Q L+V E +Q +E
Sbjct: 74 RAGIAMVYQ-------LSVGE----------------RQM------------VE------ 92
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
I R ++ R ++I LDEPT+ L R+ ++++ + G
Sbjct: 93 I----ARALARNAR--------LLI------LDEPTAALTPAEVERLFKVIRRLRAQGVA 134
Query: 348 VV 349
V+
Sbjct: 135 VI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 3e-10
Identities = 57/200 (28%), Positives = 86/200 (43%), Gaps = 51/200 (25%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP----------------Y 223
PG+V+ ++GP+G GK+T L +L+G L P +G Y D P Y
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELK-PNLG---RYEDPPSWDEVIKRFRGTELQNY 152
Query: 224 SKSLKS-------KIGFVTQDDVLFPHL---TVKETLTYAALLRLPNTLTKQQKEKRAID 273
K L K +V L P + V E L K + + +
Sbjct: 153 FKKLYEGELRAVHKPQYVD----LIPKVVKGKVGELLK------------KVDERGKFDE 196
Query: 274 VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
V+ LGLE D V +SGGE +RV I ++ + + F DEP+S LD L
Sbjct: 197 VVERLGLENVLDRD-----VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLN 251
Query: 334 IVQMLQDIAEAGKTVVTTIH 353
++++++AE GK V+ H
Sbjct: 252 AARVIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-10
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 34/195 (17%)
Query: 185 VLALMGPSGSGKTTLLNLL------------SGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
V A++GPSG GK+T L + +G LM G Y L+ KIG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM---FDGEDIYGKFTDEVLLRKKIG 123
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDT 286
V Q FP ++ + + Y L +K+ ++ I E L + D
Sbjct: 124 MVFQKPNPFPK-SIFDNIAYGPRLH-------GINDKKQLEEIVEKSLRKAALWDEVSDR 175
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ + G+SGG+++R+C+ + + P +L LDEPTS LD +I ++Q++
Sbjct: 176 LDKNAL--GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSY 232
Query: 347 TVVTTIH--QPSSRL 359
T++ H Q +SR+
Sbjct: 233 TIMIVTHNMQQASRV 247
|
Length = 286 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 50/184 (27%), Positives = 93/184 (50%), Gaps = 27/184 (14%)
Query: 183 GEVLALMGPSGSGKTTLLNLLS--GRLMEP-TVGGSITYN-DHPYSKSL-----KSKIGF 233
G+V AL+GPSG GK+T+L L+ L+E ++ G + ++ Y + + +IG
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 234 VTQDDVLFPHLTVKETLTYAALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTM 287
V Q FP ++ E + + A R+ + L ++ K A+ + C+D +
Sbjct: 99 VFQQPNPFPK-SIYENIAFGA--RINGYTGDMDELVERSLRKAAV-------WDECKDKL 148
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
+ +SGG+++R+CI I I P ++ +DEP S LD + L+I + + ++ +
Sbjct: 149 NESGY--SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 348 VVTT 351
V+ T
Sbjct: 207 VIVT 210
|
Length = 269 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 4e-10
Identities = 51/193 (26%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 184 EVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPY------SKSLKSKIGFV 234
+++A +GPSG GK+TLL N ++ + V G + Y D S L+ ++G V
Sbjct: 47 KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMV 106
Query: 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QDTMI 288
Q FP ++ E + +A + K +D + E L R +D +
Sbjct: 107 FQRPNPFPK-SIYENIAFAP---------RANGYKGNLDELVEDSLRRAAIWEEVKDKLK 156
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
+SGG+++R+CI I + P +L +DEP S LD + ++ ++ ++ E T+
Sbjct: 157 EKG--TALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQ-YTI 213
Query: 349 VTTIH--QPSSRL 359
+ H Q +SR+
Sbjct: 214 IMVTHNMQQASRV 226
|
Length = 274 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 4e-10
Identities = 53/190 (27%), Positives = 93/190 (48%), Gaps = 20/190 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E+ +LN + + G+ +A++G SG GK+TLL LL+G +E G + P +++ +
Sbjct: 24 ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG--LETPSAGELLAGTAPLAEA-R 80
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTM 287
+ QD L P V + + L L K Q A+ + +GL +R +
Sbjct: 81 EDTRLMFQDARLLPWKKVIDNVG----LGL-----KGQWRDAALQALAAVGLADRANE-- 129
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGK 346
+ +SGG+++RV + +I P LL LDEP LD+ T + + +++ + + G
Sbjct: 130 ----WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGF 185
Query: 347 TVVTTIHQPS 356
TV+ H S
Sbjct: 186 TVLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 4e-10
Identities = 57/221 (25%), Positives = 99/221 (44%), Gaps = 25/221 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVGGSITYNDHPYSK 225
L I V+ +V AL+GPSG GK+T L +L G E G I + D+
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYE---GEIILHPDNVNIL 88
Query: 226 S-------LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
S ++ +I V Q FP ++ E + Y LR+ + E+R + +
Sbjct: 89 SPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYG--LRIRGVKRRSILEERVENALRNA 145
Query: 279 GL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L + +D + G +SGG+++R+CI + +P +L DEPTS LD I ++
Sbjct: 146 ALWDEVKDRL--GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEEL 203
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
+ D+ ++ T + + + + +G+ L+ FG
Sbjct: 204 ISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGE--LIEFG 242
|
Length = 265 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 25/195 (12%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYN-------- 219
N + S+ GE L ++G SGSGK+ L+ LL+ GR +GGS T+N
Sbjct: 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR-----IGGSATFNGREILNLP 87
Query: 220 DHPYSKSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +K +I + QD + L P++ V E L +L L ++K + + ++ +++
Sbjct: 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLM--EVLMLHKGMSKAEAFEESVRMLDA 145
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ + + M + SGG R+RV I ++ P LL DEPT+ LD T +I+ +
Sbjct: 146 VKMPEARKRM--KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTL 203
Query: 338 LQDIAEAGKTVVTTI 352
L ++ T + I
Sbjct: 204 LNELKREFNTAIIMI 218
|
Length = 330 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-10
Identities = 48/214 (22%), Positives = 93/214 (43%), Gaps = 38/214 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
+L ++ V GE + ++G +G+GK+TL+ L R +E G I + S L
Sbjct: 23 VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAE-EGKIEIDGIDISTIPLEDL 80
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+S + + QD LF T++ L D +E E +
Sbjct: 81 RSSLTIIPQDPTLFSG-TIRSNL----------------------DPFDEYSDEEIYGAL 117
Query: 288 I---GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
GG +S G+R+ +C+ ++ P +L LDE T+ +D T I + +++
Sbjct: 118 RVSEGGL---NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE-EFT 173
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378
T++T H+ + + +DK++++ G + +
Sbjct: 174 NSTILTIAHRLRTII--DYDKILVMDAGEVKEYD 205
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 7e-10
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY-----SKSL 227
L+ ++ V GE+++L G +G+GK+TL+ +LSG T G I + +
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTE 80
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLE 281
++ I + Q+ L L+V E + L N +T RA ++ +L L+
Sbjct: 81 RAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRAQKLLAQLKLD 134
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-DSTTA--LRIVQML 338
T V + G+++ V I + LL LDEPT+ L +S TA L I++ L
Sbjct: 135 INPATP-----VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL 189
Query: 339 QD 340
+
Sbjct: 190 KA 191
|
Length = 506 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 7e-10
Identities = 57/195 (29%), Positives = 86/195 (44%), Gaps = 46/195 (23%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241
G+V ++GP+G GKTT + +LSG L+ P +G Y + P + D+VL
Sbjct: 98 EGKVTGILGPNGIGKTTAVKILSGELI-PNLGD---YEEEP------------SWDEVL- 140
Query: 242 PHLTVKETLTYAALLR---------------LP-------NTLTKQQKEKRAID-VINEL 278
E Y L +P L K+ E+ +D V+ L
Sbjct: 141 KRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERL 200
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
GLE D I +SGGE +RV I ++ + F DEPTS LD L + +++
Sbjct: 201 GLENILDRDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLI 255
Query: 339 QDIAEAGKTVVTTIH 353
+++AE GK V+ H
Sbjct: 256 RELAE-GKYVLVVEH 269
|
Length = 590 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (146), Expect = 8e-10
Identities = 48/192 (25%), Positives = 91/192 (47%), Gaps = 15/192 (7%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYND 220
K +L+ + + +V A +GPSG GK+T L +L+ G E + G+ T +
Sbjct: 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
S L+++IG V Q F +++ + + Y R ++ EK + L
Sbjct: 155 KISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 281 -ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ +D + +SGG+++R+CI I + P +L +DEPTS LD +I +++
Sbjct: 212 WDEVKDDLDKAG--NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELIL 269
Query: 340 DIAEAGKTVVTT 351
++ + ++ T
Sbjct: 270 ELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 9e-10
Identities = 49/190 (25%), Positives = 91/190 (47%), Gaps = 23/190 (12%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTL---LNLLSGRLMEPTVGGSITY-NDH 221
+ + IL G++ + +V A++GPSG GK+T LN ++ E V G + + N +
Sbjct: 16 YYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQN 75
Query: 222 PYSKS-----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
Y + L+ ++ V LFP ++V + + Y + + K ID I
Sbjct: 76 IYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKI-------VGWRPKLEIDDIV 127
Query: 277 ELGLERCQ-----DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
E L+ I S + +SGG+++R+CI + + P +L +DEP GLD +
Sbjct: 128 ESALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIAS 186
Query: 332 LRIVQMLQDI 341
+++ ++Q +
Sbjct: 187 MKVESLIQSL 196
|
Length = 261 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 24/216 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
++ ++ S+ GE+L + G G+G+T L+ L G G++ N P +++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEGNVFINGKPVDIRNPAQAI 334
Query: 228 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDV-INELGLER 282
++ I V +D + P L V + +T + L E + I I L ++
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 283 CQ-DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
IG +SGG +++ + ++ NP +L LDEPT G+D I +++ +
Sbjct: 395 ASPFLPIGR-----LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL 449
Query: 342 AEAGKTVVTTIHQPSSRLFHKF---DKLILLGKGSL 374
A+ G ++ SS L D+++++G+G L
Sbjct: 450 AQEGVAIIVV----SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 25/177 (14%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT + LL+G +++P G S K + +++ D
Sbjct: 362 GEIYDGEVIGILGPNGIGKTTFVKLLAG-VIKPDEGSEEDLK-----VSYKPQ--YISPD 413
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297
+ TV++ L A ++ K +++ L LE + V +S
Sbjct: 414 ---YDG-TVEDLLRSAIRSAFGSSYFKT-------EIVKPLNLEDLLE-----RPVDELS 457
Query: 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIH 353
GGE +RV I + L LDEP++ LD + + ++++ E KT + H
Sbjct: 458 GGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDH 514
|
Length = 591 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 15/188 (7%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S E+ + + V+ GE L + G +G+GKTTLL +L+G L + G I + ++
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVES--GQIQIDGKTATR 77
Query: 226 SLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+S+ + ++ L L+ E L + L + +Q A+ ++ GL +
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGL---HGRRAKQMPGSALAIV---GLAGYE 131
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAE 343
DT+ VR +S G++KR+ + + L LDEP + LD + +M+ +
Sbjct: 132 DTL-----VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG 186
Query: 344 AGKTVVTT 351
G +VTT
Sbjct: 187 GGAALVTT 194
|
Length = 214 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (142), Expect = 2e-09
Identities = 59/229 (25%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 168 EEKDI--LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME----PTVGGSITYNDH 221
+E D+ LNG++ S+ GE ++++G +GSGK+T L+ G E + G + ++
Sbjct: 16 KESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAEN 75
Query: 222 PYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKR---AIDVIN 276
++ L+ KIG V Q+ D F TV++ + + + N + +++ KR A+ +N
Sbjct: 76 VWN--LRRKIGMVFQNPDNQFVGATVEDDVAFG----MENQGIPREEMIKRVDEALLAVN 129
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L + + + SGG+++RV + I + P ++ LDE TS LD T I++
Sbjct: 130 MLDFKTREPARL--------SGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
++ +I E + V +I D+++++ G ++ SE A
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASS-DRILVMKAGEIIKEAAPSELFA 229
|
Length = 277 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-09
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +++ K +L I+ ++NPG+ + L+G +G+GK+TLL L++G L E
Sbjct: 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-E 51
Query: 210 PTVGGSITYNDHPYSKSLKSKIGFVTQ 236
P G +T+ KIG+ Q
Sbjct: 52 PDE-GIVTWGS-------TVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKI--G 232
I+ V GE+L L G G+G+T L L G + P GG I N + S ++ G
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG--LRPARGGRIMLNGKEINALSTAQRLARG 339
Query: 233 FV-----TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
V Q L+ L AL + + A+ LER + +
Sbjct: 340 LVYLPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAV-------LERYRRAL 390
Query: 288 IGGSF------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
F R +SGG +++V I + +P LL +DEPT G+D + I Q+++ I
Sbjct: 391 -NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI 449
Query: 342 AEAGKTVV 349
A V+
Sbjct: 450 AAQNVAVL 457
|
Length = 510 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-09
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 27/195 (13%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTL------LNLLS-GRLMEPTVGGSI--TYNDHPYS 224
+ + + GE+ LMG SGSGK+TL LN +S G ++ GS+ D
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 225 KSLKSK-IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+ L++ + V Q L P TV+E + + ++ + K ++ KR + + +GL +
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQ---GMPKAERRKRVDEQLELVGLAQW 157
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD--- 340
D G +SGG ++RV + +L +DEP S LD I LQD
Sbjct: 158 ADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPL----IRTQLQDELL 208
Query: 341 --IAEAGKTVVTTIH 353
++ KT+V H
Sbjct: 209 ELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 53/187 (28%), Positives = 89/187 (47%), Gaps = 23/187 (12%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQD 237
G+VL L+GP+G GK+T L +L+G+L P +G ++D P + + L G Q+
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLK-PNLG---KFDDPPDWDEILDEFRGSELQN 77
Query: 238 DVLFPHL---TVKETLTYAALLRLPNT-------LTKQQKEKRAID-VINELGLERCQDT 286
F L VK + + +P L K++ E+ +D ++++L L D
Sbjct: 78 --YFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
I +SGGE +RV I + + F DEP+S LD L ++++++AE
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 347 TVVTTIH 353
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 64/203 (31%)
Query: 159 VILK-GMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
++L G+ S ++ IL+ ++ VNPGE ++GP+G+GK+TLL+L++G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG------------ 308
Query: 218 YNDHP--YSKSL----------------KSKIGFVTQDDVLFPHL------TVKETL--- 250
DHP YS L K IG+V+ HL +V+ +
Sbjct: 309 --DHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSS----LHLDYRVSTSVRNVILSG 362
Query: 251 ------TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304
Y A +QQ K A ++ LG+ D + +S G+++
Sbjct: 363 FFDSIGIYQA------VSDRQQ--KLAQQWLDILGI----DKRTADAPFHSLSWGQQRLA 410
Query: 305 CIGNEIIINPSLLFLDEPTSGLD 327
I ++ +P+LL LDEP GLD
Sbjct: 411 LIVRALVKHPTLLILDEPLQGLD 433
|
Length = 490 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 24/223 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKT----TLLNLLS--GRLMEPTVGGSITYNDHPYSK-SLK 228
I+ SV GEV+ ++G SGSGK+ ++ L+ GR+M + +N + S K
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVM----AEKLEFNGQDLQRISEK 81
Query: 229 SK-------IGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ + + QD + L P TV + A +++ K+ + +RAID++N++G
Sbjct: 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVG 139
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ + + +SGG +RV I I P LL DEPT+ LD T +I+++L
Sbjct: 140 IPDPASRL--DVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLL 197
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
++ + + I + + K+I++ G ++ GKA +
Sbjct: 198 ELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHD 240
|
Length = 326 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 9e-09
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 43/236 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I+ + G++LA+ G +GSGK++LL ++ G L EP+ G I ++ +I
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPS-EGKIKHS---------GRI 489
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER------CQD 285
F Q + P T+K+ + + E R VI LE +D
Sbjct: 490 SFSPQTSWIMPG-TIKDNIIFGL----------SYDEYRYTSVIKACQLEEDIALFPEKD 538
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAE 343
+ G +SGG+R R+ + + + L LD P + LD T I + + + ++
Sbjct: 539 KTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598
Query: 344 AGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASEAMAY---FSS--IGC 392
+ +VT S+L H K DK++LL +G ++G SE A FSS +G
Sbjct: 599 KTRILVT------SKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL 648
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 1e-08
Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 15/195 (7%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV 239
+ PG+V+A++G SG+GKTTLL ++ G + Y
Sbjct: 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKG--------RGEEKYRPDSGKVEVPKNTVSA 457
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
L P + +L + +K A++++N GL D ++ +S G
Sbjct: 458 LIPG-EYEPEFGEVTILE--HLRSKTGDLNAAVEILNRAGL---SDAVLYRRKFSELSTG 511
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR 358
+++R + + P++L +DE + LD TA+R+ + + ++A EAG T++ H+P
Sbjct: 512 QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVG 571
Query: 359 LFHKFDKLILLGKGS 373
+ D LIL+G G
Sbjct: 572 NALRPDTLILVGYGK 586
|
Length = 593 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 48/205 (23%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
LN ++ + GE+ ++G SG+GK+TL+ ++ L PT G + + +
Sbjct: 21 LNNVSLHIPAGEIFGVIGASGAGKSTLIRCIN-LLERPT-SGRVLVDGQDLTALSEKELR 78
Query: 226 SLKSKIGFVTQ-----------DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDV 274
+ +IG + Q D+V P L L T K + + R
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFDNVALP-------------LELAGT-PKAEIKAR---- 120
Query: 275 INEL----GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330
+ EL GL D + +SGG+++RV I + NP +L DE TS LD T
Sbjct: 121 VTELLELVGLSDKADR-----YPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 331 ALRIVQMLQDI-AEAGKTVVTTIHQ 354
I+++L+DI E G T+V H+
Sbjct: 176 TRSILELLKDINRELGLTIVLITHE 200
|
Length = 343 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
G + GEV+ ++GP+G GKTT LL+G L +P G + KI + Q
Sbjct: 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEG----------EVDPELKISYKPQ- 407
Query: 238 DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-------VINELGLERCQDTMIGG 290
++ T LLR + +I L LER D
Sbjct: 408 -----YIKPDYDGTVEDLLR---------SITDDLGSSYYKSEIIKPLQLERLLD----- 448
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTV 348
V+ +SGGE +RV I + + L LDEP++ LD L + + ++ IAE T
Sbjct: 449 KNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATA 507
|
Length = 590 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 52/239 (21%), Positives = 105/239 (43%), Gaps = 31/239 (12%)
Query: 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYND- 220
TS ++ ++ ++N GE+ L+G SGSGK+ + + G + + ++D
Sbjct: 14 KTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73
Query: 221 -------HPYSKSLKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQ----- 266
K + + + Q+ L P V L +P K +
Sbjct: 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN----IPAWTYKGRWWQRF 129
Query: 267 --KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+++RAI++++ +G++ +D M S+ ++ GE ++V I + P LL DEPT+
Sbjct: 130 GWRKRRAIELLHRVGIKDHKDIM--RSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
++ TT +I ++L + + T + I + DK+ ++LY G+ E+
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI------NVLYCGQTVES 240
|
Length = 330 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 62/219 (28%), Positives = 98/219 (44%), Gaps = 34/219 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI 231
+L I + GE+LA+ G +GSGKT+LL L+ G L EP+ G I ++ +I
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPS-EGKIKHS---------GRI 100
Query: 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC------QD 285
F +Q + P T+KE + + E R V+ LE +D
Sbjct: 101 SFSSQFSWIMPG-TIKENIIFGV----------SYDEYRYKSVVKACQLEEDITKFPEKD 149
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
+ G +SGG+R R+ + + + L LD P LD T I + A
Sbjct: 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMAN 209
Query: 346 KTVVTTIHQPSSRLFH--KFDKLILLGKGSLLYFGKASE 382
KT + +S++ H K DK+++L +GS ++G SE
Sbjct: 210 KTRILV----TSKMEHLKKADKILILHEGSSYFYGTFSE 244
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 52/176 (29%), Positives = 84/176 (47%), Gaps = 27/176 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
++ IL+ I ++ PG + L+G +G+GK+TL+ LL+G L P G + +K +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSG------EIGLAKGI- 375
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
K+G+ Q + F L E+ L RL +Q+ D + G + + T
Sbjct: 376 -KLGYFAQHQLEF--LRADES-PLQHLARLAPQELEQKLR----DYLGGFGFQGDKVTEE 427
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
F SGGE+ R+ + + P+LL LDEPT+ LD + M Q + EA
Sbjct: 428 TRRF----SGGEKARLVLALIVWQRPNLLLLDEPTNHLD-------LDMRQALTEA 472
|
Length = 638 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
+N ++ ++ GE+L + G G+G+T L+ +L G L P G +T + H L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL--PRTSGYVTLDGHEVVTRSPQDGL 325
Query: 228 KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAI-DVINELGLE 281
+ I ++++D D L ++VKE ++ AL K E++A+ D I ++
Sbjct: 326 ANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 282 R-CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
+ IG +SGG +++V I ++ P +L LDEPT G+D
Sbjct: 386 TPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 1e-07
Identities = 43/148 (29%), Positives = 80/148 (54%), Gaps = 11/148 (7%)
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLER 282
K L++ V+Q+ +LF ++++ E + + + T K+ + AID E L
Sbjct: 1292 KDLRNLFSIVSQEPMLF-NMSIYENIKFG---KEDATREDVKRACKFAAIDEFIE-SLPN 1346
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
DT +G + + +SGG+++R+ I ++ P +L LDE TS LDS + I + + DI
Sbjct: 1347 KYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405
Query: 343 E-AGKTVVTTIHQPSSRLFHKFDKLILL 369
+ A KT++T H+ +S + DK+++
Sbjct: 1406 DKADKTIITIAHRIAS--IKRSDKIVVF 1431
|
Length = 1466 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 29/226 (12%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S E+ L+ I V G ++A++G +G GKT+L++ + G L P S+
Sbjct: 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVV-------- 676
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ + +V Q +F + TV++ + + + ++ +RAIDV L+ D
Sbjct: 677 -IRGTVAYVPQVSWIF-NATVRDNILFGSPF-------DPERYERAIDVT---ALQHDLD 724
Query: 286 TMIGGSFV----RGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
+ GG RGV SGG+++RV + + N + D+P S LD+ ++
Sbjct: 725 LLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCI 784
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
GKT V +Q + D++IL+ +G + G E
Sbjct: 785 KDELRGKTRVLVTNQ--LHFLSQVDRIILVHEGMIKEEGTYEELSN 828
|
Length = 1622 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 44/183 (24%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 159 VILKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217
+ ++ +T + + + + GE LA++G +G GKTTLL L G L EP G++
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPD-SGTVK 377
Query: 218 YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+++ + IG+ QD +A N LT D +++
Sbjct: 378 WSE-------NANIGYYAQD--------------HAY--DFENDLT-------LFDWMSQ 407
Query: 278 LGLERCQDTMIGGSF-------------VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
E + + G+ V+ +SGGE+ R+ G ++ P++L +DEPT+
Sbjct: 408 WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467
Query: 325 GLD 327
+D
Sbjct: 468 HMD 470
|
Length = 530 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 59/246 (23%), Positives = 111/246 (45%), Gaps = 33/246 (13%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+K +V+YK + S EK L+ + V GE L ++G +GSGK+T+ ++ L+
Sbjct: 5 IKCKNVSYK--YESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI- 61
Query: 210 PTVGGSITYN----DHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTK 264
P+ G D +++K G V Q+ D V+E + + P L
Sbjct: 62 PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-----PENLGI 116
Query: 265 QQKEKRAIDVINELGLERCQDTM--IGGSFVRG-----VSGGERKRVCIGNEIIINPSLL 317
+E R ER +++ +G R +SGG+++RV I + + P +
Sbjct: 117 PPEEIR----------ERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECI 166
Query: 318 FLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376
DEPT+ LD + +V ++++ + G T++ H + + D++I++ G ++
Sbjct: 167 IFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAV--EADRIIVMDSGKVVM 224
Query: 377 FGKASE 382
G E
Sbjct: 225 EGTPKE 230
|
Length = 280 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 28/182 (15%)
Query: 179 SVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237
S+ GE LA++G SGSGK+ T L L+ RL+E GG + + + + I Q
Sbjct: 38 SLQRGETLAIVGESGSGKSVTALALM--RLLEQA-GGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 238 DV--------------------LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
L P TV E + A +RL ++++ A ++++
Sbjct: 95 AAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASREEAMVEAKRMLDQ 152
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+ + Q I + +SGG R+RV I + P++L DEPT+ LD T +I+Q+
Sbjct: 153 VRIPEAQ--TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210
Query: 338 LQ 339
++
Sbjct: 211 IK 212
|
Length = 623 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 2e-07
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 53/218 (24%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225
K IL I+ S PG + ++G +G+GK+TLL +++G D +
Sbjct: 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-------------DKEFEGEARP 66
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETL------TYAALLRL---------PN-----TLTKQ 265
+ K+G++ Q+ L P TV+E + AAL R P+ +Q
Sbjct: 67 APGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQ 126
Query: 266 QKEKRAIDVINELGLE----------RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315
+ + ID + L+ RC + V +SGGER+RV + ++ P
Sbjct: 127 GELQEIIDAADAWDLDSQLEIAMDALRCPP---WDAKVTKLSGGERRRVALCRLLLEKPD 183
Query: 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+L LDEPT+ LD+ + + Q L D G TVV H
Sbjct: 184 MLLLDEPTNHLDAESVAWLEQFLHDY--PG-TVVAVTH 218
|
Length = 556 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 61/265 (23%), Positives = 117/265 (44%), Gaps = 36/265 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-------- 224
LN + + +V ++G +GSGK+T++ L +G ++ T G D+
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISET--GQTIVGDYAIPANLKKIKE 84
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLE 281
K L+ +IG V Q FP + + + P L KQ+ K+ +++ + L
Sbjct: 85 VKRLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLP 140
Query: 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341
D + F +SGG+++RV + I ++ + L LDEPT GLD + + + +
Sbjct: 141 E--DYVKRSPF--ELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERL 196
Query: 342 -AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400
E K ++ H ++ D++I++ +G ++ G E FS+ +I ++P
Sbjct: 197 NKEYKKRIIMVTHN-MDQVLRIADEVIVMHEGKVISIGSPFEI---FSNQELLTKIEIDP 252
Query: 401 AEFL----------LDLANGNLHDV 415
+ +DL N N+ +
Sbjct: 253 PKLYQLMYKLKNKGIDLLNKNIRTI 277
|
Length = 289 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 18/190 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
++ +L I+ + G +L L G +G+GKTTLL L++G L+ P G I + K L
Sbjct: 12 HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAG-LLNPE-KGEILFERQSIKKDL 69
Query: 228 ---KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+ ++ FV + P+LT++E Y + ++ LE
Sbjct: 70 CTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLI 121
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
D G +S G++++V + + L LDEP LD + L I+ +Q+
Sbjct: 122 DYPCG-----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 345 GKTVVTTIHQ 354
G V+ T HQ
Sbjct: 177 GGAVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 51/200 (25%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
++ +L I SV +AL+G +GSGK+TL +LL G P G I + P S
Sbjct: 352 DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY--PLTEGEIRLDGRPLSSLS 409
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
L+ + V QD V+ A TL + E++ + + L
Sbjct: 410 HSVLRQGVAMVQQDPVVL-----------ADTFLANVTLGRDISEEQVWQALETVQLAEL 458
Query: 284 QDTMIGGSFVR------GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
++ G + +S G+++ + + ++ P +L LDE T+ +DS T I Q
Sbjct: 459 ARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQA 518
Query: 338 LQDIAEAGKTVVTTIHQPSS 357
L + E T+V H+ S+
Sbjct: 519 LAAVREH-TTLVVIAHRLST 537
|
Length = 592 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL---- 227
+L+ T ++NPG+ + L+G +G GK+TLL LL + GGS T+ P + L
Sbjct: 16 LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI--SADGGSYTF---PGNWQLAWVN 70
Query: 228 -------KSKIGFVTQDDVLFPHLTVKETLTYA-------ALLRLPNTLTKQQK---EKR 270
+ + +V D + L + L A A+ + L R
Sbjct: 71 QETPALPQPALEYVIDGDREYRQLEAQ--LHDANERNDGHAIATIHGKLDAIDAWTIRSR 128
Query: 271 AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
A +++ LG Q V SGG R R+ + +I LL LDEPT+ LD
Sbjct: 129 AASLLHGLGFSNEQLERP----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 26/226 (11%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225
K +L + + PG+ + + G +GSGK++L L+ M G I + SK
Sbjct: 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGIDISKLPLH 91
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+L+S++ + QD +LF + +R + + R + + L+
Sbjct: 92 TLRSRLSIILQDPILF-----------SGSIRFNLDPECKCTDDRLWEALEIAQLKNMVK 140
Query: 286 TMIGGSFVRGVSGGE------RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ GG GGE R+ C+ + S+L +DE T+ +D T I+Q +
Sbjct: 141 SLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATE-NILQKVV 199
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A A +TVVT H+ S+ L D +++L +G L+ +A
Sbjct: 200 MTAFADRTVVTIAHRVSTIL--DADLVLVLSRGILVECDTPENLLA 243
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 4e-07
Identities = 49/198 (24%), Positives = 99/198 (50%), Gaps = 29/198 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN----DHPYSKSLK 228
L+ I + G++ ++G G GK++LL + G + T+ G + ++ P ++ +
Sbjct: 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEATR 74
Query: 229 SK----IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN---ELGLE 281
S+ + + Q L + TV+E +T+ + +Q+ K D + ++ L
Sbjct: 75 SRNRYSVAYAAQKPWLL-NATVEENITFGSPF-------NKQRYKAVTDACSLQPDIDLL 126
Query: 282 RCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-- 336
D T IG RG+ SGG+R+R+C+ + N +++FLD+P S LD + ++Q
Sbjct: 127 PFGDQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEG 183
Query: 337 MLQDIAEAGKTVVTTIHQ 354
+L+ + + +T+V H+
Sbjct: 184 ILKFLQDDKRTLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 53/192 (27%), Positives = 97/192 (50%), Gaps = 21/192 (10%)
Query: 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-------DHPYSKS 226
+G+T + GE L ++G SG GK+T + G L++ T G + + ++
Sbjct: 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIG-LVKAT-DGEVAWLGKDLLGMKDDEWRA 95
Query: 227 LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLER 282
++S I + QD + L P +T+ E + A LR P L++Q+ + R ++ ++GL
Sbjct: 96 VRSDIQMIFQDPLASLNPRMTIGEII--AEPLRTYHPK-LSRQEVKDRVKAMMLKVGL-- 150
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI- 341
+I + SGG+ +R+ I +I+ P L+ DEP S LD + ++V +LQ +
Sbjct: 151 -LPNLIN-RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208
Query: 342 AEAGKTVVTTIH 353
E G +++ H
Sbjct: 209 REMGLSLIFIAH 220
|
Length = 331 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 7e-07
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEPTVGGSITYNDHPY 223
S K L+ I + G ++A++G +G GKT+L++ + G L E +
Sbjct: 626 SKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS------------ 673
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NELGL 280
S ++ + +V Q +F + TV+E + + + + ++ RAIDV ++L L
Sbjct: 674 SVVIRGSVAYVPQVSWIF-NATVRENILFGSDF-------ESERYWRAIDVTALQHDLDL 725
Query: 281 ERCQD-TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+D T IG RGV SGG+++RV + + N + D+P S LD+ A ++
Sbjct: 726 LPGRDLTEIGE---RGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372
GKT V +Q D++IL+ +G
Sbjct: 783 CMKDELKGKTRVLVTNQ--LHFLPLMDRIILVSEG 815
|
Length = 1495 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-06
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
SGGE+ R+ + ++ NP+LL LDEPT+ LD + + + L++
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE 115
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 46/166 (27%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSL 227
L+G +V PG V+AL+G +G+GK+T++ +L+G + GSI Y + S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTG--IYTRDAGSILYLGKEVTFNGPKSSQ 77
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT----LTKQQKEKRAIDVINELGLERC 283
++ IG + Q+ L P LT+ E + L R + ++ A ++ L L
Sbjct: 78 EAGIGIIHQELNLIPQLTIAENIF---LGREFVNRFGRIDWKKMYAEADKLLARLNLRFS 134
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329
D ++G +S GE++ V I + ++ +DEPT L T
Sbjct: 135 SDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175
|
Length = 501 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 51/195 (26%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYSKSL 227
+L I+ S++PG+ + L+G +GSGK+TLL+ RL+ + + G +++N P K
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTEGDIQIDG-VSWNSVPLQKWR 76
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-- 285
K+ G + Q +F T ++ L P + ++ V E+GL+ +
Sbjct: 77 KA-FGVIPQKVFIFSG-TFRKNLD-------PY---GKWSDEEIWKVAEEVGLKSVIEQF 124
Query: 286 ------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
++ G V +S G ++ +C+ ++ +L LDEP++ LD T I + L+
Sbjct: 125 PGQLDFVLVDGGCV--LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182
Query: 340 DIAEAGKTVVTTIHQ 354
A A TV+ + H+
Sbjct: 183 Q-AFADCTVILSEHR 196
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 51/217 (23%), Positives = 100/217 (46%), Gaps = 34/217 (15%)
Query: 153 TDVTYKVIL--KGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
+ +VIL + +TS + I + ++ ++ GE+L + G G+ +T ++ L G +
Sbjct: 243 ENKPGEVILEVRNLTSLRQPSIRD-VSFDLHKGEILGIAGLVGAKRTDIVETLFG--IRE 299
Query: 211 TVGGSI-----TYNDHPYSKSLKSKIGFVTQD----------DVLFPHL--TVKETLTYA 253
G+I N+H ++++ VT++ D+ F L ++
Sbjct: 300 KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359
Query: 254 ALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNEIII 312
LL N+ K + VI+ + ++ T IG +SGG +++V IG ++
Sbjct: 360 GLLD--NSRMKSDTQW----VIDSMRVKTPGHRTQIGS-----LSGGNQQKVIIGRWLLT 408
Query: 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
P +L LDEPT G+D I Q++ ++A+ K ++
Sbjct: 409 QPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGII 445
|
Length = 491 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 62/226 (27%), Positives = 102/226 (45%), Gaps = 34/226 (15%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-----SITY-NDH 221
E K +L ++ SV G++ ++G +GSGK+TLL L + E + G SI Y
Sbjct: 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQ 729
Query: 222 PY--SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279
+ + +++ I F ++D V+ + A L +L G
Sbjct: 730 AWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGG------------------G 771
Query: 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
LE T IG V +SGG++ RV + + N + LD+P S LD+ R+V+
Sbjct: 772 LE----TEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECF 826
Query: 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
A AGKT V HQ + + D ++ LG G + + G +++ M
Sbjct: 827 LGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFMR 870
|
Length = 1560 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 158 KVI-LKGMTSS-EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215
KVI + ++ +K +++ ++ + PG ++ ++GP+G+GK+TL +++G E G+
Sbjct: 321 KVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITG--QEQPDSGT 378
Query: 216 ITYNDHPYSKSLKSKIGFVTQD-DVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRA-I 272
I + K+ +V Q D L P+ TV E ++ +++ L K++ RA +
Sbjct: 379 IKIGE-------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQ----LGKREVPSRAYV 427
Query: 273 DVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332
N G + Q +G +SGGER RV + + ++L LDEPT+ LD T L
Sbjct: 428 GRFNFKGSD--QQKKVG-----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET-L 479
Query: 333 R 333
R
Sbjct: 480 R 480
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 55/220 (25%), Positives = 96/220 (43%), Gaps = 30/220 (13%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L+ I+ G+V+ L+G +GSGK+TL N++ G L PTVG + +
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGE----------VS 88
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVI--NELGLERCQDTMI 288
+ L LT E + + L + ++KE +A+ +I +ELG Q
Sbjct: 89 VIAISAGLSGQLTGIENIEFKMLC-----MGFKRKEIKAMTPKIIEFSELGEFIYQP--- 140
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V+ S G R ++ I +NP +L +DE S D T A + + + + E KT+
Sbjct: 141 ----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTI 196
Query: 349 VTTIHQPSSRLFHKF-DKLILLGKGSLLYFGKASEAMAYF 387
H + +F K+ + G L +G+ + + +
Sbjct: 197 FFVSH--NLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKY 234
|
Length = 264 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 39/223 (17%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDI------------LNGITGSVNPGEVLALMGPSGSGKT 197
+KF VT K + + KD+ LN I+ V GE++ ++G +GSGK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 198 TLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257
TL NL++G M P G + +K + L LT E + L+
Sbjct: 65 TLSNLIAGVTM-PNKG----------TVDIKGSAALIAISSGLNGQLTGIENIELKGLMM 113
Query: 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF----VRGVSGGERKRVCIGNEIIIN 313
LTK++ ++ ++I + G F V+ S G + R+ + IN
Sbjct: 114 ---GLTKEKIKEIIPEIIEFADI---------GKFIYQPVKTYSSGMKSRLGFAISVHIN 161
Query: 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
P +L +DE S D T + + + + E GKT+ H S
Sbjct: 162 PDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
|
Length = 549 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 56/212 (26%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLN---LLSGRLMEPTVGGSITYNDHPYSKSLKS 229
L + S+ ++ + G SGSGK+TL+N SG+ K ++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKAR---------LISFL-PKFSRN 60
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
K+ F+ Q L + L Y L + +TL
Sbjct: 61 KLIFIDQLQFL-----IDVGLGYLTLGQKLSTL--------------------------- 88
Query: 290 GSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347
SGGE +RV + +E+ P +L LDEP++GL +++++++ + + G T
Sbjct: 89 -------SGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNT 141
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
V+ H + D +I G GS GK
Sbjct: 142 VILIEHNL--DVLSSADWIIDFGPGSGKSGGK 171
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 41/237 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G++ + P E + ++G +GSGK+TLL L R++E GG I N + L
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL-LTFMRMVE-VCGGEIRVNGREIGAYGLREL 1382
Query: 228 KSKIGFVTQDDVLF---------PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ + + QD VLF P L +AA L L + E ID
Sbjct: 1383 RRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAA-LELVGLRERVASESEGID----- 1436
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS-LLFLDEPTSGLDSTTAL-RIVQ 336
R + GGS S G+R+ +C+ ++ S + +DE T+ +D AL R +Q
Sbjct: 1437 --SRVLE---GGS---NYSVGQRQLMCMARALLKKGSGFILMDEATANIDP--ALDRQIQ 1486
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFH---KFDKLILLGKGSLLYFGKASEAMAYFSSI 390
A + TV+T H RL H ++DK+I++ G++ G E + SI
Sbjct: 1487 ATVMSAFSAYTVITIAH----RL-HTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSI 1538
|
Length = 1560 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 8e-06
Identities = 44/201 (21%), Positives = 69/201 (34%), Gaps = 64/201 (31%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241
PGEV+ ++GP GSGKTTL L R + P GG I +
Sbjct: 1 PGEVILIVGPPGSGKTTLARAL-ARELGPPGGGVIYIDG--------------------- 38
Query: 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301
E + L +L + +K + ++ L L +
Sbjct: 39 ------EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL--------------- 77
Query: 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM------LQDIAEAGKTVVTTIHQP 355
P +L LDE TS LD+ ++ + L +E TV+ T +
Sbjct: 78 -----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDE 126
Query: 356 ----SSRLFHKFDKLILLGKG 372
+ L +FD+ I+L
Sbjct: 127 KDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 9e-06
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KS 226
+I + ++ G+ A +G SG GK+T+L L+ RL +PT G I + H K
Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE-RLYDPTEGDIIINDSHNLKDINLKW 457
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYA 253
+SKIG V+QD +LF + ++K + Y+
Sbjct: 458 WRSKIGVVSQDPLLFSN-SIKNNIKYS 483
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 42/245 (17%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
LNGIT S+ G ++A++G G GK++LL+ L + + V G + +K +
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVH---------MKGSVA 702
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-TMIGGS 291
+V Q + +++E + + L Q+ A ++ +L + D T IG
Sbjct: 703 YVPQ-QAWIQNDSLRENILFGKALNEK----YYQQVLEACALLPDLEILPSGDRTEIGEK 757
Query: 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-------MLQDIAEA 344
V +SGG+++RV + + N + D+P S +D+ I + +L
Sbjct: 758 GV-NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL-----K 811
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFL 404
KT + H S + D +I++ G + G E + + AEFL
Sbjct: 812 NKTRILVTHGIS--YLPQVDVIIVMSGGKISEMGSYQELLQRDGAF----------AEFL 859
Query: 405 LDLAN 409
A
Sbjct: 860 RTYAP 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 26/234 (11%)
Query: 180 VNPGEVLALMGPSGSGKTTLL-------NLLSGRLMEPTVG--GSITYNDHPYSKSLKSK 230
+ E+ +GPSG GK+T+L +L+ G E V G Y ++
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 231 IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290
IG V Q F +++ + + + LRL N ++ + + +D +
Sbjct: 91 IGMVFQQPNPFS-MSIFDNVAFG--LRL-NRYKGDLGDRVKHALQGAALWDEVKDKLKVS 146
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT 350
+SGG+++R+CI I P +L LDEP S LD R+ +++ ++ + +
Sbjct: 147 GL--SLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA--MAYFSSIGCSPQIAMNPAE 402
T H + I + + + S+ Y +G + QI NP E
Sbjct: 205 T---------HNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPRE 249
|
Length = 261 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 4e-05
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLL----SGRLMEPTVGGSITYNDHPYS-----KSLKS 229
S+ GE+L + G G+G+T L+ L GR G I + P +++
Sbjct: 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWE-----GEIFIDGKPVKIRNPQQAIAQ 338
Query: 230 KIGFVTQD---DVLFPHLTVKETLTYAALLRL--PNTLTKQQKEKRAIDVINELGLERCQ 284
I V +D D + P + V + +T AAL R + + + K ++ I L + +
Sbjct: 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-KTA 397
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ + +SGG +++ + +++NP +L LDEPT G+D I +++ + +
Sbjct: 398 SPELA---IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ 454
Query: 345 GKTVV 349
G ++
Sbjct: 455 GVAII 459
|
Length = 506 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 45/195 (23%), Positives = 86/195 (44%), Gaps = 25/195 (12%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKT-TLLNLLSGRLMEPTV---GGSI 216
L+ + + +++G++ ++ G VLAL+G SGSGK+ T L ++ V G +
Sbjct: 7 LRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALG--ILPAGVRQTAGRV 64
Query: 217 TYNDHPYS-KSLKSK-IGFVTQD--DVLFPHLT----VKETLTYAALLRLPNTLTKQQKE 268
+ P + +L+ + I + Q+ P T +ET AL + + +
Sbjct: 65 LLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETC--LALGKPAD-------D 115
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
+ +GLE + + +SGG +R+ I ++ + DEPT+ LD
Sbjct: 116 ATLTAALEAVGLE--NAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDV 173
Query: 329 TTALRIVQMLQDIAE 343
RI+ +L+ I +
Sbjct: 174 VAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 9e-05
Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 38/214 (17%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSL---K 228
+ I ++ GE++ L+G +GSGK+TL LL+G L +P G I + P S + L +
Sbjct: 339 VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTG-LYQPQSGE-ILLDGKPVSAEQLEDYR 396
Query: 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT-- 286
V D LF L E +A + E L+R +
Sbjct: 397 KLFSAVFSDYHLFDQLL--------------------GPEGKASPQLIEKWLQRLELAHK 436
Query: 287 --MIGGSFVR-GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQD 340
+ G F +S G++KR+ + ++ +L LDE + D A R +L
Sbjct: 437 TSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA--DQDPAFRREFYQVLLPL 494
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374
+ E GKT+ H F D+L+ + G L
Sbjct: 495 LKEQGKTIFAISH--DDHYFIHADRLLEMRNGQL 526
|
Length = 546 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 53/209 (25%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 161 LKGMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVG 213
++G+T + + +L ++ SV G+ + L+G +GSGK+TLL+ L RL+ E +
Sbjct: 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLSTEGEIQID 1278
Query: 214 GSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID 273
G +++N K+ G + Q +F K Y Q ++
Sbjct: 1279 G-VSWNSVTLQTWRKA-FGVIPQKVFIFSGTFRKNLDPYE-----------QWSDEEIWK 1325
Query: 274 VINELGL----ERCQD----TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
V E+GL E+ D ++ G +V +S G ++ +C+ I+ +L LDEP++
Sbjct: 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYV--LSNGHKQLMCLARSILSKAKILLLDEPSAH 1383
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354
LD T L+I++ + + TV+ + H+
Sbjct: 1384 LDPVT-LQIIRKTLKQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 32/117 (27%), Positives = 61/117 (52%), Gaps = 8/117 (6%)
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
+++RAI++++ +G++ +D M SF ++ GE ++V I + P LL DEPT+ +
Sbjct: 132 RKRRAIELLHRVGIKDHKDAM--RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAM 189
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
+ TT +I ++L + + T + I L DK+ ++LY G+ E
Sbjct: 190 EPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKI------NVLYCGQTVET 240
|
Length = 330 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 21/151 (13%)
Query: 235 TQDDVLFPHLTV----------KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+DV F ++ K T+ A L Q +R V + G
Sbjct: 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGL---ALGGAQSATRRRSGV--KAGCIVAA 66
Query: 285 DTMIGGSFVRGVSGGERKRVCI----GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ +SGGE++ + + L LDE GLD + + + +
Sbjct: 67 VSAELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE 126
Query: 341 IAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371
G V+ H P L DKLI + K
Sbjct: 127 HLVKGAQVIVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 21/208 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232
L I + G+++ ++G +G GK+TL L G L P G I + S
Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG-LYIPQ-EGEILLDGAAVSAD------ 409
Query: 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-KRAIDVINELGLERCQDTMIGG- 290
++DD + L + L + A + L + GG
Sbjct: 410 --SRDD--YRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGF 465
Query: 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV---QMLQDIAEAGKT 347
S +S G++KR+ + + + +L DE + D A + ++L D+ GKT
Sbjct: 466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAA--DQDPAFKRFFYEELLPDLKRQGKT 523
Query: 348 VVTTIHQPSSRLFHKFDKLILLGKGSLL 375
++ H + F D++I L G ++
Sbjct: 524 IIIISH--DDQYFELADQIIKLAAGCIV 549
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG 213
+ K ++ + V G+ +AL+GP+G GKTTLL L+ G+L + G
Sbjct: 330 DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSG 374
|
Length = 635 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 6e-04
Identities = 58/243 (23%), Positives = 111/243 (45%), Gaps = 26/243 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+KF DV + +L+G++ V+P E + ++G +G+GK+++LN L R++E
Sbjct: 1235 IKFEDVHLRY------RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVE 1287
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I +D +K L+ + + Q VLF TV+ + + + L +
Sbjct: 1288 -LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFSEHNDAD-LWEA 1344
Query: 266 QKEKRAIDVI--NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ DVI N GL+ + + G +F S G+R+ + + ++ +L LDE T
Sbjct: 1345 LERAHIKDVIDRNPFGLD-AEVSEGGENF----SVGQRQLLSLARALLRRSKILVLDEAT 1399
Query: 324 SGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ +D +R ++Q I E K+ + DK+++L G +L + E
Sbjct: 1400 ASVD----VRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQE 1455
Query: 383 AMA 385
++
Sbjct: 1456 LLS 1458
|
Length = 1495 |
| >gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258 | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.001
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRL 207
G+ L G SG GK+TLLN L L
Sbjct: 35 GKTSVLAGQSGVGKSTLLNALLPEL 59
|
Length = 161 |
| >gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRL 207
G+ L+G SG GK+TLLN L L
Sbjct: 85 GKTSVLVGQSGVGKSTLLNALLPEL 109
|
YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 297 SGGERKRVCIGNEIIINPS----LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI 352
SGGE +R+ + E+ S L LDEPT+GL +++++LQ + + G TVV
Sbjct: 171 SGGEAQRIKLAKELS-KRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229
Query: 353 HQ 354
H
Sbjct: 230 HN 231
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 292 FVRGVSGGERKRVCIGNEII---INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
++G+S G ++ + + ++ SLL +DEP +GL ++V++L++++E G +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245
Query: 349 VTTIHQPS 356
+ T H P
Sbjct: 246 IFTTHSPL 253
|
Length = 256 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 41/186 (22%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSK 230
I+ SV GE++ L G G+G++ L+ LL G G + + P ++++
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYG--ATRRTAGQVYLDGKPIDIRSPRDAIRAG 329
Query: 231 IGFVTQD---DVLFPHLTVKETLTYAA---LLRLPNTLTKQQKEKRAIDVINELGLE-RC 283
I +D + + P +V + + +A LR + + + + A I L ++
Sbjct: 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS 389
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
++ +I +SGG +++ +G + + ++ LDEPT G+D I ++ ++A
Sbjct: 390 REQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 344 AGKTVV 349
G V+
Sbjct: 445 QGVAVL 450
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.003
Identities = 47/178 (26%), Positives = 75/178 (42%), Gaps = 64/178 (35%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD- 237
S+ PG ++ ++GP+G+GK+TL +++G+ E G+I + K+ +V Q
Sbjct: 346 SLPPGGIVGIIGPNGAGKSTLFKMITGQ--EQPDSGTIKIGE-------TVKLAYVDQSR 396
Query: 238 DVLFPHLTVKETLTYAA-LLRLPNTLTK--------------QQKEKRAIDVINELGLER 282
D L P+ TV E ++ ++++ N QQK
Sbjct: 397 DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQK--------------- 441
Query: 283 CQDTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALR 333
V +SGGER R+ + GN +L LDEPT+ LD T LR
Sbjct: 442 ---------KVGVLSGGERNRLHLAKTLKQGGN-------VLLLDEPTNDLDVET-LR 482
|
Length = 556 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 26/156 (16%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245
+A++GP+G GK+T+L L+SG L +P+ G +S K ++ +Q V L+
Sbjct: 538 IAMVGPNGIGKSTILKLISGEL-QPSSGTVF--------RSAKVRMAVFSQHHVDGLDLS 588
Query: 246 VKETLTYAALLRLPNTLTKQQKEKR---AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302
L P +QK + + V L L+ + +SGG++
Sbjct: 589 SNPLLYMMRC--FPGVP--EQKLRAHLGSFGVTGNLALQP----------MYTLSGGQKS 634
Query: 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
RV P +L LDEP++ LD ++Q L
Sbjct: 635 RVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL 670
|
Length = 718 |
| >gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206
S+ + + L+ + ++ G+ +AL+G SG GK+TL+N L G
Sbjct: 177 VSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGE 218
|
Length = 356 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 38.3 bits (89), Expect = 0.004
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 353
+SGGE +RV I ++ N + DEP++ LD L + ++ ++E G KT + H
Sbjct: 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEH 130
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 640 | |||
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.97 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.97 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.97 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.96 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.93 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.93 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.93 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.93 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.91 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.91 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.89 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.88 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.88 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.87 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.84 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.84 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.82 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.81 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.79 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.79 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.79 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.79 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.79 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.78 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.78 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.76 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.73 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.72 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.72 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.72 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.71 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.66 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.64 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.6 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.56 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.49 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.48 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.45 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.43 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.42 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.41 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.39 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.36 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.31 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.31 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.29 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.29 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.26 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.25 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.25 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.24 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.2 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.16 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.15 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.15 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.14 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.13 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.12 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.09 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.05 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.05 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.04 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.02 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.02 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.01 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.98 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.95 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.94 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.91 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.88 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.82 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.8 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.79 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.77 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.76 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.73 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.6 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.57 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 98.56 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.54 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.54 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.52 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.51 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.51 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.48 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.44 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.4 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.4 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.33 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.29 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.27 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.25 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.25 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 98.16 | |
| PRK13873 | 811 | conjugal transfer ATPase TrbE; Provisional | 98.16 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.1 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.09 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.05 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.03 | |
| PRK09270 | 229 | nucleoside triphosphate hydrolase domain-containin | 98.03 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.02 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.0 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.98 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.98 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.97 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.96 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 97.94 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 97.93 | |
| TIGR00554 | 290 | panK_bact pantothenate kinase, bacterial type. Sho | 97.93 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.93 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.91 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 97.91 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.88 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 97.88 | |
| PRK13764 | 602 | ATPase; Provisional | 97.88 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.87 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.83 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.8 |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-86 Score=756.80 Aligned_cols=472 Identities=50% Similarity=0.888 Sum_probs=390.8
Q ss_pred CeeEEEEeEEEEEeeccc---------------------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 147 PIYLKFTDVTYKVILKGM---------------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~---------------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+..++|.|++|+....+. ...+++.+|+|||+++++||++||+||||||||||||+|+|
T Consensus 37 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG 116 (659)
T PLN03211 37 PITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 (659)
T ss_pred ceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhC
Confidence 568999999998753320 01135679999999999999999999999999999999999
Q ss_pred CCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc
Q 006571 206 RLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285 (640)
Q Consensus 206 ~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 285 (640)
+......+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...++++++++++++++.+||.++.|
T Consensus 117 ~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 196 (659)
T PLN03211 117 RIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN 196 (659)
T ss_pred CCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcC
Confidence 76422248999999999866666789999999999999999999999887766655566677788999999999999999
Q ss_pred ccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCE
Q 006571 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 286 t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~ 365 (640)
|.+|+..+++||||||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++.++||+
T Consensus 197 t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 197 TIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred ceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce
Confidence 99999889999999999999999999999999999999999999999999999999988999999999998778899999
Q ss_pred EEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHH
Q 006571 366 LILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVH 445 (640)
Q Consensus 366 i~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (640)
|++|++|++++.|+++++.+||+++|++||.+.|||||++++++.+........ .+ . ....
T Consensus 277 iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~----------~~------~---~~~~ 337 (659)
T PLN03211 277 VLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSE----------RE------K---PNVK 337 (659)
T ss_pred EEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccc----------cc------c---chHH
Confidence 999999999999999999999999999999999999999999875421100000 00 0 0011
Q ss_pred HHHHHHHHHHHHHHHHhhh--c-CCCCCcHHH---hhhc-CCCCCCcCCCHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 006571 446 EYLVEAYETRVAENEKKKL--M-APIPLDEEI---KAKV-SSPKRNWGASWIQQYTILFRRGIKEHRHDYFSWLRITQVL 518 (640)
Q Consensus 446 ~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~---~~~~-~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 518 (640)
+.+.+.|++.......... . ......... .... ...+..+..+||+|+.+|++|+++++|++.+.++|+++.+
T Consensus 338 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i 417 (659)
T PLN03211 338 QSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI 417 (659)
T ss_pred HHHHHHHHhhccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 1222333221110000000 0 000000000 0000 0112235678999999999999999999988889999999
Q ss_pred HHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHH
Q 006571 519 ATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLN 598 (640)
Q Consensus 519 ~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~ 598 (640)
++|+++|++||+++ +.++++|.|++||+++++++.+++.++..|++||+||+||+.+|+|++++|++|++++|+|+.
T Consensus 418 ~~~ll~G~lf~~~~---~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~ 494 (659)
T PLN03211 418 AAALLAGLMWWHSD---FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPME 494 (659)
T ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999984 578999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 006571 599 LVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 599 ~i~~~if~~i~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~l~ 640 (640)
++.+++|++|+|||+||++++.+||+|++++++..+++++++
T Consensus 495 ~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g 536 (659)
T PLN03211 495 LILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536 (659)
T ss_pred HHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999873
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-86 Score=750.95 Aligned_cols=461 Identities=45% Similarity=0.772 Sum_probs=395.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC-
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS- 224 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~- 224 (640)
+..++|+|+++..+.+. ...+++|+|||++++|||++||||||||||||||++|+||.... ..+|+|++||++..
T Consensus 23 ~~~~~~~~~~~~~~~~~---~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~ 99 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKS---KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS 99 (613)
T ss_pred cceeEEEEEEEEecCCC---CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch
Confidence 45799999999874321 14588999999999999999999999999999999999998653 57899999997664
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.+++.+|||.|||.++|++||+|+|.|.+.+|+|+.+++++++++|+++++++||.+|+||.+|+...+++||||||||
T Consensus 100 ~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRv 179 (613)
T KOG0061|consen 100 RSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRV 179 (613)
T ss_pred hhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHH
Confidence 46788899999999999999999999999999999988999999999999999999999999999988899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+++|||+.+++++||++++|.+|+++|+|+++++.
T Consensus 180 sia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 180 SIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELL 259 (613)
T ss_pred HHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 006571 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (640)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (640)
+||+++|++||.+.||+||++++++.+ .. ..+.....+..... ..... .....+... .+. ...
T Consensus 260 ~ff~~~G~~~P~~~Npadf~l~l~s~~-~~---~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~-~~~--------~~~ 322 (613)
T KOG0061|consen 260 EFFSSLGFPCPELENPADFLLDLLSVD-SG---TRELEEAVRIAKLI---NKFSQ-TDNLKKTLE-ALE--------KSL 322 (613)
T ss_pred HHHHhCCCCCCCcCChHHHHHHHHccC-CC---chhHHhHHHHHHHh---hhccc-cchhhhhHH-HHh--------hhc
Confidence 999999999999999999999998754 00 00000000000000 00000 000000000 000 000
Q ss_pred cCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006571 465 MAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQA 543 (640)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~ 543 (640)
.... ........+||.|+++|++|.+++ +|++.+.+.|+++.+.+|+++|++||+++. ++++++++.
T Consensus 323 ~~~~-----------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~-~~~~~~~~~ 390 (613)
T KOG0061|consen 323 STSK-----------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN-DAKGIQNRL 390 (613)
T ss_pred cccc-----------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHH
Confidence 0000 000111689999999999999997 688888999999999999999999999965 578888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHH
Q 006571 544 GLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFF 623 (640)
Q Consensus 544 g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F~ 623 (640)
|++||++.++.|.++++++..|++||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+||++++.+|+
T Consensus 391 g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~ 470 (613)
T KOG0061|consen 391 GLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFL 470 (613)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHH
Confidence 99999999998999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 006571 624 LSMLTVFLSIVAAQAL 639 (640)
Q Consensus 624 ~f~l~~~l~~~~~~~l 639 (640)
+|++++++..++++++
T Consensus 471 ~~~l~~~~~~~~a~s~ 486 (613)
T KOG0061|consen 471 YFLLIILLSSLVAESL 486 (613)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999886
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=712.05 Aligned_cols=467 Identities=35% Similarity=0.578 Sum_probs=385.7
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC-h
Q 006571 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS-K 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~-~ 225 (640)
.++|.++. +++... +++.+++++|+|+|++++|||++||+|||||||||||++|+|+.... ..+|+|.+||.++. .
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~ 95 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK 95 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH
Confidence 45666665 432211 11234678999999999999999999999999999999999976421 24799999999986 3
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc-CCcCCHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF-VRGVSGGERKRV 304 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~-~~~LSGGqrqRv 304 (640)
.+++.+|||+|+|.+++.+||+|||.|++.++.+...++++++++++++++.+||.++.||.+|+.. .++|||||||||
T Consensus 96 ~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRv 175 (617)
T TIGR00955 96 EMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRL 175 (617)
T ss_pred HHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHH
Confidence 5678899999999999999999999999988887767777888899999999999999999999753 678999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||++|+.+|+++||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++|+++|.|+++++.
T Consensus 176 sia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 176 AFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred HHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999999889999999999988889999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHhhh
Q 006571 385 AYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEKKKL 464 (640)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 464 (640)
+||+++|++||.+.||+||++++++.+..... + .....+.+.+.|.+.....+....
T Consensus 256 ~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~---~--------------------~~~~~~~~~~~~~~s~~~~~~~~~ 312 (617)
T TIGR00955 256 PFFSDLGHPCPENYNPADFYVQVLAVIPGSEN---E--------------------SRERIEKICDSFAVSDIGRDMLVN 312 (617)
T ss_pred HHHHHcCCCCCCCCChHHHHHHHhhcCccccc---c--------------------hHHHHHHHHHHHhcchhhHHHHHH
Confidence 99999999999999999999999764321100 0 000011112222211000000000
Q ss_pred cC-CCCCcHHH-hhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHH
Q 006571 465 MA-PIPLDEEI-KAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLED 541 (640)
Q Consensus 465 ~~-~~~~~~~~-~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~ 541 (640)
.. ........ +.........+..+||+|+.+|++|+++. +|++.+.++|+++.+++|+++|++||+++. ++.++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~-~~~~~~~ 391 (617)
T TIGR00955 313 TNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL-TQKGVQN 391 (617)
T ss_pred hhhhhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHH
Confidence 00 00000000 00000122356789999999999999986 788888899999999999999999999975 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHH
Q 006571 542 QAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGP 621 (640)
Q Consensus 542 ~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~ 621 (640)
+.|++|+++++++|.+++.++..|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++.+
T Consensus 392 ~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~ 471 (617)
T TIGR00955 392 INGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATH 471 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHH
Confidence 99999999998888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 006571 622 FFLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 622 F~~f~l~~~l~~~~~~~l~ 640 (640)
||+|++++++..+++++++
T Consensus 472 f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 472 FLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888763
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-78 Score=740.54 Aligned_cols=466 Identities=29% Similarity=0.499 Sum_probs=385.1
Q ss_pred CCCeeEEEEeEEEEEeecccc-----ccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC
Q 006571 145 TLPIYLKFTDVTYKVILKGMT-----SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (640)
Q Consensus 145 ~~~~~l~~~~vs~~~~~~~~~-----~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~ 219 (640)
..|..+.|+||+|.++.+... ..+.+.+|+|||++++||+++||+||||||||||||+|+|+......+|+|.+|
T Consensus 863 ~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~in 942 (1470)
T PLN03140 863 FTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRIS 942 (1470)
T ss_pred CCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEEC
Confidence 345579999999998543210 113457999999999999999999999999999999999986433468999999
Q ss_pred CEeCCh-hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 220 DHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 220 G~~~~~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
|.+..+ .+++.+|||+|+|.+++.+||+|||.|++.++.+...+++++.++++++++.+||.++.|+.+|+..+++|||
T Consensus 943 G~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSg 1022 (1470)
T PLN03140 943 GFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLST 1022 (1470)
T ss_pred CccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCH
Confidence 998753 4567899999999999999999999999887776656667777889999999999999999999877789999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv~~ 377 (640)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|+
T Consensus 1023 GerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~ 1102 (1470)
T PLN03140 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYS 1102 (1470)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999999999999999999988999999999998778899999999996 899999
Q ss_pred cCh----HHHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHH
Q 006571 378 GKA----SEAMAYFSSI-GC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEA 451 (640)
Q Consensus 378 G~~----~~~~~~f~~~-g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 451 (640)
|++ +++.+||+++ |+ +||++.|||||++++++.+... .. ..+..+.+..+ +.
T Consensus 1103 G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~---------~~--~~d~~~~~~~s-----------~~ 1160 (1470)
T PLN03140 1103 GPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV---------KL--GIDFAEHYKSS-----------SL 1160 (1470)
T ss_pred CCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc---------cc--cchHHHHHhcc-----------HH
Confidence 996 6899999998 66 4999999999999987532110 00 00000001000 01
Q ss_pred HHHHHHHHHHhhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcC
Q 006571 452 YETRVAENEKKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQ 530 (640)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~ 530 (640)
|.+..... .....+.+. .........+..+||+|+.+|++|+++. ||++.+.+.|+++.+++|+++|++||+
T Consensus 1161 ~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~ 1233 (1470)
T PLN03140 1161 YQRNKALV--KELSTPPPG-----ASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWK 1233 (1470)
T ss_pred HHHHHHHH--HHhccCCCC-----ccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 11100000 011111100 0011123467899999999999999985 899999999999999999999999999
Q ss_pred CCCCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006571 531 SDSKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVI 608 (640)
Q Consensus 531 ~~~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i 608 (640)
++++. ..+++++.|++|++++++++..+...++.|+.||+||+||+++|+|++++|++|++++|+|+.++.+++|.+|
T Consensus 1234 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i 1313 (1470)
T PLN03140 1234 VGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLI 1313 (1470)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 97642 3678899999999999888877777788999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCChHHHHHHHHHHHHHHHHHHhc
Q 006571 609 VYFMAGLRMGAGPFFLSMLTVFLSIVAAQAL 639 (640)
Q Consensus 609 ~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~l 639 (640)
+|||+||++++.+||+|+++++++.+++.++
T Consensus 1314 ~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~ 1344 (1470)
T PLN03140 1314 VYAMVAFEWTAAKFFWFYFISFFSFLYFTYY 1344 (1470)
T ss_pred HHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888765
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-78 Score=738.24 Aligned_cols=452 Identities=29% Similarity=0.473 Sum_probs=371.0
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC--CCcccEEEECCEeCCh---hccCcEEEEccCCCCCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~--~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~ 243 (640)
.+++|+|||+++++||+++|+||||||||||||+|+|+... .+.+|+|.+||+++.+ ..++.++||+|++.+++.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCC
Confidence 46799999999999999999999999999999999997531 2468999999998742 346679999999999999
Q ss_pred CCHHHHHHHHHhccCCC----CccHHHHHHH-HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 244 LTVKETLTYAALLRLPN----TLTKQQKEKR-AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
+||+|||.|++.++.|. ..++++..++ ++++++.+||.++.|+.+|+..+++|||||||||+||++|+.+|+|+|
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll 232 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC 232 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence 99999999998876543 2344444444 467899999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCC
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIA 397 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~ 397 (640)
|||||+|||+.++.++++.|++++++ |+|||+++|||+.+++++||+|++|++|+++++|+++++.+||+++|++||++
T Consensus 233 lDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~ 312 (1394)
T TIGR00956 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDR 312 (1394)
T ss_pred EeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999874 99999999999888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHH------HHHHHh-hhcCCCCC
Q 006571 398 MNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRV------AENEKK-KLMAPIPL 470 (640)
Q Consensus 398 ~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~~-~~~~~~~~ 470 (640)
.||+||++++++.+.+... .+.++..+ ... +.+.+.|+++. ...+.. ........
T Consensus 313 ~n~aDfl~~~~~~~~~~~~--~~~e~~~~------------~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 374 (1394)
T TIGR00956 313 QTTADFLTSLTSPAERQIK--PGYEKKVP------------RTP----QEFETYWRNSPEYAQLMKEIDEYLDRCSESDT 374 (1394)
T ss_pred CChHHHHHhccChhhhhcc--ccccccCC------------CCH----HHHHHHHHcCHHHHHHHHHHHHHhhhccchhh
Confidence 9999999999865432211 00000000 001 11122221110 000000 00000000
Q ss_pred c-------HHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 006571 471 D-------EEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQ 542 (640)
Q Consensus 471 ~-------~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~ 542 (640)
. ...+.+.......+..|||+|+.+|++|++++ +|++.+.++|+++.+++|+++|++||+++. ++.++++|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~-~~~~~~~r 453 (1394)
T TIGR00956 375 KEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK-NTSDFYSR 453 (1394)
T ss_pred HHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC-CchhHHHH
Confidence 0 00001112233467899999999999999996 788888899999999999999999999975 56899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHH
Q 006571 543 AGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPF 622 (640)
Q Consensus 543 ~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F 622 (640)
.|++||++++.+|.++ ..+..++.||+||+||+.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++|
T Consensus 454 ~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~F 532 (1394)
T TIGR00956 454 GGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRF 532 (1394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHH
Confidence 9999999999888874 557777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 006571 623 FLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 623 ~~f~l~~~l~~~~~~~l~ 640 (640)
|+|+++++++.++++++|
T Consensus 533 f~f~l~~~l~~~~~~~~~ 550 (1394)
T TIGR00956 533 FFYLLILFICTLAMSHLF 550 (1394)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-76 Score=722.52 Aligned_cols=458 Identities=32% Similarity=0.538 Sum_probs=376.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~~ 227 (640)
.++++||+|+|+.+ .+++.+|+|||++++|||++||+||||||||||||+|+|+.... +.+|+|.+||+++...+
T Consensus 759 ~l~~~nl~~~~~~~----~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIK----KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSF 834 (1394)
T ss_pred eEEEEeeEEEecCC----CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhh
Confidence 58999999998421 23568999999999999999999999999999999999976421 35799999999987667
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.+|||+|++.+++.+||+|||.|++.++.|...+++++.++++++++.+||.++.|+.+|+.. .+|||||||||+||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl~Ia 913 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLTIG 913 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHHHHH
Confidence 88999999999999999999999999988776656677778889999999999999999997543 48999999999999
Q ss_pred HHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC-eEEEecCh----H
Q 006571 308 NEIIINPS-LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG-SLLYFGKA----S 381 (640)
Q Consensus 308 ~aL~~~P~-iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G-~iv~~G~~----~ 381 (640)
++|+.+|+ ||||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|++ +
T Consensus 914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~ 993 (1394)
T TIGR00956 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSH 993 (1394)
T ss_pred HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccc
Confidence 99999997 999999999999999999999999998889999999999987677889999999997 99999997 6
Q ss_pred HHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHH
Q 006571 382 EAMAYFSSIGC-SPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENE 460 (640)
Q Consensus 382 ~~~~~f~~~g~-~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 460 (640)
++.+||+++|+ +||++.|||||++|+++....... ..+ ..+.+..++..+.. .+....
T Consensus 994 ~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~----~~~-------~~~~~~~s~~~~~~--------~~~~~~-- 1052 (1394)
T TIGR00956 994 TIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHA----NQD-------YHEVWRNSSEYQAV--------KNELDR-- 1052 (1394)
T ss_pred hHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccch----hcc-------HHHHHhcCHHHHHH--------HHHHHH--
Confidence 78999999996 999999999999999764321100 000 00001111000000 000000
Q ss_pred HhhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhH
Q 006571 461 KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGL 539 (640)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~ 539 (640)
...+...... . ........+.+|||+|+++|++|++++ +|++.+.+.|+++.+++|+++|++||++++ ++.++
T Consensus 1053 ---~~~~~~~~~~-~-~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~-~~~~i 1126 (1394)
T TIGR00956 1053 ---LEAELSKAED-D-NDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT-SLQGL 1126 (1394)
T ss_pred ---hhcccccCcc-c-cccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC-CHHHH
Confidence 0000000000 0 001122357899999999999999996 899999999999999999999999999976 57899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCC
Q 006571 540 EDQAGLLFFIAVFWSFFPIFTAIFTFPQERAML-SKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMG 618 (640)
Q Consensus 540 ~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~-~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~ 618 (640)
+++.|++|++++++.+. ....++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+||+++
T Consensus 1127 ~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1127 QNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 99999999988776554 345677888888886 9999999999999999999999999999999999999999999988
Q ss_pred hHH-------HHHHHHHHHHHHHHHHhc
Q 006571 619 AGP-------FFLSMLTVFLSIVAAQAL 639 (640)
Q Consensus 619 ~~~-------F~~f~l~~~l~~~~~~~l 639 (640)
+.. ||+|++++++..++++++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~ 1233 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTL 1233 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHH
Confidence 866 999999999988887765
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-78 Score=698.88 Aligned_cols=454 Identities=31% Similarity=0.537 Sum_probs=381.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhcc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLK 228 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-~~~~ 228 (640)
..|+|+.|..+.+ ++.+++|+|||+.++||.++||||+||||||||||+|+||...+..+|+|++||.|.. +.++
T Consensus 788 ~~w~dl~~~~~~q----G~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~ 863 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQ----GGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFA 863 (1391)
T ss_pred EEEEeCCcccccc----ccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhc
Confidence 3444444444322 3567899999999999999999999999999999999999876678999999999998 6789
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|.+|||.|+|.|.+.+||+|.|.|+|.+|.|..++.+++.+.|+++++.++|++++|..||... +|||.+||||++||.
T Consensus 864 R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgV 942 (1391)
T KOG0065|consen 864 RVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGV 942 (1391)
T ss_pred cccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred HHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEEEecChH----H
Q 006571 309 EIIINP-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFGKAS----E 382 (640)
Q Consensus 309 aL~~~P-~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv~~G~~~----~ 382 (640)
+|+.|| .||||||||||||+.++..|++.+|++++.|+||+|++|||+.++++.||++++|++ |+.||.|+.. .
T Consensus 943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~ 1022 (1391)
T KOG0065|consen 943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSK 1022 (1391)
T ss_pred EEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHH
Confidence 999999 899999999999999999999999999999999999999999999999999999986 7999999874 5
Q ss_pred HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHHHHHH
Q 006571 383 AMAYFSSIG-CSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVAENEK 461 (640)
Q Consensus 383 ~~~~f~~~g-~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 461 (640)
+++||+++| .+||...|||||++|+++..... . ...+.++.+..++. |++..+. -
T Consensus 1023 li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~---------~--~~~D~a~~w~~S~e-----------~k~~~e~--v 1078 (1391)
T KOG0065|consen 1023 LIEYFESIGGVKCISDENPAEWMLEVIGAGAEA---------S--LSVDFAEIWKNSEE-----------YKRNKEL--V 1078 (1391)
T ss_pred HHHHHHhcCCccCCCCCChHHHHHhhccccccc---------c--cCccHHHHHhccHH-----------HHHHHHH--H
Confidence 778999997 89998889999999997643111 0 00111111211111 1111010 1
Q ss_pred hhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH
Q 006571 462 KKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIK-EHRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLE 540 (640)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~-~~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~ 540 (640)
+.+..+.+. .......+++|..|+|.|++.+++|++. .||+|.+.++|++..++.|+++|+.||+.+ .+..+++
T Consensus 1079 ~~l~~~~~~----~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g-~~~q~lq 1153 (1391)
T KOG0065|consen 1079 KELSQPPPG----FSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG-HNVQGLQ 1153 (1391)
T ss_pred HHHhcCCcc----CCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC-CcHHHHH
Confidence 111122111 1222344567899999999999999997 599999999999999999999999999998 4789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChH
Q 006571 541 DQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAG 620 (640)
Q Consensus 541 ~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~ 620 (640)
|.+|++|+.+++.+-...-.....+..||.+++||+++|+||+.||++|.+++|+|+.++++++|.+|+|||+|+.+++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 99999999887754333223455667899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 006571 621 PFFLSMLTVFLSIVAAQ 637 (640)
Q Consensus 621 ~F~~f~l~~~l~~~~~~ 637 (640)
+|++|++.+++..+...
T Consensus 1234 ~~~~f~~~~~~f~lYf~ 1250 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFT 1250 (1391)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988888877766544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-76 Score=721.42 Aligned_cols=453 Identities=26% Similarity=0.439 Sum_probs=366.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChh-ccCcEEEEccCCCCCCCCCH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKS-LKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~-~~~~i~yV~Q~~~l~~~lTV 246 (640)
++.||+|||+.|+|||+++|+||||||||||||+|+|++... ..+|+|.+||+++.+. .++.++||+|+|.+++.+||
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV 256 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTV 256 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcH
Confidence 567999999999999999999999999999999999986421 2389999999988542 36789999999999999999
Q ss_pred HHHHHHHHhccCCC-------CccHHHH------------------------HHHHHHHHHHcCCCccccccccCccCCc
Q 006571 247 KETLTYAALLRLPN-------TLTKQQK------------------------EKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 247 ~Enl~~~~~~~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+|||.|++.++.+. ..+++++ +..++++++.+||++++||.+|+..+++
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 99999998765321 1112211 1135778999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.+++++||+|++|++|++
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 999999999999999999999999999999999999999999999986 5899999999998889999999999999999
Q ss_pred EEecChHHHHHHHHhcCCCCCCCCChHHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHH
Q 006571 375 LYFGKASEAMAYFSSIGCSPQIAMNPAEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYET 454 (640)
Q Consensus 375 v~~G~~~~~~~~f~~~g~~~~~~~npad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 454 (640)
+|+|+++++.+||+++|++||++.|||||++++++.+.... ... . ...|......+.+.++|++
T Consensus 417 vy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~--------~~~--~------~~~p~~~~~~~~~~~~~~~ 480 (1470)
T PLN03140 417 VYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQ--------YWA--D------RNKPYRYISVSEFAERFKS 480 (1470)
T ss_pred EEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhh--------hhh--c------cCCccccCCHHHHHHHHHh
Confidence 99999999999999999999999999999999986432110 000 0 0000000011223344433
Q ss_pred HHHHHH-HhhhcCCCCCcHHHhhhcCCCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCC
Q 006571 455 RVAENE-KKKLMAPIPLDEEIKAKVSSPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSD 532 (640)
Q Consensus 455 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~ 532 (640)
...... ..+...+ .+.....+.......|..++|.|+..|++|+++. +|++.+++.|+++.+++|+++|++||+++
T Consensus 481 s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~ 558 (1470)
T PLN03140 481 FHVGMQLENELSVP--FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTE 558 (1470)
T ss_pred cHHHHHHHHHHhhh--hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 211100 0000000 0000001111223458899999999999999986 78877888999999999999999999996
Q ss_pred CCC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 006571 533 SKS--PKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVY 610 (640)
Q Consensus 533 ~~~--~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y 610 (640)
.+. ..+.+.+.|++||++++++|.+ +..+..++.||+||+|||..++|++++|++|++++|+|+.++.+++|++|+|
T Consensus 559 ~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y 637 (1470)
T PLN03140 559 MHTRNEEDGALYIGALLFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITY 637 (1470)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 431 2345677899999988877655 5778899999999999999999999999999999999999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 006571 611 FMAGLRMGAGPFFLSMLTVFLSIVAAQALY 640 (640)
Q Consensus 611 ~m~gl~~~~~~F~~f~l~~~l~~~~~~~l~ 640 (640)
||+||++++++||+|+++++++.++++++|
T Consensus 638 ~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~ 667 (1470)
T PLN03140 638 YSIGFAPEASRFFKQLLLVFLIQQMAAGIF 667 (1470)
T ss_pred hhcCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-68 Score=614.54 Aligned_cols=453 Identities=33% Similarity=0.547 Sum_probs=373.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhc-cCcEEEEccCCCCCCCCCH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSL-KSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~~-~~~i~yV~Q~~~l~~~lTV 246 (640)
...+|+|+|+-++||+++.++||+||||||||++|+|.+..- ...|+|.+||.+.++.. ++.++|++|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 457999999999999999999999999999999999976542 23679999999986533 5779999999999999999
Q ss_pred HHHHHHHHhccCCCC----ccHHHHHH-HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006571 247 KETLTYAALLRLPNT----LTKQQKEK-RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 321 (640)
+|+|.|+++++.+.. +++.++.+ ..+.+++.+||++|+||.||+...|++||||||||+||.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 33333333 5678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHHhcCCCCCCCCCh
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIGCSPQIAMNP 400 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~~g~~~~~~~np 400 (640)
+|.|||+.++.++++.|+++++. +.|++++.|||+++++++||+|++|++|+++|+||.+++++||+++|+.||++.++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 99999999999999999999864 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCcCCCchhhhhhhcccccccccCCCCChhhHHHHHHHHHHHHHH-HHHHhhhcCCCCCcHHHhhhcC
Q 006571 401 AEFLLDLANGNLHDVSVPSELQDRVQTENSENDTANGKPTPAIVHEYLVEAYETRVA-ENEKKKLMAPIPLDEEIKAKVS 479 (640)
Q Consensus 401 ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 479 (640)
|||+.++++...... +-. .... ......+.+..++ +.+... .....+... +.+...+.+..
T Consensus 367 ADfLt~vts~k~~~~--~~~-------~~~~---~~~~~~~~ef~~~----~~~s~~~~~l~~~l~~--~~~~~k~~~~a 428 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQ--YWN-------KRSK---PYPYTSVSEFAEY----FLNSEDYAKLKKELSK--PYDKSKKHKAA 428 (1391)
T ss_pred HHHHHHhhcCccccc--ccc-------ccCC---CcccCCHHHHHHH----HhcchhhHHHHHHhcc--hhhhhhccchh
Confidence 999999987211100 000 0000 0000011222222 111100 000011111 11111122333
Q ss_pred CCCCCcCCCHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 006571 480 SPKRNWGASWIQQYTILFRRGIKE-HRHDYFSWLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPI 558 (640)
Q Consensus 480 ~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~ 558 (640)
.....|..++|.|++.|+.|.+.. .||..++..++++.+++|+|+|++||+.+-.+..+.+.+.|++||++++.+|.+
T Consensus 429 l~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~- 507 (1391)
T KOG0065|consen 429 LVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNG- 507 (1391)
T ss_pred hcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHh-
Confidence 456678999999999999999986 455556678999999999999999999973455678899999999999988776
Q ss_pred HHHHHHHHhhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHh
Q 006571 559 FTAIFTFPQERAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQA 638 (640)
Q Consensus 559 ~~~i~~~~~er~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~ 638 (640)
++.+....+.||||+|||...+|+++||.++.+++++|+.++..++|.+|+||++||.+++++||.++|+++++..++.+
T Consensus 508 laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~ 587 (1391)
T KOG0065|consen 508 LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSG 587 (1391)
T ss_pred HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 56787788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 006571 639 LY 640 (640)
Q Consensus 639 l~ 640 (640)
||
T Consensus 588 lF 589 (1391)
T KOG0065|consen 588 LF 589 (1391)
T ss_pred HH
Confidence 86
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-63 Score=548.17 Aligned_cols=356 Identities=25% Similarity=0.383 Sum_probs=298.4
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccc-eecchhch
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLK-LELDEVSS 87 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (640)
++.++.||+.|.++.+|+|.+++.+|||+|+++..|..+|.++++....++.|++.+++.+ +.++.+..+ ..+.-+++
T Consensus 314 klS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a~~~f-~~~~~~~~~~~~~siL~~ 392 (716)
T KOG0058|consen 314 KLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVAYGIF-FGSTNLLGNLAVLSILFY 392 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HhHHHHHHhHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999999999999999999999 555555554 45556789
Q ss_pred hhhHhhhhhhhhhhhhccccCCCCcccc----------------ccCCCCCCCCCccccccccCCCCCCCCCC-CCCeeE
Q 006571 88 GAALSRASSASLGLSFSFTGFTMPPDEI----------------ADSKPFSDDDIPEDIEAGTRERPKFQTEP-TLPIYL 150 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 150 (640)
|+.++..|.++.|.+.+|..|++..... +.++.|+..|..+.++.... ..| .....|
T Consensus 393 Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~G~------~~p~~~~G~I 466 (716)
T KOG0058|consen 393 GGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLTGT------LAPDHLQGVI 466 (716)
T ss_pred ccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCCCc------cccccccceE
Confidence 9999999999999999999988765533 23344444444433332211 011 234579
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
+|+||+|+|+ .+++.+||||+||+|+|||++|||||||+||||+.++|. |+|+| .+|+|.+||+|+++ .
T Consensus 467 eF~~VsFaYP-----~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~-rfY~P-tsG~IllDG~~i~~~~~~~ 539 (716)
T KOG0058|consen 467 EFEDVSFAYP-----TRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLL-RFYDP-TSGRILLDGVPISDINHKY 539 (716)
T ss_pred EEEEeeeecC-----CCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHH-HhcCC-CCCeEEECCeehhhcCHHH
Confidence 9999999985 346789999999999999999999999999999999999 78876 48999999999964 5
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+|++||+|.|||.||.. ||+|||.|+......+.+....+.+.+++++.. +++++||.||.+. ..||||||||+||
T Consensus 540 lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~--~p~gY~T~VGEkG-~qLSGGQKQRIAI 615 (716)
T KOG0058|consen 540 LRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFITN--FPDGYNTVVGEKG-SQLSGGQKQRIAI 615 (716)
T ss_pred HHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHh--CccccccccCCcc-ccccchHHHHHHH
Confidence 78999999999999975 999999998652111112223344556777764 5999999999754 5699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||++||.||||||.||+||++++..|.+.|.++.+ ++|||+|.|++++ .+.+|+|+++++|++++.|+|+|+++
T Consensus 616 ARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 616 ARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred HHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEEEEcCCeEEecccHHHHhh
Confidence 9999999999999999999999999999999998876 6999999999885 58899999999999999999999975
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=424.16 Aligned_cols=218 Identities=33% Similarity=0.578 Sum_probs=198.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++| ++..+|+|||++|++||+++|+|||||||||||+||+|. . .+++|+|.++|.++.
T Consensus 2 mi~i~~l~K~f--------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-E-~~~~G~I~i~g~~~~~~~~ 71 (240)
T COG1126 2 MIEIKNLSKSF--------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-E-EPDSGSITVDGEDVGDKKD 71 (240)
T ss_pred eEEEEeeeEEe--------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-c-CCCCceEEECCEeccchhh
Confidence 58999999999 577899999999999999999999999999999999973 3 356999999998763
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..+|+++|+|||+.+|||++||.||+.++...- ...++++.++++.++|+.+||.+.+|. ++.+||||||||
T Consensus 72 ~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~-----yP~qLSGGQqQR 144 (240)
T COG1126 72 ILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADA-----YPAQLSGGQQQR 144 (240)
T ss_pred HHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhh-----CccccCcHHHHH
Confidence 246899999999999999999999999976432 246788889999999999999998875 578999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+|||||+.+|+++++|||||+|||+...++++.+++|+++|.|.|++||+... +.+.+|||++|++|+|++.|+++++
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~G~iie~g~p~~~ 223 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQGKIIEEGPPEEF 223 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeCCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999999999999999764 6788999999999999999999887
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 224 f 224 (240)
T COG1126 224 F 224 (240)
T ss_pred h
Confidence 4
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=501.49 Aligned_cols=361 Identities=25% Similarity=0.345 Sum_probs=272.8
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
++++++.++.-+++-++|||++++.+||.+|+|+..+.++|++-+......+.+++...|...-....+-...-...+|+
T Consensus 196 ~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~~Wy 275 (1228)
T KOG0055|consen 196 SKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALAFWY 275 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56888889999999999999999999999999999999999999988888777666555544111222222334455678
Q ss_pred hhhHhhhhhhhhhhhhccccC----------------CCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGF----------------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|+.+...+....|.++.-... .+..+..++..++..-+-.+.++.... ... ........++
T Consensus 276 G~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~-~~~--~~~~~~g~ie 352 (1228)
T KOG0055|consen 276 GSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSK-GGR--VLSSIKGEIE 352 (1228)
T ss_pred HHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCCCcccc-cCC--cccccccceE
Confidence 877777654444443332211 222223333333332222222222210 010 1122345799
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~ 227 (640)
|+||+|+|+ .+++.+||+|+||.|++|+.+||||||||||||++++|. |+++|. +|+|++||.|+. +.+
T Consensus 353 f~nV~FsYP-----sRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~-RfydP~-~G~V~idG~di~~~~~~~l 425 (1228)
T KOG0055|consen 353 FRNVCFSYP-----SRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLA-RFYDPT-SGEVLIDGEDIRNLNLKWL 425 (1228)
T ss_pred EEEEEecCC-----CCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CceEEEcCccchhcchHHH
Confidence 999999985 345788999999999999999999999999999999999 577764 899999999986 367
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
|++||.|+|+|.||. .||+|||.|+......+.+.+..+.+.+++++.. |++.+||.+|.+.+. ||||||||+|||
T Consensus 426 r~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~--lp~g~~T~vge~g~q-LSGGQKQRIAIA 501 (1228)
T KOG0055|consen 426 RSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFILK--LPDGYDTLVGERGVQ-LSGGQKQRIAIA 501 (1228)
T ss_pred HhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHh--hHHhhcccccCCCCC-CChHHHHHHHHH
Confidence 999999999999996 5999999997422111111122233345566654 588999999987654 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||++||+|||||||||+||++++..+.+.|.+.. .|+|.|+++|++++ .+.+|+|++|++|+|++.|+|+|+++
T Consensus 502 Ralv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt--IrnaD~I~v~~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 502 RALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST--IRNADKIAVMEEGKIVEQGTHDELIA 576 (1228)
T ss_pred HHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh--hhccCEEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999999998865 49999999999885 46799999999999999999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=408.79 Aligned_cols=233 Identities=30% Similarity=0.573 Sum_probs=206.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+|+|||+.| +++.+++|+||+|++||+++++|||||||||+||+|.+ +.+| ++|+|++||+++..
T Consensus 1 MI~~~nvsk~y--------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINr-Liep-t~G~I~i~g~~i~~~d~ 70 (309)
T COG1125 1 MIEFENVSKRY--------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINR-LIEP-TSGEILIDGEDISDLDP 70 (309)
T ss_pred Cceeeeeehhc--------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhc-ccCC-CCceEEECCeecccCCH
Confidence 47999999998 46789999999999999999999999999999999995 5544 58999999999864
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
++|++||||-|+-.|||++||.|||.+...+. ..++++.+++++++++.+||+.. ...++++++|||||+|||
T Consensus 71 ~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~---~~~~RyP~eLSGGQQQRV 144 (309)
T COG1125 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPS---EYADRYPHELSGGQQQRV 144 (309)
T ss_pred HHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHH---HHhhcCchhcCcchhhHH
Confidence 68999999999999999999999999876653 46788899999999999999742 123467899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. ++++++|||++|++|+++..++|+++
T Consensus 145 Gv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~~P~~i 223 (309)
T COG1125 145 GVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYDTPDEI 223 (309)
T ss_pred HHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999865 999999999965 68899999999999999999999998
Q ss_pred HHHHHhcCCCCCCCCChH-HHHHHhhcCC
Q 006571 384 MAYFSSIGCSPQIAMNPA-EFLLDLANGN 411 (640)
Q Consensus 384 ~~~f~~~g~~~~~~~npa-d~~~~~~~~~ 411 (640)
+. ||+ ||+.+....+
T Consensus 224 l~-------------~Pan~FV~~f~g~~ 239 (309)
T COG1125 224 LA-------------NPANDFVEDFFGES 239 (309)
T ss_pred Hh-------------CccHHHHHHHhccc
Confidence 73 554 5666655443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-51 Score=415.72 Aligned_cols=222 Identities=28% Similarity=0.459 Sum_probs=199.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||++.|..+ ..+...+|+|||++|++||+++|+|.||||||||+++|.+ +.. |++|+|.+||+++..
T Consensus 1 mI~l~~vsK~~~~~---~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~-Le~-PtsG~v~v~G~di~~l~~ 75 (339)
T COG1135 1 MIELENVSKTFGQT---GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LER-PTSGSVFVDGQDLTALSE 75 (339)
T ss_pred CeEEEeeeeeeccC---CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhc-cCC-CCCceEEEcCEecccCCh
Confidence 48999999998432 1234579999999999999999999999999999999996 444 569999999988752
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..|++||++||++.|+...||.||+.|+..+. ..++++.++++.++++.+||++..+. ++.+||||||
T Consensus 76 ~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~-----yP~qLSGGQK 147 (339)
T COG1135 76 AELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADR-----YPAQLSGGQK 147 (339)
T ss_pred HHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhcc-----CchhcCcchh
Confidence 46889999999999999999999999998775 36789999999999999999987764 5789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|+|||+|||||+|||.+...|+++|+++.++ |.||+++||++. .+.++||||.+|++|++++.|+.
T Consensus 148 QRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 148 QRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999999765 999999999964 58889999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
.++.
T Consensus 227 ~~vF 230 (339)
T COG1135 227 SEVF 230 (339)
T ss_pred HHhh
Confidence 8875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=489.21 Aligned_cols=354 Identities=24% Similarity=0.359 Sum_probs=283.5
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+-+++.++...++...|.|..++.+||++++.+.--...|.+.+.+....+.++++-.|.-.-.+.+...-......++|
T Consensus 834 ~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G 913 (1228)
T KOG0055|consen 834 GFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYG 913 (1228)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566678899999999999999999999999998888888888777666666665555442223333333344444555
Q ss_pred hhHh-----------------hhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 89 AALS-----------------RASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 89 ~~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
+.++ .+++...+...++.+ +..++..++...|...|-.+.++...+ .....+.....|+
T Consensus 914 ~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~P-d~~ka~~Aa~~iF~i~dr~~~i~~~~~---~~~~~~~~~G~I~ 989 (1228)
T KOG0055|consen 914 ARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAP-DISKAKIAAGSIFEILDRKPTIDPDST---SGGKLPNVKGDIE 989 (1228)
T ss_pred HHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHHhcCCCCCCCCCC---CCCccccceeEEE
Confidence 5554 455778888888888 777777777777666654443433221 1111233456799
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|| .+++.+||+|+|++|++|+.+||||||||||||.+.+|. |+|+|. +|.|.+||.|+++ .+
T Consensus 990 ~~~V~F~YP-----sRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLe-RfYdp~-~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 990 FRNVSFAYP-----TRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE-RFYDPD-AGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred EeeeEeeCC-----CCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHH-HhcCCC-CCeEEECCcccccCCHHHH
Confidence 999999985 457889999999999999999999999999999999999 788764 8999999999863 68
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHH-----HHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|+++|.|.|+|.||.. |++|||.|+.. + .+.++ +.+.+++++. +|++++||.+|++. .+|||||||
T Consensus 1063 R~~i~lVsQEP~LF~~-TIrENI~YG~~----~-vs~~eIi~Aak~ANaH~FI~--sLP~GyDT~vGerG-~QLSGGQKQ 1133 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNG-TIRENIAYGSE----E-VSEEEIIEAAKLANAHNFIS--SLPQGYDTRVGERG-VQLSGGQKQ 1133 (1228)
T ss_pred HHhcceeccCchhhcc-cHHHHHhccCC----C-CCHHHHHHHHHHhhhHHHHh--cCcCcccCccCccc-CcCCchHHH
Confidence 9999999999999965 99999999821 1 33333 3445666664 67999999999765 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+||||||++||+||||||.||+||+++++.+.+.|.+.. .|+|.|+++|++++ .+.||.|+|+++|+|++.|+|++
T Consensus 1134 RIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST--IqnaD~I~Vi~~G~VvE~GtH~~ 1210 (1228)
T KOG0055|consen 1134 RIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST--IQNADVIAVLKNGKVVEQGTHDE 1210 (1228)
T ss_pred HHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh--hhcCCEEEEEECCEEEecccHHH
Confidence 9999999999999999999999999999999999999875 49999999999985 58899999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 1211 L~~ 1213 (1228)
T KOG0055|consen 1211 LLA 1213 (1228)
T ss_pred HHh
Confidence 986
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-52 Score=476.47 Aligned_cols=362 Identities=24% Similarity=0.336 Sum_probs=273.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++..+.-++..+...|.+.+.+|+++.+.++....+..++..+....+.+..--......-...+|.-..+.-++.|+
T Consensus 320 ~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~ 399 (709)
T COG2274 320 KTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGA 399 (709)
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677889999999999999999999999999998887777653333333333345555666777889999
Q ss_pred hHhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccC-CCCC-CCCCCCCCeeEEEEeEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTR-ERPK-FQTEPTLPIYLKFTDVTY 157 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~~~vs~ 157 (640)
.++..+..+.|.+++|..+.- |.......-. ....++.+.+..... +... ....+.....++|+||+|
T Consensus 400 ~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf 479 (709)
T COG2274 400 ILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSF 479 (709)
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEE
Confidence 999999999999999985432 2222111000 000001111111111 0011 123344556899999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEE
Q 006571 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (640)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (640)
+|. ..+.++|+|+|++|+|||.+||+|+||||||||+|+|+|. +. |.+|+|.+||.|+.+ .+|++|||
T Consensus 480 ~y~------~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-y~-p~~G~I~~dg~dl~~i~~~~lR~~ig~ 551 (709)
T COG2274 480 RYG------PDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-YK-PQQGRILLDGVDLNDIDLASLRRQVGY 551 (709)
T ss_pred EeC------CCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEeHHhcCHHHHHhheeE
Confidence 993 2334799999999999999999999999999999999985 44 458999999999853 68999999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC
Q 006571 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (640)
Q Consensus 234 V~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~ 313 (640)
|+||+.+|.. |++||+.++......+.+-.+...+.+++.+. .++.++||.+|+. ..+||||||||++|||||+++
T Consensus 552 V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E~-G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 552 VLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGEG-GANLSGGQRQRLALARALLSK 627 (709)
T ss_pred EcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hcccccccccccC-CCCCCHHHHHHHHHHHHhccC
Confidence 9999999975 99999998743211011112222334556665 4588999999865 467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHH
Q 006571 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (640)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (640)
|+||+||||||+||+.++..|.+.|.++.. |+|+|+++|+++. .+.||||+||++|+|+++|+|+|+++.
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~t--i~~adrIiVl~~Gkiv~~gs~~ell~~ 697 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQ 697 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccchH--hhhccEEEEccCCceeccCCHHHHHHh
Confidence 999999999999999999999999999865 8999999999874 688999999999999999999999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-50 Score=394.88 Aligned_cols=221 Identities=32% Similarity=0.522 Sum_probs=199.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|++++|+++| +++.||+|||++|++||+++||||||||||||||+|.|.+. +++|+|+++|+++.+
T Consensus 7 ~~I~vr~v~~~f--------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls 76 (263)
T COG1127 7 PLIEVRGVTKSF--------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLS 76 (263)
T ss_pred ceEEEeeeeeec--------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccC
Confidence 369999999998 68899999999999999999999999999999999999764 568999999999742
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+|+++|++||+-.||..+||+||+.|..+-. ..++++..++.+..-|+.+||... +++.++.+|||||
T Consensus 77 ~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~----~~~~~PsELSGGM 150 (263)
T COG1127 77 EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGA----AADLYPSELSGGM 150 (263)
T ss_pred HHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChh----hhhhCchhhcchH
Confidence 46889999999999999999999999986543 346788888888888999999765 1234688999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
+||++|||||+.||+|||+||||+||||.++..+.++++++.+. |.|+|++|||..+ ++..|||+++|.+|+|++.|+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s-~~~i~Drv~~L~~gkv~~~Gt 229 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGT 229 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHH-HHhhhceEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999876 9999999999764 889999999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++.+
T Consensus 230 ~~el~~ 235 (263)
T COG1127 230 PEELLA 235 (263)
T ss_pred HHHHHh
Confidence 999864
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=416.60 Aligned_cols=222 Identities=34% Similarity=0.582 Sum_probs=199.6
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.++++||+++| + ++.+|+||||+|++|+++||+||||||||||+|+|+|... +++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~--------~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~ 73 (293)
T COG1131 4 VIEVRNLTKKY--------GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEP 73 (293)
T ss_pred eeeecceEEEe--------CCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCH
Confidence 57899999998 4 5789999999999999999999999999999999999764 468999999998754
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++++|||+|++.+++.+||+|||.|.+.++.+. ....+++++++++.+||.+..++ .+++||+|||||+
T Consensus 74 ~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~-----~~~~lS~G~kqrl 145 (293)
T COG1131 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANK-----KVRTLSGGMKQRL 145 (293)
T ss_pred HHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCc-----chhhcCHHHHHHH
Confidence 56889999999999999999999999999887532 24566789999999999874443 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+||+||+.+|++|||||||+||||.++.++.+.|++++++| +||+++||++. ++..+||+|++|++|++++.|+++++
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887 89999999976 57888999999999999999999998
Q ss_pred HHHHHh
Q 006571 384 MAYFSS 389 (640)
Q Consensus 384 ~~~f~~ 389 (640)
...+..
T Consensus 225 ~~~~~~ 230 (293)
T COG1131 225 KEKFGG 230 (293)
T ss_pred HHhhcc
Confidence 776653
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-50 Score=405.01 Aligned_cols=220 Identities=31% Similarity=0.481 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++.
T Consensus 2 ~L~~~~ls~~y--------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~ 71 (258)
T COG1120 2 MLEVENLSFGY--------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSP 71 (258)
T ss_pred eeEEEEEEEEE--------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCH
Confidence 58999999999 46789999999999999999999999999999999998664 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
+++.+++|||||.+.....+||+|-+.++..-+... ....+++++.+++.|+.+|+.+.++.. +.+||||||||
T Consensus 72 kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----~~~LSGGerQr 146 (258)
T COG1120 72 KELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----VDELSGGERQR 146 (258)
T ss_pred HHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----ccccChhHHHH
Confidence 356789999999988777899999999985322111 112344556799999999999988865 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|.|||||+++|+||+||||||.||...+.++++.++++++ +|+|||+++||++. +.++||++++|++|+++..|+|++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999985 59999999999875 679999999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
++
T Consensus 226 vl 227 (258)
T COG1120 226 VL 227 (258)
T ss_pred hc
Confidence 75
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=418.86 Aligned_cols=233 Identities=27% Similarity=0.473 Sum_probs=207.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..++++||+++| ++..+|+|+|++|++||+++|+|||||||||||++|+|.. . +++|+|.++|+++..
T Consensus 4 ~~l~i~~v~k~y--------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~-p~~G~I~l~G~~i~~lp 73 (352)
T COG3842 4 PALEIRNVSKSF--------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-Q-PSSGEILLDGEDITDVP 73 (352)
T ss_pred ceEEEEeeeeec--------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEECCCCC
Confidence 369999999998 4678999999999999999999999999999999999954 3 569999999999964
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+|.||+|||+..|||+|||+||+.|+...+ ....+++.++++.++++.++|++..+. ++.+|||||||||+
T Consensus 74 p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R-----~p~qLSGGQqQRVA 146 (352)
T COG3842 74 PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADR-----KPHQLSGGQQQRVA 146 (352)
T ss_pred hhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhh-----ChhhhChHHHHHHH
Confidence 45889999999999999999999999998743 334567788999999999999987664 56899999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||++|++|+|...|+|+|+.
T Consensus 147 LARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~eiY 225 (352)
T COG3842 147 LARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPEEIY 225 (352)
T ss_pred HHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHHHHh
Confidence 999999999999999999999999999999999999764 999999999965 678999999999999999999999984
Q ss_pred HHHHhcCCCCCCCCChHHHHHH
Q 006571 385 AYFSSIGCSPQIAMNPAEFLLD 406 (640)
Q Consensus 385 ~~f~~~g~~~~~~~npad~~~~ 406 (640)
..|...-.|+|+-+
T Consensus 226 --------~~P~~~fVA~FiG~ 239 (352)
T COG3842 226 --------ERPATRFVADFIGE 239 (352)
T ss_pred --------hCcchHHHHHHhCc
Confidence 34555555777654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=393.88 Aligned_cols=204 Identities=32% Similarity=0.513 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.+++++|++.| +...+|+|||++|.+||+++|+||||||||||||+|+|... +++|+|.++|+++ ....
T Consensus 3 ~l~i~~v~~~f--------~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v-~~p~ 71 (248)
T COG1116 3 LLEIEGVSKSF--------GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPV-TGPG 71 (248)
T ss_pred eEEEEeeEEEe--------CceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccc-CCCC
Confidence 58999999998 34789999999999999999999999999999999999653 5689999999998 4556
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..++||||++.|+|.+||.||+.++...+. .++++.++++.++|+.+||.+..|. ++++|||||||||+|||
T Consensus 72 ~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~-----~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 72 PDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDK-----YPHQLSGGMRQRVAIAR 143 (248)
T ss_pred CCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhc-----CccccChHHHHHHHHHH
Confidence 789999999999999999999999987642 4567777899999999999987764 67899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
||+.+|+||+||||+++||+.++..+.+.|.++++ .++||+++|||.. ++..++|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999975 4899999999976 577899999999984
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=414.58 Aligned_cols=218 Identities=28% Similarity=0.487 Sum_probs=199.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||++.| ++..+|+|+|++|++||+++|+||||||||||||+|+|... +++|+|.++|++++. .
T Consensus 3 ~i~l~~v~K~y--------g~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P 72 (338)
T COG3839 3 ELELKNVRKSF--------GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPP 72 (338)
T ss_pred EEEEeeeEEEc--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh
Confidence 58999999998 23239999999999999999999999999999999999543 569999999999874 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.+|.||+|||+..|||+|||+|||.|+.+.+ ..++++.+++++++.+.++|.+..|. ++++|||||||||+|
T Consensus 73 ~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r-----~P~~LSGGQrQRVAl 144 (338)
T COG3839 73 EKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNR-----KPLQLSGGQRQRVAL 144 (338)
T ss_pred hHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhc-----CcccCChhhHHHHHH
Confidence 4689999999999999999999999998765 45788899999999999999998876 468999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+++|+++|||||+|+||+..+..+...|+++.++ |.|+|++|||.. ++..++|||++|++|+|...|+|.|+..
T Consensus 145 aRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 145 ARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999999999865 899999999964 6889999999999999999999999853
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=389.76 Aligned_cols=210 Identities=35% Similarity=0.579 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++||++.|..++ ....+|++|||+|++||++||+|||||||||||++|.|... | ++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~----~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-p-t~G~v~i~g~d~~~l~~~ 75 (226)
T COG1136 2 IELKNVSKIYGLGG----EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-P-TSGEVLINGKDLTKLSEK 75 (226)
T ss_pred cEEeeeEEEeccCC----cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-C-CCceEEECCEEcCcCCHH
Confidence 67899999984322 23679999999999999999999999999999999998543 4 69999999988752
Q ss_pred ---hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ---SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+ +++||||||+..|+|.+||+||+.+++.+.. .+.....++++++++.+||.+..+. .++.+||||||
T Consensus 76 ~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~----~~p~eLSGGqq 148 (226)
T COG1136 76 ELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLK----KKPSELSGGQQ 148 (226)
T ss_pred HHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhcc----CCchhcCHHHH
Confidence 23 4679999999999999999999998775542 2333567778899999999866552 34689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+|||||+.+|+|||.||||.+||+.+...|+++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 9999999999999999999999999999999999999999865 999999999964 6789999999999994
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=393.21 Aligned_cols=219 Identities=31% Similarity=0.557 Sum_probs=189.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++|+++.| +.+++|+||||+|++|++++|+||||||||||+|+|.|.+. +.+|+|.++|++..+..
T Consensus 3 ~~i~v~nl~v~y--------~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~ 72 (254)
T COG1121 3 PMIEVENLTVSY--------GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRR 72 (254)
T ss_pred cEEEEeeeEEEE--------CCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccc
Confidence 369999999999 22269999999999999999999999999999999999764 56899999999876543
Q ss_pred -cCcEEEEccC---CCCCCCCCHHHHHHHHHhccCC--CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 228 -KSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 228 -~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
+.+||||||. +.-|| +||+|.+..+...+.. ... .+.+++.++++|+.+|+.+..|..+| +|||||+
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~-~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~ 145 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRL-NKKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQK 145 (254)
T ss_pred cCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccc-cHHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHH
Confidence 4689999995 44577 6999999987433321 112 23447789999999999999998765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||.|||||+.+|++|+|||||+|+|+.++..|+++|++++++|+||++++||+.. +.++||+|+.| +++++..|+++
T Consensus 146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~-v~~~~D~vi~L-n~~~~~~G~~~ 223 (254)
T COG1121 146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPE 223 (254)
T ss_pred HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHH-hHhhCCEEEEE-cCeeEeccChh
Confidence 99999999999999999999999999999999999999999889999999999875 78999999999 57789999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 224 ~~~~ 227 (254)
T COG1121 224 EVLT 227 (254)
T ss_pred hccC
Confidence 8754
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=384.51 Aligned_cols=223 Identities=28% Similarity=0.489 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+..|+ +++++|+||||+|++||++||+|||||||||||++|+|. .+ +++|+|.+||.++..
T Consensus 3 ~i~~~nl~k~yp-------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-~d-~t~G~i~~~g~~i~~~~~ 73 (258)
T COG3638 3 MIEVKNLSKTYP-------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-VD-PTSGEILFNGVQITKLKG 73 (258)
T ss_pred eEEEeeeeeecC-------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-cC-CCcceEEecccchhccch
Confidence 699999999984 467899999999999999999999999999999999984 43 468999999987642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
.+|++|||++|++.|.+.+||.+|+..+...+.+. .+..++.+..+.+.|+.+|+.+.+-++. ..|
T Consensus 74 k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra-----~~L 148 (258)
T COG3638 74 KELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA-----STL 148 (258)
T ss_pred HHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh-----ccC
Confidence 46889999999999999999999999876443321 1223455667889999999988776654 589
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||+|||+|||||+.+|+|||.|||+++|||.+++++++.|+++++ +|.|||++.|+.. .+.++||||+-|++|+|+
T Consensus 149 SGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~G~iv 227 (258)
T COG3638 149 SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKAGRIV 227 (258)
T ss_pred CcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecCCcEE
Confidence 99999999999999999999999999999999999999999999985 5999999999976 477899999999999999
Q ss_pred EecChHHHHHH
Q 006571 376 YFGKASEAMAY 386 (640)
Q Consensus 376 ~~G~~~~~~~~ 386 (640)
|+|+++++-+.
T Consensus 228 fDg~~~el~~~ 238 (258)
T COG3638 228 FDGPASELTDE 238 (258)
T ss_pred EeCChhhhhHH
Confidence 99999987543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=452.26 Aligned_cols=356 Identities=25% Similarity=0.331 Sum_probs=255.6
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
.+..+..++..++..+...|..++.+++++|+.+..+.+++.++.........+.....+........+..-..+.-+..
T Consensus 177 ~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
T COG1132 177 RKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLAL 256 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999988888876655444432111111111001111111122333456
Q ss_pred hhhHhhhhhhhhhhhhccccCCCC----cccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGFTMP----PDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|..++..+..+.|.+.+|..+... ...+ +..+.+...+.++.++.... ........|+
T Consensus 257 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~------~~~~~~~~I~ 330 (567)
T COG1132 257 GGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD------PLKDTIGSIE 330 (567)
T ss_pred HHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC------CCCCCCCeEE
Confidence 666666666666766666543321 1111 11111122221111111110 0111224599
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
|+||+|+|+ +++++|+|+||+++|||.+||+||||||||||+++|.+ +++| .+|+|.+||.|+++ .+
T Consensus 331 f~~vsf~y~-------~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r-~~~~-~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 331 FENVSFSYP-------GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR-LYDP-TSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEEEEEEcC-------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc-cCCC-CCCeEEECCEehhhcCHHHH
Confidence 999999982 25789999999999999999999999999999999996 5654 58999999999863 67
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
|++|+||+||+.+|. -||+|||.++......+.+.+..+...+++.++.+ +++.||.+|.. ...||||||||++||
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge~-G~~LSgGQrQrlaiA 477 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGER-GVNLSGGQRQRLAIA 477 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecCC-CccCCHHHHHHHHHH
Confidence 999999999999997 59999999984211111111222223345555544 88899999944 456999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+++|+||+||||||+||+.++..|.+.++++. +++|+|+++|++++ + +.||+|++|++|++++.|+|+|+++
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~IiVl~~G~i~e~G~h~eLl~ 552 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRIIVLDNGRIVERGTHEELLA 552 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999887 57899999999865 4 5599999999999999999999986
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=373.30 Aligned_cols=220 Identities=28% Similarity=0.459 Sum_probs=200.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|++.+++++|+ ....+++||||+++.||+++|+|||||||||+|++|++.+. |++|.|++||.+..+
T Consensus 1 Ml~v~~l~K~y~-------~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~ 71 (245)
T COG4555 1 MLEVTDLTKSYG-------SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPS 71 (245)
T ss_pred Ceeeeehhhhcc-------CHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChH
Confidence 478899999982 23459999999999999999999999999999999999765 468999999998743
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..|++||.++.+..+|..||++|||.|.+++. .+.+.+.++++.++.+.|+|.++.|+.+| ++|-|+||||+
T Consensus 72 ~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~ 143 (245)
T COG4555 72 FVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVA 143 (245)
T ss_pred HHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHH
Confidence 46899999998899999999999999998875 56788889999999999999999998875 79999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+++|++++|||||||||..+...+.+.++++.+.|++||++||.. +++..+||+|++|++|++++.|+++++..
T Consensus 144 iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 144 IARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred HHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 99999999999999999999999999999999999998899999999995 56888999999999999999999998765
Q ss_pred H
Q 006571 386 Y 386 (640)
Q Consensus 386 ~ 386 (640)
.
T Consensus 223 r 223 (245)
T COG4555 223 R 223 (245)
T ss_pred H
Confidence 3
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-49 Score=447.76 Aligned_cols=215 Identities=26% Similarity=0.423 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++|+||+|.|. +++++|+|+||+|+||+.+||+||||||||||+++|+|. + | .+|+|.+||.++.+
T Consensus 349 ~i~~~~vsf~~~-------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-~-p-~~G~I~i~g~~i~~~~~ 418 (588)
T PRK11174 349 TIEAEDLEILSP-------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-L-P-YQGSLKINGIELRELDP 418 (588)
T ss_pred eEEEEeeEEecc-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-C-C-CCcEEEECCEecccCCH
Confidence 599999998762 246799999999999999999999999999999999984 5 4 48999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+|++|+||+|++.+|+. |++|||.++. | +.++++..+ .+++.++ .|+++.||.+|.. ...||||
T Consensus 419 ~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT~vge~-G~~LSGG 489 (588)
T PRK11174 419 ESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDTPIGDQ-AAGLSVG 489 (588)
T ss_pred HHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hcccccccccccC-CCCCCHH
Confidence 578999999999999975 9999999863 1 233333222 2334444 3577889999876 4569999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+++|+||+||||||+||+.++..|.+.|+++. +++|+|++||+++. .+.||+|++|++|++++.|+
T Consensus 490 QrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~~--i~~aD~Iivl~~G~i~e~G~ 566 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLED--LAQWDQIWVMQDGQIVQQGD 566 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChHH--HHhCCEEEEEeCCeEeecCC
Confidence 9999999999999999999999999999999999999999886 48999999999853 57799999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
|+|+++
T Consensus 567 ~~eL~~ 572 (588)
T PRK11174 567 YAELSQ 572 (588)
T ss_pred HHHHHh
Confidence 999874
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-48 Score=391.18 Aligned_cols=220 Identities=28% Similarity=0.513 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE---eCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~---~~~~ 225 (640)
+|.++|+++.+ +...+++|||++|+.||++|++|||||||||||++|+|... ++.|.|.+||+ |.++
T Consensus 2 ~i~i~~~~~~~--------~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~ 71 (345)
T COG1118 2 SIRINNVKKRF--------GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSN 71 (345)
T ss_pred ceeehhhhhhc--------ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhc
Confidence 47888888877 46679999999999999999999999999999999999654 56899999999 5443
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
...++||||+|+..+|++|||.+||.|+...+ ....++.+.+.++.++|+.+.|++..+ +++.+||||||||
T Consensus 72 ~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~-----ryP~QLSGGQrQR 145 (345)
T COG1118 72 LAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLAD-----RYPAQLSGGQRQR 145 (345)
T ss_pred cchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhh-----cCchhcChHHHHH
Confidence 23478999999999999999999999998766 223456778899999999999987665 5789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++||||+.+|++||||||+++||..-+.++.+.|+++.++ |.|++++|||+. ++.++||||++|++|+|...|+++|
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~p~e 224 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDE 224 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCCHHH
Confidence 99999999999999999999999999999999999999876 999999999965 6889999999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+.+
T Consensus 225 v~~ 227 (345)
T COG1118 225 VYD 227 (345)
T ss_pred Hhc
Confidence 853
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-48 Score=366.77 Aligned_cols=213 Identities=29% Similarity=0.470 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+|+||++.|+ ..+++|+||||.|++||++-|+||||||||||||+|.+... ++.|+|+++|+++..
T Consensus 1 mI~f~~V~k~Y~-------~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~ 71 (223)
T COG2884 1 MIRFENVSKAYP-------GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKG 71 (223)
T ss_pred CeeehhhhhhcC-------CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccc
Confidence 489999999983 23679999999999999999999999999999999998543 568999999999852
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+|++||+||||..|.++.||+||+.|+.... ..+..+.++++.++|+.+||.+..+. .+.+||||||
T Consensus 72 ~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~-----lP~~LSGGEQ 143 (223)
T COG2884 72 REIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARA-----LPSQLSGGEQ 143 (223)
T ss_pred cccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhc-----CccccCchHH
Confidence 47999999999999999999999999998764 35678889999999999999987764 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||+||||++.+|++||.||||.+|||..+.+|++++.++.+.|.|||+.|||.. .+..+-.|++.|++|+++....
T Consensus 144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999953 4666678999999999987654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-47 Score=399.49 Aligned_cols=219 Identities=27% Similarity=0.431 Sum_probs=194.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 6 ~~i~i~~l~k~~--------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~ 75 (306)
T PRK13537 6 APIDFRNVEKRY--------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRA 75 (306)
T ss_pred ceEEEEeEEEEE--------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccch
Confidence 369999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..+++||||||++.+++.+||+||+.|.+..+ ..+..+..+++.++++.++|.+..++.+ ++||||||||+
T Consensus 76 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 147 (306)
T PRK13537 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRL 147 (306)
T ss_pred HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHH
Confidence 45788999999999999999999999866543 2334455567889999999988777654 68999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 226 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPHALI 226 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999999986
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 227 ~ 227 (306)
T PRK13537 227 E 227 (306)
T ss_pred h
Confidence 4
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=456.76 Aligned_cols=345 Identities=20% Similarity=0.267 Sum_probs=248.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.++.-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-+..|+
T Consensus 302 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 381 (686)
T TIGR03797 302 KERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAI 381 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666777888899999999999999999888887776665544433321111111111112222223344456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.+++|..+.. |...+.. .+.....+.+++.+. ... ..+.....|+++
T Consensus 382 ~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~-~~~~~~~~I~~~ 455 (686)
T TIGR03797 382 SLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE-----AKT-DPGKLSGAIEVD 455 (686)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-----CcC-CCCCCCceEEEE
Confidence 888888888887777654321 2111111 011111111111000 000 011122369999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ ..++++|+|+||+|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+++.+ .+|+
T Consensus 456 nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 456 RVTFRYR------PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-ET-PESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred EEEEEcC------CCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCCEEEECCEEcCcCCHHHHHh
Confidence 9999993 1346799999999999999999999999999999999985 44 458999999999863 5789
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
+||||+|++.+|+. |++|||.++.. .++++ +.++++.. .++++.||.+|+. ...|||||||
T Consensus 528 ~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~e~----i~~al~~a~l~~~i~~lp~G~dt~ige~-G~~LSGGQrQ 595 (686)
T TIGR03797 528 QLGVVLQNGRLMSG-SIFENIAGGAP------LTLDE----AWEAARMAGLAEDIRAMPMGMHTVISEG-GGTLSGGQRQ 595 (686)
T ss_pred ccEEEccCCccCcc-cHHHHHhcCCC------CCHHH----HHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHHH
Confidence 99999999999975 99999998632 22222 33333333 3467789999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+++|+||+||||||+||+.++.++.+.|+++ ++|+|++||+++. .+.||+|++|++|++++.|++++
T Consensus 596 RialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~--i~~~D~Iivl~~G~iv~~G~~~~ 670 (686)
T TIGR03797 596 RLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST--IRNADRIYVLDAGRVVQQGTYDE 670 (686)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH--HHcCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999876 5899999999853 57799999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 671 Ll~ 673 (686)
T TIGR03797 671 LMA 673 (686)
T ss_pred HHh
Confidence 864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-49 Score=458.50 Aligned_cols=349 Identities=23% Similarity=0.338 Sum_probs=254.8
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
++.++.++..++..+.+.|..++.+|||.++.+..+.++|.+.+.+......+.....+.+.........-..+.-+..|
T Consensus 327 ~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g 406 (711)
T TIGR00958 327 LLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYG 406 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888899999999999999999999999999999888766655443333333221222222223344455688
Q ss_pred hhHhhhhhhhhhhhhccccCCCCcc----cc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTMPPD----EI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.+.++..+..... .+ +..+.+...+.++..+.. ...........|+|
T Consensus 407 ~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-----~~~~~~~~~~~I~~ 481 (711)
T TIGR00958 407 GQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-----GTLAPLNLEGLIEF 481 (711)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-----CCCCCCCCCCeEEE
Confidence 8888888888888877765432111 11 111111111111111100 00000112236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+. .+++++|+|+||+|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||+|+.+ .++
T Consensus 482 ~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 482 QDVSFSYPN-----RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-YQ-PTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred EEEEEECCC-----CCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-cC-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999842 2246799999999999999999999999999999999985 44 468999999999853 578
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (640)
++|+||+|++.+|+. |++|||.++.. ..++++ +.++++..+ ++++.||.+|+. ...||||||
T Consensus 555 ~~i~~v~Q~~~lF~g-TIreNI~~g~~-----~~~~e~----i~~al~~a~l~~~i~~lp~GldT~ige~-G~~LSGGQk 623 (711)
T TIGR00958 555 RQVALVGQEPVLFSG-SVRENIAYGLT-----DTPDEE----IMAAAKAANAHDFIMEFPNGYDTEVGEK-GSQLSGGQK 623 (711)
T ss_pred hhceEEecCcccccc-CHHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCCCccCCcccCC-CCcCCHHHH
Confidence 899999999999975 99999998632 122222 333333333 466789998865 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|+|||||||||+||+.++..+.+ .. ..+++|+|+++|+++. .+.||+|++|++|+|++.|+|+
T Consensus 624 QRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 624 QRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999988 22 2358999999999863 5779999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+++
T Consensus 699 eL~~ 702 (711)
T TIGR00958 699 QLME 702 (711)
T ss_pred HHHh
Confidence 9875
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=402.64 Aligned_cols=221 Identities=24% Similarity=0.415 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ .+.+++|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~----~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~ 74 (343)
T TIGR02314 1 MIKLSNITKVFHQG----TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSN 74 (343)
T ss_pred CEEEEEEEEEECCC----CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 37999999998311 123579999999999999999999999999999999999543 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..+++||||||++.+++.+||+||+.++.... ..++++.++++.++++.+||.+..|. ++.+||||||
T Consensus 75 ~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~-----~~~~LSgGqk 146 (343)
T TIGR02314 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDS-----YPSNLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 24678999999999999999999999976532 23456667789999999999887665 4578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||++||+.++..+++.|++++++ |.|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 QRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 147 QRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999875 999999999965 57789999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 226 ~~v~ 229 (343)
T TIGR02314 226 SEIF 229 (343)
T ss_pred HHHH
Confidence 8874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-47 Score=370.13 Aligned_cols=233 Identities=24% Similarity=0.437 Sum_probs=197.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcccEEEECCEeC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPY 223 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~----~~~G~I~~~G~~~ 223 (640)
..++++||++.| +++.+|+|||+.|++++++|++|||||||||||++|. |..+. ..+|+|.++|+++
T Consensus 6 ~~~~~~~l~~yY--------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lN-Rmndl~~~~r~~G~v~~~g~ni 76 (253)
T COG1117 6 PAIEVRDLNLYY--------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLN-RMNDLIPGARVEGEVLLDGKNI 76 (253)
T ss_pred ceeEecceeEEE--------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHH-hhcccCcCceEEEEEEECCeec
Confidence 368999999998 5788999999999999999999999999999999998 55432 2579999999998
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .+|++||+|||.|..|| +|++||+.|+.++.. ...++.++.|+..|+.-.|.+.-...+ +....+||
T Consensus 77 ~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL-~~sa~~LS 151 (253)
T COG1117 77 YDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRL-HKSALGLS 151 (253)
T ss_pred cCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHh-hCCccCCC
Confidence 43 57999999999999999 899999999987753 223667778888888877754322222 23346799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||+||++|||||+.+|+|||||||||+|||.+..+|-+++.+|++ .-|||++||.+. .+.+..|+..++..|+++++
T Consensus 152 GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnmq-QAaRvSD~taFf~~G~LvE~ 229 (253)
T COG1117 152 GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNMQ-QAARVSDYTAFFYLGELVEF 229 (253)
T ss_pred hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCHH-HHHHHhHhhhhhcccEEEEE
Confidence 9999999999999999999999999999999999999999999985 689999999965 57789999999999999999
Q ss_pred cChHHHHHHHHhcCCCCCCCCChHHHH
Q 006571 378 GKASEAMAYFSSIGCSPQIAMNPAEFL 404 (640)
Q Consensus 378 G~~~~~~~~f~~~g~~~~~~~npad~~ 404 (640)
|+.+++. ..|.+.-..||+
T Consensus 230 g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 230 GPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cCHHhhh--------cCccHHHHHHHh
Confidence 9999874 335555555664
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=481.59 Aligned_cols=354 Identities=20% Similarity=0.260 Sum_probs=255.1
Q ss_pred HHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhHhhh
Q 006571 15 SDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSRA 94 (640)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 94 (640)
++.+++.+..++|.+++.+|||+|+.+....++|.+..........+.....+.....+..++.-..+.-++.|+.++..
T Consensus 1015 ~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~ 1094 (1466)
T PTZ00265 1015 DEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRR 1094 (1466)
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34467788899999999999999999999999998877655433332222222221222233333455666789999988
Q ss_pred hhhhhhhhhccccCCC----------------CccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEE
Q 006571 95 SSASLGLSFSFTGFTM----------------PPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYK 158 (640)
Q Consensus 95 ~~~~~g~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~ 158 (640)
|..+.|.++.+..+.+ ..+..+..+.+...+.++.++............+.....|+|+||+|+
T Consensus 1095 g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~ 1174 (1466)
T PTZ00265 1095 GTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFR 1174 (1466)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEE
Confidence 8888877655431111 111112222222222111111000000000000112236999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---------------------------
Q 006571 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--------------------------- 211 (640)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--------------------------- 211 (640)
|+. +++++||+|+||+|+||+.+||+||||||||||+++|.| +++|.
T Consensus 1175 Y~~-----~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r-~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1248 (1466)
T PTZ00265 1175 YIS-----RPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR-FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQ 1248 (1466)
T ss_pred CCC-----CCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHH-hCCCcccccccccccccccccccccccccccc
Confidence 842 234579999999999999999999999999999999997 56552
Q ss_pred --------------------------cccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 212 --------------------------VGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 212 --------------------------~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
.+|+|++||.++. +.+|++||||+|++.||+ .|++|||.|+.. .
T Consensus 1249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~-----~ 1322 (1466)
T PTZ00265 1249 NVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE-----D 1322 (1466)
T ss_pred ccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----C
Confidence 5899999999985 367999999999999996 599999999732 2
Q ss_pred ccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 262 LTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 262 ~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
.+.++.+ +.+++++. .|++++||.||.. ...||||||||++|||||+++|+|||||||||+||+.++..|.+
T Consensus 1323 at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1323 ATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCHHHHHHHHHHcCCHHHHH--hCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 2333322 23344554 4688999999865 45699999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcC----CeEE-EecChHHHHH
Q 006571 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK----GSLL-YFGKASEAMA 385 (640)
Q Consensus 337 ~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~----G~iv-~~G~~~~~~~ 385 (640)
.|+++. .+++|+|+|+|+++. .+.||+|++|++ |+++ +.|+|+|+++
T Consensus 1400 ~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1400 TIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 999986 358999999999864 578999999999 9955 8999999974
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=380.91 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=187.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (235)
T cd03261 1 IELRGLTKSF--------GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEA 70 (235)
T ss_pred CeEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChh
Confidence 4789999998 34579999999999999999999999999999999999653 468999999998642
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++||+|++.+++.+||+||+.++..... ..+.++..+++.++++.+||.+..++. +..|||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 143 (235)
T cd03261 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLY-----PAELSGGMKK 143 (235)
T ss_pred hHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHH
Confidence 346789999999999999999999998753221 123445566788999999998766553 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||+|++|++|++++.|+++
T Consensus 144 rv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 222 (235)
T cd03261 144 RVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEGTPE 222 (235)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999874 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 223 ~~~ 225 (235)
T cd03261 223 ELR 225 (235)
T ss_pred HHc
Confidence 763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=401.39 Aligned_cols=218 Identities=27% Similarity=0.502 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||++++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 73 (353)
T TIGR03265 4 YLSIDNIRKRF--------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPP 73 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 59999999998 34679999999999999999999999999999999999653 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++.+.+++++++++.++|.+..+. .+.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~-----~~~~LSgGq~QRvaL 145 (353)
T TIGR03265 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERK-----YPGQLSGGQQQRVAL 145 (353)
T ss_pred HHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999987543 24566677889999999999887765 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|++++.|+++++..
T Consensus 146 ARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~~~~ 224 (353)
T TIGR03265 146 ARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQEIYR 224 (353)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 5789999999999999999999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=401.46 Aligned_cols=218 Identities=28% Similarity=0.469 Sum_probs=193.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++|. +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 3 ~l~i~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 73 (356)
T PRK11650 3 GLKLQAVRKSYD-------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEP 73 (356)
T ss_pred EEEEEeEEEEeC-------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 24579999999999999999999999999999999999653 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++.+..++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 74 ~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LSgGq~QRval 145 (356)
T PRK11650 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDR-----KPRELSGGQRQRVAM 145 (356)
T ss_pred HHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999986532 23556667789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 146 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~~~ 223 (356)
T PRK11650 146 GRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVEVY 223 (356)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999865 899999999965 578999999999999999999999874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-48 Score=451.52 Aligned_cols=354 Identities=23% Similarity=0.287 Sum_probs=247.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.+++-++..+...|.+.+.+|+|+++.+....+++.+...+......+.....+.........+.-..+.-+..|+
T Consensus 320 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 399 (710)
T TIGR03796 320 ANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG 399 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677888899999999999999999888888876665544432221111111101111122222334456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccC-CCC-CCCCCCCCCeeEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTR-ERP-KFQTEPTLPIYLK 151 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ 151 (640)
.++..|..+.|.+.+|..+.. |...+.. .+.....+.+++...... ... .....+.....|+
T Consensus 400 ~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~ 479 (710)
T TIGR03796 400 LRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVE 479 (710)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEE
Confidence 888888888888777664322 1111110 111111111111000000 000 0000011234699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|+ ..++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 480 ~~~vsf~y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 480 LRNITFGYS------PLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-YQ-PWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EEEEEEecC------CCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEeHHHCCHHHH
Confidence 999999993 2346799999999999999999999999999999999985 43 468999999999853 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|++||||+|++.+|+. |++|||.++. + ..++++..+. +++.++ .++++.||.+|+. ..+|||||||
T Consensus 552 r~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~~i~~al~~~~l~~~i~--~lp~gl~t~i~e~-G~~LSGGQrQ 622 (710)
T TIGR03796 552 ANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDADLVRACKDAAIHDVIT--SRPGGYDAELAEG-GANLSGGQRQ 622 (710)
T ss_pred HhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHHHHHHHHHHhCCHHHHH--hCcCcccceeccC-CCCCCHHHHH
Confidence 8999999999999975 9999998752 1 1233322221 223333 3566789999865 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+++|+|||||||||+||+.++.++.+.|++ .++|+|++||+++. ...||+|++|++|++++.|+|++
T Consensus 623 RiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 623 RLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred HHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCEEEEEeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999986 48999999999864 57799999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 698 Ll~ 700 (710)
T TIGR03796 698 LWA 700 (710)
T ss_pred HHH
Confidence 875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=399.52 Aligned_cols=217 Identities=25% Similarity=0.515 Sum_probs=194.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.+||+++.. .
T Consensus 6 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~ 75 (351)
T PRK11432 6 FVVLKNITKRF--------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSI 75 (351)
T ss_pred EEEEEeEEEEE--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. .+..|||||||||+|
T Consensus 76 ~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r-----~~~~LSgGq~QRVaL 147 (351)
T PRK11432 76 QQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDR-----YVDQISGGQQQRVAL 147 (351)
T ss_pred HHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 24566677889999999999876654 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||++||+.++.++.+.|+++.++ |+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 148 ARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~~~ 225 (351)
T PRK11432 148 ARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQELY 225 (351)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 578899999999999999999999875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-48 Score=450.06 Aligned_cols=353 Identities=24% Similarity=0.361 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++..+..++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 312 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~ 391 (694)
T TIGR03375 312 LAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677788888999999999999999999888888877665543332221111111101111112222334456788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Cccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.+++|..+.. |...+. ..+.....+.+++.+ .. ......+.....|+++
T Consensus 392 ~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~--~~--~~~~~~~~~~~~I~~~ 467 (694)
T TIGR03375 392 YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP--EG--TRFLHRPRLQGEIEFR 467 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CC--CCCCCCCCccceEEEE
Confidence 888888888888877764322 111111 011111111111000 00 0000011122469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ .+|+
T Consensus 468 ~vsf~Y~------~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-~~-p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 468 NVSFAYP------GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-YQ-PTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred EEEEEeC------CCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHHHh
Confidence 9999993 2346799999999999999999999999999999999985 44 458999999999853 5789
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+|+||+|++.+|+. |++|||.++. + ..++++..+ .+++.++ .|+++.||.+|+. ...||||||||+
T Consensus 540 ~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~--~lp~gl~T~i~e~-G~~LSgGQrQRl 610 (694)
T TIGR03375 540 NIGYVPQDPRLFYG-TLRDNIALGA----P-YADDEEILRAAELAGVTEFVR--RHPDGLDMQIGER-GRSLSGGQRQAV 610 (694)
T ss_pred ccEEECCChhhhhh-hHHHHHhCCC----C-CCCHHHHHHHHHHcChHHHHH--hCcccccceecCC-CCCCCHHHHHHH
Confidence 99999999999975 9999999862 1 123333222 2233333 3577889999865 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++. .+.||+|++|++|++++.|+|+|++
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~~--~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTSL--LDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHHH--HHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999999999999999999864 8999999999863 5789999999999999999999987
Q ss_pred HH
Q 006571 385 AY 386 (640)
Q Consensus 385 ~~ 386 (640)
+.
T Consensus 688 ~~ 689 (694)
T TIGR03375 688 EA 689 (694)
T ss_pred HH
Confidence 53
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-48 Score=451.88 Aligned_cols=352 Identities=21% Similarity=0.267 Sum_probs=252.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
++.++.+++-++..+...|.+.+.+|+|+++.+....+++.++.........+.....+.....+...+.-..+.-++.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g 400 (708)
T TIGR01193 321 KLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTG 400 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777888889999999999999999988888877766544443322111111110111111222234445688
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccccccc------------CCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDEIAD------------SKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.+.+|..+.. |...+.. .+.....+.+.+.+... .....+.....|++
T Consensus 401 ~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~----~~~~~~~~~~~I~~ 476 (708)
T TIGR01193 401 AYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKK----KRTELNNLNGDIVI 476 (708)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccc----cccCCCCCCCcEEE
Confidence 8888888888888887765432 2222111 11111111111110000 00011112236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~ 228 (640)
+||+|+|+ .++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|++||.++. +.+|
T Consensus 477 ~~vsf~y~-------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-~~-p~~G~I~idg~~i~~~~~~~lr 547 (708)
T TIGR01193 477 NDVSYSYG-------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-FQ-ARSGEILLNGFSLKDIDRHTLR 547 (708)
T ss_pred EEEEEEcC-------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-CC-CCCcEEEECCEEHHHcCHHHHH
Confidence 99999982 245799999999999999999999999999999999985 44 45899999999975 3678
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++||||+|++.+|+. |++|||.++.. + ..++++..+ .+++.++ .++++.||.+|+. ..+||||||||
T Consensus 548 ~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~i~~a~~~a~l~~~i~--~lp~gldt~i~e~-G~~LSgGQrQR 619 (708)
T TIGR01193 548 QFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDEIWAACEIAEIKDDIE--NMPLGYQTELSEE-GSSISGGQKQR 619 (708)
T ss_pred HheEEEecCceehhH-HHHHHHhccCC---C-CCCHHHHHHHHHHhCCHHHHH--hcccccCcEecCC-CCCCCHHHHHH
Confidence 999999999999976 99999998631 1 223322221 2333343 3567789999864 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|+||+||||||+||+.++..+.+.|+++ +++|+|+++|+++. .+.||+|++|++|++++.|+++++
T Consensus 620 ialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~~--~~~~D~i~~l~~G~i~~~G~~~~L 695 (708)
T TIGR01193 620 IALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLSV--AKQSDKIIVLDHGKIIEQGSHDEL 695 (708)
T ss_pred HHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchHH--HHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999985 48999999999863 578999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 696 ~~ 697 (708)
T TIGR01193 696 LD 697 (708)
T ss_pred Hh
Confidence 75
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=440.59 Aligned_cols=357 Identities=20% Similarity=0.281 Sum_probs=246.2
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.+++.++..+...+.....+++|+++.+....+++.+..........+..............+..-..+.-+..|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T PRK11176 191 NISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888889999999999999999988888888766554443322111111111111111111222334456
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCccccccC-------CCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFT----MPPDEIADS-------KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTY 157 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~ 157 (640)
+..+..|..+.|.+..+..+. .|...+... .+ ...++.+..+..+.........+..+..++++||+|
T Consensus 271 ~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~-~~~ri~~~~~~~~~~~~~~~~~~~~~~~i~~~~vsf 349 (582)
T PRK11176 271 SFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA-ACQTLFAILDLEQEKDEGKRVIERAKGDIEFRNVTF 349 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcCCCCCcCCCCCCCeEEEEEEEE
Confidence 666666666667654433221 122111100 00 000011101000000000000111223699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEE
Q 006571 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (640)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (640)
+|+ ..++++|+|+|++|++||.+||+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.|+|
T Consensus 350 ~y~------~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~~~~~~i~~ 421 (582)
T PRK11176 350 TYP------GKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-D-IDEGEILLDGHDLRDYTLASLRNQVAL 421 (582)
T ss_pred ecC------CCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCceEEECCEEhhhcCHHHHHhhceE
Confidence 983 13467999999999999999999999999999999999854 3 468999999999853 56889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 234 V~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|||++.+|+. |++|||.++. ++..++++..+. ++++++ .|+++.||.+|+. ...||||||||++|||
T Consensus 422 v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~~i~~al~~~~l~~~i~--~lp~Gldt~ig~~-g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 422 VSQNVHLFND-TIANNIAYAR----TEQYSREQIEEAARMAYAMDFIN--KMDNGLDTVIGEN-GVLLSGGQRQRIAIAR 493 (582)
T ss_pred EccCceeecc-hHHHHHhcCC----CCCCCHHHHHHHHHHhCcHHHHH--hcccccCceeCCC-CCcCCHHHHHHHHHHH
Confidence 9999999975 9999999852 212233332221 222333 3577889999865 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i~e~g~~~~l~~ 567 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEIVERGTHAELLA 567 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999998754 799999999985 467899999999999999999999874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=394.88 Aligned_cols=220 Identities=28% Similarity=0.423 Sum_probs=194.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 40 ~~i~i~nl~k~y--------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~ 109 (340)
T PRK13536 40 VAIDLAGVSKSY--------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARA 109 (340)
T ss_pred eeEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcch
Confidence 369999999998 35679999999999999999999999999999999999653 468999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.|||++|++.+++.+||.||+.+....+ ..+..+..++++++++.++|.+..++.+ ++||||||||+
T Consensus 110 ~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv 181 (340)
T PRK13536 110 RLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRL 181 (340)
T ss_pred HHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHH
Confidence 45678999999999999999999999765443 1233445566788999999988777654 68999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++.
T Consensus 182 ~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g~~~~l~ 260 (340)
T PRK13536 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEGRPHALI 260 (340)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999999878999999999975 578899999999999999999999986
Q ss_pred HH
Q 006571 385 AY 386 (640)
Q Consensus 385 ~~ 386 (640)
..
T Consensus 261 ~~ 262 (340)
T PRK13536 261 DE 262 (340)
T ss_pred hh
Confidence 53
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-46 Score=398.45 Aligned_cols=219 Identities=26% Similarity=0.456 Sum_probs=194.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc--cEEEECCEeCCh
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG--GSITYNDHPYSK 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~--G~I~~~G~~~~~ 225 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+ |+|.++|+++..
T Consensus 4 ~~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~ 73 (362)
T TIGR03258 4 GGIRIDHLRVAY--------GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTH 73 (362)
T ss_pred eEEEEEEEEEEE--------CCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCC
Confidence 358999999998 34579999999999999999999999999999999999653 568 999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.||||+|++.+||++||+|||.|+...+ ..++.+.+++++++++.++|.+..++ .+++||||||||
T Consensus 74 ~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~~~~LSgGq~QR 145 (362)
T TIGR03258 74 APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAH-----LPAQLSGGMQQR 145 (362)
T ss_pred CCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhC-----ChhhCCHHHHHH
Confidence 24578999999999999999999999987543 24556667789999999999887765 457999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~--g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++
T Consensus 146 vaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~~~ 224 (362)
T TIGR03258 146 IAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGEPQ 224 (362)
T ss_pred HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999876 799999999965 578899999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 225 ~~~~ 228 (362)
T TIGR03258 225 ALYD 228 (362)
T ss_pred HHHh
Confidence 9853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-48 Score=416.92 Aligned_cols=217 Identities=33% Similarity=0.567 Sum_probs=186.9
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (640)
+..|+|+||+|+|. ++++||+++||+|++||.+||+|+|||||||++|+|.+ +.+ .+|+|.+||+++.
T Consensus 349 ~~~I~F~dV~f~y~-------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~Llr-F~d--~sG~I~IdG~dik~~ 418 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG-------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLR-FFD--YSGSILIDGQDIKEV 418 (591)
T ss_pred CCcEEEEeeEEEeC-------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHH-Hhc--cCCcEEECCeeHhhh
Confidence 34699999999992 34569999999999999999999999999999999995 554 5899999999985
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHH-----HHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQK-----EKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
+.+|+.|||||||..||.+ ||.+||.|+.. ..+.++. +...++.+. .++++++|.+|++. ..||
T Consensus 419 ~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~eeV~e~~k~a~~hd~i~--~l~~GY~T~VGerG-~~LS 489 (591)
T KOG0057|consen 419 SLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEEVVEACKRAGLHDVIS--RLPDGYQTLVGERG-LMLS 489 (591)
T ss_pred ChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHHHHHHHHHcCcHHHHH--hccccchhhHhhcc-cccc
Confidence 3678999999999999975 99999999842 2233332 223444554 45889999999765 4599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+||||+++||+|+++|||||+||.+++.++++.+.+.. .++|+|++.|+++ ....||+|++|++|++.+.
T Consensus 490 GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l~--ll~~~DkI~~l~nG~v~e~ 566 (591)
T KOG0057|consen 490 GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRLD--LLKDFDKIIVLDNGTVKEY 566 (591)
T ss_pred cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecch--hHhcCCEEEEEECCeeEEe
Confidence 999999999999999999999999999999999999999999944 5899999999976 4688999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+|+|++.
T Consensus 567 gth~ell~ 574 (591)
T KOG0057|consen 567 GTHSELLA 574 (591)
T ss_pred ccHHHHhh
Confidence 99999986
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-46 Score=375.77 Aligned_cols=218 Identities=29% Similarity=0.532 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.++++|++|+|+ .. +.+|+|+|++|++||.++|+||||||||||+++|+|.+. +.+|.|.++|.++.
T Consensus 3 ~i~~~~l~~~y~------~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~ 73 (235)
T COG1122 3 MIEAENLSFRYP------GR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKS 73 (235)
T ss_pred eEEEEEEEEEcC------CC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhh
Confidence 589999999982 12 689999999999999999999999999999999999764 45899999999865
Q ss_pred -hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 -KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..+++++|||+|+| .+|. -||.|.+.|+.... .++.++.++++.++++.+||.+..+. .+..||||||
T Consensus 74 ~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r-----~p~~LSGGqk 144 (235)
T COG1122 74 LLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDR-----PPFNLSGGQK 144 (235)
T ss_pred HHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccC-----CccccCCcce
Confidence 25789999999997 5664 59999999997643 46677889999999999999988765 4689999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+||.+|+.+|++|+|||||+|||+..+.++++.++++.++ |+|||++|||.. .+..+||++++|++|+++++|++
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~g~p 223 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILADGDP 223 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeecCCH
Confidence 9999999999999999999999999999999999999999877 789999999965 57888999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
.++..
T Consensus 224 ~~i~~ 228 (235)
T COG1122 224 AEIFN 228 (235)
T ss_pred HHHhh
Confidence 88764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=369.35 Aligned_cols=221 Identities=28% Similarity=0.434 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|+++.|..+. ...++|+||||+|.+||+++|+|+||||||||.++|+|... +.+|+|.++|++..+
T Consensus 3 ~l~v~nl~~~y~~~~----~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~ 76 (252)
T COG1124 3 LLSVRNLSIVYGGGK----FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKR 76 (252)
T ss_pred eEEEeceEEEecCCc----chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCcccc
Confidence 689999999994221 12369999999999999999999999999999999999543 468999999987754
Q ss_pred --hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.|-+||||| .+.|..||++.|.-+... .+.++. ++++.++++.+||++..- ++++.+||||||
T Consensus 77 ~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~--~~~i~~~L~~VgL~~~~l----~R~P~eLSGGQ~ 147 (252)
T COG1124 77 AKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKS--QQRIAELLDQVGLPPSFL----DRRPHELSGGQR 147 (252)
T ss_pred chhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHH--HHHHHHHHHHcCCCHHHH----hcCchhcChhHH
Confidence 3578899999997 588999999999877643 233333 334899999999976432 356789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++||||||||+||+..+.+|+++|.++.++ +.|.|+++||.. .+..+||||+||++|++++.++.
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999999864 789999999965 58889999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 227 ~~l~~ 231 (252)
T COG1124 227 EELLS 231 (252)
T ss_pred hhhhc
Confidence 99864
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=436.61 Aligned_cols=349 Identities=22% Similarity=0.321 Sum_probs=245.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++..++.++...|.++..+++|+|+.+..+.+++.+......+...+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 266 (574)
T PRK11160 187 KPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLA 266 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888999999999999999999999988888888766655444332211111110111111111112223455
Q ss_pred hhHhhhhhhhhhhhhccccCC-----CCcc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 89 AALSRASSASLGLSFSFTGFT-----MPPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
+.+. .+..+.|.+.+|..+. .|.. ..+..+.....+.++..+. +.....+.....|+
T Consensus 267 ~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~~-----~~~~~~~~~~~~i~ 340 (574)
T PRK11160 267 AGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVTF-----PTTSTAAADQVSLT 340 (574)
T ss_pred HHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----CcccCCCCCCCeEE
Confidence 5443 3455566655543221 0111 1111111111111111000 00000011224699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
|+||+|+|+ .+++++|+|+||+++|||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+ .+
T Consensus 341 ~~~v~f~y~------~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 341 LNNVSFTYP------DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-WD-PQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred EEEEEEECC------CCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCceEEECCEEhhhCCHHHH
Confidence 999999983 1235799999999999999999999999999999999985 43 468999999999853 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC------CccccccccCccCCcCCHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~LSGGqr 301 (640)
|++|+||+|++.+|+. |++|||.++. + ..++ +++.++++..++ +++.||.+|+. ...||||||
T Consensus 413 r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge~-g~~LSgGqr 481 (574)
T PRK11160 413 RQAISVVSQRVHLFSA-TLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEG-GRQLSGGEQ 481 (574)
T ss_pred HhheeEEcccchhhcc-cHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhcCC-CCCCCHHHH
Confidence 8899999999999975 9999999863 1 1222 334555555554 56678998865 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. ...||+|++|++|++++.|+|+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeCCeEEEeCCHH
Confidence 99999999999999999999999999999999999999986 48999999999864 4679999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+++
T Consensus 559 ~l~~ 562 (574)
T PRK11160 559 ELLA 562 (574)
T ss_pred HHHh
Confidence 9874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=395.03 Aligned_cols=220 Identities=25% Similarity=0.471 Sum_probs=192.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|... +.+|+|+++|+++.. .
T Consensus 2 ~L~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~ 71 (353)
T PRK10851 2 SIEIANIKKSF--------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHA 71 (353)
T ss_pred EEEEEEEEEEe--------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999643 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.|+||+|++.+||++||+||+.|+...... ...+.++..+++.++++.++|++..+. ++..|||||||||+
T Consensus 72 ~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LSgGq~QRva 146 (353)
T PRK10851 72 RDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----YPAQLSGGQKQRVA 146 (353)
T ss_pred HHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 357899999999999999999999998653211 123455667789999999999876665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999875 899999999975 578899999999999999999999885
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=396.93 Aligned_cols=218 Identities=25% Similarity=0.440 Sum_probs=193.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++| +++.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 13 ~~L~l~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~ 82 (375)
T PRK09452 13 PLVELRGISKSF--------DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVP 82 (375)
T ss_pred ceEEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+|||+|++.+||++||+|||.|+...+ ..+..+.+++++++++.++|.+..+. .+.+|||||||||+
T Consensus 83 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~p~~LSgGq~QRVa 154 (375)
T PRK09452 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQR-----KPHQLSGGQQQRVA 154 (375)
T ss_pred HHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986532 23455666788999999999877765 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 155 LARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 155 IARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999865 899999999965 578899999999999999999999875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=387.92 Aligned_cols=218 Identities=28% Similarity=0.419 Sum_probs=190.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (303)
T TIGR01288 4 AIDLVGVSKSY--------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRAR 73 (303)
T ss_pred EEEEEeEEEEe--------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHH
Confidence 58999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+||++|++.+++.+||+||+.+..... ..+..+..++++++++.++|.+..++. +..||||||||++
T Consensus 74 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~-----~~~LSgG~~qrv~ 145 (303)
T TIGR01288 74 LARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVR-----VALLSGGMKRRLT 145 (303)
T ss_pred HHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCc-----hhhCCHHHHHHHH
Confidence 34678999999999999999999998754432 123344456678899999998777765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..
T Consensus 146 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 224 (303)
T TIGR01288 146 LARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPHALID 224 (303)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999878999999999975 5778999999999999999999998864
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=369.44 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (220)
T cd03265 1 IEVENLVKKY--------GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPRE 70 (220)
T ss_pred CEEEEEEEEE--------CCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHH
Confidence 4789999998 34579999999999999999999999999999999999653 568999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.++|++..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~l 142 (220)
T cd03265 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL-----VKTYSGGMRRRLEI 142 (220)
T ss_pred HhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHH
Confidence 4578999999999999999999999875432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++...||++++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 99999999999999999999999999999999999876 899999999975 47788999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=373.24 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=187.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (236)
T cd03219 1 LEVRGLTKRF--------GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPH 70 (236)
T ss_pred CeeeeeEEEE--------CCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHH
Confidence 4689999998 24569999999999999999999999999999999999653 568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC-------ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT-------LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
. .++.++|++|++.+++.+||+||+.++........ ....+..++++++++.+||.+..++. ++.||
T Consensus 71 ~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (236)
T cd03219 71 EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELS 145 (236)
T ss_pred HHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCC
Confidence 1 24569999999999999999999998754321110 01334456788999999998766553 47899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.
T Consensus 146 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~ 224 (236)
T cd03219 146 YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRVIAE 224 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999976 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 225 ~~~~~~~ 231 (236)
T cd03219 225 GTPDEVR 231 (236)
T ss_pred cCHHHhc
Confidence 9988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=392.17 Aligned_cols=221 Identities=24% Similarity=0.403 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ ..++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~~----~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~ 74 (343)
T PRK11153 1 MIELKNISKVFPQG----GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSE 74 (343)
T ss_pred CEEEEeEEEEeCCC----CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCH
Confidence 37899999998310 124579999999999999999999999999999999999653 568999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.||||+|++.+++.+||+||+.++.... ..+..+..+++.++++.+||.+..++. +.+||||||
T Consensus 75 ~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~ 146 (343)
T PRK11153 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRY-----PAQLSGGQK 146 (343)
T ss_pred HHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 23678999999999999999999999876532 234455567788999999998766653 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+|++|++|++++.|++
T Consensus 147 qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~g~~ 225 (343)
T PRK11153 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQGTV 225 (343)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999765 899999999975 57788999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 226 ~~~~ 229 (343)
T PRK11153 226 SEVF 229 (343)
T ss_pred HHHH
Confidence 8875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=369.20 Aligned_cols=209 Identities=27% Similarity=0.473 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|. .+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 ~l~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 72 (216)
T TIGR00960 1 MIRFEQVSKAYP------GGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRG 72 (216)
T ss_pred CeEEEEEEEEec------CCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcCh
Confidence 378999999982 112469999999999999999999999999999999999643 468999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.++|++|++.+++.+||+||+.++...+ .....+.++++.++++.+||.+..++. +..||||||
T Consensus 73 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 144 (216)
T TIGR00960 73 REIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHAL-----PMQLSGGEQ 144 (216)
T ss_pred hHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 24678999999999999999999999875432 123344556788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++
T Consensus 145 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 145 QRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999877899999999975 46678999999999975
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-45 Score=394.57 Aligned_cols=219 Identities=26% Similarity=0.459 Sum_probs=194.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 18 ~~l~l~~v~~~~--------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~ 87 (377)
T PRK11607 18 PLLEIRNLTKSF--------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVP 87 (377)
T ss_pred ceEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.||||+|++.+||++||.|||.|+...+ ..++.+.++++.++++.++|.+..+. .+.+|||||||||+
T Consensus 88 ~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~-----~~~~LSgGq~QRVa 159 (377)
T PRK11607 88 PYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKR-----KPHQLSGGQRQRVA 159 (377)
T ss_pred HHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhhCCHHHHHHHH
Confidence 34678999999999999999999999986543 23456667789999999999876664 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++||++. ++..++|+|++|++|+++..|+++++.
T Consensus 160 LARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~~~~ 238 (377)
T PRK11607 160 LARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPEEIY 238 (377)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999875 4899999999965 578999999999999999999999875
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 239 ~ 239 (377)
T PRK11607 239 E 239 (377)
T ss_pred h
Confidence 3
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=372.53 Aligned_cols=220 Identities=25% Similarity=0.459 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (239)
T cd03296 2 SIEVRNVSKRF--------GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPV 71 (239)
T ss_pred EEEEEeEEEEE--------CCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCc
Confidence 48999999998 24579999999999999999999999999999999999643 468999999998743 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.++||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++. +..||||||||++
T Consensus 72 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~ 146 (239)
T cd03296 72 QERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----PAQLSGGQRQRVA 146 (239)
T ss_pred cccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHH
Confidence 356799999999999889999999987543211 0012333455678899999997666543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 225 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVY 225 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHHHh
Confidence 999999999999999999999999999999999999865 899999999975 467889999999999999999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=366.95 Aligned_cols=210 Identities=31% Similarity=0.537 Sum_probs=181.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
++++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03259 1 LELKGLSKTY--------GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPE 70 (213)
T ss_pred CeeeeeEEEe--------CCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchh
Confidence 4689999998 24579999999999999999999999999999999999653 568999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++||+|++.+++.+||+||+.++.... ........+++.++++.++|.+..++. +..||||||||++||
T Consensus 71 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la 142 (213)
T cd03259 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRY-----PHELSGGQQQRVALA 142 (213)
T ss_pred hccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHH
Confidence 567999999999999999999999875432 123344556788999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++|++++.|
T Consensus 143 ~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 143 RALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999976 4899999999975 467889999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-45 Score=381.33 Aligned_cols=235 Identities=31% Similarity=0.445 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+|+|..+ ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|.++.
T Consensus 1 mi~~~~v~~~y~~~---~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 75 (288)
T PRK13643 1 MIKFEKVNYTYQPN---SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSK 75 (288)
T ss_pred CEEEEEEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 47999999998311 0112469999999999999999999999999999999999653 46899999999873
Q ss_pred ----hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 225 ----KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ----~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
..+++.+|||+|++ .+|+ .||.||+.|+.... ..+..+.++++.++++.+||. +..++ .++.||
T Consensus 76 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~~LS 146 (288)
T PRK13643 76 QKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEK-----SPFELS 146 (288)
T ss_pred cccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccC-----CcccCC
Confidence 13467899999986 5675 59999999876432 234556677889999999995 34443 457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.
T Consensus 147 gGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i~~~ 225 (288)
T PRK13643 147 GGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHIISC 225 (288)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999975 46788999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCCCCC
Q 006571 378 GKASEAMA---YFSSIGCSPQIAM 398 (640)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~~~~ 398 (640)
|+++++.. ++...|+.+|...
T Consensus 226 g~~~~~~~~~~~~~~~~~~~p~~~ 249 (288)
T PRK13643 226 GTPSDVFQEVDFLKAHELGVPKAT 249 (288)
T ss_pred CCHHHHHcCHHHHHHcCCCCChHH
Confidence 99998753 3456677666443
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=370.47 Aligned_cols=216 Identities=27% Similarity=0.512 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03218 1 LRAENLSKRY--------GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMH 70 (232)
T ss_pred CeEEEEEEEe--------CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHh
Confidence 4789999998 34579999999999999999999999999999999999653 568999999998642
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+++.+..++. +..||||||||+
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 142 (232)
T cd03218 71 KRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRV 142 (232)
T ss_pred HHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHH
Confidence 1 2457999999999999999999999865432 123344556788999999998766653 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|+++++.
T Consensus 143 ~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 221 (232)
T cd03218 143 EIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPEEIA 221 (232)
T ss_pred HHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHHHhh
Confidence 9999999999999999999999999999999999999877999999999975 578899999999999999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=428.91 Aligned_cols=355 Identities=25% Similarity=0.335 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.++.++..++..+...|...+.+|+|+|+.+....+++.+......+...+.....+........+..-..+.-+..|+.
T Consensus 169 ~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 248 (544)
T TIGR01842 169 LKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQSLVLGLGAY 248 (544)
T ss_pred HHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777778888999999999999999888888876655443332211111111111111222223344568888
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCC------CCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPDEIADSK------PFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
++..|..+.|.++++..+.. |...+.... ..+..++.+-++..+...+.. ..+.....++++||+|+|+
T Consensus 249 l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~i~~~~v~~~y~ 327 (544)
T TIGR01842 249 LAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPAM-PLPEPEGHLSVENVTIVPP 327 (544)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCC-CCCCCCCeEEEEEEEEEcC
Confidence 88888888888877764332 111111000 000000111111110000000 0111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (640)
.+++++|+|+|++++|||.++|+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||+|
T Consensus 328 ------~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 328 ------GGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-P-PTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ------CCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-C-CCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 12457999999999999999999999999999999999954 3 468999999998753 56789999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~ 311 (640)
++.+|+. |++||+.++.. ..++++.. ...+++++.+ ++..||.+|.. ...||||||||++|||||+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~~-----~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~~-g~~LSgGq~qrl~lARall 470 (544)
T TIGR01842 400 DVELFPG-TVAENIARFGE-----NADPEKIIEAAKLAGVHELILRL--PDGYDTVIGPG-GATLSGGQRQRIALARALY 470 (544)
T ss_pred Ccccccc-cHHHHHhccCC-----CCCHHHHHHHHHHhChHHHHHhC--ccccccccCCC-cCCCCHHHHHHHHHHHHHh
Confidence 9999986 99999986421 12232221 2234455543 56678888754 5679999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
++|++|+|||||+|||+.++..+.+.|+++..+|+|+|+++|+++ ..+.||+|++|++|++++.|+++++.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999998766899999999986 357899999999999999999998753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=394.02 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~i~~l~~~~--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~ 72 (369)
T PRK11000 3 SVTLRNVTKAY--------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPP 72 (369)
T ss_pred EEEEEEEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 48999999998 34579999999999999999999999999999999999653 468999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.|+||+|++.+|+.+||+||+.|+...+ ..+..+.+++++++++.+||.+..++. +.+|||||||||+|
T Consensus 73 ~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~-----~~~LSgGq~QRvaL 144 (369)
T PRK11000 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAI 144 (369)
T ss_pred hHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999999986533 234455667889999999998766654 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 145 AraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~i~ 222 (369)
T PRK11000 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELY 222 (369)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 899999999975 577899999999999999999999875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=370.61 Aligned_cols=220 Identities=27% Similarity=0.425 Sum_probs=187.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|..+ .+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~----~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (233)
T cd03258 2 IELKNVSKVFGDT----GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGK 75 (233)
T ss_pred eEEecceEEccCC----CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 7899999998210 011379999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+|++||+.+....+ ........+.+.++++.++|.+..+.. +..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 147 (233)
T cd03258 76 ELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQ 147 (233)
T ss_pred HHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHH
Confidence 23578999999999999999999999875432 123444556788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|+++
T Consensus 148 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 226 (233)
T cd03258 148 RVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEGTVE 226 (233)
T ss_pred HHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999765 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 227 ~~~ 229 (233)
T cd03258 227 EVF 229 (233)
T ss_pred HHh
Confidence 764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=365.53 Aligned_cols=210 Identities=30% Similarity=0.573 Sum_probs=183.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|+++.| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++....++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (210)
T cd03269 1 LEVENVTKRF--------GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDIAARN 70 (210)
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhHHHHc
Confidence 4789999998 24579999999999999999999999999999999999653 5689999999987655677
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +.+||||||||++|||+
T Consensus 71 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~a 142 (210)
T cd03269 71 RIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAA 142 (210)
T ss_pred cEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHH
Confidence 8999999999999999999999865433 123344556788999999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|
T Consensus 143 l~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 143 VIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999877899999999975 466789999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-47 Score=439.77 Aligned_cols=351 Identities=23% Similarity=0.335 Sum_probs=250.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..+..+++-++..+...|...+.+|+|+++.+....+++.+..........+.....+.........+.-..+.-++.|+
T Consensus 305 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~ 384 (694)
T TIGR01846 305 RVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGA 384 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44455666777888889999999999999999999888887776554433321111111100111111122334456888
Q ss_pred hHhhhhhhhhhhhhccccCCC----Cccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.+..|..+.. |...+. ..+.....+.+++.+. ......+.....|+++
T Consensus 385 ~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~-----~~~~~~~~~~~~i~~~ 459 (694)
T TIGR01846 385 HLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS-----AGLAALPELRGAITFE 459 (694)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC-----CCCCCCCCCCCeEEEE
Confidence 888888888888777664321 211111 1111111111111000 0000112223469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ ..++++|+|+|++|+|||.+||+|+||||||||+|+|+|.. + +.+|+|.+||.++.+ .+|+
T Consensus 460 ~vsf~y~------~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~-p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 460 NIRFRYA------PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-T-PQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred EEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCCceEEECCEehhhCCHHHHHH
Confidence 9999983 13457999999999999999999999999999999999854 3 458999999999853 5788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
.|+||+|++.+|+. |++|||.++. + ..+.++..+ .+++.++. |+++.||.+|+. ..+||||||||+
T Consensus 532 ~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~~i~~a~~~~~l~~~i~~--lp~gl~t~i~~~-g~~LSgGq~qri 602 (694)
T TIGR01846 532 QMGVVLQENVLFSR-SIRDNIALCN----P-GAPFEHVIHAAKLAGAHDFISE--LPQGYNTEVGEK-GANLSGGQRQRI 602 (694)
T ss_pred hCeEEccCCeehhh-hHHHHHhcCC----C-CCCHHHHHHHHHHcChHHHHHh--CcCccCcEecCC-CCCCCHHHHHHH
Confidence 99999999999975 9999998752 1 123332222 22333433 466789998765 467999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+++|+|||||||||+||+.++..+.+.|+++. .++|+|++||+++. .+.||+|++|++|++++.|++++++
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELL 679 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999985 58999999999864 4679999999999999999999986
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
+
T Consensus 680 ~ 680 (694)
T TIGR01846 680 A 680 (694)
T ss_pred H
Confidence 4
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-45 Score=366.84 Aligned_cols=216 Identities=30% Similarity=0.473 Sum_probs=183.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|++++|... ...+++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++. ..++
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~-~~~~ 73 (220)
T cd03293 1 LEVRNVSKTYGGG----GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVT-GPGP 73 (220)
T ss_pred CeEEEEEEEcCCC----CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECc-cccC
Confidence 4789999998210 011579999999999999999999999999999999999653 46899999999875 3467
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++||+|++.+++.+||+||+.++...+ ........+++.++++.++|.+..++. +..||||||||++||||
T Consensus 74 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~la~a 145 (220)
T cd03293 74 DRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY-----PHQLSGGMRQRVALARA 145 (220)
T ss_pred cEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 8999999999999899999999875432 123344456788999999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEc--CCeEEEecChH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (640)
|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.+.||++++|+ +|++++.++.+
T Consensus 146 l~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 146 LAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999865 4899999999975 4678899999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=349.73 Aligned_cols=214 Identities=25% Similarity=0.454 Sum_probs=186.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|.+++|.|+|.. .==..+++|++||++||+||||||||||||+|+|... |.+|+|++||++... ..
T Consensus 2 l~L~~V~~~y~~----------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~ 69 (231)
T COG3840 2 LALDDVRFSYGH----------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPA 69 (231)
T ss_pred ccccceEEeeCc----------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcc
Confidence 567899999821 2245889999999999999999999999999999654 568999999999753 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
.|-++++||+.+||.++||.+|+.++.. |.-.-.++.+++++.++..+||..+.+.. +.+|||||||||++|
T Consensus 70 ~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RL-----P~~LSGGqRQRvALA 141 (231)
T COG3840 70 ERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRL-----PGELSGGQRQRVALA 141 (231)
T ss_pred cCChhhhhhccccchhhhhhhhhcccCC---cccccCHHHHHHHHHHHHHhChhhHhhhC-----ccccCchHHHHHHHH
Confidence 7889999999999999999999998853 22222456677899999999999887754 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+++-+||+||||+|+|||.-+.+++.++.++++ ++.|++++||+|++ +.+++|+++++++|||.+.|+.++..
T Consensus 142 RclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~D-a~~ia~~~~fl~~Gri~~~g~~~~~~ 218 (231)
T COG3840 142 RCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPED-AARIADRVVFLDNGRIAAQGSTQELL 218 (231)
T ss_pred HHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHHhhhceEEEeCCEEEeeccHHHHh
Confidence 999999999999999999999999999999999985 48899999999875 78999999999999999999988865
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=366.64 Aligned_cols=216 Identities=29% Similarity=0.496 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++|. ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 l~~~~l~~~~~------~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (220)
T cd03263 1 LQIRNLTKTYK------KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKA 72 (220)
T ss_pred CEEEeeEEEeC------CCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHH
Confidence 47899999982 112679999999999999999999999999999999999643 468999999998742 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++||+|++.+++.+||+||+.+..... .....+..++++++++.++|.+..++. +..||||||||++|
T Consensus 73 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 144 (220)
T cd03263 73 ARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR-----ARTLSGGMKRKLSL 144 (220)
T ss_pred HhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhCh-----hhhCCHHHHHHHHH
Confidence 5677999999999998999999999875432 123344456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|++++.|+++++
T Consensus 145 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 145 AIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999876 699999999976 46678999999999999999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=369.61 Aligned_cols=217 Identities=26% Similarity=0.441 Sum_probs=183.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCCh-
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~~- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~ 72 (227)
T cd03260 1 IELRDLNVYY--------GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72 (227)
T ss_pred CEEEEEEEEc--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhc
Confidence 4789999998 345799999999999999999999999999999999996511 3568999999998642
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++|++|++.++ .+||+||+.++...+. .....+.++++.++++.+||.+..+..+. +.+|||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~ 146 (227)
T cd03260 73 DVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQ 146 (227)
T ss_pred chHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHH
Confidence 2467899999999888 7899999998754321 11222345678889999999876554320 36899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+.++||++++|++|++++.|++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLVEFGPT 224 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999999999999999876 99999999975 46788999999999999999987
Q ss_pred HH
Q 006571 381 SE 382 (640)
Q Consensus 381 ~~ 382 (640)
++
T Consensus 225 ~~ 226 (227)
T cd03260 225 EQ 226 (227)
T ss_pred cc
Confidence 65
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=378.20 Aligned_cols=232 Identities=27% Similarity=0.465 Sum_probs=191.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ....+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13637 2 SIKIENLTHIYMEG---TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKV 76 (287)
T ss_pred EEEEEEEEEECCCC---CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCc
Confidence 38999999998311 0112579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCccCCcCCH
Q 006571 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSG 298 (640)
..+++||||+|++ .++ ..||+||+.|+.... ..+.++..+++.++++.+||. +..++ .++.|||
T Consensus 77 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~~LSg 147 (287)
T PRK13637 77 KLSDIRKKVGLVFQYPEYQLF-EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDK-----SPFELSG 147 (287)
T ss_pred cHHHHhhceEEEecCchhccc-cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccC-----CcccCCH
Confidence 3467899999997 345 479999999875432 245566667889999999996 44443 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~~~ 226 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCELQ 226 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865 899999999965 46688999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCC
Q 006571 378 GKASEAMA---YFSSIGCSPQ 395 (640)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~ 395 (640)
|+++++.+ .+...|+.+|
T Consensus 227 g~~~~~~~~~~~~~~~~~~~~ 247 (287)
T PRK13637 227 GTPREVFKEVETLESIGLAVP 247 (287)
T ss_pred CCHHHHHhCHHHHHHcCCCCC
Confidence 99998753 2334455443
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=371.10 Aligned_cols=220 Identities=29% Similarity=0.481 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 71 (241)
T cd03256 1 IEVENLSKTYP-------NGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGK 71 (241)
T ss_pred CEEeeEEEecC-------CccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHh
Confidence 46899999882 12579999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccC-----CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
..++.++|++|++.+++.+||+||+.++..... ..........+++.++++.++|.+..++ .+..||
T Consensus 72 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 146 (241)
T cd03256 72 ALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQ-----RADQLS 146 (241)
T ss_pred HHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCC-----CcccCC
Confidence 245679999999999998999999987642110 0011122345668889999999765554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++
T Consensus 147 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~i~~ 225 (241)
T cd03256 147 GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGRIVF 225 (241)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4777999999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 226 ~~~~~~~~ 233 (241)
T cd03256 226 DGPPAELT 233 (241)
T ss_pred ecCHHHhh
Confidence 99988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-45 Score=364.49 Aligned_cols=214 Identities=30% Similarity=0.518 Sum_probs=183.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++|..+ .+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 2 l~~~~v~~~~~~~----~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 75 (218)
T cd03266 2 ITADALTKRFRDV----KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAE 75 (218)
T ss_pred eEEEEEEEecCCC----CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHH
Confidence 7899999998311 011279999999999999999999999999999999999543 568999999998753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..+.. +..||||||||++|
T Consensus 76 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 147 (218)
T cd03266 76 ARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR-----VGGFSTGMRQKVAI 147 (218)
T ss_pred HHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhh-----hhhcCHHHHHHHHH
Confidence 5678999999999999999999998865432 223445566788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|++++.|
T Consensus 148 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 148 ARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999877999999999975 577889999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=428.05 Aligned_cols=348 Identities=21% Similarity=0.266 Sum_probs=247.8
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.++..++..+...|.+.+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777888899999999999999999988888887665443332221111111101111111122333455788
Q ss_pred hHhhhhhhhhhhhhccccCCC----Ccccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
.++..|..+.|.++++..+.. |...+ +..+.....+.+++.+. .....+.....|+++
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~------~~~~~~~~~~~I~~~ 317 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKD------GSEPVPEGRGELDVN 317 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC------CCCCCCCCCCcEEEE
Confidence 888888888888777664332 11111 11111111111110000 000011112359999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
|++|+|+ ..++++|+|+|++++||++++|+||||||||||+++|+|.. + +.+|+|.+||+++.+ .+++
T Consensus 318 ~v~~~y~------~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~-p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 318 IRQFTYP------QTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-D-VSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred EEEEECC------CCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-C-CCCCEEEECCEEHhhCCHHHHHh
Confidence 9999983 12457999999999999999999999999999999999854 3 468999999998753 5688
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.++||+|++.+|+. |++|||.++. + ..++++. .+.++.. .++++.||.+|+. ...|||||||
T Consensus 390 ~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~~----~~~~~~~~l~~~i~~lp~gl~t~~~~~-g~~LSgGq~q 458 (569)
T PRK10789 390 RLAVVSQTPFLFSD-TVANNIALGR----P-DATQQEI----EHVARLASVHDDILRLPQGYDTEVGER-GVMLSGGQKQ 458 (569)
T ss_pred heEEEccCCeeccc-cHHHHHhcCC----C-CCCHHHH----HHHHHHcCCHHHHHhCcCcccceecCC-CCcCCHHHHH
Confidence 89999999999975 9999998752 1 1233222 2222222 4567789988765 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+++|+||||||||++||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|++|++++.|++++
T Consensus 459 Ri~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~i~~l~~G~i~~~g~~~~ 535 (569)
T PRK10789 459 RISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQ 535 (569)
T ss_pred HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCEEEEEeCCEEEEecCHHH
Confidence 9999999999999999999999999999999999999875 58999999999853 47799999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 536 l~~ 538 (569)
T PRK10789 536 LAQ 538 (569)
T ss_pred HHH
Confidence 864
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=363.36 Aligned_cols=210 Identities=27% Similarity=0.505 Sum_probs=181.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (213)
T cd03301 1 VELENVTKRF--------GNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPK 70 (213)
T ss_pred CEEEeeEEEE--------CCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcc
Confidence 4789999998 34579999999999999999999999999999999999653 468999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.++.... .....+.++++.++++.+||.+..+.. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr~~la 142 (213)
T cd03301 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRK-----PKQLSGGQRQRVALG 142 (213)
T ss_pred cceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCC-----hhhCCHHHHHHHHHH
Confidence 467999999999998899999999875432 123444556788899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.|
T Consensus 143 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 143 RAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999864 899999999975 467889999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=381.33 Aligned_cols=217 Identities=25% Similarity=0.459 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~ 71 (301)
T TIGR03522 2 SIRVSSLTKLY--------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPK 71 (301)
T ss_pred EEEEEEEEEEE--------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChH
Confidence 38999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++. ++.||||||||++
T Consensus 72 ~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~ 143 (301)
T TIGR03522 72 EVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKK-----IGQLSKGYRQRVG 143 (301)
T ss_pred HHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCc-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876543 223444556788999999998877764 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||||++|++|++++.|+++++..
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 221 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDELSA 221 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999865 799999999975 5788999999999999999999999865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=369.79 Aligned_cols=216 Identities=30% Similarity=0.547 Sum_probs=186.6
Q ss_pred EEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 150 LKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
++++||+++| ++ +.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 70 (242)
T cd03295 1 IEFENVTKRY--------GGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDP 70 (242)
T ss_pred CEEEEEEEEe--------CCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCCh
Confidence 4689999998 23 579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc--cccccccCccCCcCCHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER--CQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+||+||+.++.... ....++..+++.++++.++|.+ ..++ .+..|||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~~LS~G~~q 142 (242)
T cd03295 71 VELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADR-----YPHELSGGQQQ 142 (242)
T ss_pred HHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhc-----ChhhCCHHHHH
Confidence 34668999999999999899999999875432 1234445567889999999975 4443 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||+|++|++|++++.|+++
T Consensus 143 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 143 RVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999864 899999999975 467889999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 222 ~~~ 224 (242)
T cd03295 222 EIL 224 (242)
T ss_pred HHH
Confidence 764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=368.63 Aligned_cols=217 Identities=29% Similarity=0.501 Sum_probs=187.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (240)
T PRK09493 2 IEFKNVSKHF--------GPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVD 71 (240)
T ss_pred EEEEeEEEEE--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChh
Confidence 7899999998 24579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+||+||+.++..... .....+..+++.++++.+||++..+.. +..||||||||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qr 144 (240)
T PRK09493 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQR 144 (240)
T ss_pred HHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHH
Confidence 346679999999999998999999988642111 123444556788999999997666643 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 145 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (240)
T PRK09493 145 VAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDPQVL 223 (240)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 46788999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 224 ~ 224 (240)
T PRK09493 224 I 224 (240)
T ss_pred h
Confidence 4
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=427.92 Aligned_cols=344 Identities=19% Similarity=0.249 Sum_probs=235.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccce-eeeccccccceecchhchh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTH-IRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g 88 (640)
..+..+++..+..+...+...+.+++|+++.+....+++.+...+......+.....+.. .........-+.+.-+..+
T Consensus 192 ~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (592)
T PRK10790 192 IVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLF 271 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666777778888899999999999987777776655443332211000000000 0000001111111111122
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+. ...|..+.|.+..+..+. .|...+ +..+..+..+.+.. +.. .. ..+.....+++
T Consensus 272 ~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~----~~~-~~--~~~~~~~~i~~ 343 (592)
T PRK10790 272 GF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQ----QYG-ND--DRPLQSGRIDI 343 (592)
T ss_pred HH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----cCC-CC--ccCCCCCeEEE
Confidence 22 345555666666554322 111111 11111111111100 000 00 01111235999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .++++|+|+|++|++||.+||+|+||||||||+|+|+|. ++ +.+|+|.+||.++.+ .++
T Consensus 344 ~~v~f~y~-------~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~idg~~i~~~~~~~l~ 414 (592)
T PRK10790 344 DNVSFAYR-------DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-YP-LTEGEIRLDGRPLSSLSHSVLR 414 (592)
T ss_pred EEEEEEeC-------CCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-cC-CCCceEEECCEEhhhCCHHHHH
Confidence 99999983 235699999999999999999999999999999999985 43 458999999999853 578
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (640)
++|+||+|++.+|++ |++|||.++. ..+++ ++.++++..| |+++.||.+|.. ...||||||
T Consensus 415 ~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d~----~i~~a~~~~gl~~~i~~lp~Gldt~i~e~-g~~LSGGqr 482 (592)
T PRK10790 415 QGVAMVQQDPVVLAD-TFLANVTLGR------DISEE----QVWQALETVQLAELARSLPDGLYTPLGEQ-GNNLSVGQK 482 (592)
T ss_pred hheEEEccCCccccc-hHHHHHHhCC------CCCHH----HHHHHHHHcCcHHHHHhccccccccccCC-CCCCCHHHH
Confidence 999999999999986 9999999863 12222 2444444444 467789998764 457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|+||+||||||+||+.++..|.+.|+++.+ ++|+|++||+++ ....||+|++|++|++++.|+++
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 799999999985 45779999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++++
T Consensus 560 ~L~~ 563 (592)
T PRK10790 560 QLLA 563 (592)
T ss_pred HHHh
Confidence 9863
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=382.73 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=183.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---hccCcEEEEccCCCCCCCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lT 245 (640)
++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++.. ..++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 4579999999999999999999999999999999999653 568999999998743 34678999999999999999
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
|+||+.+.+..+ ..+..+..++++++++.+||.+..++. ++.|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRP-----VGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999876543 233445566788999999998777664 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAY 386 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~ 386 (640)
||+.++..+.+.|++++++|+|||++||++. ++.++||+|++|++|++++.|+++++..-
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 9999999999999999877999999999975 57789999999999999999999988653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=369.94 Aligned_cols=218 Identities=30% Similarity=0.510 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (250)
T PRK11264 3 AIEVKNLVKKF--------HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARS 72 (250)
T ss_pred cEEEeceEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 24579999999999999999999999999999999999653 468999999988641
Q ss_pred ---------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ---------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ---------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
..++.++||+|++.+++.+||+||+.++..... .....+..+++.++++.+||.+..++ .+..|
T Consensus 73 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 145 (250)
T PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETS-----YPRRL 145 (250)
T ss_pred ccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhC-----ChhhC
Confidence 245679999999999988999999988543111 12334455678889999999876554 35789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++
T Consensus 146 S~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~ 224 (250)
T PRK11264 146 SGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGRIVE 224 (250)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4678899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 225 ~~~~~~~~ 232 (250)
T PRK11264 225 QGPAKALF 232 (250)
T ss_pred eCCHHHHh
Confidence 99988764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-45 Score=365.53 Aligned_cols=214 Identities=28% Similarity=0.499 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (222)
T cd03224 1 LEVENLNAGY--------GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPH 70 (222)
T ss_pred CEEeeEEeec--------CCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHH
Confidence 4789999988 34579999999999999999999999999999999999653 568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCcCCHHHHHH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
. .++.++|++|++.+++.+|++||+.+...... ..+..+++.++++.+ ++.+..++ .++.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 140 (222)
T cd03224 71 ERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQ-----LAGTLSGGEQQM 140 (222)
T ss_pred HHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhC-----chhhCCHHHHHH
Confidence 1 25679999999999999999999998754321 122344566778777 46655554 346899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++
T Consensus 141 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (222)
T cd03224 141 LAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTAAEL 219 (222)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 220 ~ 220 (222)
T cd03224 220 L 220 (222)
T ss_pred h
Confidence 4
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=371.03 Aligned_cols=219 Identities=29% Similarity=0.464 Sum_probs=184.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR02315 2 LEVENLSKVYP-------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGK 72 (243)
T ss_pred eEEEeeeeecC-------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHH
Confidence 78999999881 14579999999999999999999999999999999999653 568999999998642
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-----CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.+++.++||+|++.+++.+||+||+.++...... ......+..+++.++++.+||.+..+. .+..||
T Consensus 73 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (243)
T TIGR02315 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQ-----RADQLS 147 (243)
T ss_pred HHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 2467899999999999999999999875321000 001123345678889999999766554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++
T Consensus 148 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~ 226 (243)
T TIGR02315 148 GGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGEIVF 226 (243)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999764 899999999976 4668899999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++++
T Consensus 227 ~~~~~~~ 233 (243)
T TIGR02315 227 DGAPSEL 233 (243)
T ss_pred cCCHHHh
Confidence 9998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=377.45 Aligned_cols=231 Identities=27% Similarity=0.457 Sum_probs=191.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|... ....+++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 3 l~~~~l~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~ 77 (290)
T PRK13634 3 ITFQKVEHRYQYK---TPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKN 77 (290)
T ss_pred EEEEEEEEEECCC---CcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECcccccc
Confidence 8999999999311 0012569999999999999999999999999999999999653 568999999998731
Q ss_pred ----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCH
Q 006571 226 ----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (640)
..++.||||+|++ .+++ .||.||+.|+.... ..+..+..++++++++.+||. +..++ .++.|||
T Consensus 78 ~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LSg 148 (290)
T PRK13634 78 KKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLAR-----SPFELSG 148 (290)
T ss_pred chHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhC-----CcccCCH
Confidence 3457899999986 4664 69999999875432 234555566789999999996 44454 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||||++|++|++++.
T Consensus 149 Gq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~i~~~ 227 (290)
T PRK13634 149 GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGTVFLQ 227 (290)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999975 57789999999999999999
Q ss_pred cChHHHHH---HHHhcCCCCC
Q 006571 378 GKASEAMA---YFSSIGCSPQ 395 (640)
Q Consensus 378 G~~~~~~~---~f~~~g~~~~ 395 (640)
|+++++.. .+...+..+|
T Consensus 228 g~~~~~~~~~~~~~~~~~~~~ 248 (290)
T PRK13634 228 GTPREIFADPDELEAIGLDLP 248 (290)
T ss_pred CCHHHHhcCHHHHHHCCCCCC
Confidence 99988742 2344455443
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=393.70 Aligned_cols=220 Identities=25% Similarity=0.451 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 3 ~L~~~nls~~y--------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~ 72 (402)
T PRK09536 3 MIDVSDLSVEF--------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSA 72 (402)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCH
Confidence 58999999998 35679999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++++|||+|++.+++.+||+||+.++....... ........++++++++.+||.+..++. +++||||||||
T Consensus 73 ~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-----~~~LSgGerQR 147 (402)
T PRK09536 73 RAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-----VTSLSGGERQR 147 (402)
T ss_pred HHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHH
Confidence 45678999999999988999999999864321100 001234456789999999998777654 47899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++|||+++|++|++++.|+++++
T Consensus 148 v~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~~ev 226 (402)
T PRK09536 148 VLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADV 226 (402)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999877899999999975 57789999999999999999999985
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
+
T Consensus 227 ~ 227 (402)
T PRK09536 227 L 227 (402)
T ss_pred h
Confidence 3
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=380.52 Aligned_cols=233 Identities=27% Similarity=0.419 Sum_probs=192.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|.|..+ ....+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|+++|.++..
T Consensus 20 ~~l~~~nl~~~y~~~---~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~~~~~ 94 (320)
T PRK13631 20 IILRVKNLYCVFDEK---QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYIGDKK 94 (320)
T ss_pred ceEEEEeEEEEeCCC---CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEccccc
Confidence 369999999998321 0113469999999999999999999999999999999999653 468999999987632
Q ss_pred ------------------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccc
Q 006571 226 ------------------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQ 284 (640)
Q Consensus 226 ------------------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 284 (640)
.+++.|+||+|++ .+|+ .||+||+.|+.... ..+.++..+++.++++.+||+ +..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~ 170 (320)
T PRK13631 95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDDSYL 170 (320)
T ss_pred ccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence 3467899999987 5776 49999999875322 234455566788999999996 344
Q ss_pred cccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
+. .+..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.+.||
T Consensus 171 ~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~~ad 244 (320)
T PRK13631 171 ER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVAD 244 (320)
T ss_pred cC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCC
Confidence 43 45789999999999999999999999999999999999999999999999877999999999975 4668899
Q ss_pred EEEEEcCCeEEEecChHHHHH---HHHhcCCCCC
Q 006571 365 KLILLGKGSLLYFGKASEAMA---YFSSIGCSPQ 395 (640)
Q Consensus 365 ~i~vL~~G~iv~~G~~~~~~~---~f~~~g~~~~ 395 (640)
+|++|++|++++.|+++++.. .+...|..+|
T Consensus 245 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 278 (320)
T PRK13631 245 EVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP 278 (320)
T ss_pred EEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence 999999999999999998742 2344555544
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-44 Score=373.57 Aligned_cols=218 Identities=24% Similarity=0.446 Sum_probs=188.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (269)
T PRK11831 7 LVDMRGVSFTR--------GNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSR 76 (269)
T ss_pred eEEEeCeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccCh
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.++|++|++.+++.+||.||+.++..... ........+++.++++.+||.+..++. +..||||||
T Consensus 77 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 149 (269)
T PRK11831 77 SRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLM-----PSELSGGMA 149 (269)
T ss_pred hhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 235679999999999999999999998643211 123444456678899999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|++|++++.|++
T Consensus 150 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~g~~ 228 (269)
T PRK11831 150 RRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAHGSA 228 (269)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999765 899999999965 47788999999999999999998
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 229 ~~~~ 232 (269)
T PRK11831 229 QALQ 232 (269)
T ss_pred HHHh
Confidence 8864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-44 Score=373.26 Aligned_cols=217 Identities=26% Similarity=0.414 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|+ ..+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 74 (274)
T PRK13647 4 IIEVEDLHFRYK-------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENE 74 (274)
T ss_pred eEEEEEEEEEeC-------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 589999999982 13469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++||+|++. .++..||.||+.|+.... .....+.++++.++++.+||.+..++. +..||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgG~~qr 146 (274)
T PRK13647 75 KWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKP-----PYHLSYGQKKR 146 (274)
T ss_pred HHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----hhhCCHHHHHH
Confidence 34678999999973 334579999999875422 234445556788999999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999999999877999999999965 46688999999999999999998754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=426.43 Aligned_cols=354 Identities=21% Similarity=0.286 Sum_probs=245.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.+..++...+..+...+...+.+++|+++.+....+++.+..........+.....+...........-..+.-+..|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (571)
T TIGR02203 182 SKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALF 261 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778899999999999999998888887766654433222111111111111111122223444567777
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
++..|..+.|.++.+..+.. |...+..... ....++.+.+...+.........+.....|+++||+|+|+
T Consensus 262 ~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~ 341 (571)
T TIGR02203 262 QAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYP 341 (571)
T ss_pred HHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCeEEEEEEEEEcC
Confidence 78778777887766654221 2111110000 0000011111111000000000111123699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q 236 (640)
..++++|+|+|++|++||.++|+|+||||||||+++|+|.. + +.+|+|.+||.++. +.++++++||+|
T Consensus 342 ------~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 413 (571)
T TIGR02203 342 ------GRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-E-PDSGQILLDGHDLADYTLASLRRQVALVSQ 413 (571)
T ss_pred ------CCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCeEEECCEeHHhcCHHHHHhhceEEcc
Confidence 12457999999999999999999999999999999999954 3 45899999999875 356888999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
++.+|+. |++|||.++. ++..+++ ++.++++..| |+++.||.+|+. ...||||||||++||||
T Consensus 414 ~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~~LSgGqrQRiaLARa 483 (571)
T TIGR02203 414 DVVLFND-TIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLDTPIGEN-GVLLSGGQRQRLAIARA 483 (571)
T ss_pred Ccccccc-cHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCcccceecCC-CCcCCHHHHHHHHHHHH
Confidence 9999975 9999999763 1122332 2333444333 466789999865 46799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
++++|+|++||||||+||+.++..+.+.|+++. +++|+|++||++. ..+.||+|++|++|+++..|+++++++
T Consensus 484 ll~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 484 LLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999999999999999999999999999999885 4799999999975 468899999999999999999999863
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=362.97 Aligned_cols=209 Identities=32% Similarity=0.539 Sum_probs=176.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|... ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~----~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 74 (218)
T cd03255 1 IELKNLSKTYGGG----GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEK 74 (218)
T ss_pred CeEeeeEEEecCC----CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchh
Confidence 4789999998210 011579999999999999999999999999999999999653 568999999998742
Q ss_pred ---h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ---S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
. .++.++|++|++.+++.+||+||+.++...+ ........+++.++++.+||.+..++. ++.||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 146 (218)
T cd03255 75 ELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHY-----PSELSGGQQ 146 (218)
T ss_pred HHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcC-----hhhcCHHHH
Confidence 1 2467999999999999999999999876432 122334456788999999998766543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++|++|++
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999987 58999999999764 54 8999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=359.85 Aligned_cols=206 Identities=32% Similarity=0.540 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 70 (208)
T cd03268 1 LKTNDLTKTY--------GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEA 70 (208)
T ss_pred CEEEEEEEEE--------CCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHH
Confidence 4789999998 24579999999999999999999999999999999999653 568999999998742 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++||+|++.+++.+||+||+.+....+ .. .+++++++++.++|.+..++. +..|||||||||+||
T Consensus 71 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (208)
T cd03268 71 LRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKK-----VKGFSLGMKQRLGIA 138 (208)
T ss_pred HhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhh-----HhhCCHHHHHHHHHH
Confidence 667999999999999999999999875432 11 234578889999998766653 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|
T Consensus 139 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 139 LALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999877899999999975 466789999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=372.39 Aligned_cols=228 Identities=24% Similarity=0.439 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|.. ...+.+|+|+||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13650 4 IIEVKNLTFKYKE-----DQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENV 76 (279)
T ss_pred eEEEEeEEEEcCC-----CCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 5899999999831 112469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++||+|++. +++.+||+|||.|+.... ..+.++..+++.++++.+||.+..+.. +..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qr 148 (279)
T PRK13650 77 WDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKERE-----PARLSGGQKQR 148 (279)
T ss_pred HHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHH
Confidence 35678999999973 666789999999875432 244555667789999999998766653 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++.. + ..||+|++|++|+++..|++++
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~~~~ 226 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTSTPRE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 9999999999754 5 5799999999999999999988
Q ss_pred HHH---HHHhcCCC
Q 006571 383 AMA---YFSSIGCS 393 (640)
Q Consensus 383 ~~~---~f~~~g~~ 393 (640)
+.. .+...|+.
T Consensus 227 ~~~~~~~~~~~~~~ 240 (279)
T PRK13650 227 LFSRGNDLLQLGLD 240 (279)
T ss_pred HHcChHHHHHcCCC
Confidence 753 23344554
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=366.13 Aligned_cols=216 Identities=25% Similarity=0.454 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-----ccEEEECCEeC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-----GGSITYNDHPY 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~-----~G~I~~~G~~~ 223 (640)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +. +|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~~~~~~G~i~~~g~~~ 70 (247)
T TIGR00972 1 AIEIENLNLFY--------GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND--LVPGVRIEGKVLFDGQDI 70 (247)
T ss_pred CEEEEEEEEEE--------CCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCcCCCCceEEEECCEEc
Confidence 37899999998 23569999999999999999999999999999999999653 33 89999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFV 293 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~ 293 (640)
.. ..++.++|++|++.+++ +|++||+.+....+. ..+..+..+++.++++.+||. +..++ .+
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~ 142 (247)
T TIGR00972 71 YDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHD-----SA 142 (247)
T ss_pred cccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhC-----Cc
Confidence 42 24678999999999998 899999998754321 123344556788999999997 44443 45
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+
T Consensus 143 ~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~ 220 (247)
T TIGR00972 143 LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYDGE 220 (247)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999977 489999999975 4678899999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 221 i~~~~~~~~~~ 231 (247)
T TIGR00972 221 LVEYGPTEQIF 231 (247)
T ss_pred EEEeCCHHHHH
Confidence 99999988864
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-44 Score=362.43 Aligned_cols=216 Identities=31% Similarity=0.547 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 2 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~ 71 (236)
T TIGR03864 2 LEVAGLSFAY--------GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRA 71 (236)
T ss_pred EEEEeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChh
Confidence 7899999998 34579999999999999999999999999999999999653 568999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+|++||+.+....+ .....+..+.+.++++.+||.+..++. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~l 143 (236)
T TIGR03864 72 ALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDK-----VRELNGGHRRRVEI 143 (236)
T ss_pred hhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCC-----hhhCCHHHHHHHHH
Confidence 3457999999999888899999998865432 123344556788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .||++++|++|++++.|+++++.+
T Consensus 144 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~~~~ 221 (236)
T TIGR03864 144 ARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAELRG 221 (236)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999985 58999999999764 44 599999999999999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-46 Score=355.18 Aligned_cols=219 Identities=26% Similarity=0.496 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|..+|+.++| ++++|+++||++|++||+++++|||||||||.+.++.|... +++|.|.+||.+++.
T Consensus 4 ~L~a~~l~K~y--------~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm 73 (243)
T COG1137 4 TLVAENLAKSY--------KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPM 73 (243)
T ss_pred EEEehhhhHhh--------CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCCh
Confidence 58899999998 56789999999999999999999999999999999999654 569999999999864
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..|.-|||+||++.+|..|||+|||......+.. +....+++.+++++|++|+|.+.++.. ...||||||+|
T Consensus 74 ~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~-----a~sLSGGERRR 147 (243)
T COG1137 74 HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSK-----AYSLSGGERRR 147 (243)
T ss_pred HHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCc-----ccccccchHHH
Confidence 2355699999999999999999999988776532 223456667789999999999998864 35799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|..|+++-|... +...+|||.+++++|+++..|+++++
T Consensus 148 ~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei 226 (243)
T COG1137 148 VEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEI 226 (243)
T ss_pred HHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHH
Confidence 99999999999999999999999999999999999999999999999999976 46799999999999999999999998
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 227 ~ 227 (243)
T COG1137 227 V 227 (243)
T ss_pred h
Confidence 6
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=365.73 Aligned_cols=218 Identities=27% Similarity=0.526 Sum_probs=188.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (241)
T PRK10895 3 TLTAKNLAKAY--------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPL 72 (241)
T ss_pred eEEEeCcEEEe--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 58999999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+||.||+.+...... ....++.+.+++++++.+||.+..+. .++.||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 145 (241)
T PRK10895 73 HARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDS-----MGQSLSGGERRR 145 (241)
T ss_pred HHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhc-----chhhCCHHHHHH
Confidence 235679999999999998999999987643221 12334455678899999999765554 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++|++++.|+++++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 224 (241)
T PRK10895 146 VEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTPTEI 224 (241)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCHHHH
Confidence 99999999999999999999999999999999999999877999999999975 57789999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 225 ~ 225 (241)
T PRK10895 225 L 225 (241)
T ss_pred h
Confidence 4
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-46 Score=424.40 Aligned_cols=355 Identities=22% Similarity=0.303 Sum_probs=242.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..+..+++..+.++...+.....+++|.++.+..+.+++.+..........+.....+.....+..+..-..+.-+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (588)
T PRK13657 183 GQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGA 262 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667788888899999999999999998877777766554443322111111111111111222222333445677
Q ss_pred hHhhhhhhhhhhhhccccCC----CCccccccCCC------CCCCCCccccccccC--CCCCCCCCCCCCeeEEEEeEEE
Q 006571 90 ALSRASSASLGLSFSFTGFT----MPPDEIADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTY 157 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~vs~ 157 (640)
.++..|..+.|.++.+..+. .|...+..... ....++.+-++..+. ..+.....+.....++++||+|
T Consensus 263 ~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf 342 (588)
T PRK13657 263 ALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSF 342 (588)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEE
Confidence 77777777777766554321 11111110000 000000000000000 0000000111123699999999
Q ss_pred EEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEE
Q 006571 158 KVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGF 233 (640)
Q Consensus 158 ~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~y 233 (640)
+|+ +++++|+|+|++++|||+++|+|+||||||||+|+|+|.. + +.+|+|.+||.++.+ .+|++|+|
T Consensus 343 ~y~-------~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~-p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 343 SYD-------NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-D-PQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EeC-------CCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-C-CCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 983 2246999999999999999999999999999999999854 3 468999999998853 57889999
Q ss_pred EccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 234 VTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 234 V~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|+|++.+|+. |++|||.++. + ..++++..+. +++.++ .+++..||.+|.. ...||||||||++|||
T Consensus 414 v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~i~~al~~~~l~~~i~--~lp~gldt~i~~~-g~~LSgGq~QRialAR 484 (588)
T PRK13657 414 VFQDAGLFNR-SIEDNIRVGR----P-DATDEEMRAAAERAQAHDFIE--RKPDGYDTVVGER-GRQLSGGERQRLAIAR 484 (588)
T ss_pred EecCcccccc-cHHHHHhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hCcccccchhcCC-CCCCCHHHHHHHHHHH
Confidence 9999999975 9999999862 1 1233322221 222333 2467788988764 4679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+++|+|++||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.||+|++|++|++++.|+++++++
T Consensus 485 all~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~G~i~~~g~~~~l~~ 558 (588)
T PRK13657 485 ALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDNGRVVESGSFDELVA 558 (588)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEECCEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999875 4799999999975 467899999999999999999999864
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=367.21 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 74 (257)
T PRK10619 5 KLNVIDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRD 74 (257)
T ss_pred cEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccc
Confidence 58999999998 34579999999999999999999999999999999999653 468999999987631
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-cccccC
Q 006571 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGG 290 (640)
Q Consensus 226 --------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~ 290 (640)
.+++.++||+|++.+++.+||+||+.++..... .....+.++++.++++.+||.+.. +.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 148 (257)
T PRK10619 75 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGK---- 148 (257)
T ss_pred cccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhC----
Confidence 345789999999999999999999987542111 123445566788999999997643 33
Q ss_pred ccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|+
T Consensus 149 -~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~ 226 (257)
T PRK10619 149 -YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLH 226 (257)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE
Confidence 35789999999999999999999999999999999999999999999999877999999999975 4667899999999
Q ss_pred CCeEEEecChHHHH
Q 006571 371 KGSLLYFGKASEAM 384 (640)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 227 ~G~i~~~~~~~~~~ 240 (257)
T PRK10619 227 QGKIEEEGAPEQLF 240 (257)
T ss_pred CCEEEEeCCHHHhh
Confidence 99999999988764
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=380.25 Aligned_cols=228 Identities=24% Similarity=0.425 Sum_probs=191.7
Q ss_pred eeEEEEeEEEEEeeccc-----cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 148 IYLKFTDVTYKVILKGM-----TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~-----~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
..|+++||+++|..... ...+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +.+|+|.++|++
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~ 84 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKD 84 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEE
Confidence 36999999999843110 00123579999999999999999999999999999999999653 468999999998
Q ss_pred CCh-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 006571 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (640)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (640)
+.. .++++|+||+|++ .++|.+||.|||.+......+ ..++++.++++.++++.++|. +..+ .+
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~-----~~ 158 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLIN-----RY 158 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhc-----CC
Confidence 742 2467899999998 689899999999987543211 235566677888999999994 3333 45
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+.+|||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.++ |.|+|++|||+. .+.++||+|++|++
T Consensus 159 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~ 237 (331)
T PRK15079 159 PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL 237 (331)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 6899999999999999999999999999999999999999999999999864 899999999975 46778999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 238 G~ive~g~~~~i~ 250 (331)
T PRK15079 238 GHAVELGTYDEVY 250 (331)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=384.92 Aligned_cols=207 Identities=26% Similarity=0.460 Sum_probs=183.7
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc----cCcEEEEccCCC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL----KSKIGFVTQDDV 239 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~----~~~i~yV~Q~~~ 239 (640)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|... +++|+|.++|+++.. .+ ++.++||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 45679999999999999999999999999999999999653 568999999998753 23 678999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 006571 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (640)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 319 (640)
+||++||+||+.|+.... ..++++..+++.++++.+||++..++ ++..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~-----~p~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHR-----YPDELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhC-----ChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 23456677789999999999876665 4578999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||++||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR 219 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence 9999999999999999999999764 899999999975 4778999999999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=358.68 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=177.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (214)
T TIGR02673 2 IEFHNVSKAYP-------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGR 72 (214)
T ss_pred EEEEeeeEEeC-------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHH
Confidence 78999999982 23579999999999999999999999999999999999653 468999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++|++|++.+++.+||.||+.+....+ .......++++.++++.++|.+..++. +..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 144 (214)
T TIGR02673 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQ 144 (214)
T ss_pred HHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHH
Confidence 24578999999999999899999999875432 123344456788999999998665543 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||++++|++|+
T Consensus 145 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 145 RVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999877999999999975 5777899999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=375.09 Aligned_cols=221 Identities=25% Similarity=0.461 Sum_probs=186.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++|..+. .....+|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~---~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (305)
T PRK13651 2 QIKVKNIVKIFNKKL---PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKK 76 (305)
T ss_pred EEEEEEEEEEECCCC---CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceecccccc
Confidence 389999999983211 112469999999999999999999999999999999999653 46899999987541
Q ss_pred ------------------------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc
Q 006571 225 ------------------------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278 (640)
Q Consensus 225 ------------------------~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l 278 (640)
...++.||||+|++ .++ ..||+|||.|+.... ..+.++..+++.++++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~ 152 (305)
T PRK13651 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELV 152 (305)
T ss_pred cccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHc
Confidence 13467899999985 455 469999999876432 245556677889999999
Q ss_pred CCC-ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 279 GLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 279 gL~-~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
||. +..++ .+..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.
T Consensus 153 gL~~~~~~~-----~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~- 226 (305)
T PRK13651 153 GLDESYLQR-----SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD- 226 (305)
T ss_pred CCChhhhhC-----ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-
Confidence 996 45554 45789999999999999999999999999999999999999999999999877999999999965
Q ss_pred HHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 358 RLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
.+.++||||++|++|++++.|+++++.
T Consensus 227 ~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 227 NVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 467899999999999999999998875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-44 Score=361.14 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=182.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 78 (233)
T PRK11629 5 LLQCDNLCKRYQEG----SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSS 78 (233)
T ss_pred eEEEEeEEEEcCCC----CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCH
Confidence 59999999998311 112579999999999999999999999999999999999653 568999999998742
Q ss_pred ----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.. ++.++|++|++.+++.+||+||+.+..... .....+.++++.++++.+||.+..++. +..|||||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~ 150 (233)
T PRK11629 79 AAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSELSGGE 150 (233)
T ss_pred HHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 12 257999999999999999999999865432 123344556788999999998766543 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++.. + ..+|++++|++|++++.|+
T Consensus 151 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 151 RQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999999975 58999999999754 4 4468999999999998876
Q ss_pred h
Q 006571 380 A 380 (640)
Q Consensus 380 ~ 380 (640)
.
T Consensus 229 ~ 229 (233)
T PRK11629 229 L 229 (233)
T ss_pred c
Confidence 3
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=372.11 Aligned_cols=218 Identities=29% Similarity=0.523 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++|. +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 5 ~l~~~~l~~~~~-------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~ 75 (283)
T PRK13636 5 ILKVEELNYNYS-------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRK 75 (283)
T ss_pred eEEEEeEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcc
Confidence 699999999982 23569999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 225 --KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..+++.+||++|++. ++ ..||+||+.++.... ..+..+..++++++++.+||.+..++ .++.|||||
T Consensus 76 ~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~~~LS~G~ 146 (283)
T PRK13636 76 GLMKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK-----PTHCLSFGQ 146 (283)
T ss_pred hHHHHHhhEEEEecCcchhhc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC-----CcccCCHHH
Confidence 135678999999973 44 479999999865432 23445556678899999999876665 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~~~g~ 225 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVILQGN 225 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 899999999975 4667899999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 226 ~~~~~~ 231 (283)
T PRK13636 226 PKEVFA 231 (283)
T ss_pred HHHHhc
Confidence 988754
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-44 Score=359.93 Aligned_cols=221 Identities=44% Similarity=0.741 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh-h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~~~-~ 226 (640)
.++|+||+++|+.. +..+++|+|+||+|++||+++|+||||||||||+|+|+|.+.. .+.+|+|.++|+++.. .
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~ 78 (226)
T cd03234 3 VLPWWDVGLKAKNW----NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78 (226)
T ss_pred cceeecceeeeecC----ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHH
Confidence 47899999998421 1146899999999999999999999999999999999996531 1468999999998753 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH-HHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID-VINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.++|++|++.+++.+||+||+.++.....+..........++++ .++.+++.+..++ .++.||||||||++
T Consensus 79 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~ 153 (226)
T cd03234 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGN-----LVKGISGGERRRVS 153 (226)
T ss_pred hcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcc-----cccCcCHHHHHHHH
Confidence 56789999999999999999999998765432222222233334555 7888888765554 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.++||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998778999999999755688999999999999999875
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=363.83 Aligned_cols=215 Identities=24% Similarity=0.431 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 74 (237)
T PRK11614 5 MLSFDKVSAHY--------GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQT 74 (237)
T ss_pred EEEEEeEEEee--------CCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCH
Confidence 69999999998 34579999999999999999999999999999999999643 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+|+.+||.||+.++.... ......+.+.++++.+ ++.+..++ .+..|||||||
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~q 144 (237)
T PRK11614 75 AKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQ-----RAGTMSGGEQQ 144 (237)
T ss_pred HHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhC-----chhhCCHHHHH
Confidence 24567999999999999899999998864221 1222334566777777 46554443 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||+|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|++++
T Consensus 145 rl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 145 MLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 999999999999999999999999999999999999999877999999999965 4778999999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 224 ~~ 225 (237)
T PRK11614 224 LL 225 (237)
T ss_pred Hh
Confidence 74
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=364.23 Aligned_cols=224 Identities=24% Similarity=0.396 Sum_probs=186.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 74 (250)
T PRK14247 3 KIEIRDLKVSF--------GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74 (250)
T ss_pred eEEEEeeEEEE--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc
Confidence 58999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.|+|++|++.+++.+||.||+.++...... .....+..+.+.++++.+||.+..+.. -+..+.+||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~ 152 (250)
T PRK14247 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDR-LDAPAGKLSGGQQ 152 (250)
T ss_pred CCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhh-hcCCcccCCHHHH
Confidence 3567899999999888889999999987542210 112344456788999999986421111 1234578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++. .+.+.||++++|++|++++.|+++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 230 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKGQIVEWGPTR 230 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999865 899999999976 466889999999999999999998
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 231 ~~~ 233 (250)
T PRK14247 231 EVF 233 (250)
T ss_pred HHH
Confidence 874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=358.27 Aligned_cols=208 Identities=30% Similarity=0.574 Sum_probs=179.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++| +++++|+|+||++++| +++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~--------~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (211)
T cd03264 1 LQLENLTKRY--------GKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQK 69 (211)
T ss_pred CEEEEEEEEE--------CCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHH
Confidence 4789999998 2357999999999999 999999999999999999999653 468999999987642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+|+.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||||++|
T Consensus 70 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 141 (211)
T cd03264 70 LRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKK-----IGSLSGGMRRRVGI 141 (211)
T ss_pred HHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCc-----hhhCCHHHHHHHHH
Confidence 4678999999999999999999999865432 123334456788899999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999976 589999999975 466789999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=372.24 Aligned_cols=222 Identities=23% Similarity=0.430 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ....+++|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~y~~~---~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (286)
T PRK13646 2 TIRFDNVSYTYQKG---TPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTK 76 (286)
T ss_pred EEEEEEEEEEECCC---CccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 38999999998311 0012569999999999999999999999999999999999653 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
.+++.||||+|++ .+++ .||.||+.|+.... ..+..+..+++.++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (286)
T PRK13646 77 DKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQ-----SPFQMS 147 (286)
T ss_pred cchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3567899999986 5676 59999999875432 234555667789999999996 45554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||+|++|++|++++
T Consensus 148 gGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~i~~ 226 (286)
T PRK13646 148 GGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGSIVS 226 (286)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4899999999975 4678899999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+++++..
T Consensus 227 ~g~~~~~~~ 235 (286)
T PRK13646 227 QTSPKELFK 235 (286)
T ss_pred ECCHHHHHh
Confidence 999988753
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=396.66 Aligned_cols=348 Identities=25% Similarity=0.326 Sum_probs=240.6
Q ss_pred HHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhc----hhhhHh
Q 006571 17 QLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVS----SGAALS 92 (640)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~ 92 (640)
+--|+-+.+-.|.-+-|||+-|+++.-|...|...+.+-...+.|....-+- .+-.|..+-..++. .++..+
T Consensus 393 ~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnf----LN~~Qn~Ii~lgll~gsll~aY~V 468 (790)
T KOG0056|consen 393 SWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNF----LNIVQNGIIGLGLLAGSLLCAYRV 468 (790)
T ss_pred hhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhhhhhHHhhhhheeeeee
Confidence 3345555666777788999999999888888876554322222210000000 11122222222222 233344
Q ss_pred hhhhhhhhhhhccccCC----CCcc----ccccCCCCCCCCCcc--cc-ccccC--CCCCCCCCCCCCeeEEEEeEEEEE
Q 006571 93 RASSASLGLSFSFTGFT----MPPD----EIADSKPFSDDDIPE--DI-EAGTR--ERPKFQTEPTLPIYLKFTDVTYKV 159 (640)
Q Consensus 93 ~~~~~~~g~~~~~~~~~----~~~~----~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~~~~~~l~~~~vs~~~ 159 (640)
..+....|...-|..|- +|.. ....-. -..-|.++ |+ +..+. +.|.-.........++|+||+|.|
T Consensus 469 t~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ-~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y 547 (790)
T KOG0056|consen 469 TEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQ-KNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAY 547 (790)
T ss_pred eeccccccceehHHHHHHHHhCchHHHHHHHHHHH-HhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEec
Confidence 45555666655554332 2211 000000 00011111 11 11111 111111111223479999999999
Q ss_pred eeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEc
Q 006571 160 ILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVT 235 (640)
Q Consensus 160 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~ 235 (640)
. ++|++|+||||++.||+.+||+||||+||||++++|- |+++. .+|.|.+||+|++. .+|+.||.||
T Consensus 548 ~-------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf-Rffdv-~sGsI~iDgqdIrnvt~~SLRs~IGVVP 618 (790)
T KOG0056|consen 548 D-------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF-RFFDV-NSGSITIDGQDIRNVTQSSLRSSIGVVP 618 (790)
T ss_pred C-------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHH-HHhhc-cCceEEEcCchHHHHHHHHHHHhcCccc
Confidence 3 5789999999999999999999999999999999999 67654 58999999999863 6899999999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~ 315 (640)
||..||.+ |+..||+|+..-...+.+..+.+.+.+++- .++++++++|.||.+..+ |||||||||+|||+++++|.
T Consensus 619 QDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHdr--Il~fPegY~t~VGERGLk-LSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 619 QDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHDR--ILQFPEGYNTRVGERGLK-LSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred Ccceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHHH--HhcCchhhhhhhhhcccc-cCCcchhhHHHHHHHhcCCc
Confidence 99999975 999999997432221122222233333333 367899999999987765 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|++|||.||+||..++..|...|.+++. ++|.|++.|++++ .-.+|.|+++++|+|++.|.|+|++.
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILvi~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILVISNGRIVERGRHEELLK 761 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEEEeCCeEeecCcHHHHHh
Confidence 9999999999999999999999999986 8999999999986 35699999999999999999999975
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=362.89 Aligned_cols=216 Identities=30% Similarity=0.491 Sum_probs=185.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (242)
T PRK11124 2 SIQLNGINCFY--------GAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred EEEEEeeEEEE--------CCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccc
Confidence 48899999998 24579999999999999999999999999999999999653 56899999999762
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
...++.++|++|++.+++.+||.||+.+.. ... .....+..+++.++++.+||++..++. +..||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS 143 (242)
T PRK11124 72 PSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRF-----PLHLS 143 (242)
T ss_pred cchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCC
Confidence 134678999999999999999999997532 211 123344456788999999998766653 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.++||++++|++|++++.
T Consensus 144 ~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 46678999999999999999
Q ss_pred cChHHH
Q 006571 378 GKASEA 383 (640)
Q Consensus 378 G~~~~~ 383 (640)
|+++++
T Consensus 223 ~~~~~~ 228 (242)
T PRK11124 223 GDASCF 228 (242)
T ss_pred CCHHHh
Confidence 998764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=357.56 Aligned_cols=207 Identities=34% Similarity=0.530 Sum_probs=177.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. +.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 71 (214)
T cd03292 1 IEFINVTKTYP-------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGR 71 (214)
T ss_pred CEEEEEEEEeC-------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHH
Confidence 46899999982 12579999999999999999999999999999999999643 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++.+++.+|++||+.+....+ ....++..+++.++++.+||++..++. +.+|||||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 143 (214)
T cd03292 72 AIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQ 143 (214)
T ss_pred HHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHH
Confidence 24578999999999999999999999875432 123444556788999999998766653 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|++|||||+.+|+++||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999777999999999975 46678999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=419.43 Aligned_cols=324 Identities=22% Similarity=0.265 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.++.++..++..+...|...+.+|+|+++.+....+++.+......+...+.....+...........-..+.-++.|+.
T Consensus 182 ~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 261 (529)
T TIGR02868 182 EVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGP 261 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667888889999999999999999999999888876665544433211111111011111111112233456777
Q ss_pred HhhhhhhhhhhhhccccCCC----Ccc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEe
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTD 154 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 154 (640)
++..|..+.|.+.++..+.. |.. ..+..+.....+.+++.+.... +.....+.....|+|+|
T Consensus 262 ~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~--~~~~~~~~~~~~I~~~~ 339 (529)
T TIGR02868 262 AVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRPEGVV--PAAGALGLGKPTLELRD 339 (529)
T ss_pred HHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCCCC--CCCcccCCCCceEEEEE
Confidence 77777777776666554321 111 1111111111111111100000 00000111223699999
Q ss_pred EEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---hccCcE
Q 006571 155 VTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKSKI 231 (640)
Q Consensus 155 vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i 231 (640)
|+|+|+ +++++|+|+|++|++||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++.+ ++|++|
T Consensus 340 vsf~Y~-------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~-p~~G~I~i~g~~i~~~~~~lr~~i 410 (529)
T TIGR02868 340 LSFGYP-------GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-LD-PLQGEVTLDGVSVSSLQDELRRRI 410 (529)
T ss_pred EEEecC-------CCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEEhhhHHHHHHhhe
Confidence 999983 234699999999999999999999999999999999984 44 468999999998763 567899
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 232 ~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+||+|++.+|+. |++|||.++. + ..++++..+. +++.++ .|+++.||.+|+.. ..||||||||++|
T Consensus 411 ~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e~i~~al~~a~l~~~i~--~lp~GldT~ige~G-~~LSGGQrQRiai 481 (529)
T TIGR02868 411 SVFAQDAHLFDT-TVRDNLRLGR----P-DATDEELWAALERVGLADWLR--SLPDGLDTVLGEGG-ARLSGGERQRLAL 481 (529)
T ss_pred EEEccCcccccc-cHHHHHhccC----C-CCCHHHHHHHHHHcCCHHHHH--hCcccccchhcccc-CcCCHHHHHHHHH
Confidence 999999999976 9999999863 1 2233322221 223333 35778899998754 5699999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
||||+++|+||+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus 482 ARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 482 ARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 999999999999999999999999999999999864 489999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=364.70 Aligned_cols=219 Identities=23% Similarity=0.368 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (640)
..|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+... +.+|+|.++|+++.
T Consensus 6 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~ 77 (254)
T PRK14273 6 AIIETENLNLFY--------TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIY 77 (254)
T ss_pred ceEEEeeeEEEe--------CCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecc
Confidence 369999999998 2456999999999999999999999999999999999965421 24899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC----ccccccccCccCC
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE----RCQDTMIGGSFVR 294 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~t~vg~~~~~ 294 (640)
...++.++||+|++.+++ +||+||+.++..... .......++++.++++.+++. +..++ .++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~ 149 (254)
T PRK14273 78 SNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNT-----NAL 149 (254)
T ss_pred cccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhC-----Ccc
Confidence 134678999999998885 899999998754321 112334456678888888873 23343 457
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++
T Consensus 150 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 150 SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFFLNGCI 227 (254)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 789999999976 46788999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
+..|+++++.
T Consensus 228 ~~~g~~~~~~ 237 (254)
T PRK14273 228 EEESSTDELF 237 (254)
T ss_pred EEeCCHHHHH
Confidence 9999998874
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-44 Score=365.23 Aligned_cols=217 Identities=31% Similarity=0.494 Sum_probs=186.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (252)
T TIGR03005 1 VRFSDVTKRF--------GILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGR 70 (252)
T ss_pred CEEEEEEEEe--------CCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 4789999998 24579999999999999999999999999999999999653 468999999987631
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006571 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (640)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (640)
.+++.++|++|++.+++.+||.||+.++.... .........+.+.++++.+|+.+..+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~ 143 (252)
T TIGR03005 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADH-----M 143 (252)
T ss_pred cccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhc-----C
Confidence 24678999999999999899999999864211 112344455678899999999776654 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||++++|++
T Consensus 144 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~ 222 (252)
T TIGR03005 144 PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK 222 (252)
T ss_pred hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999865 899999999975 46788999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 223 G~i~~~g~~~~~~ 235 (252)
T TIGR03005 223 GRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-44 Score=362.41 Aligned_cols=221 Identities=28% Similarity=0.356 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 72 (243)
T TIGR01978 1 LKIKDLHVSV--------EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD 72 (243)
T ss_pred CeEeeEEEEE--------CCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH
Confidence 4789999998 3457999999999999999999999999999999999964113568999999998742
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC---C-CccHHHHHHHHHHHHHHcCCCc-cccccccCccCC-cCCH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP---N-TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVSG 298 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~---~-~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LSG 298 (640)
. .+..++||+|++.+++.+|++||+.+....... . .....+..+++.++++.+||++ ..++. +. .|||
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS~ 147 (243)
T TIGR01978 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRS-----VNEGFSG 147 (243)
T ss_pred HhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccc-----cccCcCH
Confidence 2 234599999999999999999999876532110 0 1122334567889999999973 44433 34 5999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~ 377 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||++++|++|++++.
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~i~~~ 226 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGRIVKS 226 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999877899999999975 45566 899999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 227 g~~~~~~ 233 (243)
T TIGR01978 227 GDVELAK 233 (243)
T ss_pred cCHHHhc
Confidence 9987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=371.75 Aligned_cols=221 Identities=27% Similarity=0.434 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|..+ ....+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (287)
T PRK13641 2 SIKFENVDYIYSPG---TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETG 76 (287)
T ss_pred EEEEEEEEEEcCCC---CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 47899999998210 0012579999999999999999999999999999999999653 568999999998632
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
..++.++|++|++ .++ .+||.||+.++.... ....++..++++++++.+||. +..++ .++.||
T Consensus 77 ~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~~LS 147 (287)
T PRK13641 77 NKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISK-----SPFELS 147 (287)
T ss_pred cchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhC-----CcccCC
Confidence 2456799999997 455 579999999875432 234455566789999999996 45554 357899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus 148 gGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i~~~ 226 (287)
T PRK13641 148 GGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKLIKH 226 (287)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877999999999975 47789999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 227 g~~~~~~ 233 (287)
T PRK13641 227 ASPKEIF 233 (287)
T ss_pred CCHHHHh
Confidence 9998864
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=365.28 Aligned_cols=222 Identities=23% Similarity=0.400 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... ++.+|+|.++|+++.
T Consensus 11 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~ 82 (258)
T PRK14268 11 PQIKVENLNLWY--------GEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIY 82 (258)
T ss_pred eeEEEeeeEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcc
Confidence 369999999998 345799999999999999999999999999999999996532 136899999999863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. ..++.++|++|++.+++ +|++||+.+..... ..+.....+++.++++.+++.+...... +..+..|||
T Consensus 83 ~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSg 157 (258)
T PRK14268 83 EPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRL-KSPALSLSG 157 (258)
T ss_pred cccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhh-cCChhhCCH
Confidence 2 24677999999999998 89999999875432 1233444556888999998842211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|++|++++.|
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999965 799999999975 466889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 236 ~~~~~~ 241 (258)
T PRK14268 236 QTRQIF 241 (258)
T ss_pred CHHHHh
Confidence 998863
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=363.89 Aligned_cols=224 Identities=23% Similarity=0.390 Sum_probs=185.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~--~~~G~I~~~G~~~ 223 (640)
|+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++
T Consensus 4 ~~~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i 75 (253)
T PRK14242 4 PPKMEARGLSFFY--------GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENI 75 (253)
T ss_pred CcEEEEeeeEEEE--------CCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEc
Confidence 3469999999998 24569999999999999999999999999999999999642 12 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .+++.++|++|++.+|+ .||+||+.++...+. ....+...+++.++++.++|.+...... +..+..||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 151 (253)
T PRK14242 76 YDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HESALGLS 151 (253)
T ss_pred cccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCC
Confidence 42 34678999999999998 599999998754321 1123344567888899999854221111 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||+|++|++|++++.
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~~ 229 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMGKLIEV 229 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 799999999975 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 230 g~~~~~~ 236 (253)
T PRK14242 230 GPTEQIF 236 (253)
T ss_pred CCHHHHH
Confidence 9988763
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=367.05 Aligned_cols=217 Identities=22% Similarity=0.430 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 1 ml~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 70 (271)
T PRK13638 1 MLATSDLWFRY--------QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKR 70 (271)
T ss_pred CeEEEEEEEEc--------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccC
Confidence 37899999998 24579999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCC-CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 --KSLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l-~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
...++.++||+|++.+ +...|+.||+.+..... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 71 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~ 142 (271)
T PRK13638 71 GLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQK 142 (271)
T ss_pred CHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHH
Confidence 1345679999999752 33458999998865432 223444456688899999998766653 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 221 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHGAPG 221 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877899999999975 466889999999999999999998
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 222 ~~~ 224 (271)
T PRK13638 222 EVF 224 (271)
T ss_pred HHh
Confidence 864
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=363.06 Aligned_cols=224 Identities=24% Similarity=0.388 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+.+. +.+|+|.++|+++.
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~ 75 (253)
T PRK14267 4 AIETVNLRVYY--------GSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS 75 (253)
T ss_pred eEEEEeEEEEe--------CCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccc
Confidence 58999999998 2357999999999999999999999999999999999965321 25899999999874
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..+++.++|++|++.+++.+||.||+.++...+. .....++..+++.++++.++|.+..... -+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 153 (253)
T PRK14267 76 PDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDR-LNDYPSNLSGG 153 (253)
T ss_pred cccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhh-hccChhhCCHH
Confidence 1346789999999999999999999998754321 0012334455678889998885321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYLGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14267 232 TRKVF 236 (253)
T ss_pred HHHHH
Confidence 98874
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=355.59 Aligned_cols=221 Identities=29% Similarity=0.543 Sum_probs=205.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|++++|+++| +++.+++|+||.++||++++++|||||||||.+++|.|.+. +++|+|.++|.+++...+
T Consensus 2 ~L~ie~vtK~F--------g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~~ 71 (300)
T COG4152 2 ALEIEGVTKSF--------GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIK 71 (300)
T ss_pred ceEEecchhcc--------CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhhh
Confidence 58999999988 68899999999999999999999999999999999999664 468999999999998889
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
.+|||.|.+..|+|.+||.|.|.|.+.++ .+++++..+++..+|+.+++....... +.+||.|++|++.+..
T Consensus 72 ~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfis 143 (300)
T COG4152 72 NRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFIS 143 (300)
T ss_pred hhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHH
Confidence 99999999999999999999999999886 578889999999999999998766554 5799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
+++++|+++|||||+|||||.+.+.+-+.+.+++++|.|||+++|++. .+.++||++++|++|+.|.+|+.+++.+-|.
T Consensus 144 aviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999965 6899999999999999999999999987553
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=375.97 Aligned_cols=227 Identities=26% Similarity=0.389 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (640)
.|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~ 78 (326)
T PRK11022 3 LLNVDKLSVHFGDE----SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRI 78 (326)
T ss_pred eEEEeCeEEEECCC----CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcC
Confidence 48999999998321 12256999999999999999999999999999999999966421 368999999998742
Q ss_pred ---h---c-cCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ---S---L-KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ---~---~-~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
. + ++.|+||+|++ .++|.+||.+++........ ....++.++++.++++.+||.+..+ .-+.++++|
T Consensus 79 ~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~--~l~~~p~~L 154 (326)
T PRK11022 79 SEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPAS--RLDVYPHQL 154 (326)
T ss_pred CHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHH--HHhCCchhC
Confidence 1 1 24699999998 57899999999876654321 2345566778999999999975221 113457899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|++||+||||+|||+.++.++++.|+++.+ .|.|+|++|||+. .+.++||+|++|++|+|+
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~G~iv 233 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYAGQVV 233 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 4899999999976 466889999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 234 e~g~~~~~~ 242 (326)
T PRK11022 234 ETGKAHDIF 242 (326)
T ss_pred EECCHHHHh
Confidence 999999885
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=368.26 Aligned_cols=219 Identities=26% Similarity=0.453 Sum_probs=188.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~------~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~ 76 (279)
T PRK13635 5 IIRVEHISFRYP------DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETV 76 (279)
T ss_pred eEEEEEEEEEeC------CCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcH
Confidence 599999999982 123569999999999999999999999999999999999653 468999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.|+|++|++. +++.+||.|||.++.... ..+.++..+++.++++.+||.+..++. +..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~qr 148 (279)
T PRK13635 77 WDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNRE-----PHRLSGGQKQR 148 (279)
T ss_pred HHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCC-----cccCCHHHHHH
Confidence 34678999999973 566789999999875432 234455566789999999998766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNKGEILEEGTPEE 226 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 8999999999764 5 4699999999999999999988
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+..
T Consensus 227 ~~~ 229 (279)
T PRK13635 227 IFK 229 (279)
T ss_pred Hhc
Confidence 753
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=364.22 Aligned_cols=213 Identities=31% Similarity=0.482 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++|++++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 ml~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~-~~ 69 (255)
T PRK11248 1 MLQISHLYADY--------GGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG-PG 69 (255)
T ss_pred CEEEEEEEEEe--------CCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC-CC
Confidence 37899999998 24579999999999999999999999999999999999653 568999999998753 33
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..++|++|++.+++.+||.||+.++...+ .....+..+++.++++.+||.+..++ .+..||||||||++|||
T Consensus 70 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 70 AERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKR-----YIWQLSGGQRQRVGIAR 141 (255)
T ss_pred CcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhC-----ChhhCCHHHHHHHHHHH
Confidence 56999999999999899999999865432 12344455678899999999866554 34689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEc--CCeEEEecChH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG--KGSLLYFGKAS 381 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~--~G~iv~~G~~~ 381 (640)
+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+..+||+|++|+ +|+++..++.+
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999864 5899999999975 5778899999998 59999988653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-44 Score=369.82 Aligned_cols=215 Identities=25% Similarity=0.425 Sum_probs=184.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
.++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. .
T Consensus 26 ~~~~~~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~ 95 (269)
T cd03294 26 SKEEILKKT--------GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKE 95 (269)
T ss_pred hhhhhhhhc--------CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhh
Confidence 455777666 45679999999999999999999999999999999999653 568999999998742 1
Q ss_pred ----ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 227 ----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 227 ----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++++|++|++.+++.+||+||+.+..... .....+..+++.++++.+||.+..++. +..|||||||
T Consensus 96 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 167 (269)
T cd03294 96 LRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKY-----PDELSGGMQQ 167 (269)
T ss_pred hhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----cccCCHHHHH
Confidence 1357999999999999999999999875432 123344556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++
T Consensus 168 rv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~ 246 (269)
T cd03294 168 RVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPE 246 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999754 899999999975 467889999999999999999998
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 247 ~~~ 249 (269)
T cd03294 247 EIL 249 (269)
T ss_pred HHH
Confidence 864
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=357.78 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=175.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|..+ .+..++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (228)
T cd03257 2 LEVKNLSVSFPTG----GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRR 75 (228)
T ss_pred eEEEeeeEeccCC----CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchh
Confidence 7899999998211 011369999999999999999999999999999999999643 568999999998742
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-HHHHHHHcCCC-ccccccccCccCCcCCH
Q 006571 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-AIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (640)
..++.++|++|++ .+++.+||+||+.+......+ . ......+. +.++++.++|. +..+. .+..|||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~ 148 (228)
T cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNR-----YPHELSG 148 (228)
T ss_pred hHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhC-----CchhcCH
Confidence 3467899999998 567789999999886543211 1 11222222 35788999985 34443 3568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|+++..
T Consensus 149 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEEEec
Confidence 9999999999999999999999999999999999999999999875 899999999975 46678999999999999876
Q ss_pred c
Q 006571 378 G 378 (640)
Q Consensus 378 G 378 (640)
|
T Consensus 228 g 228 (228)
T cd03257 228 G 228 (228)
T ss_pred C
Confidence 5
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=375.80 Aligned_cols=227 Identities=25% Similarity=0.430 Sum_probs=191.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~~ 225 (640)
..|+++||++.|..+ .+...+|+||||+|++||+++|+|+||||||||+++|+|.+. +. .+|+|.++|+++..
T Consensus 11 ~~L~i~~l~~~~~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~-p~~~~sG~I~~~G~~i~~ 85 (330)
T PRK09473 11 ALLDVKDLRVTFSTP----DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGRIGGSATFNGREILN 85 (330)
T ss_pred ceEEEeCeEEEEecC----CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC-CCCCCCeEEEECCEECCc
Confidence 369999999998421 123579999999999999999999999999999999999653 32 48999999998742
Q ss_pred ----h---cc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 226 ----S---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 226 ----~---~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
. +| +.|+||+|++ .++|.+|+.+++.+...... ..+..+..+++.++++.+||++..+. -+.++++
T Consensus 86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~--~~~~p~~ 161 (330)
T PRK09473 86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR--MKMYPHE 161 (330)
T ss_pred CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH--hcCCccc
Confidence 1 23 4799999998 68899999999987654321 23455666788999999999764322 2356789
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||+|||||+.+|++||+||||+|||+.++..+++.|+++.++ |.|+|++|||+. .+.++||+|++|++|+|
T Consensus 162 LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 162 FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYAGRT 240 (330)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865 899999999976 46678999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
++.|+++++.
T Consensus 241 ve~g~~~~i~ 250 (330)
T PRK09473 241 MEYGNARDVF 250 (330)
T ss_pred EEECCHHHHH
Confidence 9999999885
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=364.64 Aligned_cols=217 Identities=27% Similarity=0.472 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~ 71 (258)
T PRK13548 2 MLEARNLSVRL--------GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSP 71 (258)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCH
Confidence 48899999998 34579999999999999999999999999999999999653 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++.... ....+...+++.++++.+||.+..++. +..|||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGe~qrv 143 (258)
T PRK13548 72 AELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRD-----YPQLSGGEQQRV 143 (258)
T ss_pred HHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHH
Confidence 34567999999998877899999999864321 112233445678899999998766654 468999999999
Q ss_pred HHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+|||||+ .+|++|||||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||+|++|++|++++.
T Consensus 144 ~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 222 (258)
T PRK13548 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRLVAD 222 (258)
T ss_pred HHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEEEee
Confidence 9999999 5999999999999999999999999999998 56899999999975 46779999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 223 ~~~~~~~ 229 (258)
T PRK13548 223 GTPAEVL 229 (258)
T ss_pred CCHHHHh
Confidence 9988764
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=356.16 Aligned_cols=220 Identities=26% Similarity=0.473 Sum_probs=195.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++.++|+++| +.-.+++||||++++||+++|+||||||||||+|+|+|.+. |++|+|.++|+++..
T Consensus 4 lL~v~~l~k~F--------GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p 73 (250)
T COG0411 4 LLEVRGLSKRF--------GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPP 73 (250)
T ss_pred eeeeccceeec--------CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCH
Confidence 58899999998 56789999999999999999999999999999999999654 568999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccC--------CC-CccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL--------PN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (640)
..|..|+--||...+|++|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|+.. .
T Consensus 74 ~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A-----~ 148 (250)
T COG0411 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPA-----G 148 (250)
T ss_pred HHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchh-----h
Confidence 235678999999999999999999998865331 11 1134556778999999999999999865 4
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+||+|||||+.|||||+.+|++|+||||.+||.+....++.+.|+++.++ |.||++|-||.. .+..+||||+||+.|+
T Consensus 149 ~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~G~ 227 (250)
T COG0411 149 NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNYGE 227 (250)
T ss_pred cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccCCc
Confidence 79999999999999999999999999999999999999999999999974 799999999965 5899999999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
++..|+|+++.
T Consensus 228 ~IAeG~P~eV~ 238 (250)
T COG0411 228 VIAEGTPEEVR 238 (250)
T ss_pred CcccCCHHHHh
Confidence 99999999985
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=355.10 Aligned_cols=207 Identities=32% Similarity=0.551 Sum_probs=177.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (213)
T cd03262 1 IEIKNLHKSF--------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70 (213)
T ss_pred CEEEEEEEEE--------CCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchh
Confidence 4789999998 23579999999999999999999999999999999999653 568999999998731
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|++||+.++..... ....++..+++.++++.+|+.+..++. +..||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 143 (213)
T cd03262 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQR 143 (213)
T ss_pred HHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHH
Confidence 346789999999999998999999998643111 123344556788899999997766553 47899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++. ++.++||++++|++|++
T Consensus 144 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 144 VAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999877899999999975 46788999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=359.38 Aligned_cols=219 Identities=26% Similarity=0.414 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 71 (242)
T TIGR03411 2 ILYLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPE 71 (242)
T ss_pred eEEEEeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCH
Confidence 48999999998 23579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC--C---CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N---TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..++.++|++|++.+++.+||+||+.++...... . ....++.+++++++++.+|+.+..++. ++.|||
T Consensus 72 ~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (242)
T TIGR03411 72 HQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRL-----AGLLSH 146 (242)
T ss_pred HHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCH
Confidence 1245699999999999999999999986432100 0 011234456788999999998766653 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||+|++|++|++++.|
T Consensus 147 Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 147 GQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEEeeC
Confidence 999999999999999999999999999999999999999999976 789999999965 477889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 225 ~~~~~~ 230 (242)
T TIGR03411 225 SLDQVQ 230 (242)
T ss_pred CHHHHh
Confidence 988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=354.96 Aligned_cols=202 Identities=29% Similarity=0.506 Sum_probs=172.0
Q ss_pred EEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hcc
Q 006571 151 KFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK 228 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~~ 228 (640)
+++||+++| ++ +++|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ..+
T Consensus 1 ~~~~l~~~~--------~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 70 (205)
T cd03226 1 RIENISFSY--------KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERR 70 (205)
T ss_pred CcccEEEEe--------CCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhh
Confidence 367899988 23 579999999999999999999999999999999999653 568999999998743 345
Q ss_pred CcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 229 SKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 229 ~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+.++|++|++. .+..+||+||+.++.... . ...+++.++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 138 (205)
T cd03226 71 KSIGYVMQDVDYQLFTDSVREELLLGLKEL---D----AGNEQAETVLKDLDLYALKERH-----PLSLSGGQKQRLAIA 138 (205)
T ss_pred cceEEEecChhhhhhhccHHHHHhhhhhhc---C----ccHHHHHHHHHHcCCchhcCCC-----chhCCHHHHHHHHHH
Confidence 67999999974 233579999998864321 1 1124678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus 139 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 139 AALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999877999999999975 466789999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=356.08 Aligned_cols=208 Identities=27% Similarity=0.489 Sum_probs=179.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|+ +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 72 (222)
T PRK10908 2 IRFEHVSKAYL-------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNR 72 (222)
T ss_pred EEEEeeEEEec-------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChh
Confidence 78999999982 23579999999999999999999999999999999999653 568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++|++|++.+++.+|++||+.+..... ....++..+++.++++.++|.+..++ .+..|||||||
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 144 (222)
T PRK10908 73 EVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKN-----FPIQLSGGEQQ 144 (222)
T ss_pred HHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhC-----CchhCCHHHHH
Confidence 14678999999999888899999999875432 12344445567889999999876554 34689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+...||+|++|++|+++
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999877899999999975 466789999999999975
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=366.69 Aligned_cols=221 Identities=25% Similarity=0.423 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|... ....+++|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~---~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (280)
T PRK13649 2 GINLQNVSYTYQAG---TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSK 76 (280)
T ss_pred eEEEEEEEEEcCCC---CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccccc
Confidence 37899999998311 0012469999999999999999999999999999999999653 568999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (640)
.+++.|+|++|++ .+++ .||+||+.+..... ....++..++++++++.+||.+ ..+. .+..||
T Consensus 77 ~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS 147 (280)
T PRK13649 77 NKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEK-----NPFELS 147 (280)
T ss_pred ccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhC-----CcccCC
Confidence 3467799999997 4665 69999999865432 1234445566888999999963 3443 356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|++++.
T Consensus 148 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999877899999999975 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 227 g~~~~~~ 233 (280)
T PRK13649 227 GKPKDIF 233 (280)
T ss_pred CCHHHHh
Confidence 9998874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=374.69 Aligned_cols=227 Identities=26% Similarity=0.431 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeeccc--cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGM--TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~--~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (640)
.|+++||++.|..+.. ...+.+.+|+||||+|++||++||+|+||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKA 82 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcC
Confidence 6999999999843210 00113579999999999999999999999999999999999653 468999999998742
Q ss_pred ------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcC
Q 006571 226 ------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~L 296 (640)
.++++|+||+|++ .++|.+||.+++........ ...+.+..+++.++++.+||.+ ..+ .++++|
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~-----~~p~~L 155 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYD-----RYPHMF 155 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhc-----CCCccC
Confidence 2467899999998 58899999999987654321 2345566778999999999963 444 356899
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|++||+||||++||..++.+|++.|+++.++ |.|||++|||+. .+.++||+|++|++|+|+
T Consensus 156 SgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999975 466789999999999999
Q ss_pred EecChHHHHH
Q 006571 376 YFGKASEAMA 385 (640)
Q Consensus 376 ~~G~~~~~~~ 385 (640)
+.|+++++..
T Consensus 235 e~g~~~~~~~ 244 (327)
T PRK11308 235 EKGTKEQIFN 244 (327)
T ss_pred EECCHHHHhc
Confidence 9999998853
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=366.97 Aligned_cols=217 Identities=26% Similarity=0.452 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|. +++++|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 ml~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 71 (274)
T PRK13644 1 MIRLENVSYSYP-------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSK 71 (274)
T ss_pred CEEEEEEEEEcC-------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCcccc
Confidence 378999999982 23569999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++. .+...||.||+.+..... ..+..+..+++.++++.+||.+..++. +..|||||||
T Consensus 72 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~q 143 (274)
T PRK13644 72 LQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRS-----PKTLSGGQGQ 143 (274)
T ss_pred HHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCC-----cccCCHHHHH
Confidence 34678999999975 355689999999875432 234455566788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 144 rv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 144 CVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998779999999999764 5 5699999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 222 ~~ 223 (274)
T PRK13644 222 VL 223 (274)
T ss_pred Hh
Confidence 64
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=418.26 Aligned_cols=354 Identities=21% Similarity=0.261 Sum_probs=240.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhh
Q 006571 11 ARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAA 90 (640)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 90 (640)
.+..++..++..+...|.+++.+|+++++.+..+.+++.+......+...+.....+...........-..+.-+..|+.
T Consensus 184 ~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ 263 (585)
T TIGR01192 184 QAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTV 263 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667788889999999999999999988887777765554332221100000000000001111112233456777
Q ss_pred HhhhhhhhhhhhhccccCCC----CccccccCCC------CCCCCCccccccccC--CCCCCCCCCCCCeeEEEEeEEEE
Q 006571 91 LSRASSASLGLSFSFTGFTM----PPDEIADSKP------FSDDDIPEDIEAGTR--ERPKFQTEPTLPIYLKFTDVTYK 158 (640)
Q Consensus 91 ~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~vs~~ 158 (640)
++..|..+.|.+.++..+.. |...+..... ....++.+..+..+. ........+.....++++||+|+
T Consensus 264 ~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 343 (585)
T TIGR01192 264 LVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFE 343 (585)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEE
Confidence 77777777777666553221 2111110000 000000000000000 00000001111235999999999
Q ss_pred EeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEE
Q 006571 159 VILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFV 234 (640)
Q Consensus 159 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV 234 (640)
|+ +++++|+|+|++|++||.+||+||||||||||+++|+|.. + +.+|+|.+||.++.+ .+++.++||
T Consensus 344 y~-------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~-~~~G~i~~~g~~~~~~~~~~~~~~i~~v 414 (585)
T TIGR01192 344 FA-------NSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-D-PTVGQILIDGIDINTVTRESLRKSIATV 414 (585)
T ss_pred CC-------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-C-CCCCEEEECCEEhhhCCHHHHHhheEEE
Confidence 83 2246999999999999999999999999999999999854 3 468999999998753 568899999
Q ss_pred ccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH-----HHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 235 TQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 235 ~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
+|++.+|+ .|++|||.++. + ..++++..+.. ++.+. .+++..||.+|.. ...||||||||++||||
T Consensus 415 ~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~~~~~-~~~LSgGq~qrl~lARa 485 (585)
T TIGR01192 415 FQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTLVGER-GNRLSGGERQRLAIARA 485 (585)
T ss_pred ccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccchhcCC-CCCCCHHHHHHHHHHHH
Confidence 99999997 59999999863 1 12333322222 22232 3466678887754 56799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+++|++|+|||||++||+.++..+.+.|+++. +++|+|++||+++. ...||+|++|++|++++.|+++++.+
T Consensus 486 ll~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~--~~~~d~i~~l~~G~i~~~g~~~~l~~ 558 (585)
T TIGR01192 486 ILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST--VRNADLVLFLDQGRLIEKGSFQELIQ 558 (585)
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH--HHcCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999875 48999999999853 46799999999999999999999864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=355.48 Aligned_cols=210 Identities=30% Similarity=0.535 Sum_probs=176.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|.. ..+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~----~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 75 (221)
T TIGR02211 2 LKCENLGKRYQE----GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSN 75 (221)
T ss_pred EEEEeeeEEccC----CCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHh
Confidence 689999999831 1112579999999999999999999999999999999999653 568999999998742
Q ss_pred h---cc-CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 S---LK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ~---~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
. ++ +.++||+|++.+++.+||+||+.+....+ .....+..+++.++++.+||.+..++. +..||||||
T Consensus 76 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 147 (221)
T TIGR02211 76 ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHR-----PSELSGGER 147 (221)
T ss_pred HHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHH
Confidence 1 23 57999999999998899999999865432 122334456678899999998666543 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+ ..+|++++|++|+++
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999764 899999999976 34 558999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-45 Score=416.62 Aligned_cols=353 Identities=24% Similarity=0.334 Sum_probs=244.0
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+.++..++...+..+...+.....+++|+++.+....+++.+..........+....................+.-+..|
T Consensus 184 ~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (576)
T TIGR02204 184 KLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVG 263 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677788888999999999999999999988888887766543333221110000000000111111122333457
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Cccccc------------cCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDEIA------------DSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.+..+..+.. |...+. ..+.....+.+++.+... .+.. ........|++
T Consensus 264 ~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~--~~~~-~~~~~~~~i~~ 340 (576)
T TIGR02204 264 AHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPA--HPKT-LPVPLRGEIEF 340 (576)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC--CCcc-CCcCCCceEEE
Confidence 7766666667776655542211 111111 001111111111100000 0000 00111236999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+. ..++++|+|+||+++|||.++|+||||||||||+|+|+|.. + +.+|+|.+||.++.+ .++
T Consensus 341 ~~v~f~y~~-----~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~-p~~G~I~i~g~~i~~~~~~~~~ 413 (576)
T TIGR02204 341 EQVNFAYPA-----RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-D-PQSGRILLDGVDLRQLDPAELR 413 (576)
T ss_pred EEEEEECCC-----CCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-C-CCCCEEEECCEEHHhcCHHHHH
Confidence 999999832 12367999999999999999999999999999999999954 3 458999999998753 567
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqr 301 (640)
++++|+||++.+|+. |++|||.++. + ..+++ ++.+.++..+ +++..||.+|+. ...||||||
T Consensus 414 ~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~~----~~~~~l~~~~l~~~i~~l~~gl~t~i~~~-g~~LSgGq~ 482 (576)
T TIGR02204 414 ARMALVPQDPVLFAA-SVMENIRYGR----P-DATDE----EVEAAARAAHAHEFISALPEGYDTYLGER-GVTLSGGQR 482 (576)
T ss_pred HhceEEccCCccccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCcHHHHHhCCCCCCceeCCC-CCcCCHHHH
Confidence 889999999999975 9999998752 1 12222 2334444433 355678888764 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++||||++++|++|+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....||+|++|++|++++.|+++
T Consensus 483 Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~~~~g~~~ 559 (576)
T TIGR02204 483 QRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRIVAQGTHA 559 (576)
T ss_pred HHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEEEeeecHH
Confidence 99999999999999999999999999999999999999985 4899999999975 45789999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 560 ~l~~ 563 (576)
T TIGR02204 560 ELIA 563 (576)
T ss_pred HHHH
Confidence 8753
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=360.57 Aligned_cols=222 Identities=22% Similarity=0.403 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC--CCC-CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL--MEP-TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~--~~~-~~~G~I~~~G~~~~~ 225 (640)
+|+++|+++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.. .++ +.+|+|.++|+++..
T Consensus 3 ~l~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14245 3 KIDARDVNFWY--------GDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYD 74 (250)
T ss_pred EEEEEEEEEEE--------CCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEeccc
Confidence 68999999998 3457999999999999999999999999999999999852 222 248999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++ .|+.||+.++...+. ....+...+.++++++.++|.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 150 (250)
T PRK14245 75 KGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESAFALSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCcccCCHH
Confidence 34667999999999887 599999998754321 1122334566788999999865322111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~G~~~~~~~ 228 (250)
T PRK14245 151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYMGEMVEYDD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999995 4799999999976 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14245 229 TKKIF 233 (250)
T ss_pred HHHHh
Confidence 99874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=361.61 Aligned_cols=220 Identities=23% Similarity=0.371 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 74 (255)
T PRK11300 5 LLSVSGLMMRF--------GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPG 74 (255)
T ss_pred eEEEeeEEEEE--------CCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCH
Confidence 59999999998 34679999999999999999999999999999999999643 568999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC----------CCc--cHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTL--TKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----------~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
. .+..++|++|++.+++.+||+||+.++...... ... ...+..+.+.++++.+||.+..++.
T Consensus 75 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~---- 150 (255)
T PRK11300 75 HQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQ---- 150 (255)
T ss_pred HHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCC----
Confidence 1 234689999999999999999999986431100 000 1122345678889999997666543
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|+
T Consensus 151 -~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~ 228 (255)
T PRK11300 151 -AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVN 228 (255)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4689999999999999999999999999999999999999999999999875 899999999975 5678899999999
Q ss_pred CCeEEEecChHHHH
Q 006571 371 KGSLLYFGKASEAM 384 (640)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 229 ~g~i~~~~~~~~~~ 242 (255)
T PRK11300 229 QGTPLANGTPEEIR 242 (255)
T ss_pred CCeEEecCCHHHHh
Confidence 99999999988763
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=382.23 Aligned_cols=204 Identities=25% Similarity=0.460 Sum_probs=178.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h----ccCcEEEEccCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S----LKSKIGFVTQDDVLF 241 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~----~~~~i~yV~Q~~~l~ 241 (640)
..+|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. . .++.++||+|++.+|
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~ 118 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALM 118 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCC
Confidence 348999999999999999999999999999999999653 568999999998742 1 135799999999999
Q ss_pred CCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006571 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 321 (640)
+.+||+||+.++...+ ..+.++..+++.++++.+||.+..++ .++.|||||||||+|||||+.+|++|||||
T Consensus 119 ~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~-----~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 119 PHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS-----YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999986543 23345556778899999999876665 457899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 322 PTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||+|||+.++..+.+.|+++.+ .|+|||++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999975 4899999999975 577899999999999999999998875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=363.07 Aligned_cols=218 Identities=24% Similarity=0.430 Sum_probs=186.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ...+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~ 78 (269)
T PRK13648 7 IIVFKNVSFQYQ------SDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNF 78 (269)
T ss_pred eEEEEEEEEEcC------CCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 699999999982 122469999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++. +++..|+.+|+.+..... ....+...+++.++++.+++.+..++ .+..||||||||
T Consensus 79 ~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 150 (269)
T PRK13648 79 EKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADY-----EPNALSGGQKQR 150 (269)
T ss_pred HHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhC-----CcccCCHHHHHH
Confidence 35678999999984 677789999998875432 12344455678889999999876664 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||+|++|++|++++.|++++
T Consensus 151 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~-~~d~i~~l~~G~i~~~g~~~~ 228 (269)
T PRK13648 151 VAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AM-EADHVIVMNKGTVYKEGTPTE 228 (269)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hh-cCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999764 8999999999764 54 499999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 229 ~~ 230 (269)
T PRK13648 229 IF 230 (269)
T ss_pred Hh
Confidence 74
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=374.76 Aligned_cols=229 Identities=21% Similarity=0.311 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC--CcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP--TVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~--~~~G~I~~~G~~~~~- 225 (640)
.|+++||+++|..+ .+.+.+|+||||+|++||+++|+|+||||||||+++|+|.+..+ +.+|+|.++|+++..
T Consensus 3 ~L~v~~l~~~y~~~----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~ 78 (330)
T PRK15093 3 LLDIRNLTIEFKTS----DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRL 78 (330)
T ss_pred eEEEeeeEEEEeCC----CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcC
Confidence 58999999998432 13457999999999999999999999999999999999965421 368999999998742
Q ss_pred ---h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 ---S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 ---~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
. .++.|+||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+..+ ..+.++
T Consensus 79 ~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--~~~~~p 156 (330)
T PRK15093 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--AMRSFP 156 (330)
T ss_pred CHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--HHhCCc
Confidence 1 1357999999985 6788999999986432110000 012344567889999999975321 113456
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
.+|||||||||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||+||||+. .+.++||+|++|++|
T Consensus 157 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~G 235 (330)
T PRK15093 157 YELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYCG 235 (330)
T ss_pred hhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECC
Confidence 899999999999999999999999999999999999999999999999874 899999999975 467889999999999
Q ss_pred eEEEecChHHHH
Q 006571 373 SLLYFGKASEAM 384 (640)
Q Consensus 373 ~iv~~G~~~~~~ 384 (640)
+|++.|+++++.
T Consensus 236 ~ive~g~~~~i~ 247 (330)
T PRK15093 236 QTVETAPSKELV 247 (330)
T ss_pred EEEEECCHHHHH
Confidence 999999998875
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=366.05 Aligned_cols=218 Identities=30% Similarity=0.525 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++||+++|. +.+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (277)
T PRK13652 3 LIETRDLCYSYS-------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENI 73 (277)
T ss_pred eEEEEEEEEEeC-------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 589999999982 13469999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 -SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++. ++ ..||.||+.++.... ....+...++++++++.+||.+..++. ++.|||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~q 144 (277)
T PRK13652 74 REVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRV-----PHHLSGGEKK 144 (277)
T ss_pred HHHHhheEEEecCcccccc-cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCCHHHHH
Confidence 35678999999973 45 579999998865422 234455556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|+++
T Consensus 145 rl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~~~ 223 (277)
T PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGTVE 223 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECCHH
Confidence 999999999999999999999999999999999999999875 899999999976 467899999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 224 ~~~~ 227 (277)
T PRK13652 224 EIFL 227 (277)
T ss_pred HHhc
Confidence 8753
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=363.65 Aligned_cols=220 Identities=26% Similarity=0.455 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 71 (255)
T PRK11231 2 TLRTENLTVGY--------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSS 71 (255)
T ss_pred EEEEEeEEEEE--------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCH
Confidence 48999999998 34579999999999999999999999999999999999643 468999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|+.||+.++...... .........+++.++++.+||.+..++. +..||||||||
T Consensus 72 ~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qr 146 (255)
T PRK11231 72 RQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGGQRQR 146 (255)
T ss_pred HHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHHHHHH
Confidence 3456799999999998889999999985311000 0111223455678899999998766654 56899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 99999999999999999999999999999999999999877899999999975 57789999999999999999998876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 226 ~ 226 (255)
T PRK11231 226 M 226 (255)
T ss_pred c
Confidence 4
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=364.02 Aligned_cols=208 Identities=25% Similarity=0.428 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++. .+
T Consensus 11 ~~l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~-~~ 79 (257)
T PRK11247 11 TPLLLNAVSKRY--------GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA-EA 79 (257)
T ss_pred CcEEEEEEEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH-Hh
Confidence 359999999998 34579999999999999999999999999999999999653 56899999998763 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.++.. . ...+++.++++.+||.+..+. .+..||||||||++||
T Consensus 80 ~~~i~~v~q~~~l~~~~tv~enl~~~~~---~------~~~~~~~~~l~~~gl~~~~~~-----~~~~LSgGqkqrl~la 145 (257)
T PRK11247 80 REDTRLMFQDARLLPWKKVIDNVGLGLK---G------QWRDAALQALAAVGLADRANE-----WPAALSGGQKQRVALA 145 (257)
T ss_pred hCceEEEecCccCCCCCcHHHHHHhccc---c------hHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHHH
Confidence 6789999999999998999999987521 0 123567889999999876554 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|++|++++.|+.+
T Consensus 146 raL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 146 RALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999865 4899999999975 467889999999999999988653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-43 Score=362.11 Aligned_cols=224 Identities=25% Similarity=0.421 Sum_probs=186.1
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~ 223 (640)
...|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++
T Consensus 11 ~~~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~ 82 (260)
T PRK10744 11 PSKIQVRNLNFYY--------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 (260)
T ss_pred CceEEEEEEEEEe--------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEc
Confidence 3479999999998 235799999999999999999999999999999999996531 2 3689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .++++++|++|++.+++ .||+||+.++..... ..+.++..+++.++++.+++.+...... +..+..||
T Consensus 83 ~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS 158 (260)
T PRK10744 83 LTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKL-HQSGYSLS 158 (260)
T ss_pred cccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHH-hcCCCCCC
Confidence 31 34678999999999887 799999998754221 1334445567889999998853211111 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.++||++++|++|++++.
T Consensus 159 ~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~ 236 (260)
T PRK10744 159 GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAFMYLGELIEF 236 (260)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999975 46788999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 237 g~~~~~~ 243 (260)
T PRK10744 237 GNTDTIF 243 (260)
T ss_pred CCHHHHH
Confidence 9988864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=359.61 Aligned_cols=223 Identities=25% Similarity=0.412 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~~~-- 225 (640)
.++++||++.| +++.+|+|+||++++||+++|+||||||||||+++|+|...+ ++.+|+|.++|+++..
T Consensus 2 ~~~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~ 73 (246)
T PRK14269 2 IAKTTNLNLFY--------GKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQD 73 (246)
T ss_pred ceeeeeeEEEE--------CCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCC
Confidence 47899999998 245799999999999999999999999999999999996532 2468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+|+ .||+||+.++...+.. .......++++.++++.++|.+...... +..+..||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qr 150 (246)
T PRK14269 74 VVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSGGQQQR 150 (246)
T ss_pred HHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCHHHHHH
Confidence 34678999999999997 6999999987533210 0012334556788999999953221111 23457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.||++++|++|++++.|+++++
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999865 899999999975 46788999999999999999998886
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
.
T Consensus 229 ~ 229 (246)
T PRK14269 229 F 229 (246)
T ss_pred H
Confidence 4
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=363.51 Aligned_cols=221 Identities=27% Similarity=0.484 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (640)
.|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.++..
T Consensus 4 ~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~ 75 (262)
T PRK09984 4 IIRVEKLAKTF--------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG 75 (262)
T ss_pred EEEEeeEEEEe--------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc
Confidence 69999999998 3467999999999999999999999999999999999965321 236999999988632
Q ss_pred -------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 -------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 -------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
..++.++|++|++.+++.+||.||+.++.....+. ....++.+.++.++++.+||.+..+.. +
T Consensus 76 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 150 (262)
T PRK09984 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQR-----V 150 (262)
T ss_pred ccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCC-----c
Confidence 23567999999999999999999998764211000 011233456788999999998766654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.+.||+|++|++|
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~g 229 (262)
T PRK09984 151 STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQG 229 (262)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999999986 4899999999975 467889999999999
Q ss_pred eEEEecChHHH
Q 006571 373 SLLYFGKASEA 383 (640)
Q Consensus 373 ~iv~~G~~~~~ 383 (640)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999998764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=391.00 Aligned_cols=216 Identities=32% Similarity=0.536 Sum_probs=184.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-- 224 (640)
+..++.+|++|.|+ +++++++|+|+++++|+.+||+|+||||||||+++|+|... +++|+|.+||.+..
T Consensus 318 ~~ei~~~~l~~~y~-------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng~~l~~l 388 (559)
T COG4988 318 PIEISLENLSFRYP-------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNGIDLRDL 388 (559)
T ss_pred CceeeecceEEecC-------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCcccccc
Confidence 44566779999983 23389999999999999999999999999999999999654 46899999999875
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC------CccccccccCccCCcC
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL------ERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~~~t~vg~~~~~~L 296 (640)
..+|++++||+|+|.+|+. |++|||.++.. ..++++ +.++++..|| +++.|+.+|+. .++|
T Consensus 389 ~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e~----i~~al~~a~l~~~v~~p~GLdt~ige~-G~~L 457 (559)
T COG4988 389 SPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDEE----IIAALDQAGLLEFVPKPDGLDTVIGEG-GAGL 457 (559)
T ss_pred CHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHHH----HHHHHHHhcHHHhhcCCCcccchhccC-CCCC
Confidence 3689999999999999986 99999998732 123333 3334443333 56778888864 5789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||+|||++||||+.+++++++||||++||.++++.|.+.|.++++ ++|||++||++.. ...+|+|++|++|++++
T Consensus 458 SgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~~--~~~~D~I~vld~G~l~~ 534 (559)
T COG4988 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLED--AADADRIVVLDNGRLVE 534 (559)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChHH--HhcCCEEEEecCCceec
Confidence 99999999999999999999999999999999999999999999987 5999999999763 57799999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+++.+
T Consensus 535 ~g~~~~L~~ 543 (559)
T COG4988 535 QGTHEELSE 543 (559)
T ss_pred cCCHHHHhh
Confidence 999999864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=364.04 Aligned_cols=226 Identities=23% Similarity=0.427 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+++|.... ....+++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLD 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccC
Confidence 489999999983210 000124679999999999999999999999999999999999643 568999999998742
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
.+++.|+||+|++ .+++.+||+||+.+..... .........+++.++++.+||. +..+. .+..||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 152 (265)
T TIGR02769 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK-----LPRQLS 152 (265)
T ss_pred HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC-----ChhhCC
Confidence 1356799999997 4677899999998764321 1123334556788999999995 44554 346899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||++++|++|++++
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~ 231 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQIVE 231 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999865 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 232 ~g~~~~~~ 239 (265)
T TIGR02769 232 ECDVAQLL 239 (265)
T ss_pred ECCHHHHc
Confidence 99998875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=363.25 Aligned_cols=216 Identities=31% Similarity=0.547 Sum_probs=185.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. +.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (275)
T PRK13639 2 LETRDLKYSYP-------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKS 72 (275)
T ss_pred EEEEEEEEEeC-------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccch
Confidence 78999999982 23469999999999999999999999999999999999653 568999999998731
Q ss_pred --hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.|+|++|++ .+++ .||.||+.++.... .....+..+++.++++.+||.+..++. +..||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS~Gq~ 143 (275)
T PRK13639 73 LLEVRKTVGIVFQNPDDQLFA-PTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKP-----PHHLSGGQK 143 (275)
T ss_pred HHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCC-----hhhCCHHHH
Confidence 2467899999997 3454 69999998864321 233445566788999999998766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|++|++++.|+++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGTPK 222 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999965 467789999999999999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 223 ~~~ 225 (275)
T PRK13639 223 EVF 225 (275)
T ss_pred HHh
Confidence 875
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=362.84 Aligned_cols=223 Identities=23% Similarity=0.399 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|+++|+++..
T Consensus 19 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~ 90 (267)
T PRK14235 19 KMRARDVSVFY--------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYD 90 (267)
T ss_pred eEEEEeEEEEE--------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcc
Confidence 69999999998 2457999999999999999999999999999999999965421 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+++. ||.||+.++...+.. .....+..+++.++++.+||.+...... +..+..||||
T Consensus 91 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LSgG 167 (267)
T PRK14235 91 PRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGTGLSGG 167 (267)
T ss_pred cccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcccCCHH
Confidence 346779999999999975 999999987543210 0123344566788999999964211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+...||++++|++|++++.|+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i~~~g~ 245 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNLVEVGD 245 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999975 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 246 ~~~~~ 250 (267)
T PRK14235 246 TEKMF 250 (267)
T ss_pred HHHHH
Confidence 88864
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=353.19 Aligned_cols=206 Identities=30% Similarity=0.539 Sum_probs=173.1
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
+++||+++|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~~~l~~~~~------~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (211)
T cd03225 1 ELKNLSFSYP------DGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKE 72 (211)
T ss_pred CceeEEEecC------CCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHH
Confidence 3688999882 112579999999999999999999999999999999999653 568999999998742 3
Q ss_pred ccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.++.++|++|++. .++.+||+||+.++.... ........+++.++++.++|.+..++. +..|||||||||+
T Consensus 73 ~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~ 144 (211)
T cd03225 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVA 144 (211)
T ss_pred HHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHH
Confidence 4678999999974 355789999998865432 123344456788899999997665543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++..+||+|++|++|+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999877999999999975 5677899999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=356.83 Aligned_cols=212 Identities=25% Similarity=0.402 Sum_probs=179.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (230)
T TIGR03410 1 LEVSNLNVYY--------GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPH 70 (230)
T ss_pred CEEEeEEEEe--------CCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHH
Confidence 4789999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|+.||+.++..... .. ..+.++++++.++ +.+..++ .+..||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~-----~~~~LS~G~~qr 139 (230)
T TIGR03410 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGR-----RGGDLSGGQQQQ 139 (230)
T ss_pred HHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhC-----ChhhCCHHHHHH
Confidence 135679999999999999999999998754321 11 1233466677665 4444444 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||+|++|++|++++.|++++
T Consensus 140 v~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 140 LAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999874 899999999975 4667899999999999999999887
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=355.28 Aligned_cols=210 Identities=27% Similarity=0.498 Sum_probs=173.6
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCc
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSK 230 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~ 230 (640)
+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ..++.
T Consensus 1 ~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~-~~~~~ 69 (213)
T cd03235 1 EVEDLTVSY--------GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE-KERKR 69 (213)
T ss_pred CcccceeEE--------CCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH-HHHhh
Confidence 367899988 23569999999999999999999999999999999999653 46899999998764 45678
Q ss_pred EEEEccCCCCC--CCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 231 IGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 231 i~yV~Q~~~l~--~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++||+|++.++ ..+||+||+.++...... .....+...++++++++.++|++..++. +..||||||||++||
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la 144 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ-----IGELSGGQQQRVLLA 144 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 99999998763 237999999986432110 0011223455688899999997665543 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus 145 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 145 RALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999999877899999999975 467889999999876 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=363.87 Aligned_cols=219 Identities=27% Similarity=0.481 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.+|+++|++++|. .+++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~ 77 (271)
T PRK13632 6 VMIKVENVSFSYP------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKEN 77 (271)
T ss_pred eEEEEEeEEEEcC------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCC
Confidence 3699999999982 124579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+++.++|++|++. .++.+||+||+.++.... ....++..+++.++++.+||.+..++. +..|||||||
T Consensus 78 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~q 149 (271)
T PRK13632 78 LKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKE-----PQNLSGGQKQ 149 (271)
T ss_pred HHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCC-----cccCCHHHHH
Confidence 35678999999974 566789999999865322 123444556788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ ++|||+++|++.. + ..||++++|++|++++.|+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 227 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSEGKLIAQGKPK 227 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999866 5899999999864 4 479999999999999999988
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 228 ~~~ 230 (271)
T PRK13632 228 EIL 230 (271)
T ss_pred HHh
Confidence 764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-43 Score=364.56 Aligned_cols=222 Identities=23% Similarity=0.415 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|.... +...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~--~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~ 79 (280)
T PRK13633 4 MIKCKNVSYKYESNE--ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEEN 79 (280)
T ss_pred eEEEeeeEEEcCCCC--CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccc
Confidence 699999999983210 0013579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.+|||+|++. ++ ..||.||+.|+.... ..+..+.+++++++++.+||.+..++. +..||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LS~G~~ 150 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHA-----PHLLSGGQK 150 (280)
T ss_pred HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHH
Confidence 34678999999974 45 469999999875432 234455567789999999998776654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .||++++|++|++++.|++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~l~~G~i~~~g~~ 228 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIVMDSGKVVMEGTP 228 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEEEECCEEEEecCH
Confidence 9999999999999999999999999999999999999999764 9999999999874 54 4999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 229 ~~~~~ 233 (280)
T PRK13633 229 KEIFK 233 (280)
T ss_pred HHHhc
Confidence 98753
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=358.31 Aligned_cols=223 Identities=22% Similarity=0.408 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 4 ~l~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 75 (252)
T PRK14256 4 KVKLEQLNVHF--------GKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYD 75 (252)
T ss_pred EEEEEEEEEEe--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996531 2 258999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+++.+|++||+.++.... ......+.++++.++++.+++.+...... +..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (252)
T PRK14256 76 RGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAMELSGG 152 (252)
T ss_pred ccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcCcCCHH
Confidence 34678999999999999899999998765322 11223344556788899999854221111 1345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|++++.|+
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDLVECGE 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14256 231 TKKIF 235 (252)
T ss_pred HHHHH
Confidence 88864
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=347.62 Aligned_cols=216 Identities=26% Similarity=0.460 Sum_probs=184.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+..| +..++|++|||++++||+++|+||||+|||||||+|+|... +.+|+|.++|+|++.
T Consensus 3 mL~v~~l~~~Y--------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~ 72 (237)
T COG0410 3 MLEVENLSAGY--------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPP 72 (237)
T ss_pred ceeEEeEeecc--------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCH
Confidence 68999999988 56789999999999999999999999999999999999653 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..|.-|+||||...+||.|||+|||..++..+.. +...+...+++.+.|- |.+..+..- ..|||||||
T Consensus 73 ~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~a-----G~LSGGEQQ 143 (237)
T COG0410 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRA-----GTLSGGEQQ 143 (237)
T ss_pred HHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcc-----cCCChHHHH
Confidence 3467899999999999999999999998654321 1112222666777663 455555443 479999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++-++.. .+.+++||.+||.+|+|++.|+.+
T Consensus 144 MLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G~~~ 222 (237)
T COG0410 144 MLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSGTAA 222 (237)
T ss_pred HHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEecCHH
Confidence 999999999999999999999999999999999999999976 779999988854 577899999999999999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 223 eL~ 225 (237)
T COG0410 223 ELL 225 (237)
T ss_pred HHh
Confidence 985
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=364.24 Aligned_cols=220 Identities=27% Similarity=0.460 Sum_probs=187.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~--~G~I~~~G~~~~~- 225 (640)
.|+++|+++.|. ...+++|+||||+|++||+++|+||||||||||+++|+|.+. |.. +|+|.++|.++..
T Consensus 5 ~l~i~~l~~~~~------~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g~~G~i~i~g~~~~~~ 77 (282)
T PRK13640 5 IVEFKHVSFTYP------DSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDNPNSKITVDGITLTAK 77 (282)
T ss_pred eEEEEEEEEEcC------CCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCCCCcEEEECCEECCcC
Confidence 699999999982 123469999999999999999999999999999999999653 332 2999999998752
Q ss_pred ---hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ---SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++++|||+|++. +++.+||.|||.|..... ..+.++..+++.++++.+||.+..++ .++.||||||
T Consensus 78 ~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~~~LS~G~~ 149 (282)
T PRK13640 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS-----EPANLSGGQK 149 (282)
T ss_pred CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC-----CcccCCHHHH
Confidence 34678999999974 566789999999865322 23455566778999999999876664 4579999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||++++|++|++++.|++
T Consensus 150 qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999865 8999999999764 4 57999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=363.31 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 11 ~l~i~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 80 (265)
T PRK10575 11 TFALRNVSFRV--------PGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSS 80 (265)
T ss_pred eEEEeeEEEEE--------CCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCH
Confidence 69999999998 24579999999999999999999999999999999999543 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++.++|++|++.+++.+||.||+.++....... ........+++.++++.++|.+..++. +..||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qr 155 (265)
T PRK10575 81 KAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----VDSLSGGERQR 155 (265)
T ss_pred HHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCHHHHHH
Confidence 34667999999988888899999998753211000 011123345688899999997666654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++|++++.|++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~~~~~ 234 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQGTPAE 234 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHHH
Confidence 99999999999999999999999999999999999999765 899999999975 4778899999999999999999887
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 235 ~~ 236 (265)
T PRK10575 235 LM 236 (265)
T ss_pred hc
Confidence 64
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-43 Score=353.32 Aligned_cols=210 Identities=29% Similarity=0.493 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++....++
T Consensus 1 l~l~~v~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~~~ 70 (223)
T TIGR03740 1 LETKNLSKRF--------GKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKDLH 70 (223)
T ss_pred CEEEeEEEEE--------CCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccccc
Confidence 4789999988 24579999999999999999999999999999999999653 5689999999987543345
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.+++.+|++||+.+....+. .. .+++.++++.+||.+..+.. +..||||||||++||||
T Consensus 71 ~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~lara 138 (223)
T TIGR03740 71 KIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKK-----AKQFSLGMKQRLGIAIA 138 (223)
T ss_pred cEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhh-----HhhCCHHHHHHHHHHHH
Confidence 79999999999988999999988654321 11 23577889999998766653 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.|++.+
T Consensus 139 l~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 139 LLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999877899999999975 4678899999999999999998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-43 Score=361.04 Aligned_cols=219 Identities=26% Similarity=0.450 Sum_probs=184.8
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 2 l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 71 (256)
T TIGR03873 2 LRLSRVSWSA--------GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRR 71 (256)
T ss_pred ceEEeEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHH
Confidence 6899999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.++|.+..++. +..||||||||+
T Consensus 72 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl 146 (256)
T TIGR03873 72 ARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRD-----MSTLSGGERQRV 146 (256)
T ss_pred HHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHH
Confidence 3456799999998877789999999885311000 0011123345688899999997666653 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+.+|+++||||||+|||+.++..+.+.|++++++|.|||+++|++. .+.++||+|++|++|++++.|+++++.
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 225 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPREVL 225 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHHHhh
Confidence 9999999999999999999999999999999999999877899999999976 467899999999999999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=363.34 Aligned_cols=220 Identities=23% Similarity=0.395 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 76 (265)
T PRK10253 7 RLRGEQLTLGY--------GKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYAS 76 (265)
T ss_pred EEEEEEEEEEE--------CCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCH
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+||+||+.++.....+. ....+...+++.++++.+||.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~Gq~qr 151 (265)
T PRK10253 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQ-----SVDTLSGGQRQR 151 (265)
T ss_pred HHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcC-----CcccCChHHHHH
Confidence 34567999999999998899999998753111000 00112334567889999999765554 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.++||++++|++|++++.|++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 230 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQGAPKE 230 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4778999999999999999999888
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 231 ~~ 232 (265)
T PRK10253 231 IV 232 (265)
T ss_pred Hh
Confidence 65
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=359.85 Aligned_cols=222 Identities=24% Similarity=0.421 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 12 ~l~i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~ 83 (259)
T PRK14274 12 VYQINGMNLWY--------GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83 (259)
T ss_pred eEEEeeEEEEE--------CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996532 21 58999999998741
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++. ||+||+.+...... ...+++..++++++++.+++.+...... +..+.+||||
T Consensus 84 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LS~G 159 (259)
T PRK14274 84 GKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRL-HTQALSLSGG 159 (259)
T ss_pred cccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCCHH
Confidence 346789999999999985 99999998653321 1123444566788899988854211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|+++..|+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 237 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYMGELVECND 237 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999865 789999999975 4778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 238 ~~~~~ 242 (259)
T PRK14274 238 TNKMF 242 (259)
T ss_pred HHHHh
Confidence 98864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=359.64 Aligned_cols=223 Identities=22% Similarity=0.392 Sum_probs=185.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++.
T Consensus 4 ~l~i~~v~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~ 75 (258)
T PRK14241 4 RIDVKDLNIYY--------GSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYG 75 (258)
T ss_pred cEEEeeEEEEE--------CCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccc
Confidence 58999999998 245799999999999999999999999999999999996542 1 25899999999863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..+++.++|++|++.+++.+||+||+.++...+. .....+.++++.++++.+||.+...... +..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 152 (258)
T PRK14241 76 PGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRL-DKPGGGLSGG 152 (258)
T ss_pred cccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHh-hCCcccCCHH
Confidence 1346789999999999999999999998754321 1123444567888899998842111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc------CCe
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGS 373 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------~G~ 373 (640)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||+|++|+ +|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCce
Confidence 99999999999999999999999999999999999999999964 689999999975 4678899999996 799
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 231 i~~~~~~~~~~ 241 (258)
T PRK14241 231 LVEIDDTEKIF 241 (258)
T ss_pred EEecCCHHHHH
Confidence 99999998874
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=389.66 Aligned_cols=360 Identities=26% Similarity=0.345 Sum_probs=275.4
Q ss_pred HHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhHhh
Q 006571 14 KSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAALSR 93 (640)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 93 (640)
-+|.....+..++.+.-+.|+|+|-+-.+.+.++..+.-....+..+.-....|.+.-.|+.+-+.+|.--+-.|+-|+-
T Consensus 190 A~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi 269 (580)
T COG4618 190 ASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVI 269 (580)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEE
Confidence 35556666667777777788999999888888888877766666655545555666566888888888888889999999
Q ss_pred hhhhhhhhhhccc---cCCCCccccc-cC-CC-----CCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEeecc
Q 006571 94 ASSASLGLSFSFT---GFTMPPDEIA-DS-KP-----FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKG 163 (640)
Q Consensus 94 ~~~~~~g~~~~~~---~~~~~~~~~~-~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~~~~ 163 (640)
.+.++.|++..=+ +..+.+.+.. .. +. .++.++.+-+...+...+. +..|.....|.++++++.
T Consensus 270 ~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~-m~LP~P~g~L~Ve~l~~~----- 343 (580)
T COG4618 270 KGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAER-MPLPAPQGALSVERLTAA----- 343 (580)
T ss_pred cCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC-CCCCCCCceeeEeeeeec-----
Confidence 9988888876533 2122111111 00 00 1222222223222222222 234444567999999983
Q ss_pred ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCC
Q 006571 164 MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV 239 (640)
Q Consensus 164 ~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~ 239 (640)
++..++++|+|+||.+.+||.+||+||||||||||.|+|.|.. ++.+|.|.+||-++++ .+-++|||.||+-.
T Consensus 344 -PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w--~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVe 420 (580)
T COG4618 344 -PPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW--PPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVE 420 (580)
T ss_pred -CCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc--ccCCCcEEecchhhhcCCHHHhccccCcCcccce
Confidence 3456789999999999999999999999999999999999954 3569999999998853 46788999999999
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEE
Q 006571 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFL 319 (640)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlL 319 (640)
||+. ||.|||.=......++.+-++.+.+.++|++- .|++++||.||+.. ..||||||||+++||||..||.+++|
T Consensus 421 LF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVL 496 (580)
T COG4618 421 LFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVL 496 (580)
T ss_pred ecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEe
Confidence 9987 99999973221111111223344556788874 56999999999754 67999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
|||-|+||.+.+..+.+.|.+++++|.|+|+++|+|+ +...+|+|++|++|++-.+|+.+|++....
T Consensus 497 DEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~~~FG~r~eVLa~~~ 563 (580)
T COG4618 497 DEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLAKVL 563 (580)
T ss_pred cCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChHHhcCCHHHHHHHhc
Confidence 9999999999999999999999999999999999987 578899999999999999999999987654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=357.66 Aligned_cols=222 Identities=28% Similarity=0.443 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CCC--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EPT--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~~--~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .|. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14239 5 ILQVSDLSVYY--------NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS 76 (252)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcC
Confidence 58999999998 34579999999999999999999999999999999999642 231 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+++ +||+||+.++...+ + ........+++.++++.+++.+..... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 152 (252)
T PRK14239 77 PRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDR-LHDSALGLSGG 152 (252)
T ss_pred cccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHH-HhcCcccCCHH
Confidence 34678999999999997 79999999875432 1 112233456678888888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. ++.+.||+|++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T PRK14239 153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLDGDLIEYND 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 689999999975 4778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14239 231 TKQMF 235 (252)
T ss_pred HHHHH
Confidence 98874
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=360.61 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=187.7
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~ 223 (640)
...|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|+++
T Consensus 18 ~~~l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~ 89 (267)
T PRK14237 18 EIALSTKDLHVYY--------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI 89 (267)
T ss_pred CeEEEEeeEEEEE--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEc
Confidence 4479999999998 346799999999999999999999999999999999996542 14689999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. ..++.++||+|++.+++ .||+||+.++.... + ...+.+.++++.++++.++|.+..+... +..+..||
T Consensus 90 ~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 165 (267)
T PRK14237 90 NRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDL-HKSALTLS 165 (267)
T ss_pred ccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhh-cCCcccCC
Confidence 42 24678999999999887 59999999875321 1 1233445567888999999864322222 24567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||++. ++.++||++++|++|++++.
T Consensus 166 ~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~ 243 (267)
T PRK14237 166 GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYLGDLIEY 243 (267)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999964 789999999976 47789999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 244 g~~~~~~ 250 (267)
T PRK14237 244 DKTRNIF 250 (267)
T ss_pred CCHHHHh
Confidence 9998874
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-43 Score=355.50 Aligned_cols=216 Identities=27% Similarity=0.501 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| +++++|+|+||++.+||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 i~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~ 70 (237)
T TIGR00968 1 IEIANISKRF--------GSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHAR 70 (237)
T ss_pred CEEEEEEEEE--------CCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4789999998 24579999999999999999999999999999999999653 468999999998753 33
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+|+.+|+.||+.+....+ ........+.+.++++.+++.+..++. +..|||||+||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (237)
T TIGR00968 71 DRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRY-----PNQLSGGQRQRVALA 142 (237)
T ss_pred hcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHHHHHHHHHH
Confidence 567999999999999899999999875432 122334456778999999997666653 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~~ 219 (237)
T TIGR00968 143 RALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEVY 219 (237)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998875 899999999975 467889999999999999999988874
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=361.65 Aligned_cols=226 Identities=26% Similarity=0.457 Sum_probs=193.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC--
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS-- 224 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~-- 224 (640)
|+++|++.+|... .+..++++||||+|++||++||+|.|||||||+.+.|.|.+..+ ..+|+|.++|+++.
T Consensus 2 L~v~nL~v~f~~~----~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l 77 (316)
T COG0444 2 LEVKNLSVSFPTD----AGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSL 77 (316)
T ss_pred ceEeeeEEEEecC----CccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccC
Confidence 6899999998532 23467999999999999999999999999999999999977533 26799999999763
Q ss_pred -h----hcc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 -K----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 -~----~~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+ .+| +.|+||||++ .|.|.+||.+.+.-...... .. .+++..+++.++|+.+||++-.. +.+.++.+
T Consensus 78 ~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~--~~~~YPhe 153 (316)
T COG0444 78 SEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPER--RLKSYPHE 153 (316)
T ss_pred CHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHH--HHhhCCcc
Confidence 2 223 5799999996 68899999999987665432 12 45667788999999999986422 33568999
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++.+ .|.++|+||||+. .+.++||||+||+.|+|
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMYaG~i 232 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMYAGRI 232 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEECcEE
Confidence 999999999999999999999999999999999999999999999986 5999999999976 47899999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
|+.|+.+++.
T Consensus 233 VE~g~~~~i~ 242 (316)
T COG0444 233 VEEGPVEEIF 242 (316)
T ss_pred EEeCCHHHHh
Confidence 9999999875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=356.84 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=182.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 72 (241)
T PRK14250 3 EIEFKEVSYSS--------FGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDV 72 (241)
T ss_pred eEEEEeEEEEe--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCh
Confidence 48999999998 34579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++ .||+||+.+....+ . ....++.++++.++|+ +..++ .+..||||||||
T Consensus 73 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 139 (241)
T PRK14250 73 IDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATR-----DVKNLSGGEAQR 139 (241)
T ss_pred HHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhC-----CcccCCHHHHHH
Confidence 34678999999999987 69999998754321 1 1234677889999996 34443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 140 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (241)
T PRK14250 140 VSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAKTYD 218 (241)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999864 899999999975 4677899999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 219 ~~ 220 (241)
T PRK14250 219 FF 220 (241)
T ss_pred Hh
Confidence 64
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=351.91 Aligned_cols=214 Identities=31% Similarity=0.468 Sum_probs=179.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|..+ ...+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 5 ~~l~~~~l~~~~~~~----~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~ 78 (228)
T PRK10584 5 NIVEVHHLKKSVGQG----EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMD 78 (228)
T ss_pred ceEEEeeeEEEccCC----CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCC
Confidence 369999999998310 011359999999999999999999999999999999999643 468999999998742
Q ss_pred --h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 --S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 --~---~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
. . ++.++|++|++.+++.+||.||+.+....+ .....+..+++.++++.++|.+..+.. +..||||
T Consensus 79 ~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 150 (228)
T PRK10584 79 EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL-----PAQLSGG 150 (228)
T ss_pred HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC-----hhhCCHH
Confidence 1 2 257999999999999999999999865332 123344566788999999998766543 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+ +.||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999764 899999999976 34 56999999999999753
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=355.90 Aligned_cols=222 Identities=24% Similarity=0.433 Sum_probs=183.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 74 (250)
T PRK14240 3 KISVKDLDLFY--------GDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYK 74 (250)
T ss_pred eEEEEEEEEEE--------CCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996432 2 158999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++||+|++.+++ +|++||+.++..... ....++..+++.++++.+++.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14240 75 SDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRL-KKSALGLSGG 150 (250)
T ss_pred cccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHH-hcCCCCCCHH
Confidence 34678999999999887 899999998754321 1123344567788888888753211111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 151 QQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 889999999965 5778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14240 229 TVDLF 233 (250)
T ss_pred HHHHH
Confidence 88864
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=352.86 Aligned_cols=216 Identities=28% Similarity=0.471 Sum_probs=187.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| +++++|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 l~~~~l~~~~--------~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~ 70 (232)
T cd03300 1 IELENVSKFY--------GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPH 70 (232)
T ss_pred CEEEeEEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChh
Confidence 4689999998 34579999999999999999999999999999999999653 468999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|+.||+.+....+. .......++++++++.+||.+..++. +..||||||||++||
T Consensus 71 ~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~la 142 (232)
T cd03300 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIA 142 (232)
T ss_pred hcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHH
Confidence 5689999999999988999999998754331 23344456778899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+.+|+++||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 143 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~~ 219 (232)
T cd03300 143 RALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEIY 219 (232)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHHH
Confidence 9999999999999999999999999999999999864 899999999975 467889999999999999999987764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=359.27 Aligned_cols=226 Identities=27% Similarity=0.445 Sum_probs=197.7
Q ss_pred eeEEEEeEEEEEeecc----------c------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC
Q 006571 148 IYLKFTDVTYKVILKG----------M------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT 211 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~----------~------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~ 211 (640)
..|+++||++-+..+. . .+.+-..-++|+||+|+.||++.|||-||||||||+++|.+ +.+|
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~Nr-Liep- 80 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNR-LIEP- 80 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhc-cCCC-
Confidence 3588999987664210 0 01122346899999999999999999999999999999995 5554
Q ss_pred cccEEEECCEeCCh-------hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc
Q 006571 212 VGGSITYNDHPYSK-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (640)
Q Consensus 212 ~~G~I~~~G~~~~~-------~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (640)
+.|+|+++|.++.+ .+ |+++++|||...|+|+.||.||..|+...+ .++++++++++.++|+.+||...
T Consensus 81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~ 157 (386)
T COG4175 81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY 157 (386)
T ss_pred CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence 58999999998742 23 567999999999999999999999998775 57899999999999999999988
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~ 362 (640)
.+. ++++|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|.++ ++|||++|||+. +.+++
T Consensus 158 ~~~-----yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlri 231 (386)
T COG4175 158 ADK-----YPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRI 231 (386)
T ss_pred hhc-----CcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhc
Confidence 875 56899999999999999999999999999999999999999999999999754 899999999976 57899
Q ss_pred cCEEEEEcCCeEEEecChHHHH
Q 006571 363 FDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 363 ~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
-|||.+|++|+|+..|+|+|++
T Consensus 232 G~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 232 GDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred cceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999987
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=443.11 Aligned_cols=347 Identities=20% Similarity=0.262 Sum_probs=234.3
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..+..++..++..+.++|++++.+||++|+++..+.++|.+........+.+.....+.+.........-..+..++.|+
T Consensus 224 ~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~ 303 (1466)
T PTZ00265 224 NKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGT 303 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666688999999999999999999999999999987666555444332222222211111111122334456777
Q ss_pred hHhhhhh--------hhhh--------hhhccccC--------CCCccccccCCCCCCCCCccccccccCCCCCCCCCCC
Q 006571 90 ALSRASS--------ASLG--------LSFSFTGF--------TMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPT 145 (640)
Q Consensus 90 ~~~~~~~--------~~~g--------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (640)
.++..+. .+.| .+.++..+ .+..+..+..+.+...+..+.++.... . ...+.
T Consensus 304 ~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~---~-~~~~~ 379 (1466)
T PTZ00265 304 RIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVENNDD---G-KKLKD 379 (1466)
T ss_pred HHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---C-ccCCC
Confidence 7666541 1222 22211110 011112222222222221111111000 0 00111
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE-CCEeCC
Q 006571 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-NDHPYS 224 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~-~G~~~~ 224 (640)
. ..|+++||+|+|+. ++++++|+|+||+|++||++||+||||||||||+++|+|. ++ +.+|+|++ ||.++.
T Consensus 380 ~-~~I~~~nVsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-~~-p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 380 I-KKIQFKNVRFHYDT-----RKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-YD-PTEGDIIINDSHNLK 451 (1466)
T ss_pred C-CcEEEEEEEEEcCC-----CCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-cc-CCCCeEEEeCCcchh
Confidence 1 26999999999831 1235799999999999999999999999999999999984 44 45899999 567764
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC----------CC-----------------------------C
Q 006571 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL----------PN-----------------------------T 261 (640)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~----------~~-----------------------------~ 261 (640)
+.+|++||||+|++.+|+. ||+|||.++..... +. .
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 2468889999999999975 99999999742100 00 0
Q ss_pred c---------cHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 262 L---------TKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 262 ~---------~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
. .....++.+.++++.+ .|++.+||.+|.. ...||||||||++|||||+++|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~-g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN-ASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 0001123455555544 4567788888764 567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
||+.++..|.+.|+++.+ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999975 58999999999864 4 789999999986
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=364.56 Aligned_cols=221 Identities=24% Similarity=0.405 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++||+++|..+. ...+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~---~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 80 (289)
T PRK13645 6 DIILDNVSYTYAKKT---PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLK 80 (289)
T ss_pred eEEEEEEEEEeCCCC---ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccccc
Confidence 589999999983110 001359999999999999999999999999999999999653 56899999998863
Q ss_pred -----hhccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcC
Q 006571 225 -----KSLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (640)
..+++.|+||+|++. +++ .||+||+.++.... ....++..+++.++++.++|+ +..++ .+..|
T Consensus 81 ~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~-----~~~~L 151 (289)
T PRK13645 81 KIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKR-----SPFEL 151 (289)
T ss_pred ccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcC-----ChhhC
Confidence 134678999999973 454 59999999865322 123444456678899999995 44444 35689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+++
T Consensus 152 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 152 SGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEGKVI 230 (289)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 477899999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 231 ~~g~~~~~~ 239 (289)
T PRK13645 231 SIGSPFEIF 239 (289)
T ss_pred EeCCHHHHh
Confidence 999988864
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=360.63 Aligned_cols=219 Identities=24% Similarity=0.419 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|.. ...+++|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~-----~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~ 76 (277)
T PRK13642 4 ILEVENLVFKYEK-----ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENV 76 (277)
T ss_pred eEEEEEEEEEcCC-----CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCH
Confidence 6899999999831 123469999999999999999999999999999999999653 568999999998752
Q ss_pred -hccCcEEEEccCCC-CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDV-LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~-l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++. .++..||.|||.++.... ....++..++++++++.+||.+..++ .+..||||||||
T Consensus 77 ~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qr 148 (277)
T PRK13642 77 WNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTR-----EPARLSGGQKQR 148 (277)
T ss_pred HHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhC-----CcccCCHHHHHH
Confidence 35678999999974 566789999999865422 22344455678899999999876665 357899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+|++|++|++++.|++++
T Consensus 149 v~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 149 VAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 9999999999764 4 4699999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 227 ~~ 228 (277)
T PRK13642 227 LF 228 (277)
T ss_pred Hh
Confidence 75
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-44 Score=384.71 Aligned_cols=215 Identities=32% Similarity=0.561 Sum_probs=185.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.++++||+|+|+ ..+.++|+|+||++++||.+||+|+||||||||+.+|+|.. + +++|+|.+||.++.
T Consensus 336 ~l~~~~vsF~y~------~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~-~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 336 ALELRNVSFTYP------GQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-D-PQQGSITLNGVEIASLDE 407 (573)
T ss_pred eeeeccceeecC------CCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-C-CCCCeeeECCcChhhCCh
Confidence 799999999994 24557999999999999999999999999999999999854 3 46899999999874
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCC
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (640)
+.+|+.|++++|...+|.+ |+++||.++. | +.++++ +.++++.+|| +++.||.+|+. .+.||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDEe----l~~aL~qvgL~~l~~~~p~gl~t~lge~-G~~LS 476 (573)
T COG4987 408 QALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDEE----LWAALQQVGLEKLLESAPDGLNTWLGEG-GRRLS 476 (573)
T ss_pred hhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHHH----HHHHHHHcCHHHHHHhChhhhhchhccC-CCcCC
Confidence 2478899999999999976 9999999863 2 233333 4455555554 44677778754 46799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|++|.++++|||||.|||+.++.++++.|.+.++ |+|+|++||++.. .+.||||++|++|++++.
T Consensus 477 GGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~drIivl~~Gkiie~ 553 (573)
T COG4987 477 GGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDRIIVLDNGKIIEE 553 (573)
T ss_pred chHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCEEEEEECCeeeec
Confidence 9999999999999999999999999999999999999999998775 9999999999875 578999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|++.+++.
T Consensus 554 G~~~~Ll~ 561 (573)
T COG4987 554 GTHAELLA 561 (573)
T ss_pred CCHHhhhc
Confidence 99999875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=355.26 Aligned_cols=223 Identities=24% Similarity=0.387 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (640)
+.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~ 74 (251)
T PRK14270 3 IKMESKNLNLWY--------GEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIY 74 (251)
T ss_pred cEEEEEEeEEEE--------CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecc
Confidence 368999999998 245799999999999999999999999999999999996532 1 25899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. ..++.++|++|++.+++ +|++||+.+...... .....+..+++.++++.++|.+..... -+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~ 150 (251)
T PRK14270 75 DKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDD-LKKSALKLSG 150 (251)
T ss_pred cccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhH-hhCCcccCCH
Confidence 2 34677999999999997 899999998754321 112334455678889999875321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||+|+.+|+||||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999876 689999999975 577889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14270 229 KTEKIF 234 (251)
T ss_pred CHHHHh
Confidence 998874
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=348.21 Aligned_cols=208 Identities=25% Similarity=0.443 Sum_probs=175.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 1 i~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~ 68 (211)
T cd03298 1 VRLDKIRFSYG--------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPA 68 (211)
T ss_pred CEEEeEEEEeC--------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHh
Confidence 47899999982 222 39999999999999999999999999999999653 568999999998743 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.++..... .. ....++++.++++.+||.+..++. +..||||||||++||
T Consensus 69 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~ia 140 (211)
T cd03298 69 DRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRL-----PGELSGGERQRVALA 140 (211)
T ss_pred HccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 5679999999999999999999987643211 11 223455688999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|
T Consensus 141 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 141 RVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999754 899999999965 466889999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=355.92 Aligned_cols=223 Identities=23% Similarity=0.392 Sum_probs=183.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.-+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++..
T Consensus 5 ~~~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 76 (251)
T PRK14244 5 HASVKNLNLWY--------GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYS 76 (251)
T ss_pred EEEeeeEEEEE--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHh
Confidence 35789999998 245799999999999999999999999999999999996531 2 358999999998632
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+++. ||+||+.+....+. ........++.+.++++.+||.+...+.+ +..+..||||
T Consensus 77 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G 153 (251)
T PRK14244 77 VDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAFELSGG 153 (251)
T ss_pred cccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChhhCCHH
Confidence 246789999999999986 99999998743321 11122334456788899999965322111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ |+|||++||++. .+.+.||+|++|++|++++.|+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 231 (251)
T PRK14244 154 QQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRIVEYNT 231 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 899999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 232 ~~~~~ 236 (251)
T PRK14244 232 TQEIF 236 (251)
T ss_pred HHHHh
Confidence 88764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=375.31 Aligned_cols=206 Identities=24% Similarity=0.410 Sum_probs=180.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE----eCCh----h---cc-CcEEEEc
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH----PYSK----S---LK-SKIGFVT 235 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~----~~~~----~---~~-~~i~yV~ 235 (640)
+...+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|+++|+ ++.. . .| ++++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999653 56899999996 3321 1 22 5799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~ 315 (640)
|++.++|.+||+||+.|+...+ ..++.+.++++.++++.+||.+..+.. +.+|||||||||+|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~-----~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKK-----PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999986542 234566677889999999998776654 46899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||||||+|||+.++..+.+.|+++.++ |+|||++||++. ++.++||+|++|++|+++..|+++++.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999865 899999999975 577899999999999999999999875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=354.48 Aligned_cols=223 Identities=25% Similarity=0.378 Sum_probs=183.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~---~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+.+.+ .+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~ 75 (252)
T PRK14272 4 LLSAQDVNIYY--------GDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75 (252)
T ss_pred EEEEeeeEEEE--------CCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEccc
Confidence 68999999998 34579999999999999999999999999999999999653212 37999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+++.+|+.||+.++..... ....++..+.+.+.++.+++.+..... .+..+..||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 152 (252)
T PRK14272 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDR-LKTPATGLSGG 152 (252)
T ss_pred CccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhh-hcCCcccCCHH
Confidence 346679999999999998999999987653221 112333445567777777664211111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999865 799999999976 4677899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14272 231 TDQLF 235 (252)
T ss_pred HHHHH
Confidence 98874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=351.47 Aligned_cols=214 Identities=26% Similarity=0.455 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++|. ++. .|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~~~--------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 69 (232)
T PRK10771 2 LKLTDITWLYH--------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPS 69 (232)
T ss_pred eEEEEEEEEEC--------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChh
Confidence 78999999982 222 38999999999999999999999999999999643 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|+.||+.++..... .. .+...+++.++++.+||++..++. +..||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la 141 (232)
T PRK10771 70 RRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARL-----PGQLSGGQRQRVALA 141 (232)
T ss_pred hccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCC-----cccCCHHHHHHHHHH
Confidence 4679999999999999999999987532111 11 223456688999999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~~ 218 (232)
T PRK10771 142 RCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDELL 218 (232)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467889999999999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=367.77 Aligned_cols=224 Identities=21% Similarity=0.368 Sum_probs=187.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++|++++|. .+.+++|+|+||+|++||++||+||||||||||+++|+|.... .+.+|+|.+||+++.
T Consensus 79 ~~i~~~nls~~y~------~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~ 152 (329)
T PRK14257 79 NVFEIRNFNFWYM------NRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152 (329)
T ss_pred ceEEEEeeEEEec------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 4799999999983 1345799999999999999999999999999999999986531 135899999999985
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
..+++.++||||++.+|+ .|++|||.|+.... ... .+..++.+.++++.++|.+..++.++ ..+..||
T Consensus 153 ~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~~~~LS 227 (329)
T PRK14257 153 SKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KAGNALS 227 (329)
T ss_pred ccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CCcccCC
Confidence 245778999999999996 69999999875321 122 22334457788888888654444443 4567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.+.||||++|++|++++.
T Consensus 228 gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G~i~e~ 305 (329)
T PRK14257 228 GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQGWIEEA 305 (329)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999876 799999999975 46678999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 306 g~~~~l~ 312 (329)
T PRK14257 306 GETKTIF 312 (329)
T ss_pred CCHHHHh
Confidence 9999985
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=354.35 Aligned_cols=222 Identities=24% Similarity=0.444 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~ 74 (250)
T PRK14262 3 IIEIENFSAYY--------GEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74 (250)
T ss_pred eEEEEeeEEEe--------CCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996532 1 268999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++ +||+||+.++..... .......++.+.+.++.+++.+..+.. .+..+.+||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 150 (250)
T PRK14262 75 PQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSE-LNKPGTRLSGG 150 (250)
T ss_pred chhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHH-HhCChhhcCHH
Confidence 34678999999999997 899999998754321 112333455678888888885422111 23456789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++|+++..|+
T Consensus 151 q~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i~~~g~ 228 (250)
T PRK14262 151 QQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGELIEYGP 228 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14262 229 TREIV 233 (250)
T ss_pred HHHHH
Confidence 98875
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=359.27 Aligned_cols=222 Identities=23% Similarity=0.394 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+++|+|.++|+++.
T Consensus 12 ~~l~i~nl~~~~--------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~ 83 (269)
T PRK14259 12 IIISLQNVTISY--------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLY 83 (269)
T ss_pred ceEEEEeEEEEE--------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 479999999998 345799999999999999999999999999999999996431 146899999999863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..+++.++||+|++.+|+. ||+||+.+....+ .... ..++++.++++.+++....+.. -+..+..|||
T Consensus 84 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 157 (269)
T PRK14259 84 DPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDK-LNESGYSLSG 157 (269)
T ss_pred cccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhh-hCCCcccCCH
Confidence 2346779999999999984 9999999876432 1122 2345567788888774321111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-------
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK------- 371 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~------- 371 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++++|++
T Consensus 158 G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~~~~~~~~ 235 (269)
T PRK14259 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFNAEEVEGGS 235 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999864 789999999975 57789999999996
Q ss_pred ----CeEEEecChHHHHH
Q 006571 372 ----GSLLYFGKASEAMA 385 (640)
Q Consensus 372 ----G~iv~~G~~~~~~~ 385 (640)
|++++.|+++++..
T Consensus 236 ~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 236 GGKVGYLVEFNETKKIFN 253 (269)
T ss_pred ccccceEEEeCCHHHHHh
Confidence 67999999988753
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=373.81 Aligned_cols=209 Identities=29% Similarity=0.467 Sum_probs=180.7
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------- 225 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-------- 225 (640)
||+++| +++. + |+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~--------~~~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~ 71 (354)
T TIGR02142 4 RFSKRL--------GDFS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLP 71 (354)
T ss_pred EEEEEE--------CCEE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccc
Confidence 788887 2333 4 9999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.++||+|++.+|+.+||+||+.|+.... ...+.+++++++++.+||.+..++. +..|||||||||+
T Consensus 72 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGqkqRva 141 (354)
T TIGR02142 72 PEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRL-----PGRLSGGEKQRVA 141 (354)
T ss_pred hhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHH
Confidence 24678999999999999999999999875421 1233456788999999998766654 5789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++..+||+|++|++|++++.|+++++.
T Consensus 142 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 142 IGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 999999999999999999999999999999999999875 899999999975 577889999999999999999998875
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 221 ~ 221 (354)
T TIGR02142 221 A 221 (354)
T ss_pred c
Confidence 3
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=351.38 Aligned_cols=215 Identities=30% Similarity=0.541 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++|++++| ++ ++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++.. ..
T Consensus 1 l~~~~l~~~~--------~~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~ 69 (235)
T cd03299 1 LKVENLSKDW--------KE-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPE 69 (235)
T ss_pred CeeEeEEEEe--------CC-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChh
Confidence 4689999988 22 38999999999999999999999999999999999653 568999999998753 23
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|+.||+.+..... .....+..+.+.++++.+||.+..++. ++.||||||||++||
T Consensus 70 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la 141 (235)
T cd03299 70 KRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRK-----PETLSGGEQQRVAIA 141 (235)
T ss_pred HcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcC-----cccCCHHHHHHHHHH
Confidence 568999999999999899999999865332 123444556778899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+++++.
T Consensus 142 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 142 RALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999999999999999999999999998764 899999999975 467789999999999999999988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=372.61 Aligned_cols=207 Identities=28% Similarity=0.483 Sum_probs=180.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|++ ||+++| +++. + |+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~-~l~k~~--------~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~ 68 (352)
T PRK11144 2 LEL-NFKQQL--------GDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKG 68 (352)
T ss_pred eEE-EEEEEe--------CCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccc
Confidence 677 899988 2222 3 8999999999999999999999999999999653 468999999998642
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.++||+|++.+|+.+||+||+.|+.. ....++++++++.+||.+..+.. +..||||||
T Consensus 69 ~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~ 134 (352)
T PRK11144 69 ICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRY-----PGSLSGGEK 134 (352)
T ss_pred cccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCC-----cccCCHHHH
Confidence 246789999999999999999999998642 12345688899999998766653 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++..+||++++|++|+++..|++
T Consensus 135 qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 213 (352)
T PRK11144 135 QRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPL 213 (352)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCH
Confidence 9999999999999999999999999999999999999999865 899999999975 57789999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 214 ~~i~ 217 (352)
T PRK11144 214 EEVW 217 (352)
T ss_pred HHHH
Confidence 9885
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=391.97 Aligned_cols=220 Identities=22% Similarity=0.334 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. | +.+|+|.++|+++..
T Consensus 5 ~l~~~nl~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~G~i~~~g~~~~~~~ 75 (506)
T PRK13549 5 LLEMKNITKTF--------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP-HGTYEGEIIFEGEELQASN 75 (506)
T ss_pred eEEEeeeEEEe--------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCC
Confidence 69999999998 34579999999999999999999999999999999999654 3 368999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..+.. +.+|||||||
T Consensus 76 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkq 150 (506)
T PRK13549 76 IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATP-----VGNLGLGQQQ 150 (506)
T ss_pred HHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHHHHH
Confidence 13567999999999999999999999875422101123344456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~ 229 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTRPAAG 229 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeeccccc
Confidence 999999999999999999999999999999999999999877999999999975 4678899999999999999999876
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 230 ~ 230 (506)
T PRK13549 230 M 230 (506)
T ss_pred C
Confidence 4
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=358.11 Aligned_cols=226 Identities=20% Similarity=0.419 Sum_probs=186.5
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+++|..+.. ...+.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGD 81 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCc
Confidence 5899999999831100 00123579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHH
Q 006571 226 --SLKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++||+|++. +++.+||.+++.+...... .....+..+++.++++.+||. +..+. .+..|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~ 154 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASY-----YPHMLAPGQ 154 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhc-----CchhcCHHH
Confidence 23457999999975 6778899999988654321 123344556788999999994 44443 346899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||++. .+..+||++++|++|++++.|+
T Consensus 155 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 155 KQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999999864 899999999975 5777899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 234 ~~~~~ 238 (267)
T PRK15112 234 TADVL 238 (267)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=357.28 Aligned_cols=223 Identities=24% Similarity=0.377 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|....+ +.+|+|.++|.++.
T Consensus 24 ~~l~~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~ 95 (272)
T PRK14236 24 TALEVRNLNLFY--------GDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIY 95 (272)
T ss_pred cEEEEEEEEEEE--------CCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECc
Confidence 369999999998 2457999999999999999999999999999999999965421 36899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.++|++|++.+|+. ||+||+.+...... ....+..++++.++++.+++.+...+.. +..+..|||
T Consensus 96 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 171 (272)
T PRK14236 96 DKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRL-HENAFGLSG 171 (272)
T ss_pred ccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCcccCCH
Confidence 2 346789999999999986 99999998754321 1122334456788888888864211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||++++|++|++++.|
T Consensus 172 Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999976 789999999975 467889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 250 ~~~~~~ 255 (272)
T PRK14236 250 DTDTLF 255 (272)
T ss_pred CHHHHh
Confidence 988764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=356.17 Aligned_cols=222 Identities=24% Similarity=0.395 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~--~~~G~I~~~G~~~~~ 225 (640)
.|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .+ +.+|+|.++|+++..
T Consensus 21 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 92 (268)
T PRK14248 21 ILEVKDLSIYY--------GEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD 92 (268)
T ss_pred eEEEEEEEEEe--------CCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence 69999999998 34579999999999999999999999999999999999542 11 468999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++. |++||+.++..... .......++.+.+.++.+++.+..... -+..+..||||
T Consensus 93 ~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG 168 (268)
T PRK14248 93 SNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDR-LHSSALSLSGG 168 (268)
T ss_pred ccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHH-HhcCcccCCHH
Confidence 346789999999999985 99999998643221 112223345577788888875321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|+
T Consensus 169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~~~ 246 (268)
T PRK14248 169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLNGDLVEYDQ 246 (268)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999965 689999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 247 ~~~~~ 251 (268)
T PRK14248 247 TEQIF 251 (268)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=352.76 Aligned_cols=222 Identities=24% Similarity=0.412 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +.+++|+|+||+|++||+++|+||||||||||+++|+|...+ | +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~ 75 (251)
T PRK14251 4 IISAKDVHLSY--------GNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYG 75 (251)
T ss_pred eEEEEeeEEEE--------CCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEccc
Confidence 58999999998 245799999999999999999999999999999999996532 2 358999999998631
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+++ .||+||+.++..... ....+...+++.++++.+++....... -+..+.+||||
T Consensus 76 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LS~G 151 (251)
T PRK14251 76 SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDN-LDRNAQAFSGG 151 (251)
T ss_pred ccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHH-hccChhhCCHH
Confidence 34677999999999886 799999988653221 112233345677888888884221100 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 152 q~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i~~~~~ 229 (251)
T PRK14251 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMNGDLIEAGP 229 (251)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999864 789999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 230 ~~~~~ 234 (251)
T PRK14251 230 TEEMF 234 (251)
T ss_pred HHHHH
Confidence 98864
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=352.96 Aligned_cols=222 Identities=24% Similarity=0.386 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~- 224 (640)
.|+++|+++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~ 74 (249)
T PRK14253 3 KFNIENLDLFY--------GENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYG 74 (249)
T ss_pred eEEEeccEEEE--------CCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccc
Confidence 58999999998 3457999999999999999999999999999999999965321 35899999998873
Q ss_pred ----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 225 ----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 225 ----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
...++.++|++|++.+++ .||.||+.++.... ....+....+++.+.++.+++.+...... +..+.+|||||
T Consensus 75 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~G~ 150 (249)
T PRK14253 75 NIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFGLSGGQ 150 (249)
T ss_pred ccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCcccCCHHH
Confidence 134678999999999997 79999999865321 11123334556778888888754221111 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++++.|++
T Consensus 151 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~~~g~~ 228 (249)
T PRK14253 151 QQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELVEHDDT 228 (249)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999976 689999999975 57788999999999999999998
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
+++.
T Consensus 229 ~~~~ 232 (249)
T PRK14253 229 QVIF 232 (249)
T ss_pred HHHH
Confidence 8763
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=407.40 Aligned_cols=332 Identities=23% Similarity=0.273 Sum_probs=222.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.+++.++..+...|.....+++|+++.+..+.+++.+...+......+.................-..+.-+..|+
T Consensus 171 ~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (529)
T TIGR02857 171 AARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLSVALVAVYIG 250 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666778888899999999999999999999888876554433322110000000000000001111111122344
Q ss_pred hHhhhhhhhhhhhhccccCC----CCccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 90 ALSRASSASLGLSFSFTGFT----MPPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 90 ~~~~~~~~~~g~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
..+..|..+.|.++.+..+. .|... .+..+.....+.++ ...+.....+.....|+++
T Consensus 251 ~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~------~~~~~~~~~~~~~~~i~~~ 324 (529)
T TIGR02857 251 FRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPR------PLAGKAPVTAAPAPSLEFS 324 (529)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------ccCCCcCCCCCCCCeEEEE
Confidence 44445555666555554321 11111 11111111111000 0000000001111369999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~ 229 (640)
||+|+|+ ..++++|+|+|++|+|||.+||+||||||||||+|+|+|. ++ +.+|+|.+||.++. +.+|+
T Consensus 325 ~v~f~y~------~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-~~-~~~G~I~~~g~~i~~~~~~~lr~ 396 (529)
T TIGR02857 325 GLSVAYP------GRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-VD-PTEGSIAVNGVPLADADADSWRD 396 (529)
T ss_pred EEEEECC------CCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-CC-CCCcEEEECCEehhhCCHHHHHh
Confidence 9999983 1235799999999999999999999999999999999985 43 45899999999875 35788
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcCCHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGqrq 302 (640)
+++||+|++.+|+. |++|||.++.. ..+++ ++.+.++..+ ++++.||.+|+. ...|||||||
T Consensus 397 ~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gldt~v~e~-g~~LSgGq~q 465 (529)
T TIGR02857 397 QIAWVPQHPFLFAG-TIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLDTLIGEG-GAGLSGGQAQ 465 (529)
T ss_pred heEEEcCCCcccCc-CHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhccc-cccCCHHHHH
Confidence 99999999999975 99999998631 12222 2333333332 466789998764 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
|++|||||+++|++++||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.||+|++|
T Consensus 466 ri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d~i~~l 529 (529)
T TIGR02857 466 RLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL--AERADRIVVL 529 (529)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH--HHhCCEEEeC
Confidence 9999999999999999999999999999999999999875 58999999999753 5789999985
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=345.14 Aligned_cols=209 Identities=26% Similarity=0.475 Sum_probs=178.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
++++||++.|. .+++|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. ..
T Consensus 1 ~~~~~l~~~~~----------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 68 (213)
T TIGR01277 1 LALDKVRYEYE----------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPY 68 (213)
T ss_pred CeEEeeeEEeC----------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChh
Confidence 47899999881 24689999999999999999999999999999999653 568999999998743 35
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++||+|++.+|+.+|+.||+.+...... . .....+++++++++.+||.+..++ .++.||||||||++||
T Consensus 69 ~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 140 (213)
T TIGR01277 69 QRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDR-----LPEQLSGGQRQRVALA 140 (213)
T ss_pred ccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhC-----CcccCCHHHHHHHHHH
Confidence 6789999999999998999999987643211 1 122234567889999999776655 3578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|+|+.+|++++|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.||++++|++|++++.|.
T Consensus 141 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 141 RCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999764 899999999965 4667899999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=352.95 Aligned_cols=222 Identities=27% Similarity=0.417 Sum_probs=183.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... | +.+|+|.++|+++..
T Consensus 6 ~i~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 77 (253)
T PRK14261 6 ILSTKNLNLWY--------GEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMD 77 (253)
T ss_pred eEEEeeeEEEE--------CCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccc
Confidence 69999999998 345799999999999999999999999999999999996432 2 147999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+|+. ||+||+.+....+. .......++.+.++++.+++.+...+.. +..+..||||
T Consensus 78 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 153 (253)
T PRK14261 78 SGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSALSLSGG 153 (253)
T ss_pred cccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChhhCCHH
Confidence 345679999999999985 99999998754321 1122334556778888888753221111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.+.||++++|++|+++..|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14261 154 QQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKLIEFDK 231 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEEEEcCC
Confidence 99999999999999999999999999999999999999999976 689999999965 4667899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 232 ~~~~~ 236 (253)
T PRK14261 232 TTQIF 236 (253)
T ss_pred HHHHH
Confidence 98764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=343.42 Aligned_cols=195 Identities=37% Similarity=0.672 Sum_probs=166.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~-- 225 (640)
.+.|+||+|.|+.+ ++++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|.++..
T Consensus 3 ~~~~~~~~~~~~~~----~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~ 78 (202)
T cd03233 3 TLSWRNISFTTGKG----RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA 78 (202)
T ss_pred eEEEEccEEEeccC----CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch
Confidence 57999999999542 24678999999999999999999999999999999999965311 568999999998753
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++.... .+ ..+..||||||||+
T Consensus 79 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~-----~~~~~LS~Ge~qrl 127 (202)
T cd03233 79 EKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GN-----EFVRGISGGERKRV 127 (202)
T ss_pred hhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cc-----cchhhCCHHHHHHH
Confidence 35678999999999999999999998753210 12 23468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|++|++++.|
T Consensus 128 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 128 SIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999765 6777777766445677899999999999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=340.73 Aligned_cols=189 Identities=48% Similarity=0.839 Sum_probs=165.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++|+++.|... ..++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.++|+++....+
T Consensus 3 ~l~~~~l~~~~~~~----~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVK----GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQ 78 (192)
T ss_pred EEEEeeeEEEecCC----CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhh
Confidence 58999999998311 11357999999999999999999999999999999999964323568999999998765567
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
+.++|++|++.+++.+||+||+.++... + .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHHHHHHH
Confidence 7899999999999999999999875210 0 59999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEEEec
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLLYFG 378 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv~~G 378 (640)
||+.+|++|||||||+|||+.++..+.+.|+++++.|+|||++||++..++.+.||++++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999999877999999999976446688999999999 9999876
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-42 Score=351.93 Aligned_cols=221 Identities=22% Similarity=0.390 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cccEEEECCEeCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (640)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... |. .+|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~~~G~v~~~g~~~~ 74 (251)
T PRK14249 4 KIKIRGVNFFY--------HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGARLEGAVLLDNENIY 74 (251)
T ss_pred eEEEEEEEEEE--------CCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCCcccEEEECCEEcc
Confidence 58999999998 24569999999999999999999999999999999999653 32 2699999999864
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.++||+|++.+++. |++||+.+....+.. ...+...+.+++.++.++|.+..... .+..+..|||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~ 150 (251)
T PRK14249 75 SPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDN-LHKSGLALSG 150 (251)
T ss_pred ccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhH-hhCCcccCCH
Confidence 2 346789999999999975 999999987543211 11223345567778888875322111 2345678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. +++|||++||++. .+.+.||++++|++|++++.|
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999985 5899999999975 467889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 229 ~~~~~~ 234 (251)
T PRK14249 229 RTGEIF 234 (251)
T ss_pred CHHHHH
Confidence 988864
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=358.84 Aligned_cols=220 Identities=24% Similarity=0.379 Sum_probs=183.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-------cccEEEECCEe
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-------VGGSITYNDHP 222 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~-------~~G~I~~~G~~ 222 (640)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |. .+|+|.++|.+
T Consensus 2 l~~~nl~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~~~~~G~i~~~g~~ 72 (272)
T PRK13547 2 LTADHLHVAR--------RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRGARVTGDVTLNGEP 72 (272)
T ss_pred eEEEEEEEEE--------CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CcccccccCCceEEEECCEE
Confidence 7899999998 34579999999999999999999999999999999999653 22 17999999998
Q ss_pred CCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 223 YSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 223 ~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
+.. ..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+||.+..++ .+..||
T Consensus 73 ~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS 147 (272)
T PRK13547 73 LAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGR-----DVTTLS 147 (272)
T ss_pred cccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcC-----CcccCC
Confidence 742 3456789999998765568999999885321100 011112344567889999999765554 357899
Q ss_pred HHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEE
Q 006571 298 GGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 298 GGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
|||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.++||+++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~ 226 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIA 226 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 99999999999999 599999999999999999999999999999875 899999999975 4677899999
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|+++++.
T Consensus 227 ~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 227 MLADGAIVAHGAPADVL 243 (272)
T ss_pred EEECCeEEEecCHHHHc
Confidence 99999999999988763
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=442.85 Aligned_cols=217 Identities=23% Similarity=0.359 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|. .+.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+.
T Consensus 1236 g~I~f~nVsf~Y~------~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~r-l~~p-~~G~I~IDG~dI~~i~ 1307 (1622)
T PLN03130 1236 GSIKFEDVVLRYR------PELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFR-IVEL-ERGRILIDGCDISKFG 1307 (1622)
T ss_pred CcEEEEEEEEEeC------CCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhC-cCCC-CCceEEECCEecccCC
Confidence 4699999999993 123579999999999999999999999999999999996 5554 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
+.+|++|++||||+.+|+. |++|||.++. ..++++..+ .+++.++ .++++.||.+|+. ...|||
T Consensus 1308 l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdeei~~Al~~a~l~~~I~--~lp~GLdt~Vge~-G~nLSg 1377 (1622)
T PLN03130 1308 LMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDADLWESLERAHLKDVIR--RNSLGLDAEVSEA-GENFSV 1377 (1622)
T ss_pred HHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHHHHHHHHHcCcHHHHH--hCccccCccccCC-CCCCCH
Confidence 3679999999999999976 9999998642 122322211 2233343 3467889999864 457999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|||+|+|++++ ...||||++|++|+|++.|
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~G~IvE~G 1454 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDAGRVVEFD 1454 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999875 4669999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+|+++++
T Consensus 1455 t~~eLl~ 1461 (1622)
T PLN03130 1455 TPENLLS 1461 (1622)
T ss_pred CHHHHHh
Confidence 9999974
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=352.65 Aligned_cols=218 Identities=26% Similarity=0.402 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-----C
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|++ +
T Consensus 6 ~l~~~~l~~~~--------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i 75 (258)
T PRK11701 6 LLSVRGLTKLY--------GPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDL 75 (258)
T ss_pred eEEEeeeEEEc--------CCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCcccccccc
Confidence 69999999998 24579999999999999999999999999999999999653 568999999987 5
Q ss_pred Ch----h----ccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006571 224 SK----S----LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (640)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (640)
.. . .++.++||+|++ .+++.+|+.||+.+...... .....+...++.++++.+++.+ ..++ .
T Consensus 76 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (258)
T PRK11701 76 YALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDD-----L 148 (258)
T ss_pred ccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhC-----C
Confidence 32 1 245799999997 36777899999986532211 1122334566889999999963 4443 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.||+|++|++
T Consensus 149 ~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~ 227 (258)
T PRK11701 149 PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ 227 (258)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998765 899999999965 46678999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 228 g~i~~~~~~~~~~ 240 (258)
T PRK11701 228 GRVVESGLTDQVL 240 (258)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998864
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=353.26 Aligned_cols=214 Identities=31% Similarity=0.544 Sum_probs=172.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++||+++|. ...+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~ 72 (237)
T cd03252 1 ITFEHVRFRYK------PDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPA 72 (237)
T ss_pred CEEEEEEEecC------CCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHH
Confidence 47899999882 123579999999999999999999999999999999999653 568999999998642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHc--CCCccccccccCccCCcCCH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (640)
.+++.++|++|++.+++ .||.||+.+.... ....... ..+.++++.+ ++....+ ..+.+|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~-----~~~~~LSg 141 (237)
T cd03252 73 WLRRQVGVVLQENVLFN-RSIRDNIALADPG-----MSMERVIEAAKLAGAHDFISELPEGYDTIVG-----EQGAGLSG 141 (237)
T ss_pred HHhhcEEEEcCCchhcc-chHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhCcccccchhh-----cCCCcCCH
Confidence 34678999999998885 6999999874311 1111111 1223444444 3332222 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++.. + ..||++++|++|++++.|
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIVEQG 218 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999974 8999999999764 4 569999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++..
T Consensus 219 ~~~~~~~ 225 (237)
T cd03252 219 SHDELLA 225 (237)
T ss_pred CHHHHHh
Confidence 9888753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=387.46 Aligned_cols=219 Identities=23% Similarity=0.399 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 4 ~i~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~ 73 (501)
T PRK10762 4 LLQLKGIDKAF--------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGP 73 (501)
T ss_pred eEEEeeeEEEe--------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 59999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
. .++.++||+|++.+++.+||+||+.++...... ......+.++++.++++.+||.+..+.. +..|||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 148 (501)
T PRK10762 74 KSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKL-----VGELSIGEQQ 148 (501)
T ss_pred HHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHH
Confidence 1 246799999999999999999999986432110 1122334456788999999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|+++..|++++
T Consensus 149 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 149 MVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred HHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999999999999999999999999999999877999999999975 5778999999999999999998765
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 228 ~ 228 (501)
T PRK10762 228 L 228 (501)
T ss_pred C
Confidence 4
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=354.41 Aligned_cols=222 Identities=23% Similarity=0.411 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|+||||||||+++|+|.+.. + +.+|+|.++|+++..
T Consensus 24 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~ 95 (271)
T PRK14238 24 VFDTQNLNLWY--------GEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95 (271)
T ss_pred EEEEeeeEEEE--------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccc
Confidence 69999999998 245699999999999999999999999999999999996531 2 468999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+|+ .||+||+.++..... .......++.+.+.++.+++.+...... +..+..||||
T Consensus 96 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~LSgG 171 (271)
T PRK14238 96 KSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRL-HDNAYGLSGG 171 (271)
T ss_pred ccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHH-hcCcccCCHH
Confidence 34678999999999987 499999998754321 1122233445677777775432111111 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 799999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 250 ~~~~~ 254 (271)
T PRK14238 250 TDKIF 254 (271)
T ss_pred HHHHH
Confidence 88763
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=354.75 Aligned_cols=221 Identities=24% Similarity=0.391 Sum_probs=186.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC----CcccEEEECCEeCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP----TVGGSITYNDHPYS 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~----~~~G~I~~~G~~~~ 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... | +.+|+|.++|.++.
T Consensus 21 ~l~i~nl~~~~--------~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-p~~~~~~~G~i~~~g~~i~ 91 (276)
T PRK14271 21 AMAAVNLTLGF--------AGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-KVSGYRYSGDVLLGGRSIF 91 (276)
T ss_pred EEEEeeEEEEE--------CCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-cCCCCCCceEEEECCEEcc
Confidence 68999999998 34679999999999999999999999999999999999653 3 36899999999874
Q ss_pred h-----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 K-----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 ~-----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
. .+++.++|++|++.+|+ .||+||+.++.... ...+..+....+.++++.++|.+..++.. +..+..||||
T Consensus 92 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~~LSgG 167 (276)
T PRK14271 92 NYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPFRLSGG 167 (276)
T ss_pred ccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcccCCHH
Confidence 2 34678999999999998 79999999864321 11234444456778889999865332222 2345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.++||++++|++|++++.|+
T Consensus 168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i~~~g~ 245 (276)
T PRK14271 168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRLVEEGP 245 (276)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 5778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 246 ~~~~~ 250 (276)
T PRK14271 246 TEQLF 250 (276)
T ss_pred HHHHH
Confidence 98874
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=439.70 Aligned_cols=215 Identities=22% Similarity=0.349 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|. .+.+++|+|+||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+.
T Consensus 1233 g~I~f~nVsf~Y~------~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~r-l~~p-~~G~I~IdG~di~~i~ 1304 (1495)
T PLN03232 1233 GSIKFEDVHLRYR------PGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFR-IVEL-EKGRIMIDDCDVAKFG 1304 (1495)
T ss_pred CcEEEEEEEEEEC------CCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhC-CCcC-CCceEEECCEEhhhCC
Confidence 3699999999992 123579999999999999999999999999999999996 5544 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcC
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (640)
+.+|++|+|||||+.+|+. |++|||.++. ..++++ +.++++.. .++++.||.+|.. ...|
T Consensus 1305 ~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1372 (1495)
T PLN03232 1305 LTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDAD----LWEALERAHIKDVIDRNPFGLDAEVSEG-GENF 1372 (1495)
T ss_pred HHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHHH----HHHHHHHcCCHHHHHhCcCCCCceecCC-CCCC
Confidence 3679999999999999986 9999998642 123332 33333333 3466789998764 4569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+++|+||+||||||+||++++..|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|++
T Consensus 1373 SgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVL~~G~ivE 1449 (1495)
T PLN03232 1373 SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT--IIDCDKILVLSSGQVLE 1449 (1495)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 48999999999864 46699999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+|+++
T Consensus 1450 ~Gt~~eLl~ 1458 (1495)
T PLN03232 1450 YDSPQELLS 1458 (1495)
T ss_pred ECCHHHHHh
Confidence 999999874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=387.80 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 74 (510)
T PRK09700 5 YISMAGIGKSF--------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDH 74 (510)
T ss_pred eEEEeeeEEEc--------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhcc--C-C-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLR--L-P-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~--~-~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++||+|++.+++.+||+||+.++.... . . ......+..+++.++++.+||.+..++. +.+||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG 149 (510)
T PRK09700 75 KLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEK-----VANLSIS 149 (510)
T ss_pred HHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccc-----hhhCCHH
Confidence 12457999999999999999999998754210 0 0 0012334456788999999998766654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|++++.|+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~~g~ 228 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVCSGM 228 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999999999999888999999999965 4678899999999999999999
Q ss_pred hHHH
Q 006571 380 ASEA 383 (640)
Q Consensus 380 ~~~~ 383 (640)
++++
T Consensus 229 ~~~~ 232 (510)
T PRK09700 229 VSDV 232 (510)
T ss_pred hhhC
Confidence 8764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=348.85 Aligned_cols=222 Identities=25% Similarity=0.395 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CC--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PT--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~--~~G~I~~~G~~~~~ 225 (640)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... |. .+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~ 76 (252)
T PRK14255 5 IITSSDVHLFY--------GKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYA 76 (252)
T ss_pred eEEEEeEEEEE--------CCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccc
Confidence 68999999998 245799999999999999999999999999999999996431 21 48999999998731
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++|++|++.+++ .||+||+.+....+.. ...+..++++.+.++.+++....... -+..+..||||
T Consensus 77 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~-~~~~~~~LS~G 152 (252)
T PRK14255 77 PNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDH-LHESALSLSGG 152 (252)
T ss_pred ccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhH-HhcCcccCCHH
Confidence 34678999999999998 6999999987543211 11222334566778887764221111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||+|++|++|+++..|+
T Consensus 153 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14255 153 QQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLTGNLIEFAD 230 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999976 589999999975 4678899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
+.++.
T Consensus 231 ~~~~~ 235 (252)
T PRK14255 231 TKQMF 235 (252)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=351.98 Aligned_cols=222 Identities=22% Similarity=0.423 Sum_probs=183.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-C--cccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-T--VGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~--~~G~I~~~G~~~~~ 225 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+|+||||||||+|+|+|.+... + .+|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 78 (259)
T PRK14260 7 AIKVKDLSFYY--------NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78 (259)
T ss_pred eEEEEEEEEEE--------CCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccc
Confidence 69999999998 2456999999999999999999999999999999999965421 2 48999999998732
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
.+++.++||+|++.+|+ +||+||+.++...+. ...+.+..+++.++++.+++.+..... .+..+..||||
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LS~G 154 (259)
T PRK14260 79 PRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDK-LNKSALGLSGG 154 (259)
T ss_pred cccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCHH
Confidence 34568999999999997 899999988754321 122334455677888888884321111 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc-----CCeE
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-----KGSL 374 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~-----~G~i 374 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|+ +|++
T Consensus 155 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 155 QQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999875 689999999976 5778999999998 5999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
++.|+++++.
T Consensus 233 ~~~~~~~~~~ 242 (259)
T PRK14260 233 VEFGVTTQIF 242 (259)
T ss_pred EEeCCHHHHh
Confidence 9999999874
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=335.24 Aligned_cols=216 Identities=29% Similarity=0.541 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+.+|++|+. ..+.+|++||++++|||++||+||||||||||||.|+|.+. +.+|++.+||.++..
T Consensus 1 mi~a~nls~~~--------~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~ 70 (259)
T COG4559 1 MIRAENLSYSL--------AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPP 70 (259)
T ss_pred CeeeeeeEEEe--------ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCH
Confidence 47899999986 56789999999999999999999999999999999999764 468999999999853
Q ss_pred -hccCcEEEEccCCCC-CCCCCHHHHHHHHHhccCCCCc--cHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 -SLKSKIGFVTQDDVL-FPHLTVKETLTYAALLRLPNTL--TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l-~~~lTV~Enl~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
++.++-+.+||+..+ || .||.|-+.++.. |... ...+..+.+++.+...++.+..... ...||||||
T Consensus 71 ~~lA~~raVlpQ~s~laFp-Ftv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGEq 141 (259)
T COG4559 71 EELARHRAVLPQNSSLAFP-FTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGEQ 141 (259)
T ss_pred HHHHHHhhhcccCcccccc-eEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchHH
Confidence 455678999999877 65 699999999863 3322 2234555678888888887766543 468999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 302 KRVCIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 302 qRv~IA~aL~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||.+||.|+. ++++||||||||+||...+..++++.++++++|..|+++.||++- ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999976 456999999999999999999999999999999999999999875 66899999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
..|+|++++
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=356.86 Aligned_cols=223 Identities=22% Similarity=0.366 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC-CC--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM-EP--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~-~~--~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... .| +.+|+|.++|+++.
T Consensus 38 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~ 109 (286)
T PRK14275 38 PHVVAKNFSIYY--------GEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIY 109 (286)
T ss_pred eEEEEeeeEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhh
Confidence 369999999998 23469999999999999999999999999999999999642 13 36899999998863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.++||+|++.+++. ||.||+.++...+. ..+....++++.++++.+++.+..... -+..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 185 (286)
T PRK14275 110 GKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDR-LDKNALGLSG 185 (286)
T ss_pred hcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhH-hhCChhhCCH
Confidence 2 246789999999999975 99999998754321 112233445677888888874211001 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|++|++++.|
T Consensus 186 Gq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999875 689999999975 467889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 264 ~~~~~~ 269 (286)
T PRK14275 264 PTAQLF 269 (286)
T ss_pred CHHHHH
Confidence 998874
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=351.50 Aligned_cols=222 Identities=22% Similarity=0.404 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC----cccEEEECCEeCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT----VGGSITYNDHPYS 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~----~~G~I~~~G~~~~ 224 (640)
.|+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +. .+|+|.++|+++.
T Consensus 7 ~l~~~nl~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~g~i~~~G~i~~~g~~i~ 77 (261)
T PRK14258 7 AIKVNNLSFYY--------DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIY 77 (261)
T ss_pred eEEEeeEEEEe--------CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC-CCCCccccceEEECCEEhh
Confidence 69999999998 23469999999999999999999999999999999999654 32 3799999998863
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..+++.++|++|++.+++ +|++||+.+...... ..+..+..+++.++++.+++.+..+.. .+..+..|||
T Consensus 78 ~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSg 153 (261)
T PRK14258 78 ERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHK-IHKSALDLSG 153 (261)
T ss_pred ccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhH-hcCCcccCCH
Confidence 134677999999999998 899999998653221 112333456678899999885432211 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC-----C
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK-----G 372 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~-----G 372 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||+|++|++ |
T Consensus 154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999999875 4899999999975 57789999999999 9
Q ss_pred eEEEecChHHHH
Q 006571 373 SLLYFGKASEAM 384 (640)
Q Consensus 373 ~iv~~G~~~~~~ 384 (640)
++++.|+++++.
T Consensus 233 ~i~~~~~~~~~~ 244 (261)
T PRK14258 233 QLVEFGLTKKIF 244 (261)
T ss_pred eEEEeCCHHHHH
Confidence 999999999974
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=354.04 Aligned_cols=221 Identities=24% Similarity=0.419 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++|.++.
T Consensus 38 ~~l~i~~l~~~~--------~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~ 109 (285)
T PRK14254 38 TVIEARDLNVFY--------GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVY 109 (285)
T ss_pred ceEEEEEEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcc
Confidence 469999999998 245799999999999999999999999999999999996532 146899999999863
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. ..++.++||+|++.+|+. ||.||+.+....+. ... ...++++++++.++|.+...... +..+..|||
T Consensus 110 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LSg 183 (285)
T PRK14254 110 DADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQL-DSSGLDLSG 183 (285)
T ss_pred ccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHH-hCCcccCCH
Confidence 1 346789999999988885 99999998754321 122 33456888999998853211111 234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE-EEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~-vL~~G~iv~~ 377 (640)
||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++|||++ +|++|++++.
T Consensus 184 Ge~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~~G~i~~~ 261 (285)
T PRK14254 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLTGGELVEF 261 (285)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEeeCCEEEEe
Confidence 999999999999999999999999999999999999999999976 489999999975 4677899975 6799999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 262 g~~~~~~ 268 (285)
T PRK14254 262 DDTDKIF 268 (285)
T ss_pred CCHHHHH
Confidence 9988763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=342.66 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=173.2
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (640)
.+ ||+++| +++.+ |+||+|++ |+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 3 ~~-~l~~~~--------~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~ 68 (214)
T cd03297 3 CV-DIEKRL--------PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKI 68 (214)
T ss_pred ee-eeeEec--------CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchh
Confidence 44 888888 23444 99999999 9999999999999999999999653 468999999988641
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+|++||+.+..... .....++++.++++.+||.+..+. .+..|||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~q 138 (214)
T cd03297 69 NLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNR-----YPAQLSGGEKQ 138 (214)
T ss_pred hhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhc-----CcccCCHHHHH
Confidence 24567999999999999899999998865321 223345678899999999765554 35689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|
T Consensus 139 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 139 RVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999865 899999999975 466889999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=348.99 Aligned_cols=200 Identities=34% Similarity=0.490 Sum_probs=171.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEc-cCCCCCCC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPH 243 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~ 243 (640)
+.+++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++. ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999653 46899999998753 23467899998 55778888
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
+||+||+.+..... ....++..+++.++++.+||.+..++. +..||||||||++||++|+.+|++|||||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTP-----VRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 123344455678899999998777764 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 324 SGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
+|||+.++..+.+.|++++++ ++|||++||++. .+.++||++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 889999999975 567889999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=347.91 Aligned_cols=221 Identities=25% Similarity=0.344 Sum_probs=181.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 7 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 78 (252)
T CHL00131 7 ILEIKNLHASV--------NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78 (252)
T ss_pred eEEEEeEEEEe--------CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCCh
Confidence 69999999998 2456999999999999999999999999999999999963223568999999998743
Q ss_pred -hccC-cEEEEccCCCCCCCCCHHHHHHHHHhccCC----CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCC-cCC
Q 006571 226 -SLKS-KIGFVTQDDVLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVR-GVS 297 (640)
Q Consensus 226 -~~~~-~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~-~LS 297 (640)
..++ .++|++|++.+++.+|+.+|+.+....... ......+..+++.++++.++|.+ ..++. +. +||
T Consensus 79 ~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~~LS 153 (252)
T CHL00131 79 EERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRN-----VNEGFS 153 (252)
T ss_pred hhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccc-----cccCCC
Confidence 1222 488999999999999999999875432110 01122233456788899999963 44443 33 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~ 376 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. +... ||++++|++|++++
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G~i~~ 232 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNGKIIK 232 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999999999999998779999999999653 4455 89999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++.+
T Consensus 233 ~~~~~~~ 239 (252)
T CHL00131 233 TGDAELA 239 (252)
T ss_pred ecChhhh
Confidence 9999844
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=349.33 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=181.2
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~ 223 (640)
|..|+++||+++| ++++|+|+||+|++||+++|+||||||||||+++|+|... | +++|+|.++|+++
T Consensus 2 ~~~l~~~~l~~~~---------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~~~~G~i~~~g~~i 71 (254)
T PRK10418 2 PQQIELRNIALQA---------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVRQTAGRVLLDGKPV 71 (254)
T ss_pred CcEEEEeCeEEEe---------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCCCcCCEEEECCeec
Confidence 3469999999987 2369999999999999999999999999999999999654 3 1689999999987
Q ss_pred Ch-h-ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCccCCcC
Q 006571 224 SK-S-LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSFVRGV 296 (640)
Q Consensus 224 ~~-~-~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~~~~L 296 (640)
.. . .++.++||+|++. +.+.+|+.+|+.+.+.... ... .++++.++++.++|.+. .++ .+..|
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~~~L 141 (254)
T PRK10418 72 APCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKL-----YPFEM 141 (254)
T ss_pred cccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhc-----CCccc
Confidence 53 2 2357999999974 4566799999877543211 111 23567889999999752 333 45789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|+++
T Consensus 142 S~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G~i~ 220 (254)
T PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHGRIV 220 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999975 466789999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 221 ~~~~~~~~~ 229 (254)
T PRK10418 221 EQGDVETLF 229 (254)
T ss_pred EecCHHHHh
Confidence 999988874
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=330.38 Aligned_cols=218 Identities=29% Similarity=0.504 Sum_probs=193.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.|+++|+.++| +...+|++||++.+.|+++.|+|.|||||||+|+||. .+.. |..|.|.+||+.+.
T Consensus 6 ~l~v~dlHK~~--------G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN-~LE~-P~~G~I~v~geei~~k~~ 75 (256)
T COG4598 6 ALEVEDLHKRY--------GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCIN-FLEK-PSAGSIRVNGEEIRLKRD 75 (256)
T ss_pred ceehhHHHhhc--------ccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHH-hhcC-CCCceEEECCeEEEeeeC
Confidence 58899999988 5678999999999999999999999999999999998 4544 56899999998763
Q ss_pred -------------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 225 -------------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
+.+|.+.|+|||+.+|++++||.||+.-+...-+ ..++.+..++++.+|..+||.+..|.
T Consensus 76 ~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~----- 148 (256)
T COG4598 76 KDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA----- 148 (256)
T ss_pred CCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc-----
Confidence 1246789999999999999999999986532222 35678888899999999999887774
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++..|||||+||++|||||+.+|+++++|||||+|||+-.-++++.+++|+++|+|.+++||.... ..+...+|++|++
T Consensus 149 YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~ 227 (256)
T COG4598 149 YPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ 227 (256)
T ss_pred CccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec
Confidence 567899999999999999999999999999999999999999999999999999999999999654 5677899999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|.|-+.|+|+++.
T Consensus 228 G~iEE~G~P~qvf 240 (256)
T COG4598 228 GKIEEEGPPEQVF 240 (256)
T ss_pred ceecccCChHHHh
Confidence 9999999999984
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=351.88 Aligned_cols=221 Identities=22% Similarity=0.356 Sum_probs=181.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 19 ~~l~~~nl~~~~--------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~ 90 (274)
T PRK14265 19 SVFEVEGVKVFY--------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90 (274)
T ss_pred ceEEEeeEEEEe--------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence 479999999998 345799999999999999999999999999999999996532 1 25899999999873
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
. .+++.|+|++|++.+++. ||.||+.++...+. .. ...++.+.+.++.+++.+..... -+..+..|||
T Consensus 91 ~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 164 (274)
T PRK14265 91 DSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDK-LKEKGTALSG 164 (274)
T ss_pred cccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHH-hcCCcccCCH
Confidence 1 346789999999998875 99999998653221 11 12234456677777764221111 1234578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc--------
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-------- 370 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~-------- 370 (640)
||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||++++|+
T Consensus 165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~~~~~ 242 (274)
T PRK14265 165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEIDEYGK 242 (274)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccccccc
Confidence 999999999999999999999999999999999999999999975 789999999975 4778999999997
Q ss_pred -CCeEEEecChHHHH
Q 006571 371 -KGSLLYFGKASEAM 384 (640)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 243 ~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 243 RRGKLVEFSPTEQMF 257 (274)
T ss_pred cCceEEEeCCHHHHH
Confidence 89999999999874
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=339.73 Aligned_cols=198 Identities=28% Similarity=0.504 Sum_probs=169.6
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h---
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K--- 225 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~--- 225 (640)
++||++.| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++. .
T Consensus 1 i~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~ 70 (206)
T TIGR03608 1 LKNISKKF--------GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKA 70 (206)
T ss_pred CcceEEEE--------CCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhH
Confidence 36888887 34579999999999999999999999999999999999653 46899999999853 1
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|++||+.+..... .....+..+++.++++.+||.+..++. +.+||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qr 142 (206)
T TIGR03608 71 SKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQK-----IYELSGGEQQR 142 (206)
T ss_pred HHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCC-----hhhCCHHHHHH
Confidence 23568999999999999899999999865432 223444566788999999997766654 46899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||+++|++. ....||++++|
T Consensus 143 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 143 VALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999999999999999999999877899999999975 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=383.42 Aligned_cols=213 Identities=23% Similarity=0.421 Sum_probs=186.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~ 79 (510)
T PRK15439 10 PLLCARSISKQY--------SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLT 79 (510)
T ss_pred ceEEEEeEEEEe--------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCC
Confidence 369999999998 34579999999999999999999999999999999999653 568999999998742
Q ss_pred --h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
. .++.+|||+|++.+++.+||+||+.++... ..+.++++.++++.+||.+..+.. +..|||||||
T Consensus 80 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~q 147 (510)
T PRK15439 80 PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSS-----AGSLEVADRQ 147 (510)
T ss_pred HHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCC-----hhhCCHHHHH
Confidence 1 235699999999999999999999885321 123456688899999998766654 4689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|++++.|++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKTAD 226 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecChHH
Confidence 999999999999999999999999999999999999999888999999999965 4678899999999999999999876
Q ss_pred H
Q 006571 383 A 383 (640)
Q Consensus 383 ~ 383 (640)
+
T Consensus 227 ~ 227 (510)
T PRK15439 227 L 227 (510)
T ss_pred c
Confidence 5
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=352.50 Aligned_cols=226 Identities=25% Similarity=0.455 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccc-cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGM-TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~-~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.|+++||+++|..... ....++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~ 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLN 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccC
Confidence 5899999999831000 00013679999999999999999999999999999999999643 468999999998642
Q ss_pred -----hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 -----SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
.+++.++|++|++ .+++..|+.||+.+...... .....+...+++++++.+|+. +..++ .+..||
T Consensus 81 ~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~~LS 153 (268)
T PRK10419 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK-----RPPQLS 153 (268)
T ss_pred hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC-----CCccCC
Confidence 2467899999997 46677899999987542111 123444556789999999996 34444 456899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++|++|++++
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEEee
Confidence 99999999999999999999999999999999999999999999765 899999999975 4667899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 233 ~g~~~~~~ 240 (268)
T PRK10419 233 TQPVGDKL 240 (268)
T ss_pred eCChhhcc
Confidence 99998865
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=335.80 Aligned_cols=191 Identities=52% Similarity=0.894 Sum_probs=164.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (640)
.|+++||+++|.... ...++++|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.++|+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~--~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~ 80 (194)
T cd03213 3 TLSFRNLTVTVKSSP--SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSF 80 (194)
T ss_pred EEEEEeeEEEEecCC--CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhh
Confidence 589999999983210 001367999999999999999999999999999999999965112468999999998864 45
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+|++||+.+.... ..||||||||++||
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~~i~~~~~~-------------------------------------~~LS~G~~qrv~la 123 (194)
T cd03213 81 RKIIGYVPQDDILHPTLTVRETLMFAAKL-------------------------------------RGLSGGERKRVSIA 123 (194)
T ss_pred hheEEEccCcccCCCCCcHHHHHHHHHHh-------------------------------------ccCCHHHHHHHHHH
Confidence 67899999999999999999999864210 05999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||+.+|+++||||||+|||+.++..+.+.|+++.++|+|+|+++|++..++.+.||++++|++|++++.|
T Consensus 124 ral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 124 LELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998779999999999865577889999999999998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=341.97 Aligned_cols=210 Identities=30% Similarity=0.508 Sum_probs=179.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||++.|..+ .+.+.+|+|+||++++|++++|+||||||||||+++|+|.+ ++.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~----~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~ 75 (220)
T TIGR02982 2 ISIRNLNHYYGHG----SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR--SVQEGSLKVLGQELYGASEK 75 (220)
T ss_pred EEEEEEEEEccCC----CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEhHhcCHh
Confidence 7899999998311 11367999999999999999999999999999999999964 3568999999998742
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++|++|++.+++.+|+.||+.++..... ....++..+++.++++.+||.+..++. ++.|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~q 148 (220)
T TIGR02982 76 ELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQ 148 (220)
T ss_pred HHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHH
Confidence 245789999999999998999999998754321 133445566789999999997766653 4789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ .++|||+++|++. +.++||+|++|++|++
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 4899999999975 4579999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=346.49 Aligned_cols=222 Identities=22% Similarity=0.393 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~~ 225 (640)
.|+++||++.| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.+||.++..
T Consensus 3 ~l~~~~v~~~~--------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~ 74 (250)
T PRK14266 3 RIEVENLNTYF--------DDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74 (250)
T ss_pred EEEEEeEEEEe--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccc
Confidence 48899999998 345799999999999999999999999999999999996431 2 368999999998742
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.++|++|++.+|+. |+.||+.++.... .....+..++++.++++.++|.+...... +..+..||||
T Consensus 75 ~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LS~G 150 (250)
T PRK14266 75 PAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSALGLSGG 150 (250)
T ss_pred ccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCcccCCHH
Confidence 346789999999999985 9999999865322 11123344567888899988854322111 3346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++...||++++|++|++++.|+
T Consensus 151 q~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~i~~~g~ 228 (250)
T PRK14266 151 QQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGEIIESGL 228 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999999965 889999999975 5778899999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 229 ~~~~~ 233 (250)
T PRK14266 229 TDQIF 233 (250)
T ss_pred HHHHH
Confidence 98874
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=348.98 Aligned_cols=222 Identities=20% Similarity=0.322 Sum_probs=185.3
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~ 223 (640)
++.+.+++++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.+. +.+|+|+++|+++
T Consensus 6 ~~~~~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i 77 (261)
T PRK14263 6 PIVMDCKLDKIFY--------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77 (261)
T ss_pred CceEEEEeEEEEe--------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEec
Confidence 4568999999987 3567999999999999999999999999999999999965420 2589999999987
Q ss_pred Ch------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 224 SK------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 224 ~~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.. .+++.++|++|++.++ .+|+.||+.++...+. . ..+..+++.++++.++|.+..+... +..++.||
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS 151 (261)
T PRK14263 78 YGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKL-KVSGLSLS 151 (261)
T ss_pred cccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhh-hCCcccCC
Confidence 32 3467799999999988 4899999998764321 1 2233457888999999864332222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc-------
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------- 370 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------- 370 (640)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.++||+|++|+
T Consensus 152 ~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~ 229 (261)
T PRK14263 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVDISQGT 229 (261)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEeccccccc
Confidence 9999999999999999999999999999999999999999999964 789999999975 4778999999995
Q ss_pred -CCeEEEecChHHHH
Q 006571 371 -KGSLLYFGKASEAM 384 (640)
Q Consensus 371 -~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 230 ~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 230 RTGYLVEMGPTAQIF 244 (261)
T ss_pred CCceEEEeCCHHHHH
Confidence 89999999998875
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-42 Score=348.15 Aligned_cols=214 Identities=32% Similarity=0.516 Sum_probs=174.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. ..++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (234)
T cd03251 1 VEFKNVTFRYP------GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLA 72 (234)
T ss_pred CEEEEEEEEeC------CCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHH
Confidence 47899999982 112379999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHc--CCCccccccccCccCCcCCH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINEL--GLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSG 298 (640)
..++.++|++|++.+++ .||+||+.+.... ....... ..+.++++.+ ++.+..+ ..+..|||
T Consensus 73 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~LS~ 141 (234)
T cd03251 73 SLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIG-----ERGVKLSG 141 (234)
T ss_pred HHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeec-----cCCCcCCH
Confidence 34677999999999887 6999999875321 1111111 1234555555 4443333 34578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +. .||++++|++|++++.|
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IE-NADRIVVLEDGKIVERG 218 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hh-hCCEEEEecCCeEeeeC
Confidence 999999999999999999999999999999999999999999864 8999999999764 54 49999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++..
T Consensus 219 ~~~~~~~ 225 (234)
T cd03251 219 THEELLA 225 (234)
T ss_pred CHHHHHH
Confidence 9888754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-42 Score=374.29 Aligned_cols=228 Identities=26% Similarity=0.422 Sum_probs=194.9
Q ss_pred eeEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
+.++++||++.|..++. ...+...+++||||++++||++||||+||||||||.|+|+|... +.+|+|.++|.+..
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccc
Confidence 46899999999965321 11234679999999999999999999999999999999999653 47999999998731
Q ss_pred ------hhccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 225 ------KSLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
...|+++-+||||| .|.|.+||+++|......... ....++++++.++++.+||+.. ..++++++|
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~----~l~ryP~el 430 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPE----FLDRYPHEL 430 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHH----HHhcCchhc
Confidence 23567888899886 689999999999987665432 2356677889999999999842 345678999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||++|||||+.+|++|++|||||+||+..+..|+++|+++.++ |.|.|+||||+. .+..+||||++|++|+||
T Consensus 431 SGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 431 SGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRIV 509 (539)
T ss_pred CcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999865 999999999976 578899999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+.+++.
T Consensus 510 E~G~~~~v~ 518 (539)
T COG1123 510 EEGPTEKVF 518 (539)
T ss_pred EeCCHHHHh
Confidence 999888875
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=372.34 Aligned_cols=346 Identities=27% Similarity=0.356 Sum_probs=239.5
Q ss_pred HHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCC-----------CcCCCCCcccee--eec----ccccccee
Q 006571 19 VETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASP-----------GRAGASGRNTHI--RKS----RSAQLKLE 81 (640)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~--~~~----~~~~~~~~ 81 (640)
.++.+.|..|+-+-|||+-|+.+.-+..+|..-+++.-.. ...|+.-.++.- ... .-.+..++
T Consensus 119 s~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~T 198 (497)
T COG5265 119 SDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLT 198 (497)
T ss_pred hHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCC
Confidence 4556677888888899999999888888887655422111 111111111110 000 00111222
Q ss_pred cchhc-hhhhHhhhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 82 LDEVS-SGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 82 ~~~~~-~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
+.++- .-..+...+.-..+..+++ .++-+.-...+.++...+.+.++...+...+- .|..+..+.|+||+|.|.
T Consensus 199 vgD~V~~Nall~qls~Plnflg~~Y--rei~q~ltdme~mfdLl~~~~~v~d~pda~~L---~~~~~g~v~F~~V~F~y~ 273 (497)
T COG5265 199 VGDLVNVNALLFQLSIPLNFLGFSY--REIRQALTDMEKMFDLLDVEAEVSDAPDAPPL---WPVRLGAVAFINVSFAYD 273 (497)
T ss_pred chhHHhHHHHHhhhhhhhhhhHHHH--HHHHHhhhhHHHHHHhhccchhhccCCCCccc---cccccceEEEEEEEeecc
Confidence 22211 1111111111111222222 12222222333334444444333332221111 112345699999999983
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q 236 (640)
+.+++|+++||++++|+.+||+||||+||||++++|- |++++ .+|.|.+||++++ +.+|+-||.|||
T Consensus 274 -------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllf-RFyD~-~sG~I~id~qdir~vtq~slR~aIg~VPQ 344 (497)
T COG5265 274 -------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF-RFYDV-NSGSITIDGQDIRDVTQQSLRRAIGIVPQ 344 (497)
T ss_pred -------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHH-HHhCC-cCceEEEcchhHHHhHHHHHHHHhCcCcc
Confidence 5789999999999999999999999999999999999 77875 4899999999986 367899999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
|..||.+ |+..|+.|+..-.....+....+.+.+.++++. +++++++.||.++.+ |||||||||+|||+++.+|+|
T Consensus 345 DtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~~--lP~gy~t~Vgerglk-lSggekqrvaiar~ilk~p~i 420 (497)
T COG5265 345 DTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS--LPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPI 420 (497)
T ss_pred cceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHHh--Cchhhhcccchheee-ccCchHHHHHHHHHHhcCCCE
Confidence 9999965 999999997432111111122233445566665 599999999987665 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+|||.||+||..++++|...|+++. .|+|.+++.|++++ + --+|.|+||++|+|++.|+|+++++
T Consensus 421 l~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i-~~adeiivl~~g~i~erg~h~~ll~ 486 (497)
T COG5265 421 LILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-I-IDADEIIVLDNGRIVERGTHEELLA 486 (497)
T ss_pred EEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-c-cCCceEEEeeCCEEEecCcHHHHHH
Confidence 99999999999999999999999987 49999999999986 3 4699999999999999999999986
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=350.75 Aligned_cols=220 Identities=21% Similarity=0.378 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~- 224 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|+++.
T Consensus 10 ~l~i~~v~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~ 81 (264)
T PRK14243 10 VLRTENLNVYY--------GSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81 (264)
T ss_pred EEEEeeeEEEE--------CCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccc
Confidence 69999999998 245799999999999999999999999999999999996431 1 35899999998863
Q ss_pred -----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 225 -----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 225 -----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..+++.++||+|++.+++ .||.||+.++...+ ... ....+++.++++.+++.+..+.. -+..+..||||
T Consensus 82 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSgG 155 (264)
T PRK14243 82 PDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDK-LKQSGLSLSGG 155 (264)
T ss_pred cccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHH-hcCCcccCCHH
Confidence 234678999999999887 49999999875432 111 22344566777777774321111 12345789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc---------
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG--------- 370 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~--------- 370 (640)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.++||+|++|+
T Consensus 156 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~ 233 (264)
T PRK14243 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGR 233 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEeccccccccc
Confidence 99999999999999999999999999999999999999999976 589999999965 5789999999998
Q ss_pred CCeEEEecChHHHH
Q 006571 371 KGSLLYFGKASEAM 384 (640)
Q Consensus 371 ~G~iv~~G~~~~~~ 384 (640)
+|++++.|+++++.
T Consensus 234 ~g~i~~~~~~~~~~ 247 (264)
T PRK14243 234 YGYLVEFDRTEKIF 247 (264)
T ss_pred CceEEEeCCHHHHH
Confidence 79999999998874
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-43 Score=434.72 Aligned_cols=215 Identities=23% Similarity=0.341 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+|+||+|+|+. +.+++|+||||+|+|||.+||+|+||||||||+++|.| +++| .+|+|.+||.|+++
T Consensus 1283 g~I~f~nVsf~Y~~------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~r-l~~~-~~G~I~IdG~dI~~i~ 1354 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRE------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-INES-AEGEIIIDGLNIAKIG 1354 (1522)
T ss_pred CcEEEEEEEEEeCC------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhc-CccC-CCCeEEECCEEccccC
Confidence 46999999999931 23479999999999999999999999999999999996 5554 58999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (640)
.+|++|+|||||+.+|++ |++|||.... ..++++ +.++++..+ ++++.||.+|.. ...|
T Consensus 1355 ~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLdt~v~e~-G~~L 1422 (1522)
T TIGR00957 1355 LHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLDHECAEG-GENL 1422 (1522)
T ss_pred HHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCCceecCC-CCcC
Confidence 679999999999999986 9999997321 123333 333333333 456789999764 4569
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+++|+||+||||||+||+++...|.+.|++.. +++|||+|+|+++. ...||||++|++|+|++
T Consensus 1423 SgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t--i~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT--IMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 48999999999865 46799999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+++++
T Consensus 1500 ~G~~~eLl~ 1508 (1522)
T TIGR00957 1500 FGAPSNLLQ 1508 (1522)
T ss_pred ECCHHHHHh
Confidence 999999975
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=346.19 Aligned_cols=201 Identities=31% Similarity=0.468 Sum_probs=171.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++... ....+|++|++.+++.+||.||+.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHH
Confidence 589999999999999999999999999999999653 5689999999987532 2235899999999999999999998
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
+.....+ .....+..+++.++++.+||.+..++. +..||||||||++|||+|+.+|++|||||||+|||+.++.
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 78 AVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 6421111 233444556788999999998766654 4689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 333 RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 333 ~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++++.|+..++
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999764 899999999975 47788999999999999998866543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=372.82 Aligned_cols=228 Identities=27% Similarity=0.443 Sum_probs=197.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~~- 225 (640)
.|+++|++..|... .+...+++||||+|.+||++||+|.|||||||+.++|.|.+..+. .+|+|.++|+++..
T Consensus 5 lL~V~nL~v~~~~~----~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l 80 (539)
T COG1123 5 LLEVENLTVEFATD----GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGL 80 (539)
T ss_pred eEEEeceEEEEecC----CcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcC
Confidence 69999999998542 233579999999999999999999999999999999999765431 47999999997631
Q ss_pred ------h-ccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ------S-LKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ------~-~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
. ..++|+||||++ .+-|-+||.+.|.-....+.. .+.++.++++.++++.+||++.... +.++++|
T Consensus 81 ~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~~yPheL 155 (539)
T COG1123 81 SEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---DRYPHQL 155 (539)
T ss_pred CHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---ccCCccc
Confidence 1 236799999996 467778999999877665532 3477888899999999999876554 5689999
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||.||+||+.+|++||+||||++||+.++.+|+++|+++.+ .|.++|+||||+. .+.++||||+||++|+++
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~~G~iV 234 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMYKGEIV 234 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999985 5999999999976 578899999999999999
Q ss_pred EecChHHHHHH
Q 006571 376 YFGKASEAMAY 386 (640)
Q Consensus 376 ~~G~~~~~~~~ 386 (640)
+.|++++++.-
T Consensus 235 E~G~~~~i~~~ 245 (539)
T COG1123 235 ETGPTEEILSN 245 (539)
T ss_pred EecCHHHHHhc
Confidence 99999999753
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=344.54 Aligned_cols=227 Identities=27% Similarity=0.335 Sum_probs=180.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||+|++|++++|+||||||||||+++|+|....++.+|+|.++|.++..
T Consensus 2 i~~~nl~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~ 73 (248)
T PRK09580 2 LSIKDLHVSV--------EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPE 73 (248)
T ss_pred eEEEEEEEEe--------CCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHH
Confidence 7899999998 2457999999999999999999999999999999999964213568999999987642
Q ss_pred hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhc-cC--C-CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHH
Q 006571 226 SL-KSKIGFVTQDDVLFPHLTVKETLTYAALL-RL--P-NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~--~-~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGG 299 (640)
.. ++.++|++|++.+++.+|+.+++.+.... +. . .........+.+++.++.+++++ ..++.+ .+.||||
T Consensus 74 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G 149 (248)
T PRK09580 74 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGG 149 (248)
T ss_pred HHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHH
Confidence 12 35699999999999888887776543211 00 0 00112233456778899999963 333322 1379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|+||+|||||+|||+.++..+.+.|+++++.|+|||++||++. .+... +|+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 150 EKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999965 35555 8999999999999999
Q ss_pred ChHHHHHHHHhc
Q 006571 379 KASEAMAYFSSI 390 (640)
Q Consensus 379 ~~~~~~~~f~~~ 390 (640)
+++.+ +.++..
T Consensus 229 ~~~~~-~~~~~~ 239 (248)
T PRK09580 229 DFTLV-KQLEEQ 239 (248)
T ss_pred CHHHH-HHHHhc
Confidence 98855 444433
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=345.82 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=180.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-----C
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-----Y 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-----~ 223 (640)
.|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|++ +
T Consensus 3 ~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (253)
T TIGR02323 3 LLQVSGLSKSY--------GGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELEL 72 (253)
T ss_pred eEEEeeeEEEe--------CCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEeccccccccc
Confidence 58999999998 24569999999999999999999999999999999999643 568999999976 4
Q ss_pred Ch----h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCcc
Q 006571 224 SK----S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSF 292 (640)
Q Consensus 224 ~~----~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~ 292 (640)
.. . .++.++|++|++. +++.+|+.||+.+..... . ........+.+.++++.+++.+ ..++ .
T Consensus 73 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~-----~ 145 (253)
T TIGR02323 73 YQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDD-----L 145 (253)
T ss_pred ccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhc-----C
Confidence 21 1 2356999999974 456679999997643211 1 0112234467889999999963 4444 3
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++. .+...||++++|++
T Consensus 146 ~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~ 224 (253)
T TIGR02323 146 PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ 224 (253)
T ss_pred chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999998764 899999999965 46678999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 225 G~i~~~~~~~~~~ 237 (253)
T TIGR02323 225 GRVVESGLTDQVL 237 (253)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=342.85 Aligned_cols=210 Identities=24% Similarity=0.414 Sum_probs=175.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|.++|.++..
T Consensus 7 ~i~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~--~~~~G~i~~~g~~~~~~~~ 76 (225)
T PRK10247 7 LLQLQNVGYLA--------GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI--SPTSGTLLFEGEDISTLKP 76 (225)
T ss_pred eEEEeccEEee--------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc--CCCCCeEEECCEEcCcCCH
Confidence 69999999998 3457999999999999999999999999999999999954 3568999999988642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++.++|++|++.+++. ||+||+.+....+. .. ..++++.++++.++|.+ ..++ .+..||||||||
T Consensus 77 ~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~-----~~~~LS~G~~qr 145 (225)
T PRK10247 77 EIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTK-----NIAELSGGEKQR 145 (225)
T ss_pred HHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcC-----CcccCCHHHHHH
Confidence 346789999999999874 99999998643321 11 12345778999999953 4443 457899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc-CCeEEEecChH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG-KGSLLYFGKAS 381 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~-~G~iv~~G~~~ 381 (640)
++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||+++|++.. + ..||++++|+ ++..+..|+++
T Consensus 146 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 146 ISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998764 8999999999764 5 5699999995 56667777664
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=379.52 Aligned_cols=219 Identities=26% Similarity=0.401 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCCh---
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSK--- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~--- 225 (640)
|+++||+++| +++++|+||||++++||+++|+||||||||||+++|+|... | +.+|+|.++|+++..
T Consensus 2 l~i~~l~~~~--------~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~-~~~~~G~i~~~g~~~~~~~~ 72 (500)
T TIGR02633 2 LEMKGIVKTF--------GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP-HGTWDGEIYWSGSPLKASNI 72 (500)
T ss_pred EEEEeEEEEe--------CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCCCeEEEECCEECCCCCH
Confidence 7899999998 34579999999999999999999999999999999999653 3 258999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.++|.+..+. ..+..|||||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~----~~~~~LSgG~~q 148 (500)
T TIGR02633 73 RDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT----RPVGDYGGGQQQ 148 (500)
T ss_pred HHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCccc----CchhhCCHHHHH
Confidence 13467999999999999999999999865322110 12233445678899999999765421 234689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||+|++|++|++++.|++++
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVATKDMST 227 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeeecCccc
Confidence 999999999999999999999999999999999999999888999999999975 4778899999999999999998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=351.92 Aligned_cols=213 Identities=22% Similarity=0.376 Sum_probs=177.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|+ .+.+.+|+|+||+|++||+++|+||||||||||+++|+|... .+|+|.+||.++..
T Consensus 2 ~i~~~nls~~~~------~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~ 72 (275)
T cd03289 2 QMTVKDLTAKYT------EGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPL 72 (275)
T ss_pred eEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCH
Confidence 489999999983 124569999999999999999999999999999999999653 47999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------t~vg~~~~~~LS 297 (640)
.+++.|+||||++.+|+. ||+||+.... ..+. +++.+.++.+||.+..+ +.++. ....||
T Consensus 73 ~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~-~g~~LS 140 (275)
T cd03289 73 QKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVD-GGCVLS 140 (275)
T ss_pred HHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecC-CCCCCC
Confidence 467889999999999985 9999996421 1122 34566777778765433 33332 345699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|||+++|++. .+ ..||||++|++|++++.
T Consensus 141 ~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~G~i~~~ 217 (275)
T cd03289 141 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEENKVRQY 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecCCeEeec
Confidence 999999999999999999999999999999999999999999875 4899999999975 34 45999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|++++++.
T Consensus 218 g~~~~l~~ 225 (275)
T cd03289 218 DSIQKLLN 225 (275)
T ss_pred CCHHHHhh
Confidence 99999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.49 Aligned_cols=214 Identities=33% Similarity=0.517 Sum_probs=172.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ..+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~-------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 72 (229)
T cd03254 2 EIEFENVNFSYD-------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISR 72 (229)
T ss_pred eEEEEEEEEecC-------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEeHHHcCH
Confidence 488999999982 13469999999999999999999999999999999999653 568999999988742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-------ccccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-------QDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~t~vg~~~~~~LS 297 (640)
.+++.++|++|++.+++. ||+||+.+.... ... .++.+.++.+++.+. .++.+ +..+..||
T Consensus 73 ~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~LS 141 (229)
T cd03254 73 KSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVL-GENGGNLS 141 (229)
T ss_pred HHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHh-hcCCCcCC
Confidence 356779999999998875 999999875321 111 122233333333221 12222 23457899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ +|+|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-I-KNADKILVLDDGKIIEE 218 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-hhCCEEEEEeCCeEEEe
Confidence 999999999999999999999999999999999999999999986 48999999999754 4 56999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+.+++..
T Consensus 219 ~~~~~~~~ 226 (229)
T cd03254 219 GTHDELLA 226 (229)
T ss_pred CCHHHHHh
Confidence 99877654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=346.51 Aligned_cols=218 Identities=30% Similarity=0.503 Sum_probs=172.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++|+++.|.. .+++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 l~i~~l~~~~~~-----~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 73 (238)
T cd03249 1 IEFKNVSFRYPS-----RPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLR 73 (238)
T ss_pred CeEEEEEEecCC-----CCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHH
Confidence 468999998821 123579999999999999999999999999999999999653 568999999988642
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++|++|++.+++ .||+||+.+..... ..++..+ .+.++++.+ +...++.. +..+..|||||
T Consensus 74 ~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 144 (238)
T cd03249 74 WLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSL--PDGYDTLV-GERGSQLSGGQ 144 (238)
T ss_pred HHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhh--ccccceee-ccCCccCCHHH
Confidence 23567999999998886 69999998753211 1111111 122233332 11122222 23457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|||++||++.. + ..||++++|++|++++.|+.
T Consensus 145 ~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~-~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 145 KQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-I-RNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-H-hhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999987 78999999999764 5 47999999999999999998
Q ss_pred HHHHHH
Q 006571 381 SEAMAY 386 (640)
Q Consensus 381 ~~~~~~ 386 (640)
+++.++
T Consensus 222 ~~~~~~ 227 (238)
T cd03249 222 DELMAQ 227 (238)
T ss_pred HHHhhc
Confidence 887654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=353.07 Aligned_cols=225 Identities=24% Similarity=0.431 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+.+ ++.+|+|.++|.++.
T Consensus 44 ~~l~i~nl~~~~--------~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~ 115 (305)
T PRK14264 44 AKLSVEDLDVYY--------GDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIY 115 (305)
T ss_pred ceEEEEEEEEEe--------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcc
Confidence 369999999998 345799999999999999999999999999999999996532 146899999999874
Q ss_pred h------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC--C-------Ccc-HHHHHHHHHHHHHHcCCCccccccc
Q 006571 225 K------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP--N-------TLT-KQQKEKRAIDVINELGLERCQDTMI 288 (640)
Q Consensus 225 ~------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~--~-------~~~-~~~~~~~v~~~l~~lgL~~~~~t~v 288 (640)
. .+++.++||+|++.+++ .||+||+.++...... . ... .....+.+.++++.++|.+......
T Consensus 116 ~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 194 (305)
T PRK14264 116 QDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRL 194 (305)
T ss_pred cccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHh
Confidence 2 34678999999999887 4999999987532100 0 011 1223456788899998854332222
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE-E
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL-I 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i-~ 367 (640)
+..+..|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||++ +
T Consensus 195 -~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~ 271 (305)
T PRK14264 195 -DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAV 271 (305)
T ss_pred -cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEE
Confidence 344678999999999999999999999999999999999999999999999976 589999999975 467889997 5
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|+++++.
T Consensus 272 ~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVEYDDTDKIF 288 (305)
T ss_pred EecCCEEEEeCCHHHHH
Confidence 78999999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=378.55 Aligned_cols=216 Identities=25% Similarity=0.396 Sum_probs=184.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~--------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (501)
T PRK11288 4 YLSFDGIGKTF--------PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFAST 73 (501)
T ss_pred eEEEeeeEEEE--------CCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCH
Confidence 69999999998 34579999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.+++.|+||+|++.+++.+||.||+.++............+..+++.++++.+||.+..+. .+.+||||||||
T Consensus 74 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSgGq~qr 148 (501)
T PRK11288 74 TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDT-----PLKYLSIGQRQM 148 (501)
T ss_pred HHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCC-----chhhCCHHHHHH
Confidence 2467899999999999999999999986421111112334445678899999999765554 356899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||+|++|++|+++..++.
T Consensus 149 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 149 VEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999878999999999975 46788999999999999877653
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=322.60 Aligned_cols=219 Identities=29% Similarity=0.481 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.+..++++.+|.. ..+.+|+|||++|.+||.++++||||||||||||+++|... +..|+|.+||+++... -
T Consensus 3 ~l~~~~~sl~y~g------~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gP-g 73 (259)
T COG4525 3 MLNVSHLSLSYEG------KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGP-G 73 (259)
T ss_pred eeehhheEEecCC------cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCC-C
Confidence 4677888888832 22569999999999999999999999999999999999653 5689999999998532 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..-|.|||++.|+|.+||.||+.|+..++ .+.+.++.+++.+.+..+||.+..+. ++.+|||||||||.|||
T Consensus 74 aergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~-----~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 74 AERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHK-----YIWQLSGGMRQRVGIAR 145 (259)
T ss_pred ccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCccccccc-----ceEeecchHHHHHHHHH
Confidence 33589999999999999999999999886 57889999999999999999887665 45799999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~~ 385 (640)
||..+|++|+||||+++||.-+++++.++|-++++ .|+.++++||+..+ ..-++++++||+. |||+..=+++=..+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df~rR 224 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDFARR 224 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCHHHH
Confidence 99999999999999999999999999999999876 49999999999765 5568999999985 79998877763333
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-43 Score=432.60 Aligned_cols=215 Identities=23% Similarity=0.389 Sum_probs=182.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.| ++++ .+|+|.+||.|+.
T Consensus 1307 G~I~f~nVsf~Y~------~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlr-l~~p-~~G~I~IDG~di~~i~ 1378 (1560)
T PTZ00243 1307 GSLVFEGVQMRYR------EGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMR-MVEV-CGGEIRVNGREIGAYG 1378 (1560)
T ss_pred CeEEEEEEEEEeC------CCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhC-CCCC-CCcEEEECCEEcccCC
Confidence 3699999999993 123569999999999999999999999999999999997 4544 5899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcC
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (640)
+.+|++|+|||||+.+|+. ||+|||.... ..+++ ++.++++..+ |+++.||.+|.. ...|
T Consensus 1379 l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sde----eI~~Al~~a~l~~~I~~lp~Gldt~vge~-G~nL 1446 (1560)
T PTZ00243 1379 LRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASSA----EVWAALELVGLRERVASESEGIDSRVLEG-GSNY 1446 (1560)
T ss_pred HHHHHhcceEECCCCccccc-cHHHHhCccc------CCCHH----HHHHHHHHCCChHHHhhCcccccccccCC-cCcC
Confidence 3689999999999999976 9999996421 22332 3444444443 456789999864 4579
Q ss_pred CHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~-P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||++|||||+++ |+|||||||||+||+.+...|.+.|++.. +++|||+|+|+++. ...||+|++|++|+|+
T Consensus 1447 SgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t--i~~~DrIlVLd~G~Vv 1523 (1560)
T PTZ00243 1447 SVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT--VAQYDKIIVMDHGAVA 1523 (1560)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH--HHhCCEEEEEECCEEE
Confidence 99999999999999996 89999999999999999999999999864 47999999999864 5779999999999999
Q ss_pred EecChHHHHH
Q 006571 376 YFGKASEAMA 385 (640)
Q Consensus 376 ~~G~~~~~~~ 385 (640)
+.|+|+++++
T Consensus 1524 E~Gt~~eLl~ 1533 (1560)
T PTZ00243 1524 EMGSPRELVM 1533 (1560)
T ss_pred EECCHHHHHh
Confidence 9999999874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=349.25 Aligned_cols=220 Identities=23% Similarity=0.389 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++|. +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++....+
T Consensus 6 ~l~~~~l~~~~~-------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~ 76 (272)
T PRK15056 6 GIVVNDVTVTWR-------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQ 76 (272)
T ss_pred eEEEEeEEEEec-------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhc
Confidence 589999999982 23579999999999999999999999999999999999653 468999999998754333
Q ss_pred -CcEEEEccCCCCC--CCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 229 -SKIGFVTQDDVLF--PHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 229 -~~i~yV~Q~~~l~--~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.++|++|++.+. ...++++|+.++...... ........++++.++++.+||.+..++. +..||||||||+
T Consensus 77 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgG~~qrv 151 (272)
T PRK15056 77 KNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQ-----IGELSGGQKKRV 151 (272)
T ss_pred cceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 4699999997652 234789998764211000 0011223345677889999998766654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+++++ +|++++.|+++++.
T Consensus 152 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 152 FLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 9999999999999999999999999999999999999877999999999975 467899999887 89999999988763
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=386.02 Aligned_cols=227 Identities=24% Similarity=0.380 Sum_probs=189.3
Q ss_pred eeEEEEeEEEEEeeccc--c-ccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGM--T-SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~--~-~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
..|+++||++.|..... . ....+.+|+||||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECC
Confidence 36999999999842100 0 0012469999999999999999999999999999999999653 46899999999874
Q ss_pred h-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 006571 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (640)
. .++++|+||+|++ .+++.+||.||+.+...... .....+..+++.++++.+||. +..++ +++
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~-----~~~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWR-----YPH 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhC-----Ccc
Confidence 2 2456899999997 58899999999998654321 112344556788999999995 44454 457
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+|||||||||+|||||+.+|+||||||||+|||+.++..++++|++++++ |.|||++|||+. .+.++||+|++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999865 899999999975 4778999999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=340.80 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=171.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh-hc-cCcEEEEccCCC--CCCCC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK-SL-KSKIGFVTQDDV--LFPHL 244 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~-~~-~~~i~yV~Q~~~--l~~~l 244 (640)
+|+|+||+|++|++++|+||||||||||+|+|+|... | +.+|+|.++|+++.. .. ++.++|++|++. +++.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP-PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCccc
Confidence 5899999999999999999999999999999999653 3 168999999998753 22 357999999984 56678
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 324 (640)
|+.||+.+...... .......+++.++++.++|.+.. ...+..+..|||||||||+|||+|+.+|+||||||||+
T Consensus 80 t~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~ 154 (230)
T TIGR02770 80 TMGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPE--EVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT 154 (230)
T ss_pred CHHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchH--HHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999987653221 12233456788999999997320 01123457899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+.++..+.+.|++++++ |+|||+++|++. ++..+||++++|++|+++..|+++++.
T Consensus 155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999864 899999999976 577889999999999999999998874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=340.12 Aligned_cols=209 Identities=30% Similarity=0.545 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ...+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~ 73 (220)
T cd03245 2 RIEFRNVSFSYP------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDP 73 (220)
T ss_pred eEEEEEEEEEcC------CCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCH
Confidence 378999999982 123569999999999999999999999999999999999653 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc------CccCCcCCH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG------GSFVRGVSG 298 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg------~~~~~~LSG 298 (640)
..++.++|++|++.+++ .||.||+.+.... .. .+++.++++.+++.+..+.... ...+..|||
T Consensus 74 ~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSg 143 (220)
T cd03245 74 ADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred HHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCH
Confidence 34568999999999887 6999999874211 11 2345567777777665443221 123468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+ +.||++++|++|++++.|
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIVADG 220 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999998764 89999999976 34 799999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=377.37 Aligned_cols=216 Identities=20% Similarity=0.312 Sum_probs=183.2
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----h
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S 226 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-----~ 226 (640)
++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|+++.. .
T Consensus 1 ~~nl~~~~--------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~ 70 (491)
T PRK10982 1 MSNISKSF--------PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEA 70 (491)
T ss_pred CCceEEEe--------CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHH
Confidence 36888888 34579999999999999999999999999999999999653 468999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++||+|++.+++.+||+||+.++............+..++++++++.+++.+..++. +.+|||||||||+|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 145 (491)
T PRK10982 71 LENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-----VATLSVSQMQMIEI 145 (491)
T ss_pred HhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCc-----hhhCCHHHHHHHHH
Confidence 3567999999999999999999998764211010112334456788999999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||+|++|++|++++.|+++++
T Consensus 146 A~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 146 AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 99999999999999999999999999999999999888999999999975 56788999999999999999997664
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=344.11 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC------CEe
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN------DHP 222 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~------G~~ 222 (640)
.|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++ |++
T Consensus 10 ~i~~~~~~~~~--------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~--~~~G~v~~~G~~~~~g~~ 79 (257)
T PRK14246 10 VFNISRLYLYI--------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKIKVDGKVLYFGKD 79 (257)
T ss_pred heeeeeEEEec--------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCcCceeEcCEEEECCcc
Confidence 69999999998 45679999999999999999999999999999999999643 345555554 455
Q ss_pred CC----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 223 YS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 223 ~~----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
+. ...++.++|++|++.+++.+||+||+.++..... ...+++..+++.++++.+++.+...... +..+..|||
T Consensus 80 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~LS~ 156 (257)
T PRK14246 80 IFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRL-NSPASQLSG 156 (257)
T ss_pred cccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhh-cCCcccCCH
Confidence 42 1346789999999999998999999998754221 1123445567888999999863211111 224578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+.||++++|++|++++.|
T Consensus 157 G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 157 GQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999865 689999999975 466889999999999999999
Q ss_pred ChHHHH
Q 006571 379 KASEAM 384 (640)
Q Consensus 379 ~~~~~~ 384 (640)
+++++.
T Consensus 235 ~~~~~~ 240 (257)
T PRK14246 235 SSNEIF 240 (257)
T ss_pred CHHHHH
Confidence 998875
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=378.20 Aligned_cols=221 Identities=29% Similarity=0.445 Sum_probs=185.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC----------
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN---------- 219 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~---------- 219 (640)
|+++|++++| +++++|+|+||+|++||+++|+||||||||||+|+|+|.+..++.+|+|.++
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~ 72 (520)
T TIGR03269 1 IEVKNLTKKF--------DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72 (520)
T ss_pred CEEEEEEEEE--------CCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccc
Confidence 4789999998 3457999999999999999999999999999999999964212458999997
Q ss_pred -------------CEeC----------C----hhccCcEEEEccC-CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH
Q 006571 220 -------------DHPY----------S----KSLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271 (640)
Q Consensus 220 -------------G~~~----------~----~~~~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v 271 (640)
|.++ . ...++.++||+|+ +.+++.+||+||+.++.... ..+..+.++++
T Consensus 73 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~ 149 (520)
T TIGR03269 73 ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEAVGRA 149 (520)
T ss_pred ccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHHHHHH
Confidence 3221 0 1235679999997 67888899999999875432 12344556778
Q ss_pred HHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE
Q 006571 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVT 350 (640)
Q Consensus 272 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~ 350 (640)
.++++.+||++..+. .+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+++++ .|+|||+
T Consensus 150 ~~~l~~~gl~~~~~~-----~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvii 224 (520)
T TIGR03269 150 VDLIEMVQLSHRITH-----IARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVL 224 (520)
T ss_pred HHHHHHcCChhhhhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEE
Confidence 999999999876654 3578999999999999999999999999999999999999999999999975 4899999
Q ss_pred EeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHH
Q 006571 351 TIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 351 ~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
+||++. .+.+.||+|++|++|++++.|+++++...+
T Consensus 225 vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 225 TSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred EeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 999975 466889999999999999999998887654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=343.41 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=182.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-C--CcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-P--TVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~--~~~G~I~~~G~~~~ 224 (640)
..|+++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|.... + +.+|+|.++|.++.
T Consensus 15 ~~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~ 86 (265)
T PRK14252 15 QKSEVNKLNFYY--------GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVN 86 (265)
T ss_pred ceEEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccc
Confidence 369999999998 245799999999999999999999999999999999996542 1 16899999997652
Q ss_pred --------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc-HHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT-KQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 --------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
..+++.++|++|++.+++. ||+||+.++.... ... ....++++.++++.+++.+...... +..+..
T Consensus 87 ~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~ 161 (265)
T PRK14252 87 ILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRL-GDLAFN 161 (265)
T ss_pred ccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHH-hCCccc
Confidence 1346789999999999986 9999999865322 112 2223456777888887743211111 234568
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+++
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~~l~~G~i~ 239 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTAYMYMGELI 239 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 689999999975 467889999999999999
Q ss_pred EecChHHHH
Q 006571 376 YFGKASEAM 384 (640)
Q Consensus 376 ~~G~~~~~~ 384 (640)
+.|+++++.
T Consensus 240 ~~g~~~~~~ 248 (265)
T PRK14252 240 EFGATDTIF 248 (265)
T ss_pred EeCCHHHHH
Confidence 999988764
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=332.82 Aligned_cols=190 Identities=31% Similarity=0.438 Sum_probs=162.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++| +++.+|+|+||++++||+++|+||||||||||+++|+|....++.+|+|.+||+++..
T Consensus 1 l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~ 72 (200)
T cd03217 1 LEIKDLHVSV--------GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE 72 (200)
T ss_pred CeEEEEEEEe--------CCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH
Confidence 4789999998 2457999999999999999999999999999999999964223568999999998753
Q ss_pred h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 ~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
. .++.++|++|++.+++.+|+++++. . ....||||||||+
T Consensus 73 ~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G~~qrv 113 (200)
T cd03217 73 ERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGGEKKRN 113 (200)
T ss_pred HHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHHHHHHH
Confidence 1 2446999999999998888887760 0 1146999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh-ccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .||++++|++|++++.|+ .++
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~~-~~~ 191 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSGD-KEL 191 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEcc-HHH
Confidence 9999999999999999999999999999999999999877899999999976 4555 799999999999999994 446
Q ss_pred HHHHH
Q 006571 384 MAYFS 388 (640)
Q Consensus 384 ~~~f~ 388 (640)
..+|.
T Consensus 192 ~~~~~ 196 (200)
T cd03217 192 ALEIE 196 (200)
T ss_pred Hhhhc
Confidence 55554
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=318.86 Aligned_cols=212 Identities=32% Similarity=0.507 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++++++.+.. ..+...||++|++.|++||.+||||||||||||||-+|+|.. . +++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~----~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~-~ssGeV~l~G~~L~~ldE 79 (228)
T COG4181 6 IIEVHHLSKTVGQ----GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-D-PSSGEVRLLGQPLHKLDE 79 (228)
T ss_pred eeehhhhhhhhcC----CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-C-CCCceEEEcCcchhhcCH
Confidence 5888888887632 234568999999999999999999999999999999999943 3 569999999999742
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ----~~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+| +++|+|||...|.|+||..||+...+.++.. +..+....+.++++.+||.+..+. ++.+|||||
T Consensus 80 d~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~H-----yP~qLSGGE 151 (228)
T COG4181 80 DARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTH-----YPAQLSGGE 151 (228)
T ss_pred HHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCccccccc-----CccccCchH
Confidence 233 6899999999999999999999999887642 233445668889999999876653 568999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
+|||+||||+...|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||++-|.+|+++.
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999875 5999999999975 567899999999999975
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=332.22 Aligned_cols=199 Identities=24% Similarity=0.422 Sum_probs=170.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~ 225 (640)
+|+++|++++| +.+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~--------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~ 70 (204)
T PRK13538 1 MLEARNLACER--------DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRD 70 (204)
T ss_pred CeEEEEEEEEE--------CCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchH
Confidence 37899999998 24579999999999999999999999999999999999653 56899999999874 2
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+++++|++|++.+++.+||.||+.+....+. . ...++++++++.+||.+..++. +..||||||||++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~ 139 (204)
T PRK13538 71 EYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVA 139 (204)
T ss_pred HhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHH
Confidence 356789999999999999999999998754321 1 2345678899999998666553 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
|||||+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++.. +.+..+|++++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i~~~~~~~~~~ 202 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLP-VASDKVRKLRL 202 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhh-hccCCceEEec
Confidence 9999999999999999999999999999999999998778999999999764 55555777776
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-41 Score=341.57 Aligned_cols=215 Identities=33% Similarity=0.515 Sum_probs=171.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|. +.+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~v~~~g~~~~~~~~~ 71 (236)
T cd03253 1 IEFENVTFAYD-------PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD--VSSGSILIDGQDIREVTLD 71 (236)
T ss_pred CEEEEEEEEeC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCEEEECCEEhhhCCHH
Confidence 47899999882 13569999999999999999999999999999999999653 568999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+++.++|++|++.+++ .||+||+.++... ........ .+.+.++.+ +...++.+ +..+..|||||
T Consensus 72 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~-----~~~~~~~~~~~~~~l~~~~~~l--~~~~~~~~-~~~~~~LS~G~ 142 (236)
T cd03253 72 SLRRAIGVVPQDTVLFN-DTIGYNIRYGRPD-----ATDEEVIEAAKAAQIHDKIMRF--PDGYDTIV-GERGLKLSGGE 142 (236)
T ss_pred HHHhhEEEECCCChhhc-chHHHHHhhcCCC-----CCHHHHHHHHHHcCcHHHHHhc--cccccchh-hcCCCcCCHHH
Confidence 34667999999999886 6999999875321 11111111 122233322 22223322 23357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||+++|++.. + ..||++++|++|++++.|+.
T Consensus 143 ~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~-~~~d~~~~l~~g~i~~~~~~ 219 (236)
T cd03253 143 KQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-I-VNADKIIVLKDGRIVERGTH 219 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999999877 9999999999764 4 45999999999999999998
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++.+
T Consensus 220 ~~~~~ 224 (236)
T cd03253 220 EELLA 224 (236)
T ss_pred HHHhh
Confidence 77643
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=342.47 Aligned_cols=200 Identities=29% Similarity=0.468 Sum_probs=172.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
+|+|+||+|++||+++|+||||||||||+++|+|.. ++ +|+|.++|+++.. ..++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~--~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL--PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC--CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 799999999999999999999999999999999964 34 8999999998742 3456799999998888889999
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh-------CCCEEEEe
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII-------NPSLLFLD 320 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~-------~P~iLlLD 320 (640)
||+.+.... .....+..++++++++.+||.+..++. +..||||||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999986321 122333456788999999997666553 46899999999999999998 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL 221 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999877999999999965 477899999999999999999988763
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=378.64 Aligned_cols=227 Identities=27% Similarity=0.463 Sum_probs=187.5
Q ss_pred eeEEEEeEEEEEeeccc---cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 148 IYLKFTDVTYKVILKGM---TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~---~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
..|+++||+++|..... ...+++.+|+||||+|++||+++|+||||||||||+|+|+|.+ + .+|+|+++|+++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~--~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI--N-SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC--C-CCcEEEECCEEcc
Confidence 36999999999831100 0001357999999999999999999999999999999999964 3 5899999998864
Q ss_pred h-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC
Q 006571 225 K-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~ 294 (640)
. .+++.++||+|++ .+++.+||.||+.++...+.. .....+.++++.++++.+||. +..+. .+.
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHR-----YPA 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhc-----CCc
Confidence 2 1356799999997 488889999999987532211 123344556788999999996 34554 457
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999865 899999999975 4778899999999999
Q ss_pred EEEecChHHHH
Q 006571 374 LLYFGKASEAM 384 (640)
Q Consensus 374 iv~~G~~~~~~ 384 (640)
+++.|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999998874
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=384.27 Aligned_cols=225 Identities=22% Similarity=0.361 Sum_probs=187.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC-----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----- 223 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~----- 223 (640)
.|+++||++.|... .+.+++|+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++|..+
T Consensus 12 ~l~v~~l~~~y~~~----~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~--p~~G~i~~~g~~~~~~~~ 85 (623)
T PRK10261 12 VLAVENLNIAFMQE----QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE--QAGGLVQCDKMLLRRRSR 85 (623)
T ss_pred eEEEeceEEEecCC----CCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCeEEEECCEEeccccc
Confidence 69999999998311 123579999999999999999999999999999999999653 4589999998643
Q ss_pred --------Ch----hcc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 006571 224 --------SK----SLK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (640)
Q Consensus 224 --------~~----~~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (640)
.. .++ +.||||+|++ .+++.+||.||+.++..... ..+..+.++++.++++.+||++..+ .
T Consensus 86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~--~ 161 (623)
T PRK10261 86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT--I 161 (623)
T ss_pred cccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh--H
Confidence 11 122 4799999998 68888999999999865321 2345556678899999999964210 1
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
-+.++.+|||||||||+|||||+.+|+||||||||++||+.++.+++++|++++++ |+|||++||++. .+.++||||+
T Consensus 162 ~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~~adri~ 240 (623)
T PRK10261 162 LSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAEIADRVL 240 (623)
T ss_pred HhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEE
Confidence 12356789999999999999999999999999999999999999999999999865 899999999975 4678999999
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|+++++.
T Consensus 241 vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 241 VMYQGEAVETGSVEQIF 257 (623)
T ss_pred EeeCCeecccCCHHHhh
Confidence 99999999999988774
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=323.44 Aligned_cols=170 Identities=31% Similarity=0.607 Sum_probs=153.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
++++||+++| +.+++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (173)
T cd03230 1 IEVRNLSKRY--------GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEE 70 (173)
T ss_pred CEEEEEEEEE--------CCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHh
Confidence 4689999988 23469999999999999999999999999999999999643 468999999998742 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+|+.||+. ||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~l 106 (173)
T cd03230 71 VKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLAL 106 (173)
T ss_pred hhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHH
Confidence 5678999999999999899999973 99999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. .+.+.||++++|++|++
T Consensus 107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 107 AQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999877899999999965 56678999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=330.37 Aligned_cols=195 Identities=26% Similarity=0.427 Sum_probs=169.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hh
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KS 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~ 226 (640)
|+++||++.| +++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++. ..
T Consensus 1 l~i~~l~~~~--------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (201)
T cd03231 1 LEADELTCER--------DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDS 70 (201)
T ss_pred CEEEEEEEEe--------CCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHH
Confidence 4789999998 34579999999999999999999999999999999999653 56899999998864 24
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+++.+||+||+.+.... . .+++++++++.++|.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~l 136 (201)
T cd03231 71 IARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVAL 136 (201)
T ss_pred hhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHH
Confidence 567899999999998889999999875311 0 235678889999998766553 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
||+|+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|++||++.. +...||+++++
T Consensus 137 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 137 ARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999988779999999999764 66789999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=332.41 Aligned_cols=202 Identities=23% Similarity=0.332 Sum_probs=173.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-h
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-S 226 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~ 226 (640)
..|+++|++++| +++++|+++||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 10 ~~l~~~~l~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~ 79 (214)
T PRK13543 10 PLLAAHALAFSR--------NEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGD 79 (214)
T ss_pred ceEEEeeEEEec--------CCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchh
Confidence 369999999987 34579999999999999999999999999999999999643 568999999998753 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+|+.||+.+....+. . ..++.+.++++.++|.+..++. +..||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 148 (214)
T PRK13543 80 RSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQKKRLAL 148 (214)
T ss_pred hhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCC-----hhhCCHHHHHHHHH
Confidence 34569999999999998999999988654321 1 1234567888999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||+++.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 99999999999999999999999999999999999888999999999975 57789999999864
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=374.51 Aligned_cols=224 Identities=23% Similarity=0.410 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC---CcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP---TVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~---~~~G~I~~~G~~~~~ 225 (640)
+|+++||+++|... ...+++|+|+||+|++||++||+||||||||||+|+|+|.+.+. +.+|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~----~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~ 80 (529)
T PRK15134 5 LLAIENLSVAFRQQ----QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80 (529)
T ss_pred eEEEeceEEEecCC----CCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEeccc
Confidence 69999999998311 11357999999999999999999999999999999999976421 258999999998742
Q ss_pred -------hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc---ccccccCcc
Q 006571 226 -------SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC---QDTMIGGSF 292 (640)
Q Consensus 226 -------~~~-~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~t~vg~~~ 292 (640)
..+ +.+|||+|++. +++.+|+.||+.+...... ..+..+..++++++++.+||.+. .+. .
T Consensus 81 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 153 (529)
T PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD-----Y 153 (529)
T ss_pred CCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh-----C
Confidence 122 57999999974 6777899999986543211 23345566778999999999752 243 4
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|++++++ |+|||++||++. .+..+||+|++|++
T Consensus 154 ~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri~~l~~ 232 (529)
T PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRVAVMQN 232 (529)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEEEEEEC
Confidence 5789999999999999999999999999999999999999999999999865 899999999976 46788999999999
Q ss_pred CeEEEecChHHHH
Q 006571 372 GSLLYFGKASEAM 384 (640)
Q Consensus 372 G~iv~~G~~~~~~ 384 (640)
|++++.|+++++.
T Consensus 233 G~i~~~g~~~~~~ 245 (529)
T PRK15134 233 GRCVEQNRAATLF 245 (529)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=409.70 Aligned_cols=224 Identities=26% Similarity=0.395 Sum_probs=198.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|. .+++.+|+||||.|++||++||+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 1936 ~~L~v~nLsK~Y~------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~ 2007 (2272)
T TIGR01257 1936 DILRLNELTKVYS------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNI 2007 (2272)
T ss_pred ceEEEEEEEEEEC------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchH
Confidence 3699999999982 123679999999999999999999999999999999999654 568999999998852
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.|||+||++.+++.+||+|||.+.+..+ ..+.++.+++++++++.+||.+..|+. ++.|||||||||
T Consensus 2008 ~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~-----~~~LSGGqKqRL 2079 (2272)
T TIGR01257 2008 SDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRL-----AGTYSGGNKRKL 2079 (2272)
T ss_pred HHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHH
Confidence 34678999999999999999999999877654 234445566788999999998877765 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 2080 slA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q~Lk 2158 (2272)
T TIGR01257 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQHLK 2158 (2272)
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999999878999999999965 688899999999999999999999998
Q ss_pred HHHH
Q 006571 385 AYFS 388 (640)
Q Consensus 385 ~~f~ 388 (640)
..|.
T Consensus 2159 ~~~g 2162 (2272)
T TIGR01257 2159 SKFG 2162 (2272)
T ss_pred HHhC
Confidence 8775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=374.20 Aligned_cols=223 Identities=21% Similarity=0.384 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.|.. .+++++|+|+||+|++||+++|+||||||||||+|+|+|.+ .|+.+|+|.++|+++..
T Consensus 259 ~l~~~~l~~~~~~-----~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~ 332 (506)
T PRK13549 259 ILEVRNLTAWDPV-----NPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNP 332 (506)
T ss_pred eEEEecCcccccc-----ccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCH
Confidence 6999999998721 12356999999999999999999999999999999999965 33368999999998642
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCCC--CccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPN--TLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LS 297 (640)
..++.++||+|++ .+++.+||.||+.++....... .....+..++++++++.++|. +..++. +..||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 407 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA-----IARLS 407 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccc-----cccCC
Confidence 2356799999995 4788899999998764211100 012334456788999999996 455543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++|+++..
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999999
Q ss_pred cChHHH
Q 006571 378 GKASEA 383 (640)
Q Consensus 378 G~~~~~ 383 (640)
|+++++
T Consensus 487 ~~~~~~ 492 (506)
T PRK13549 487 LINHNL 492 (506)
T ss_pred eccccC
Confidence 987664
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=373.15 Aligned_cols=223 Identities=26% Similarity=0.438 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC-CEe---C
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHP---Y 223 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~-G~~---~ 223 (640)
..|+++||+++|... ..+.+++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++ |.+ +
T Consensus 278 ~~l~~~~l~~~~~~~---~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~ 352 (520)
T TIGR03269 278 PIIKVRNVSKRYISV---DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDM 352 (520)
T ss_pred ceEEEeccEEEeccC---CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccc
Confidence 369999999998310 0123579999999999999999999999999999999999653 568999996 532 2
Q ss_pred C-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-----cccccccCc
Q 006571 224 S-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-----CQDTMIGGS 291 (640)
Q Consensus 224 ~-------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~t~vg~~ 291 (640)
. ...+++++||+|++.+++.+||.||+.+..... ...+..++++.++++.+||.+ ..++
T Consensus 353 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 423 (520)
T TIGR03269 353 TKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDK----- 423 (520)
T ss_pred cccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhC-----
Confidence 1 123567999999999999999999999764321 223334567889999999964 2343
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.+..|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||++. .+.++||++++|+
T Consensus 424 ~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~ 502 (520)
T TIGR03269 424 YPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMR 502 (520)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 45789999999999999999999999999999999999999999999999764 899999999975 5778999999999
Q ss_pred CCeEEEecChHHHHH
Q 006571 371 KGSLLYFGKASEAMA 385 (640)
Q Consensus 371 ~G~iv~~G~~~~~~~ 385 (640)
+|++++.|+++++.+
T Consensus 503 ~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 503 DGKIVKIGDPEEIVE 517 (520)
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=334.29 Aligned_cols=208 Identities=27% Similarity=0.445 Sum_probs=169.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|. ..++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~------~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 73 (221)
T cd03244 2 DIEFKNVSLRYR------PNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE--LSSGSILIDGVDISKIGL 73 (221)
T ss_pred cEEEEEEEEecC------CCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhHhCCH
Confidence 378999999982 123579999999999999999999999999999999999643 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~LS 297 (640)
.+++.++|++|++.+++ .||+||+.+... ... +++.+.++.+++.+.. ++.. +..+..||
T Consensus 74 ~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~~LS 141 (221)
T cd03244 74 HDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGENLS 141 (221)
T ss_pred HHHhhhEEEECCCCcccc-chHHHHhCcCCC------CCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCCcCC
Confidence 45678999999999886 599999975311 111 2344455555554332 2222 23567899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++.+ +.|||++||++.. + ..||++++|++|++++.
T Consensus 142 ~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~~~~~ 218 (221)
T cd03244 142 VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-I-IDSDRILVLDKGRVVEF 218 (221)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-hhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 6899999999754 4 45999999999999988
Q ss_pred cC
Q 006571 378 GK 379 (640)
Q Consensus 378 G~ 379 (640)
|+
T Consensus 219 ~~ 220 (221)
T cd03244 219 DS 220 (221)
T ss_pred CC
Confidence 76
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=339.68 Aligned_cols=202 Identities=25% Similarity=0.462 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++| +
T Consensus 4 ~l~~~~l~~~~--------~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~-------~ 66 (251)
T PRK09544 4 LVSLENVSVSF--------GQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNG-------K 66 (251)
T ss_pred EEEEeceEEEE--------CCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECC-------c
Confidence 68999999998 34579999999999999999999999999999999999653 4689999987 2
Q ss_pred CcEEEEccCCCCCCC--CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPH--LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~--lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
..++|++|++.+++. .|+.+++.+. + ... .+++.++++.+||.+..++. +..||||||||++|
T Consensus 67 ~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrv~l 131 (251)
T PRK09544 67 LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAP-----MQKLSGGETQRVLL 131 (251)
T ss_pred cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCC-----hhhCCHHHHHHHHH
Confidence 469999999888765 3788877542 1 111 23467889999998766653 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||+|++|++ ++++.|+++++.
T Consensus 132 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~~~ 208 (251)
T PRK09544 132 ARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEVVS 208 (251)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHHHh
Confidence 99999999999999999999999999999999999765 899999999975 56788999999964 799999988764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-42 Score=326.52 Aligned_cols=220 Identities=25% Similarity=0.456 Sum_probs=195.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+++++||+++| +.+.||+|+|++|++|.+++|+|||||||||||.+++ |+.. .++|+|+++|.++.
T Consensus 1 MI~i~nv~K~y--------~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~s-RL~~-~d~G~i~i~g~~~~~~~s 70 (252)
T COG4604 1 MITIENVSKSY--------GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS-RLLK-KDSGEITIDGLELTSTPS 70 (252)
T ss_pred CeeehhhhHhh--------CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHH-Hhcc-ccCceEEEeeeecccCCh
Confidence 47899999998 5788999999999999999999999999999999999 5653 56899999999985
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.+.++++.+-|+..+-..+||+|-+.|+..... ..-..++++..+++.++.++|.+..|.. ..+||||||||.
T Consensus 71 ~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dry-----Ld~LSGGQrQRA 144 (252)
T COG4604 71 KELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRY-----LDELSGGQRQRA 144 (252)
T ss_pred HHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHh-----HHhcccchhhhh
Confidence 3577889999999999889999999999853221 2233566778899999999999888764 478999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
-||+.|+.+.+.++||||.++||...+..+++.|++++++ |+||+++.||.+. +..++|+|+-|++|+++..|+++|+
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~G~vv~~G~~~ei 223 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKNGKVVKQGSPDEI 223 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecCCEEEecCCHHHh
Confidence 9999999999999999999999999999999999999976 9999999999875 5678899999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
+.
T Consensus 224 i~ 225 (252)
T COG4604 224 IQ 225 (252)
T ss_pred cC
Confidence 64
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=405.28 Aligned_cols=223 Identities=21% Similarity=0.369 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||++.|. .+++.+|+|+|+++++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 927 ~~L~I~nLsK~y~------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~ 998 (2272)
T TIGR01257 927 PGVCVKNLVKIFE------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNL 998 (2272)
T ss_pred ceEEEEeEEEEec------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchH
Confidence 4799999999982 124679999999999999999999999999999999999654 568999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..|+.+|||+|++.+++.+||+|||.|.+..+. .+.++.+++++++++.+||.+..++. +++|||||||||
T Consensus 999 ~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~-----~~~LSGGqKQRL 1070 (2272)
T TIGR01257 999 DAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEE-----AQDLSGGMQRKL 1070 (2272)
T ss_pred HHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHH
Confidence 356789999999999999999999999876542 33445566789999999998877654 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+||+||+.+|+||||||||+|||+.++..+++.|++++ +|+|||++||++. ++..+||||++|++|+++..|+++++.
T Consensus 1071 sLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999999995 5999999999965 577899999999999999999999998
Q ss_pred HHHH
Q 006571 385 AYFS 388 (640)
Q Consensus 385 ~~f~ 388 (640)
+.|.
T Consensus 1149 ~~~g 1152 (2272)
T TIGR01257 1149 NCFG 1152 (2272)
T ss_pred HhcC
Confidence 7764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=418.09 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=183.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+|+||+|+|+ .+.+++|+||||+|+|||.+||+|+||||||||+++|.|. ++ .+|+|.+||.|+.
T Consensus 1216 g~I~f~nVs~~Y~------~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-~~--~~G~I~IdG~di~~i~ 1286 (1490)
T TIGR01271 1216 GQMDVQGLTAKYT------EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-LS--TEGEIQIDGVSWNSVT 1286 (1490)
T ss_pred CeEEEEEEEEEeC------CCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-cC--CCcEEEECCEEcccCC
Confidence 4699999999993 2346899999999999999999999999999999999975 43 4899999999986
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcC
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGV 296 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~L 296 (640)
+.+|++|+||||++.+|+. ||+|||.... ..+ ++++.++++..+| +++.|+.+|+. ...|
T Consensus 1287 ~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e~-G~nL 1354 (1490)
T TIGR01271 1287 LQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG-GYVL 1354 (1490)
T ss_pred HHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCccccccccccC-CCcC
Confidence 3578999999999999986 9999996421 122 2345555655544 46788988764 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||||+++|+|||||||||+||+.+...|.+.|++.. +++|||+++|+++. ...||+|++|++|+|++
T Consensus 1355 SgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t--i~~~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1355 SNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA--LLECQQFLVIEGSSVKQ 1431 (1490)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999865 47999999999864 46699999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+|+++++
T Consensus 1432 ~g~p~~Ll~ 1440 (1490)
T TIGR01271 1432 YDSIQKLLN 1440 (1490)
T ss_pred eCCHHHHHc
Confidence 999999873
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=325.36 Aligned_cols=194 Identities=25% Similarity=0.391 Sum_probs=165.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~--------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (198)
T TIGR01189 1 LAARNLACSR--------GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDE 70 (198)
T ss_pred CEEEEEEEEE--------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHH
Confidence 4789999988 34579999999999999999999999999999999999543 568999999998642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.++|++|++.+++.+||.||+.+....+. . .++++.++++.++|.+..++. +..||||||||++|
T Consensus 71 ~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~l 138 (198)
T TIGR01189 71 PHRNILYLGHLPGLKPELSALENLHFWAAIHG----G---AQRTIEDALAAVGLTGFEDLP-----AAQLSAGQQRRLAL 138 (198)
T ss_pred hhhheEEeccCcccccCCcHHHHHHHHHHHcC----C---cHHHHHHHHHHcCCHHHhcCC-----hhhcCHHHHHHHHH
Confidence 45789999999999988999999988654321 1 134577889999998766654 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
||||+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. -.|++++.
T Consensus 139 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 139 ARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999998779999999999754 34677764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=333.13 Aligned_cols=202 Identities=26% Similarity=0.357 Sum_probs=168.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
+.++|++++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 23 l~~~~~~~~~--------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---- 88 (224)
T cd03220 23 LGILGRKGEV--------GEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---- 88 (224)
T ss_pred hhhhhhhhhc--------CCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh----
Confidence 5667777766 45789999999999999999999999999999999999643 568999999987531
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
..+...+++.+||+||+.+..... .....+.++++.++++.++|++..++. +..||||||||++|||+
T Consensus 89 ----~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~lara 156 (224)
T cd03220 89 ----LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLP-----VKTYSSGMKARLAFAIA 156 (224)
T ss_pred ----hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHH
Confidence 112234556789999999875432 123344455678889999998777654 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999965 466789999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=322.08 Aligned_cols=171 Identities=36% Similarity=0.631 Sum_probs=153.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|.+. +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~--------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 70 (178)
T cd03229 1 LELKNVSKRY--------GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDE 70 (178)
T ss_pred CEEEEEEEEE--------CCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchh
Confidence 4689999998 24579999999999999999999999999999999999643 468999999988642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..++.++|++|++.+++.+|++||+.+. ||||||||
T Consensus 71 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr 108 (178)
T cd03229 71 LPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQR 108 (178)
T ss_pred HHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHH
Confidence 3467899999999999889999998642 99999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
++|||||+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.||++++|++|+
T Consensus 109 ~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 109 VALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999887 899999999965 4667899999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=326.26 Aligned_cols=193 Identities=26% Similarity=0.391 Sum_probs=165.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++||+++| +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|+++|+++.. .
T Consensus 2 l~~~~l~~~~--------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 71 (200)
T PRK13540 2 LDVIELDFDY--------HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIKKDLCT 71 (200)
T ss_pred EEEEEEEEEe--------CCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccccCHHH
Confidence 7899999998 34579999999999999999999999999999999999643 568999999998742 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
++++++|++|++.+++.+||+||+.+..... . .+..+.++++.+++.+..+.. +..||||||||++|
T Consensus 72 ~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~------~--~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rv~l 138 (200)
T PRK13540 72 YQKQLCFVGHRSGINPYLTLRENCLYDIHFS------P--GAVGITELCRLFSLEHLIDYP-----CGLLSSGQKRQVAL 138 (200)
T ss_pred HHhheEEeccccccCcCCCHHHHHHHHHhcC------c--chHHHHHHHHHcCCchhhhCC-----hhhcCHHHHHHHHH
Confidence 5678999999999988899999999864211 1 124678899999997655543 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++.. ...+|..+
T Consensus 139 aral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~ 197 (200)
T PRK13540 139 LRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE 197 (200)
T ss_pred HHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence 999999999999999999999999999999999987779999999999654 46677654
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=357.87 Aligned_cols=216 Identities=26% Similarity=0.442 Sum_probs=192.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..++++|++++| +..++|+||||++++||++||+|.||||||||+|+|+|.. . +++|+|++||++..
T Consensus 7 ~ll~~~~i~K~F--------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~-p~~G~I~~~G~~~~~~s 76 (500)
T COG1129 7 PLLELRGISKSF--------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-P-PDSGEILIDGKPVAFSS 76 (500)
T ss_pred ceeeeecceEEc--------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-c-CCCceEEECCEEccCCC
Confidence 369999999998 5678999999999999999999999999999999999954 3 56999999999874
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC-CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL-PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
+....-|+.|+|+..|+|+|||.|||.++...+. ..-++.....+++.++|+.+|+....++.+ .+||+|||
T Consensus 77 p~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~Lsiaqr 151 (500)
T COG1129 77 PRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQR 151 (500)
T ss_pred HHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHH
Confidence 2345679999999999999999999998865443 123567778888999999999964466655 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|-|+|||||..+++||||||||++|+......+.+.++++.++|.+||+|||++. +++++||||.||.||+.+..++
T Consensus 152 Q~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 152 QMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999999999999999999999965 6999999999999999998887
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=333.87 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=182.5
Q ss_pred eeEEEEeEEEEEeecc------------ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccE
Q 006571 148 IYLKFTDVTYKVILKG------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS 215 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~ 215 (640)
..++++||++.|.... +.....+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceE
Confidence 4689999988886421 011234679999999999999999999999999999999999653 56899
Q ss_pred EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 216 ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 216 I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
|.++|. +++++|++.+++.+|+.||+.+..... ....++..+.+.++++.++|.+..+.. +..
T Consensus 81 I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~ 143 (264)
T PRK13546 81 VDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKK 143 (264)
T ss_pred EEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----ccc
Confidence 999985 467788887888899999998765432 123444455677888888987766653 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
||||||||++||+||+.+|++|||||||+|||+.++..+++.|.++++.|+|||+++|++. .+.+.||+|++|++|+++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~ 222 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLK 222 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999877999999999965 467889999999999999
Q ss_pred EecChHHHHH
Q 006571 376 YFGKASEAMA 385 (640)
Q Consensus 376 ~~G~~~~~~~ 385 (640)
+.|+++++.+
T Consensus 223 ~~g~~~~~~~ 232 (264)
T PRK13546 223 DYGELDDVLP 232 (264)
T ss_pred EeCCHHHHHH
Confidence 9999988765
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=335.10 Aligned_cols=211 Identities=32% Similarity=0.520 Sum_probs=169.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++|.. +..+++|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 10 ~~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~ 82 (226)
T cd03248 10 GIVKFQNVTFAYPT-----RPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ--PQGGQVLLDGKPISQYE 82 (226)
T ss_pred ceEEEEEEEEEeCC-----CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCCchHHcC
Confidence 46999999999831 112469999999999999999999999999999999999653 568999999987642
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc--CCCccccccccCccCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++.++|++|++.+++ .||+||+.++.................++++++.+ |+.+..+. .+..||||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgG~~ 156 (226)
T cd03248 83 HKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE-----KGSQLSGGQK 156 (226)
T ss_pred HHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhc-----CCCcCCHHHH
Confidence 34577999999998886 59999998754211000000111122356778877 66554443 3578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++.. + ..||+|++|++|++
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~-~~~d~i~~l~~g~i 226 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-V-ERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-H-HhCCEEEEecCCcC
Confidence 999999999999999999999999999999999999999875 6899999999764 5 45999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=338.71 Aligned_cols=217 Identities=23% Similarity=0.360 Sum_probs=172.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++|. ..++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~~~------~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~ 89 (257)
T cd03288 18 GEIKIHDLCVRYE------NNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD--IFDGKIVIDGIDISKLP 89 (257)
T ss_pred ceEEEEEEEEEeC------CCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC--CCCCeEEECCEEhhhCC
Confidence 3699999999982 122579999999999999999999999999999999999653 568999999998743
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.+++.++||+|++.+++ .|++||+.... ........ ..+.+.++.+ +...++.++ ..+..|||
T Consensus 90 ~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~--~~~l~~~~~-~~~~~LS~ 159 (257)
T cd03288 90 LHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSL--PGGLDAVVT-EGGENFSV 159 (257)
T ss_pred HHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhc--ccccCcEec-cCCCcCCH
Confidence 45678999999999887 49999986421 01111111 1123333333 112233332 24578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++. ++.|||+++|++.. +. .||+|++|++|++++.|
T Consensus 160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~-~~dri~~l~~G~i~~~g 236 (257)
T cd03288 160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-IL-DADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HH-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 48999999999864 44 49999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++.+
T Consensus 237 ~~~~~~~ 243 (257)
T cd03288 237 TPENLLA 243 (257)
T ss_pred CHHHHHh
Confidence 9988754
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=328.83 Aligned_cols=208 Identities=25% Similarity=0.409 Sum_probs=169.5
Q ss_pred EEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC--CE--eCC
Q 006571 150 LKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DH--PYS 224 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~--G~--~~~ 224 (640)
|+++||+++|..+. +.+ .+.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++ |. ++.
T Consensus 2 l~~~~l~~~~~~~~--~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~~~g~~~~~~ 77 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ--QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL--PDSGRILVRHEGAWVDLA 77 (224)
T ss_pred EEEEeeEEEeeccc--CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEEecCCCccchh
Confidence 78999999984210 011 2479999999999999999999999999999999999643 468999998 42 432
Q ss_pred h-------hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCc
Q 006571 225 K-------SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRG 295 (640)
Q Consensus 225 ~-------~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~ 295 (640)
. .. ++.++|++|++.+++.+||.||+.+..... ........+++.++++.+||.+. .+. .+.+
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 149 (224)
T TIGR02324 78 QASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHL-----PPAT 149 (224)
T ss_pred hcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhC-----Cccc
Confidence 1 12 357999999999999999999999865322 12334445678889999999753 243 3578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+..+||+++.+.
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999999999999999999999999877999999999954 4567899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=307.30 Aligned_cols=216 Identities=31% Similarity=0.516 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC--C--
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S-- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--~-- 224 (640)
.|+++++++.| +...+|.||+++.+.||.+.++||||||||||++.|. .+. .+.+|+..+.|... +
T Consensus 2 sirv~~in~~y--------g~~q~lfdi~l~~~~getlvllgpsgagkssllr~ln-lle-~p~sg~l~ia~~~fd~s~~ 71 (242)
T COG4161 2 SIQLNGINCFY--------GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN-LLE-MPRSGTLNIAGNHFDFSKT 71 (242)
T ss_pred ceEEccccccc--------ccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHH-HHh-CCCCCeEEecccccccccC
Confidence 47899999988 5668999999999999999999999999999999998 444 35689999977643 2
Q ss_pred ------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 ------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 ------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
..+|+.+|+|+|+..++|++||.|||.-+.. +. ..+++++...++.++++.+.|.+.+|. ++-.|||
T Consensus 72 ~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~-kv-~gl~~~qa~~~a~ellkrlrl~~~adr-----~plhlsg 144 (242)
T COG4161 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPC-RV-LGLSKDQALARAEKLLKRLRLKPYADR-----YPLHLSG 144 (242)
T ss_pred ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhH-HH-hCCCHHHHHHHHHHHHHHhcccccccc-----Cceeccc
Confidence 1478999999999999999999999976432 21 246788888899999999999988875 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||+|||+|||||+.+|++|++||||++|||+-..++++++++++..|.|-+++||... ...+.+.+|+.|++|+|++.|
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeEeec
Confidence 9999999999999999999999999999999999999999999999999999999965 356779999999999999999
Q ss_pred ChHH
Q 006571 379 KASE 382 (640)
Q Consensus 379 ~~~~ 382 (640)
+++-
T Consensus 224 ~a~~ 227 (242)
T COG4161 224 DASC 227 (242)
T ss_pred chhh
Confidence 8753
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=320.30 Aligned_cols=175 Identities=33% Similarity=0.597 Sum_probs=153.9
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
|+++|++++|.. .++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 i~~~~~~~~~~~------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (178)
T cd03247 1 LSINNVSFSYPE------QEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK--PQQGEITLDGVPVSDLEKA 72 (178)
T ss_pred CEEEEEEEEeCC------CCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCEEHHHHHHH
Confidence 478999999821 12469999999999999999999999999999999999643 568999999997642 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++|++.+++ .|++||+ +..||||||||++|
T Consensus 73 ~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qrv~l 109 (178)
T cd03247 73 LSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQRLAL 109 (178)
T ss_pred HHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHHHHH
Confidence 5678999999998886 6999987 24799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||+.+|++|||||||+|||+.++..+++.|+++. ++.|||+++|++.. + ..||++++|++|++++.|
T Consensus 110 aral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~-~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-I-EHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 48999999999764 4 569999999999998765
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=318.85 Aligned_cols=169 Identities=34% Similarity=0.622 Sum_probs=150.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
++++|++++|. ...+++++|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 1 i~~~~l~~~~~------~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (173)
T cd03246 1 LEVENVSFRYP------GAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR--PTSGRVRLDGADISQWDPN 72 (173)
T ss_pred CEEEEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC--CCCCeEEECCEEcccCCHH
Confidence 47899999882 123569999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.+++.++|++|++.+++. ||+||+ ||||||||++
T Consensus 73 ~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~qrv~ 106 (173)
T cd03246 73 ELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQRLG 106 (173)
T ss_pred HHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHHHHH
Confidence 346789999999988874 999987 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+ +.||++++|++|++
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999877999999999975 34 68999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=369.24 Aligned_cols=215 Identities=23% Similarity=0.426 Sum_probs=180.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|+++.| +.+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 264 ~~l~~~~l~~~~----------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~ 331 (510)
T PRK09700 264 TVFEVRNVTSRD----------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRS 331 (510)
T ss_pred cEEEEeCccccC----------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCC
Confidence 369999999754 138999999999999999999999999999999999653 468999999988642
Q ss_pred ---hccCcEEEEccC---CCCCCCCCHHHHHHHHHhcc---CCC--C-ccHHHHHHHHHHHHHHcCCC-ccccccccCcc
Q 006571 226 ---SLKSKIGFVTQD---DVLFPHLTVKETLTYAALLR---LPN--T-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSF 292 (640)
Q Consensus 226 ---~~~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~ 292 (640)
..++.+|||+|+ +.+++.+||.||+.++...+ ... . ......+++++++++.++|. +..++.
T Consensus 332 ~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 406 (510)
T PRK09700 332 PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN----- 406 (510)
T ss_pred HHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCc-----
Confidence 235679999998 46888999999998753211 000 0 11223345678999999996 556654
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
+..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||+. .+.+.||++++|++|
T Consensus 407 ~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~G 485 (510)
T PRK09700 407 ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCEG 485 (510)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999878999999999965 577899999999999
Q ss_pred eEEEecCh
Q 006571 373 SLLYFGKA 380 (640)
Q Consensus 373 ~iv~~G~~ 380 (640)
++++.++.
T Consensus 486 ~i~~~~~~ 493 (510)
T PRK09700 486 RLTQILTN 493 (510)
T ss_pred EEEEEecC
Confidence 99988865
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=368.11 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=178.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~--p~~G~i~~~~~~~~~~~~ 72 (490)
T PRK10938 3 SLQISQGTFRL--------SDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP--LLSGERQSQFSHITRLSF 72 (490)
T ss_pred eEEEEeEEEEc--------CCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCceEEECCcccccCCH
Confidence 58999999998 24569999999999999999999999999999999999653 568999999976532
Q ss_pred -hccCcEEEEccCCCC--C-C-----CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 -SLKSKIGFVTQDDVL--F-P-----HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l--~-~-----~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
..++.++|++|++.+ + + .+||+|++.+. ....++++++++.+||.+..+.. +..|
T Consensus 73 ~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~-----~~~L 136 (490)
T PRK10938 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRR-----FKYL 136 (490)
T ss_pred HHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCC-----cccC
Confidence 234669999998643 1 1 46888887532 12245678899999998766654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||+++|++. .+.+.||+|++|++|++++
T Consensus 137 SgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~i~~ 215 (490)
T PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCTLAE 215 (490)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999877999999999975 4778899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 216 ~~~~~~~~ 223 (490)
T PRK10938 216 TGEREEIL 223 (490)
T ss_pred eCCHHHHh
Confidence 99988764
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=339.10 Aligned_cols=230 Identities=26% Similarity=0.486 Sum_probs=201.1
Q ss_pred CCeeEEEEeEEEEEeecccc-c--cccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 146 LPIYLKFTDVTYKVILKGMT-S--SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~-~--~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
.++.++.+||...|+.++.- + .....++++||+++++||.++|||.||||||||-.+|.+.+ +.+|+|.|+|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~---~s~G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI---PSQGEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc---CcCceEEECCcc
Confidence 45679999999999876421 1 12356999999999999999999999999999999999644 236999999999
Q ss_pred CCh-------hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 223 YSK-------SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 223 ~~~-------~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+.. .+|+++-.||||| .|-|.+||.+-|.-+.....| ..+++++++++.+.++++||+... -++++
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 852 3688999999998 589999999999998876544 578899999999999999997522 24688
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
+++|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+ .|.+-++++||+. .+..+||+|+||.+|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 99999999999999999999999999999999999999999999999975 4899999999975 477899999999999
Q ss_pred eEEEecChHHHH
Q 006571 373 SLLYFGKASEAM 384 (640)
Q Consensus 373 ~iv~~G~~~~~~ 384 (640)
+||+.|+.++++
T Consensus 504 kiVE~G~~~~if 515 (534)
T COG4172 504 KIVEQGPTEAVF 515 (534)
T ss_pred EEeeeCCHHHHh
Confidence 999999999885
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=324.95 Aligned_cols=198 Identities=26% Similarity=0.415 Sum_probs=167.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (640)
.|+++||++.| +++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..
T Consensus 2 ~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 71 (207)
T PRK13539 2 MLEGEDLACVR--------GGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDV 71 (207)
T ss_pred EEEEEeEEEEE--------CCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhh
Confidence 48999999998 34569999999999999999999999999999999999543 468999999988642 25
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++|++.+++.+||+||+.+..... . . ..+++.++++.+||.+..+. .++.||||||||++||
T Consensus 72 ~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-~--~----~~~~~~~~l~~~~l~~~~~~-----~~~~LS~G~~qrl~la 139 (207)
T PRK13539 72 AEACHYLGHRNAMKPALTVAENLEFWAAFL-G--G----EELDIAAALEAVGLAPLAHL-----PFGYLSAGQKRRVALA 139 (207)
T ss_pred HhhcEEecCCCcCCCCCcHHHHHHHHHHhc-C--C----cHHHHHHHHHHcCCHHHHcC-----ChhhcCHHHHHHHHHH
Confidence 678999999998888899999998765332 1 1 12347889999999765554 3468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
|+|+.+|++|||||||+|||+.+...+.+.|++++++|+|||++||++.. +. . |+++-+..
T Consensus 140 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~-~-~~~~~~~~ 200 (207)
T PRK13539 140 RLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LP-G-ARELDLGP 200 (207)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hc-c-CcEEeecC
Confidence 99999999999999999999999999999999988789999999999753 43 3 88887744
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=324.49 Aligned_cols=198 Identities=21% Similarity=0.395 Sum_probs=164.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++..
T Consensus 6 ~l~~~~l~~~~~~------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~ 77 (207)
T cd03369 6 EIEVENLSVRYAP------DLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE--AEEGKIEIDGIDISTIPL 77 (207)
T ss_pred eEEEEEEEEEeCC------CCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEhHHCCH
Confidence 5899999999821 12479999999999999999999999999999999999643 568999999998642
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.|+||+|++.+++ .||+||+.+.. .... +.+.+.++ + + ..+..||||||||+
T Consensus 78 ~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~-----~~~~~LS~G~~qrv 134 (207)
T cd03369 78 EDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----S-----EGGLNLSQGQRQLL 134 (207)
T ss_pred HHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----c-----CCCCcCCHHHHHHH
Confidence 34678999999998887 49999997531 1111 12333333 2 1 23578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
+|||+|+.+|++|||||||+|||+.++..+.+.|+++. +|+|+|++||++.. +. .||++++|++|+++..|++
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~-~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-II-DYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999985 48999999999764 44 4999999999999988863
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=319.25 Aligned_cols=171 Identities=27% Similarity=0.518 Sum_probs=153.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++| +|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~ 69 (182)
T cd03215 4 VLEVRGLSVKG------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSP 69 (182)
T ss_pred EEEEeccEEEe------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccCH
Confidence 58999999874 8999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.++|++|++ .+++.+|++||+.+... |||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS~G~ 109 (182)
T cd03215 70 RDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LSGGN 109 (182)
T ss_pred HHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cCHHH
Confidence 2467899999985 57888999999986420 99999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|+|+++|++. ++.++||++++|++|++
T Consensus 110 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 110 QQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999877899999999965 57788999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=367.20 Aligned_cols=221 Identities=21% Similarity=0.373 Sum_probs=183.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|.. .+++.+|+|+||+|++||+++|+||||||||||+|+|+|.+. |+.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~~~~~-----~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~-p~~~G~i~~~g~~~~~~~~ 330 (500)
T TIGR02633 257 ILEARNLTCWDVI-----NPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP-GKFEGNVFINGKPVDIRNP 330 (500)
T ss_pred eEEEeCCcccccc-----cccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC-CCCCeEEEECCEECCCCCH
Confidence 6999999987621 123569999999999999999999999999999999999653 3358999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCC--CCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (640)
..+++++||+|++ .+++.+||+||+.++...... ........++++.++++.++|.+ ..++. +..||
T Consensus 331 ~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 405 (500)
T TIGR02633 331 AQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-----IGRLS 405 (500)
T ss_pred HHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCc-----cccCC
Confidence 3467899999995 588899999999876421110 01223344567889999999963 44543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|+++..
T Consensus 406 gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G~i~~~ 484 (500)
T TIGR02633 406 GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEGKLKGD 484 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999888999999999975 57789999999999999987
Q ss_pred cChH
Q 006571 378 GKAS 381 (640)
Q Consensus 378 G~~~ 381 (640)
++.+
T Consensus 485 ~~~~ 488 (500)
T TIGR02633 485 FVNH 488 (500)
T ss_pred Eccc
Confidence 7654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=379.25 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=169.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|+|+.+. ..++++|+|+|+++++||++||+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 336 ~~i~~~~v~f~y~~~~---~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-~~-p~~G~i~~~g~~i~~~~ 410 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE---GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-YI-PQEGEILLDGAAVSADS 410 (555)
T ss_pred ceEEEEEEEEEeCCCC---CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-CC-CCCcEEEECCEECCCCC
Confidence 4699999999994210 0124699999999999999999999999999999999985 43 468999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc-cCccCCcCCHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI-GGSFVRGVSGGERK 302 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v-g~~~~~~LSGGqrq 302 (640)
.+++.++||+|++.+|++ |+++|+. + ...++++.++++.+++.+..+... |-.....|||||||
T Consensus 411 ~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-----~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~q 477 (555)
T TIGR01194 411 RDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-----HASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 (555)
T ss_pred HHHHHhhCcEEccChhhhhh-hhhcccc-------c-----chhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHH
Confidence 567889999999999975 8998841 1 122345677888888765433221 11113579999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ-DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~-~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|++|||||+++|+||||||||++||+.++..+.+.+. .+...|+|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 478 RlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998664 45556899999999975 3578999999999999764
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=318.18 Aligned_cols=177 Identities=32% Similarity=0.572 Sum_probs=151.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh------hccCcEEEEccCC--CC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------SLKSKIGFVTQDD--VL 240 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~------~~~~~i~yV~Q~~--~l 240 (640)
++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++.. .+++.++|++|++ .+
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 4579999999999999999999999999999999999653 468999999998731 3456799999997 35
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Q 006571 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLD 320 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLD 320 (640)
+ ..||+||+.+..... ..+..+..++++++++.+||.+..++. +..||||||||++|||||+.+|++||||
T Consensus 82 ~-~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllD 152 (190)
T TIGR01166 82 F-AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERP-----THCLSGGEKKRVAIAGAVAMRPDVLLLD 152 (190)
T ss_pred c-cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 5 469999999875432 123444556788999999998766653 4689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
|||+|||+.++..+.+.|++++++|+|||++||++.
T Consensus 153 EPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 999999999999999999999877999999999964
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=352.62 Aligned_cols=214 Identities=25% Similarity=0.349 Sum_probs=179.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+++++||++.|.. ...+++|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~-----~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----- 88 (549)
T PRK13545 21 FDKLKDLFFRSKD-----GEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----- 88 (549)
T ss_pred eeEEEEEEEecCC-----CccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee-----
Confidence 6889999888721 123579999999999999999999999999999999999653 5689999999752
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
++.+.+.+++.+||+||+.+..... ..+.++..+++.++++.++|.+..+.. ++.||||||||++|||
T Consensus 89 ----~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~-----~~~LSGGQrQRVaLAr 156 (549)
T PRK13545 89 ----LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQP-----VKTYSSGMKSRLGFAI 156 (549)
T ss_pred ----eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----cccCCHHHHHHHHHHH
Confidence 2223445677789999998854322 123444556678899999998766654 4689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++..-|
T Consensus 157 AL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~ 234 (549)
T PRK13545 157 SVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY 234 (549)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence 999999999999999999999999999999999877999999999975 577889999999999999999998886544
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=361.57 Aligned_cols=214 Identities=23% Similarity=0.416 Sum_probs=179.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~l~~-------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~ 321 (501)
T PRK10762 257 RLKVDNLSG-------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSP 321 (501)
T ss_pred EEEEeCccc-------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCH
Confidence 588888863 27999999999999999999999999999999999653 468999999988742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCC---CCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP---NTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (640)
..++.+|||+|++ .+++.+||.||+.++...... ......+.+++++++++.++|. +..++. +..|
T Consensus 322 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 396 (501)
T PRK10762 322 QDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQA-----IGLL 396 (501)
T ss_pred HHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCc-----hhhC
Confidence 2456799999996 578889999999875321100 0122334456788999999995 455543 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+|++|++|+++.
T Consensus 397 SgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~ 475 (501)
T PRK10762 397 SGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISG 475 (501)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999878999999999975 5778999999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++++
T Consensus 476 ~~~~~~~ 482 (501)
T PRK10762 476 EFTREQA 482 (501)
T ss_pred EeccccC
Confidence 9987764
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=324.80 Aligned_cols=197 Identities=28% Similarity=0.432 Sum_probs=163.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCC--CCCHHHHHHHHHh
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP--HLTVKETLTYAAL 255 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~--~lTV~Enl~~~~~ 255 (640)
|+|++||+++|+||||||||||+++|+|... +.+|+|.+||+++.. .+++++|++|++.+++ .+|+.||+.++..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 5789999999999999999999999999653 468999999998643 4577999999987642 4799999987532
Q ss_pred ccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 006571 256 LRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334 (640)
Q Consensus 256 ~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i 334 (640)
.... .........+++.++++.+++.+..++. +.+||||||||++|||+|+.+|++|||||||+|||+.++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l 152 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRP-----VGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELL 152 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1100 0011223345688899999998766554 468999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 335 ~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
.+.|++++++|+|||++||++. ++.+.||+++++ +|++++.|+++++.
T Consensus 153 ~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 153 TELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 9999999877999999999975 477899999999 89999999988764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=316.44 Aligned_cols=175 Identities=33% Similarity=0.584 Sum_probs=150.2
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----h
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----S 226 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~ 226 (640)
+++||+++| +++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. .
T Consensus 1 ~~~~l~~~~--------~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~~ 70 (180)
T cd03214 1 EVENLSVGY--------GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK--PSSGEILLDGKDLASLSPKE 70 (180)
T ss_pred CeeEEEEEE--------CCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCcCCHHH
Confidence 478999988 23569999999999999999999999999999999999643 568999999998742 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.++|++| +++.+||.+..++ .+..||||||||++|
T Consensus 71 ~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~-----~~~~LS~G~~qrl~l 108 (180)
T cd03214 71 LARKIAYVPQ-------------------------------------ALELLGLAHLADR-----PFNELSGGERQRVLL 108 (180)
T ss_pred HHHHHhHHHH-------------------------------------HHHHcCCHhHhcC-----CcccCCHHHHHHHHH
Confidence 3456888888 4555666654443 346899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||+|+.+|+++||||||+|||+.++..+.+.|++++++ ++|+|+++|++. .+.++||++++|++|++++.|
T Consensus 109 aral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 109 ARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999776 899999999976 466889999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=362.08 Aligned_cols=215 Identities=20% Similarity=0.371 Sum_probs=179.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|... +.+|+|.++|+++..
T Consensus 257 ~l~~~~~~~~------------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~ 322 (501)
T PRK11288 257 RLRLDGLKGP------------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSP 322 (501)
T ss_pred EEEEeccccC------------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCH
Confidence 5888888731 48999999999999999999999999999999999653 568999999998642
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccC-CCC--ccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRL-PNT--LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~L 296 (640)
..++.++|++|++ .+++.+||.||+.++..... +.. ......++.++++++.++|. +..++. +..|
T Consensus 323 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~L 397 (501)
T PRK11288 323 RDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQL-----IMNL 397 (501)
T ss_pred HHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCc-----cccC
Confidence 2356799999996 48888999999987532110 001 12233345688899999994 556654 4689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||+|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|++|++++
T Consensus 398 SgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~ 476 (501)
T PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAG 476 (501)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999999888999999999965 5778999999999999999
Q ss_pred ecChHHH
Q 006571 377 FGKASEA 383 (640)
Q Consensus 377 ~G~~~~~ 383 (640)
.|+++++
T Consensus 477 ~~~~~~~ 483 (501)
T PRK11288 477 ELAREQA 483 (501)
T ss_pred EEccccC
Confidence 9987653
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=318.66 Aligned_cols=194 Identities=27% Similarity=0.439 Sum_probs=152.7
Q ss_pred EEEEeEEEEEeeccccccc--cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 150 LKFTDVTYKVILKGMTSSE--EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~--~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
|+++||+++|.. .. .+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 1 l~~~~l~~~~~~-----~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~--~~~G~i~~~g------- 66 (204)
T cd03250 1 ISVEDASFTWDS-----GEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE--KLSGSVSVPG------- 66 (204)
T ss_pred CEEeEEEEecCC-----CCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCCeEEEcC-------
Confidence 478999999821 11 1369999999999999999999999999999999999543 5689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (640)
+|+|++|++.+++ .|++||+.+... ...+. ..+.++.+++.+ ..++.+. ..+..|||||
T Consensus 67 --~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G~ 132 (204)
T cd03250 67 --SIAYVSQEPWIQN-GTIRENILFGKP------FDEER----YEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGGQ 132 (204)
T ss_pred --EEEEEecCchhcc-CcHHHHhccCCC------cCHHH----HHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHHH
Confidence 5999999999985 699999987532 11111 122222222211 2223332 3457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|||++|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||+++|++.. +.. ||++++|++|+
T Consensus 133 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~-~~~-~d~i~~l~~G~ 204 (204)
T cd03250 133 KQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL-LPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHH-Hhh-CCEEEEEeCCC
Confidence 999999999999999999999999999999999998 466666668999999999753 444 99999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=341.83 Aligned_cols=215 Identities=27% Similarity=0.392 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
.++++++++.| +...+++||||+|++||+.||+|.||||||||+++|.|. +. |++|+|.+||+++.
T Consensus 4 ~l~~~~itK~f--------~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-~~-P~~GeI~v~G~~v~~~sP 73 (501)
T COG3845 4 ALEMRGITKRF--------PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-YQ-PDSGEIRVDGKEVRIKSP 73 (501)
T ss_pred eEEEeccEEEc--------CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-cc-CCcceEEECCEEeccCCH
Confidence 58999999998 467899999999999999999999999999999999995 44 46999999999874
Q ss_pred -hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 225 -~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
+..+..||+|+|++.|+|++||.|||.++.........+....+++++++.+.+||+-..|..+ ..||-|||||
T Consensus 74 ~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V-----~dLsVG~qQR 148 (501)
T COG3845 74 RDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKV-----ADLSVGEQQR 148 (501)
T ss_pred HHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCcccee-----ecCCcchhHH
Confidence 2457789999999999999999999999865322223566778888999999999986666554 6899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|.|-++|.++|++|||||||+-|-|....++++.|++++++|+|||++||.+. ++.+.|||+.||.+|+++..-+
T Consensus 149 VEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 149 VEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999999999999999999999975 6889999999999999876655
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=362.94 Aligned_cols=203 Identities=23% Similarity=0.311 Sum_probs=170.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|+|+ +++++|+|+|++|++||.+||+||||||||||+++|+|. ++ +.+|+|.+||.++.+
T Consensus 321 ~~i~~~~v~f~y~-------~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-~~-~~~G~i~~~g~~~~~~~ 391 (547)
T PRK10522 321 QTLELRNVTFAYQ-------DNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVTAEQ 391 (547)
T ss_pred ceEEEEEEEEEeC-------CCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEECCCCC
Confidence 3699999999993 234699999999999999999999999999999999985 43 468999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc--cCCcCCHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS--FVRGVSGGER 301 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~--~~~~LSGGqr 301 (640)
.++++++||+|++.+|+. |++|| + + . ..++.++++++.+++.+..+. ++. ....||||||
T Consensus 392 ~~~~~~~i~~v~q~~~lf~~-ti~~n---~-----~-~----~~~~~~~~~~~~~~l~~~~~~--~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 392 PEDYRKLFSAVFTDFHLFDQ-LLGPE---G-----K-P----ANPALVEKWLERLKMAHKLEL--EDGRISNLKLSKGQK 455 (547)
T ss_pred HHHHhhheEEEecChhHHHH-hhccc---c-----C-c----hHHHHHHHHHHHcCCchhhhc--cccCCCCCCCCHHHH
Confidence 568899999999999975 88887 1 0 1 223457788888888754332 221 1357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||++|||||+++|++|+||||||+||+.++..+.+.|.+..+ .++|+|+++|+++ ..+.||+|++|++|++++.
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987653 5899999999975 4678999999999999876
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=325.25 Aligned_cols=195 Identities=30% Similarity=0.497 Sum_probs=172.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hccCcEEEEccCCCCCCCCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yV~Q~~~l~~~lT 245 (640)
=+++|..+.-.++||-|+||||||||+|+|+|... ++.|.|.+||+.+.+ ..+|+|||||||-.|||++|
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r--PdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR--PDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC--ccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 35788887767999999999999999999999664 468999999987632 24789999999999999999
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
|+.||.|+.... ..+..+++++.+|+++..+. ++..|||||||||+|+|||++.|++|+||||.++
T Consensus 93 VrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R-----~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 93 VRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDR-----YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred Eecchhhhhccc---------chHhHHHHHHHhCcHHHHhh-----CCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 999999986421 34457788999999998875 5678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||-.-..+++-.|.++.++ ...|+.+||.+ .++.+++|+|++|++|++...|+.+++..
T Consensus 159 LD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 159 LDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred cccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999999876 78999999996 46899999999999999999999999863
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=358.22 Aligned_cols=214 Identities=22% Similarity=0.310 Sum_probs=177.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++. .+|+||||+|++|++++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 268 ~l~~~~l~~-------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~ 332 (510)
T PRK15439 268 VLTVEDLTG-------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP--ARGGRIMLNGKEINALST 332 (510)
T ss_pred eEEEeCCCC-------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCH
Confidence 688888872 15999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHH
Q 006571 226 --SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 --~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGG 299 (640)
..++.|+||+|++ .+++.+|+.||+........+........++.++++++.+||+ +..++. +..||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 407 (510)
T PRK15439 333 AQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQA-----ARTLSGG 407 (510)
T ss_pred HHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCc-----cccCCcH
Confidence 1346799999984 4888899999996431111110011222345688999999996 556654 4689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|+++..|+
T Consensus 408 ~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~ 486 (510)
T PRK15439 408 NQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALT 486 (510)
T ss_pred HHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999999888999999999975 5778999999999999999998
Q ss_pred hHHH
Q 006571 380 ASEA 383 (640)
Q Consensus 380 ~~~~ 383 (640)
++++
T Consensus 487 ~~~~ 490 (510)
T PRK15439 487 GAAI 490 (510)
T ss_pred cccC
Confidence 7654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=407.39 Aligned_cols=336 Identities=18% Similarity=0.183 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhH
Q 006571 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (640)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (640)
++.++.-.+.++...|.+.+.++||.++.+....+++.+...+......+.....+.......... +-+.-++.|+.+
T Consensus 469 ~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~fg~~~ 546 (1495)
T PLN03232 469 KEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP--VVVTLVSFGVFV 546 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333455566777888999999999999998877766664332222222211110000000000000 011113455555
Q ss_pred hhhhhhhhhhhhccccC----CCCcc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeE
Q 006571 92 SRASSASLGLSFSFTGF----TMPPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDV 155 (640)
Q Consensus 92 ~~~~~~~~g~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v 155 (640)
+..+..+.|.++++..+ ..|.. ..+..+.....+.++.... ... ........++++|+
T Consensus 547 v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~-----~~~-~~~~~~~~I~~~~v 620 (1495)
T PLN03232 547 LLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILA-----QNP-PLQPGAPAISIKNG 620 (1495)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-----ccC-CcCCCCCcEEEEee
Confidence 55555566666655321 11111 1111111111111111000 000 00011235999999
Q ss_pred EEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEc
Q 006571 156 TYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVT 235 (640)
Q Consensus 156 s~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~ 235 (640)
+|+|+. ..++++|+|+|++|++||.++|+||||||||||+++|.|... +.+|.+. .+++.|+||+
T Consensus 621 sF~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~G~i~--------~~~~~Iayv~ 685 (1495)
T PLN03232 621 YFSWDS-----KTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS--HAETSSV--------VIRGSVAYVP 685 (1495)
T ss_pred EEEcCC-----CCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc--ccCCCEE--------EecCcEEEEc
Confidence 999842 124679999999999999999999999999999999998543 3466552 3567899999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
|++.+|+. ||+|||.|+.. .++++ .+++++.. .|+++.+|.+|++. ..||||||||++|||
T Consensus 686 Q~p~Lf~g-TIreNI~fg~~------~~~e~----~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G-~~LSGGQkQRIaLAR 753 (1495)
T PLN03232 686 QVSWIFNA-TVRENILFGSD------FESER----YWRAIDVTALQHDLDLLPGRDLTEIGERG-VNISGGQKQRVSMAR 753 (1495)
T ss_pred Cccccccc-cHHHHhhcCCc------cCHHH----HHHHHHHhCCHHHHHhCCCCCCceecCCC-cccCHHHHHHHHHHH
Confidence 99999975 99999999731 22222 22222222 45778899999764 469999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~-L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|++++|+|+|||||||+||+.++.++++. ++.+. +++|+|++||+++ ....||+|++|++|++++.|+++++.+
T Consensus 754 Aly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l-~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 754 AVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL-KGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh-cCCEEEEEECChh--hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 99999999999999999999999988765 45443 5899999999986 357899999999999999999999864
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=312.33 Aligned_cols=191 Identities=21% Similarity=0.330 Sum_probs=159.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|++++| +++.+++ +||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++....++
T Consensus 2 l~~~~l~~~~--------~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~ 70 (195)
T PRK13541 2 LSLHQLQFNI--------EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ--PSSGNIYYKNCNINNIAKP 70 (195)
T ss_pred eEEEEeeEEE--------CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCcccChhhhh
Confidence 7899999998 2344555 999999999999999999999999999999643 5689999999987543345
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.+++.+||+||+.+..... . ..+++.++++.+++.+..++. ++.||||||||++||||
T Consensus 71 ~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~~rl~la~a 137 (195)
T PRK13541 71 YCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEK-----CYSLSSGMQKIVAIARL 137 (195)
T ss_pred hEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccC-----hhhCCHHHHHHHHHHHH
Confidence 6999999988878899999998864321 1 134567788999997665543 46899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i 366 (640)
|+.+|++++|||||+|||+.++..+.+.|++..++|+|||+++|++.. ...+|-|
T Consensus 138 l~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~ 192 (195)
T PRK13541 138 IACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL 192 (195)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence 999999999999999999999999999998777778999999999764 3556654
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=308.27 Aligned_cols=167 Identities=37% Similarity=0.638 Sum_probs=147.2
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++|++++|.. ..+.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~ 72 (171)
T cd03228 1 IEFKNVSFSYPG------RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLRDLDLE 72 (171)
T ss_pred CEEEEEEEEcCC------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCCEEEECCEEhhhcCHH
Confidence 468999998821 11369999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.++|++|++.+++ .|+.||+ ||||||||++
T Consensus 73 ~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~rl~ 106 (171)
T cd03228 73 SLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQRIA 106 (171)
T ss_pred HHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHHHHH
Confidence 34677999999998886 5998887 9999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||++.. +.. ||++++|++|+
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~~~~l~~g~ 171 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLST-IRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-HHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999864 7999999999764 555 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=318.16 Aligned_cols=200 Identities=26% Similarity=0.424 Sum_probs=158.4
Q ss_pred EEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----
Q 006571 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----- 225 (640)
Q Consensus 151 ~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----- 225 (640)
.+.|+.|.|+ +++++|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~ 72 (218)
T cd03290 2 QVTNGYFSWG-------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFEA 72 (218)
T ss_pred eeeeeEEecC-------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCcccccccccc
Confidence 4678888872 23579999999999999999999999999999999999653 468999999987632
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-------cccccCccCCc
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-------DTMIGGSFVRG 295 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~t~vg~~~~~~ 295 (640)
..++.++|++|++.+++ .|++||+.+... ... +...++++.++|.+.. ++.+ +..+..
T Consensus 73 ~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~ 140 (218)
T cd03290 73 TRSRNRYSVAYAAQKPWLLN-ATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEI-GERGIN 140 (218)
T ss_pred cchhhcceEEEEcCCCcccc-ccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCc-ccCCCc
Confidence 23467999999998884 699999987531 111 1123344445543321 2222 234678
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~--~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
||||||||++|||+|+.+|++|||||||+|||+.++..+++ .++.+.+.|.|+|++||++.. + ..||++++|++|+
T Consensus 141 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~~G~ 218 (218)
T cd03290 141 LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMKDGS 218 (218)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEecCCC
Confidence 99999999999999999999999999999999999999998 667666668999999999764 4 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=306.95 Aligned_cols=231 Identities=29% Similarity=0.401 Sum_probs=198.9
Q ss_pred eEEEEeEEEEEeecccccccc-ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKGMTSSEE-KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~-~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
+|+++||+.++ .+ +.||++||++|++||+.+||||||||||||.++|+|+-.-..++|+|.++|+++..
T Consensus 3 ~L~I~dLhv~v--------~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~ 74 (251)
T COG0396 3 MLEIKDLHVEV--------EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS 74 (251)
T ss_pred eeEEeeeEEEe--------cCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC
Confidence 68999999987 34 58999999999999999999999999999999999964222468999999999852
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqr 301 (640)
..|.-|...+|.|.=+|..|+.+.|..+...+....-...+..+.+++.++.+++++ ..+..+. .++|||||
T Consensus 75 ~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~GFSGGEk 150 (251)
T COG0396 75 PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EGFSGGEK 150 (251)
T ss_pred HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CCcCcchH
Confidence 356778999999999999999999998775533211113456677888999999976 4555443 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc--CEEEEEcCCeEEEecC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF--DKLILLGKGSLLYFGK 379 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~--D~i~vL~~G~iv~~G~ 379 (640)
||..|+..++.+|++.+||||-||||..+-+.|-+.+..+.+.|.+++++||.. .+..+. |+|.||.+|+|+..|.
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~vhvl~~GrIv~sG~ 228 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKVHVLYDGRIVKSGD 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999999999999999999999984 466666 9999999999999999
Q ss_pred hHHHHHHHHhcCCCC
Q 006571 380 ASEAMAYFSSIGCSP 394 (640)
Q Consensus 380 ~~~~~~~f~~~g~~~ 394 (640)
+ ++..+++.-||.|
T Consensus 229 ~-el~~~le~~gy~~ 242 (251)
T COG0396 229 P-ELAEELEEKGYDW 242 (251)
T ss_pred H-HHHHHHHHhchHH
Confidence 9 9999999999865
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=336.69 Aligned_cols=187 Identities=31% Similarity=0.524 Sum_probs=163.0
Q ss_pred EECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHH
Q 006571 188 LMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265 (640)
Q Consensus 188 IvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~ 265 (640)
|+||||||||||+++|+|... +.+|+|.++|+++.. ..++.++||+|++.+|+.+||+||+.|+...+ ..+..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQ--PDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHH
Confidence 689999999999999999653 568999999998743 24678999999999999999999999986432 23344
Q ss_pred HHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-
Q 006571 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA- 344 (640)
Q Consensus 266 ~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~- 344 (640)
+.+++++++++.++|.+..++. +..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRK-----PHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 5566788999999998766653 5789999999999999999999999999999999999999999999999765
Q ss_pred CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 345 g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+|||++||++. ++..+||+|++|++|+++..|+++++..
T Consensus 151 g~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~ 190 (325)
T TIGR01187 151 GITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE 190 (325)
T ss_pred CCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 899999999975 5778999999999999999999998753
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=303.17 Aligned_cols=157 Identities=31% Similarity=0.487 Sum_probs=141.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~--------~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~~~~~~ 70 (163)
T cd03216 1 LELRGITKRF--------GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK--PDSGEILVDGKEVSFASPR 70 (163)
T ss_pred CEEEEEEEEE--------CCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEECCcCCHH
Confidence 4789999998 24579999999999999999999999999999999999653 568999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++| ||||||||+
T Consensus 71 ~~~~~~i~~~~q-----------------------------------------------------------LS~G~~qrl 91 (163)
T cd03216 71 DARRAGIAMVYQ-----------------------------------------------------------LSVGERQMV 91 (163)
T ss_pred HHHhcCeEEEEe-----------------------------------------------------------cCHHHHHHH
Confidence 23567889888 999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
+|||||+.+|++|||||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.||++++|++|++++
T Consensus 92 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 92 EIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999877999999999965 4667899999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-38 Score=326.46 Aligned_cols=205 Identities=29% Similarity=0.439 Sum_probs=163.6
Q ss_pred CCCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 145 TLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 145 ~~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
.....|+++|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|
T Consensus 35 ~~~~~l~i~nls~~----------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~--p~~G~I~i~g---- 98 (282)
T cd03291 35 SDDNNLFFSNLCLV----------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE--PSEGKIKHSG---- 98 (282)
T ss_pred CCCCeEEEEEEEEe----------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC----
Confidence 33456999999984 2469999999999999999999999999999999999653 5689999998
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-------ccccccccCccCCcCC
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-------RCQDTMIGGSFVRGVS 297 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~t~vg~~~~~~LS 297 (640)
.|+|++|++.+++. ||+||+.++... .. .++.+.++.+++. ...++.++ ..+..||
T Consensus 99 -----~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~LS 161 (282)
T cd03291 99 -----RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGITLS 161 (282)
T ss_pred -----EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCcCC
Confidence 39999999998875 999999875311 11 1112223333332 22233332 2356899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L-~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||++|||+|+.+|++|||||||+|||+.++..+.+.+ +++. ++.|||+++|++.. + ..||++++|++|++++
T Consensus 162 gGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i~~ 238 (282)
T cd03291 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSSYF 238 (282)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999865 5554 47899999999764 4 6799999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+++++..
T Consensus 239 ~g~~~~~~~ 247 (282)
T cd03291 239 YGTFSELQS 247 (282)
T ss_pred ECCHHHHHh
Confidence 999988753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=306.28 Aligned_cols=204 Identities=28% Similarity=0.494 Sum_probs=175.0
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----K 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~ 225 (640)
++++++.|.- .+.++|+++||++++||..+|.||||||||||+|+++. +. ++++|++++.|++++ +
T Consensus 4 le~kq~~y~a--------~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~-Li-sp~~G~l~f~Ge~vs~~~pe 73 (223)
T COG4619 4 LELKQVGYLA--------GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LI-SPTSGTLLFEGEDVSTLKPE 73 (223)
T ss_pred hHHHHHHhhc--------CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHh-cc-CCCCceEEEcCccccccChH
Confidence 4555665542 56789999999999999999999999999999999996 43 356899999999986 3
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.+|++|+||.|.+.||+. ||++|+.|....+..+. ..+++.++|+.++|++..- ++.+..||||||||++
T Consensus 74 a~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L----~k~it~lSGGE~QriA 143 (223)
T COG4619 74 AYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSIL----TKNITELSGGEKQRIA 143 (223)
T ss_pred HHHHHHHHHHcCcccccc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhh----cchhhhccchHHHHHH
Confidence 689999999999999986 99999999877653221 3456778999999976432 3456789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|+|.|..-|+||+||||||+||+.+++.|-++|.++. .+.+.++++||++.. ..+.||+++-+..|++
T Consensus 144 liR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred HHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 9999999999999999999999999999999999986 568899999999764 5689999999999976
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=360.84 Aligned_cols=220 Identities=27% Similarity=0.470 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++|++++|+.. .+.+++|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.+||+++..
T Consensus 4 ~l~~~nl~~~y~~~----~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~i~~~~~ 77 (648)
T PRK10535 4 LLELKDIRRSYPSG----EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK--PTSGTYRVAGQDVATLDA 77 (648)
T ss_pred EEEEeeEEEEeCCC----CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEcCcCCH
Confidence 69999999998311 123579999999999999999999999999999999999653 568999999998753
Q ss_pred -h----ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -S----LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -~----~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
. .++.++|++|++.+|+.+|+.||+.+..... ....++.++++.++++.+||.+..|+. +..|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~-----~~~LS~Gq 149 (648)
T PRK10535 78 DALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQ-----PSQLSGGQ 149 (648)
T ss_pred HHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCC-----cccCCHHH
Confidence 1 1467999999999999999999999865322 223455667789999999998766654 46899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||++|||+|+.+|++|||||||+|||+.+++.+.+.|++++++|+|+|+++|++. ..+.||++++|++|++++.|++
T Consensus 150 ~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~--~~~~~d~i~~l~~G~i~~~g~~ 227 (648)
T PRK10535 150 QQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ--VAAQAERVIEIRDGEIVRNPPA 227 (648)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH--HHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999877999999999975 3467999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
++..
T Consensus 228 ~~~~ 231 (648)
T PRK10535 228 QEKV 231 (648)
T ss_pred cccc
Confidence 8775
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=352.86 Aligned_cols=212 Identities=26% Similarity=0.424 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++|++++| +++++|+|+||+|++||+++|+||||||||||||+|+|.+. +.+|+|.++|.
T Consensus 1 ml~i~~ls~~~--------~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~~------- 63 (530)
T PRK15064 1 MLSTANITMQF--------GAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE--PSAGNVSLDPN------- 63 (530)
T ss_pred CEEEEEEEEEe--------CCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC-------
Confidence 37899999998 34579999999999999999999999999999999999653 46899999873
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhc------------cCCCC-c----------------cHHHHHHHHHHHHHHcC
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALL------------RLPNT-L----------------TKQQKEKRAIDVINELG 279 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~------------~~~~~-~----------------~~~~~~~~v~~~l~~lg 279 (640)
..|+|++|++.+++.+||+||+.++... ..+.. . ...+.++++.++++.+|
T Consensus 64 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 143 (530)
T PRK15064 64 ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVG 143 (530)
T ss_pred CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCC
Confidence 3599999999999999999999875310 00000 0 00122456788999999
Q ss_pred CCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHH
Q 006571 280 LERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (640)
Q Consensus 280 L~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i 359 (640)
|.+..+. ..+..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||+++|++. .+
T Consensus 144 l~~~~~~----~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~~-~~ 215 (530)
T PRK15064 144 IPEEQHY----GLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDRH-FL 215 (530)
T ss_pred CChhHhc----CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCHH-HH
Confidence 9753321 23468999999999999999999999999999999999999999999863 5899999999975 47
Q ss_pred HhccCEEEEEcCCeE-EEecChHHHHH
Q 006571 360 FHKFDKLILLGKGSL-LYFGKASEAMA 385 (640)
Q Consensus 360 ~~~~D~i~vL~~G~i-v~~G~~~~~~~ 385 (640)
.+.||+|++|++|++ ++.|++++..+
T Consensus 216 ~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 216 NSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred HhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 789999999999999 58999887653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=302.35 Aligned_cols=163 Identities=29% Similarity=0.526 Sum_probs=143.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
|+++|++++|+ .++++|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|. +
T Consensus 1 i~~~~~~~~~~-------~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~-------~ 64 (166)
T cd03223 1 IELENLSLATP-------DGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEG-------E 64 (166)
T ss_pred CEEEEEEEEcC-------CCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCC-------c
Confidence 46899999882 13569999999999999999999999999999999999653 56899999874 5
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++|++.++ ..||+||+.+. .+..||||||||++||||
T Consensus 65 ~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~lara 105 (166)
T cd03223 65 DLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARL 105 (166)
T ss_pred eEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHH
Confidence 799999998876 57999999752 125799999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||++. ....||++++|++|
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~--~~~~~d~i~~l~~~ 163 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--LWKFHDRVLDLDGE 163 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh--HHhhCCEEEEEcCC
Confidence 99999999999999999999999999999876 689999999975 34789999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=403.13 Aligned_cols=206 Identities=24% Similarity=0.384 Sum_probs=171.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc-cEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG-GSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~-G~I~~~G~~~~~~~ 227 (640)
.|+++|++|+|+. ..++++|+|+|++|++|++++|+||||||||||+++|.|... +.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~-----~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~--~~~GG~I~l--------- 677 (1622)
T PLN03130 614 AISIKNGYFSWDS-----KAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP--PRSDASVVI--------- 677 (1622)
T ss_pred ceEEEeeEEEccC-----CCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc--cCCCceEEE---------
Confidence 5999999999842 124679999999999999999999999999999999999653 457 89974
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGq 300 (640)
+++|+||+|++.+|+. ||+|||.|+.. .+++ +.+++++.. .|+++.+|.+|.+. ..|||||
T Consensus 678 ~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d~e----~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G-~~LSGGQ 745 (1622)
T PLN03130 678 RGTVAYVPQVSWIFNA-TVRDNILFGSP------FDPE----RYERAIDVTALQHDLDLLPGGDLTEIGERG-VNISGGQ 745 (1622)
T ss_pred cCeEEEEcCccccCCC-CHHHHHhCCCc------ccHH----HHHHHHHHhCcHHHHHhCCCcccccccCCC-CCCCHHH
Confidence 4579999999999975 99999999732 1222 233333322 35778899998764 5699999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+||||++++|+|+|||||||+||+.++.++++ .++.+. +++|+|++||+++ ....||+|++|++|++++.|+
T Consensus 746 KQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 746 KQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999998865 556554 5899999999975 467899999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++.+
T Consensus 823 ~~eL~~ 828 (1622)
T PLN03130 823 YEELSN 828 (1622)
T ss_pred HHHHHh
Confidence 999864
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=353.72 Aligned_cols=210 Identities=28% Similarity=0.382 Sum_probs=173.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
.+|+++||+++|. +++++|+||||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+++.
T Consensus 5 ~~l~i~~l~~~y~-------~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~--p~~G~i~~~~~------ 69 (556)
T PRK11819 5 YIYTMNRVSKVVP-------PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPG------ 69 (556)
T ss_pred EEEEEeeEEEEeC-------CCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCC------
Confidence 4799999999981 14679999999999999999999999999999999999653 46899999752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhc---------------cCCCC-cc-----------------HHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALL---------------RLPNT-LT-----------------KQQKEKRAIDV 274 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~---------------~~~~~-~~-----------------~~~~~~~v~~~ 274 (640)
..||||+|++.+++.+||.||+.++... ..+.. .. ..+..+++.++
T Consensus 70 -~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (556)
T PRK11819 70 -IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIA 148 (556)
T ss_pred -CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 4699999999999999999999875320 00000 00 00123467788
Q ss_pred HHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Q 006571 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (640)
Q Consensus 275 l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~ 354 (640)
++.+||.. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.+...+.+.|+++ +.|||++||+
T Consensus 149 l~~~gl~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~---~~tviiisHd 219 (556)
T PRK11819 149 MDALRCPP-WDA-----KVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY---PGTVVAVTHD 219 (556)
T ss_pred HHhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC---CCeEEEEeCC
Confidence 99999953 444 45689999999999999999999999999999999999999999999886 3599999999
Q ss_pred CCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 355 PSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 355 ~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
+. .+...||+|++|++|+++ +.|+.++.
T Consensus 220 ~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 248 (556)
T PRK11819 220 RY-FLDNVAGWILELDRGRGIPWEGNYSSW 248 (556)
T ss_pred HH-HHHhhcCeEEEEeCCEEEEecCCHHHH
Confidence 75 477889999999999986 88987764
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=371.55 Aligned_cols=338 Identities=16% Similarity=0.165 Sum_probs=219.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeecccccc--ceecchh
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQL--KLELDEV 85 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 85 (640)
.++.++.++..++..+..+|...+.++|++|+++..+.+++.++.........+................. -..+.-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 343 (659)
T TIGR00954 264 GKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLV 343 (659)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999999999999999999999887776655533321111111011111000 0001111
Q ss_pred chhhhHhh-h----hhhhhhhhhc-cccC-------------------CCCccccccCCCCCCCCCcccccccc----CC
Q 006571 86 SSGAALSR-A----SSASLGLSFS-FTGF-------------------TMPPDEIADSKPFSDDDIPEDIEAGT----RE 136 (640)
Q Consensus 86 ~~g~~~~~-~----~~~~~g~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 136 (640)
..|..... . +..+.|.+.+ |..+ ++........+.++..+..+++.... ..
T Consensus 344 ~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~ 423 (659)
T TIGR00954 344 AVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRV 423 (659)
T ss_pred HHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 12221111 1 2222222221 1110 11111112222222222111111000 00
Q ss_pred C------------CC---CCCCCCCCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 006571 137 R------------PK---FQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLN 201 (640)
Q Consensus 137 ~------------~~---~~~~~~~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~ 201 (640)
. +. ..........|+++||++.|+ +++++|+|+||+|++||+++|+||||||||||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~-------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~ 496 (659)
T TIGR00954 424 EEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTP-------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFR 496 (659)
T ss_pred ccccccccccccccccccccccccCCCeEEEEeeEEECC-------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 0 00 000011123699999999872 2347999999999999999999999999999999
Q ss_pred HHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC
Q 006571 202 LLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (640)
Q Consensus 202 ~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (640)
+|+|.. ++.+|+|.+++ +++++||+|++.+++. |++||+.++....... .....++++.++++.++|.
T Consensus 497 lL~Gl~--~~~~G~i~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~ 564 (659)
T TIGR00954 497 ILGELW--PVYGGRLTKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLT 564 (659)
T ss_pred HHhCCC--CCCCCeEeecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCH
Confidence 999954 35689998864 4679999999999987 9999999864211000 0001234567888888887
Q ss_pred cccc------ccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 282 RCQD------TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 282 ~~~~------t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
+..+ +..+ ....||||||||++|||||+++|+++||||||++||+.++..+.+.+++ .|+|+|+++|++
T Consensus 565 ~~~~~~~g~~~~~~--~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~---~~~tvI~isH~~ 639 (659)
T TIGR00954 565 HILEREGGWSAVQD--WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRK 639 (659)
T ss_pred HHHhhcCCcccccc--cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH---cCCEEEEEeCch
Confidence 6443 3322 3468999999999999999999999999999999999999999998876 389999999997
Q ss_pred CcHHHhccCEEEEEcC
Q 006571 356 SSRLFHKFDKLILLGK 371 (640)
Q Consensus 356 ~~~i~~~~D~i~vL~~ 371 (640)
+. .+.||++++|+.
T Consensus 640 ~~--~~~~d~il~l~~ 653 (659)
T TIGR00954 640 SL--WKYHEYLLYMDG 653 (659)
T ss_pred HH--HHhCCEEEEEeC
Confidence 63 578999999974
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=349.10 Aligned_cols=215 Identities=21% Similarity=0.375 Sum_probs=172.3
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++++| +++.+|+|+||+|++||+++|+||||||||||+|+|+|.. +++.+|+|.++|+++..
T Consensus 259 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~ 329 (490)
T PRK10938 259 PRIVLNNGVVSY--------NDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGE 329 (490)
T ss_pred ceEEEeceEEEE--------CCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCC
Confidence 369999999998 3456999999999999999999999999999999999953 22258999999987521
Q ss_pred ---hccCcEEEEccCCCCCC--CCCHHHHHHHHHhc--cCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCC
Q 006571 226 ---SLKSKIGFVTQDDVLFP--HLTVKETLTYAALL--RLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~--~lTV~Enl~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LS 297 (640)
..++.++|++|++.++. ..|+++++.++... ....... ...+++++++++.++|.+ ..++. +..||
T Consensus 330 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 403 (490)
T PRK10938 330 TIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAP-----FHSLS 403 (490)
T ss_pred CHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCc-----hhhCC
Confidence 23567999999976543 24777776544211 0001111 223456889999999986 55543 46899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCcHHHh-ccCEEEEEcCCeEE
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFH-KFDKLILLGKGSLL 375 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~tH~~~~~i~~-~~D~i~vL~~G~iv 375 (640)
|||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++++. |||++||++.. +.+ +||++++|++|+++
T Consensus 404 gGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~G~i~ 482 (490)
T PRK10938 404 WGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPDGDIY 482 (490)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecCCceE
Confidence 9999999999999999999999999999999999999999999987754 79999999754 555 58999999999987
Q ss_pred Eec
Q 006571 376 YFG 378 (640)
Q Consensus 376 ~~G 378 (640)
+.-
T Consensus 483 ~~~ 485 (490)
T PRK10938 483 RYV 485 (490)
T ss_pred Eee
Confidence 754
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=348.14 Aligned_cols=215 Identities=20% Similarity=0.369 Sum_probs=175.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|+++.+ +.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|+++..
T Consensus 249 ~~i~~~~l~~~~----------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~ 316 (491)
T PRK10982 249 VILEVRNLTSLR----------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHN 316 (491)
T ss_pred cEEEEeCccccc----------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCC
Confidence 369999998852 359999999999999999999999999999999999653 468999999988742
Q ss_pred ---hccCcEEEEccCC---CCCCCCCHHHHHHHHHh--ccCCCC-ccHHHHHHHHHHHHHHcCCC-ccccccccCccCCc
Q 006571 226 ---SLKSKIGFVTQDD---VLFPHLTVKETLTYAAL--LRLPNT-LTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG 295 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~ 295 (640)
..++.++|++|++ .+|+.+|+.+|+.+... ...... ......++.+.++++.+++. +..++ .+.+
T Consensus 317 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~ 391 (491)
T PRK10982 317 ANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRT-----QIGS 391 (491)
T ss_pred HHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccc-----cccc
Confidence 2356699999985 47888998877433210 000001 12233456678899999985 34444 4578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv 375 (640)
|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||++. ++.++||++++|++|+++
T Consensus 392 LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNGLVA 470 (491)
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999888999999999975 577899999999999999
Q ss_pred EecCh
Q 006571 376 YFGKA 380 (640)
Q Consensus 376 ~~G~~ 380 (640)
..++.
T Consensus 471 ~~~~~ 475 (491)
T PRK10982 471 GIVDT 475 (491)
T ss_pred EEEcc
Confidence 87755
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=349.71 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=171.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++||+++|. +++++|+|+||+|++|++++|+|||||||||||++|+|... +.+|+|.+++ +
T Consensus 4 ~i~~~nls~~~~-------~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-------~ 67 (552)
T TIGR03719 4 IYTMNRVSKVVP-------PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFNGEARPAP-------G 67 (552)
T ss_pred EEEEeeEEEecC-------CCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecC-------C
Confidence 699999999982 14579999999999999999999999999999999999653 4689999975 2
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhc-cC-----------CCCccHH---------------------HHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALL-RL-----------PNTLTKQ---------------------QKEKRAIDVI 275 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~-----------~~~~~~~---------------------~~~~~v~~~l 275 (640)
..||||+|++.+++.+||+||+.++... +. ......+ ....++.+++
T Consensus 68 ~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (552)
T TIGR03719 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAM 147 (552)
T ss_pred CEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 4699999999999999999999875321 00 0000010 0123466677
Q ss_pred HHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 276 NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 276 ~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
+.+|++. .+. .+..|||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.|||++||++
T Consensus 148 ~~~~l~~-~~~-----~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiisHd~ 218 (552)
T TIGR03719 148 DALRCPP-WDA-----DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVTHDR 218 (552)
T ss_pred hhCCCCc-ccC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEeCCH
Confidence 7788853 343 45689999999999999999999999999999999999999999999875 35999999996
Q ss_pred CcHHHhccCEEEEEcCCeEE-EecChHHHHH
Q 006571 356 SSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (640)
Q Consensus 356 ~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (640)
. .+...||++++|++|+++ +.|+.++..+
T Consensus 219 ~-~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 219 Y-FLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred H-HHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 5 477889999999999976 7898876543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=348.65 Aligned_cols=203 Identities=23% Similarity=0.368 Sum_probs=171.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++.+|+|+||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++|.
T Consensus 318 ~~l~~~~l~~~~--------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 381 (530)
T PRK15064 318 NALEVENLTKGF--------DNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN------ 381 (530)
T ss_pred ceEEEEeeEEee--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 369999999998 34579999999999999999999999999999999999653 46899999873
Q ss_pred cCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHH
Q 006571 228 KSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 228 ~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+.+|||+|++. +++.+||.||+.+.. .. . ..++++.++++.+|+. +..+. .+..||||||||+
T Consensus 382 -~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGq~qrv 447 (530)
T PRK15064 382 -ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKK-----SVKVLSGGEKGRM 447 (530)
T ss_pred -eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcC-----cccccCHHHHHHH
Confidence 46999999964 566789999987521 11 1 1234578899999994 44554 4578999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
+|||+|+.+|+||||||||+|||+.++..+.+.|+++ +.|||++||++. .+..+||++++|++|+++ +.|+++++
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~ 523 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTYEEY 523 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCHHHH
Confidence 9999999999999999999999999999999999876 459999999975 577889999999999998 88988876
Q ss_pred H
Q 006571 384 M 384 (640)
Q Consensus 384 ~ 384 (640)
+
T Consensus 524 ~ 524 (530)
T PRK15064 524 L 524 (530)
T ss_pred H
Confidence 4
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=309.70 Aligned_cols=195 Identities=21% Similarity=0.218 Sum_probs=159.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-ECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-YNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~-~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
.+|+||||+|++|++++|+||||||||||+|+|+|... +.+|+|. ++|..+ .+.+++.+++.+|++||
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~--~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~en 69 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA--PDEGDFIGLRGDAL---------PLGANSFILPGLTGEEN 69 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCCCEEEecCcee---------ccccccccCCcCcHHHH
Confidence 37999999999999999999999999999999999643 5689997 777543 13356778899999999
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+.+...... ....+.. +.+.+.++|++..++. ++.||||||||++|||||+.+|+++||||||++||+.
T Consensus 70 l~~~~~~~~---~~~~~~~---~~~~~~~~l~~~~~~~-----~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 70 ARMMASLYG---LDGDEFS---HFCYQLTQLEQCYTDR-----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHcC---CCHHHHH---HHHHHHhChhHHhhch-----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 998765321 2222222 2333456777666654 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHHh
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~~ 389 (640)
++..+.+.|.+..+ ++|+|+++|++. .+..+||++++|++|++++.|+.+++.++++.
T Consensus 139 ~~~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 139 TQLRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 99999998866544 578999999976 46678999999999999999999999887764
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=308.67 Aligned_cols=216 Identities=28% Similarity=0.481 Sum_probs=182.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
..|+++||+.+| .+|+||+|+|++|+|||-.+|+|||||||||||++++|.. ++.+|.+.+.|+...
T Consensus 30 ~li~l~~v~v~r--------~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~--~pssg~~~~~G~~~G~~~ 99 (257)
T COG1119 30 PLIELKNVSVRR--------NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH--PPSSGDVTLLGRRFGKGE 99 (257)
T ss_pred ceEEecceEEEE--------CCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc--CCCCCceeeeeeeccCCc
Confidence 469999999998 5789999999999999999999999999999999999944 355899999999864
Q ss_pred --hhccCcEEEEccC--CCCCCCCCHHHHHHHHHh--ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 225 --KSLKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 225 --~~~~~~i~yV~Q~--~~l~~~lTV~Enl~~~~~--~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.++|++||+|.-+ ..+.+..+|+|-+.-+.. .-.......++..+++..+++.+|+.+..|... ..||-
T Consensus 100 ~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~-----~~LS~ 174 (257)
T COG1119 100 TIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPF-----GSLSQ 174 (257)
T ss_pred chHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCch-----hhcCH
Confidence 3679999999854 344556788888763321 111111234556778899999999998887654 58999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~--g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||-|||||+.+|++||||||++|||..+++.+++.|.+++.. +.++|+|||+.. ++-..+++++++++|++++
T Consensus 175 Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~g~v~~ 253 (257)
T COG1119 175 GEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKEGEVVA 253 (257)
T ss_pred hHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeCCceee
Confidence 9999999999999999999999999999999999999999999865 789999999965 5778899999999999999
Q ss_pred ecC
Q 006571 377 FGK 379 (640)
Q Consensus 377 ~G~ 379 (640)
.|.
T Consensus 254 ~g~ 256 (257)
T COG1119 254 QGK 256 (257)
T ss_pred ccc
Confidence 884
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=320.81 Aligned_cols=227 Identities=25% Similarity=0.451 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC---cccEEEECCEeCC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT---VGGSITYNDHPYS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~---~~G~I~~~G~~~~- 224 (640)
.|+++|++..+... .+...++++|||+|++||.+||||.||||||-..+.+.|.+..+. .+|+|.|+|+++-
T Consensus 6 lL~v~nLsV~f~~~----~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 6 LLSIRNLSVAFHQE----GGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred ceeeeccEEEEecC----CcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 58999999998543 356789999999999999999999999999999999998776532 4799999999873
Q ss_pred ---hh---cc-CcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 ---KS---LK-SKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 ---~~---~~-~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+. +| .+|+++||+| .|.|-.|+...|.-...+. ..+++++.++++.++|+.+|+++-.... +.++++
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~~yPHe 157 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--DAYPHE 157 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--hhCCcc
Confidence 12 23 4799999998 4677778888887665543 4577888899999999999998755433 568899
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||||||.||+||+.+|++||.||||++||..-+.+|+++|++|.++ |..+++||||+. .+.+++|||+||.+|++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVMQHGEI 236 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEEeccEE
Confidence 9999999999999999999999999999999999999999999999754 999999999976 47788999999999999
Q ss_pred EEecChHHHH
Q 006571 375 LYFGKASEAM 384 (640)
Q Consensus 375 v~~G~~~~~~ 384 (640)
++.|+.+++.
T Consensus 237 vE~~~t~~lF 246 (534)
T COG4172 237 VETGTTETLF 246 (534)
T ss_pred eecCcHHHHh
Confidence 9999988875
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=311.58 Aligned_cols=194 Identities=26% Similarity=0.438 Sum_probs=166.1
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
.++++|+++.|..+...... ...+++||||+|++||+++|||.||||||||-|+|.|.. . +++|+|+++|+++....
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~-pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-E-PTSGEILFEGKDITKLS 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-C-CCCceEEEcCcchhhcc
Confidence 58999999999764311111 247999999999999999999999999999999999754 3 46999999999864311
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+++..+++.++|+.+||.... ..+++++||||||||++||
T Consensus 82 ------------------------------------~~~~~~~v~elL~~Vgl~~~~----~~ryPhelSGGQrQRi~IA 121 (268)
T COG4608 82 ------------------------------------KEERRERVLELLEKVGLPEEF----LYRYPHELSGGQRQRIGIA 121 (268)
T ss_pred ------------------------------------hhHHHHHHHHHHHHhCCCHHH----hhcCCcccCchhhhhHHHH
Confidence 334567799999999986422 2357899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.+|+++++|||||+||...+.+|+++|+++.++ |.|.++++||++ .+..++|||.+|+.|+|++.|+.+++..
T Consensus 122 RALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 122 RALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred HHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHHHhh
Confidence 9999999999999999999999999999999999865 999999999976 4778899999999999999999999863
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=311.93 Aligned_cols=190 Identities=25% Similarity=0.305 Sum_probs=155.4
Q ss_pred cceeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 006571 171 DILNGITGSVN-----PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 171 ~iL~~vs~~i~-----~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lT 245 (640)
..|+|+++++. +||+++|+||||||||||+++|+|... +.+|+|.++|. .|+|++|++..++.+|
T Consensus 8 ~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~--p~~G~i~~~g~--------~i~~~~q~~~~~~~~t 77 (246)
T cd03237 8 KTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK--PDEGDIEIELD--------TVSYKPQYIKADYEGT 77 (246)
T ss_pred cccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCCeEEECCc--------eEEEecccccCCCCCC
Confidence 46777777776 799999999999999999999999653 56899999985 5999999988777789
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
|+||+.+...... . ....+.++++.++|.+..++. +..|||||||||+||++|+.+|+++||||||++
T Consensus 78 v~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~ 145 (246)
T cd03237 78 VRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDRE-----VPELSGGELQRVAIAACLSKDADIYLLDEPSAY 145 (246)
T ss_pred HHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999976532110 0 122356788899998766653 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEE--EecChHHH
Q 006571 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLL--YFGKASEA 383 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv--~~G~~~~~ 383 (640)
||+.++..+.+.|++++++ |+|||+++|++. .+..+||+|++|+++..+ ..+++.++
T Consensus 146 LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~~ 205 (246)
T cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQSL 205 (246)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchHH
Confidence 9999999999999999764 899999999965 466789999999765333 44555554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=308.31 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=180.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEc-cCCCCCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVT-QDDVLFPHLT 245 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~-Q~~~l~~~lT 245 (640)
.++.+||||+|++|++++++|||||||||+||+|+|.+. +.+|.|.++|.+.. +++-+++++|+ |...+.-.+.
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~--p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL--PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc--cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeech
Confidence 458999999999999999999999999999999999765 56999999998753 23446687776 4456665677
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
+.|.+....... .++.++..++.+.+.+.++|+...+.. ++.||-|||.|+.||.+|+++|+||||||||-|
T Consensus 115 ~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~-----vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 115 ALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWP-----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhh-----hhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 888887654432 567888889999999999998777654 588999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
||..++..|.+.|++..+ .+.||+.+||+.+ ++..+||||++|+.|+++|.|+.+++.+-|.
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999975 4899999999976 4889999999999999999999999987664
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=342.90 Aligned_cols=205 Identities=22% Similarity=0.372 Sum_probs=168.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||++.| +++.+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~------ 386 (556)
T PRK11819 323 KVIEAENLSKSF--------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET------ 386 (556)
T ss_pred eEEEEEeEEEEE--------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc------
Confidence 469999999998 34579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..||||+|++ .+++.+||.||+.++..... ... ....+.++++.++|.+ ..+. .+.+|||||||||+
T Consensus 387 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 455 (556)
T PRK11819 387 -VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGN--REIPSRAYVGRFNFKGGDQQK-----KVGVLSGGERNRLH 455 (556)
T ss_pred -eEEEEEeCchhhcCCCCCHHHHHHhhccccc---ccc--cHHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 78888999999998643211 111 1223456899999963 3444 35689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEE-EecChHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASEA 383 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~~ 383 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++||++. .+..+||+|++|++ |++. +.|+.++.
T Consensus 456 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~~~~ 531 (556)
T PRK11819 456 LAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNFQEY 531 (556)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCHHHH
Confidence 9999999999999999999999999999999999872 4 8999999965 57788999999986 7876 56765543
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=338.32 Aligned_cols=204 Identities=25% Similarity=0.393 Sum_probs=168.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++.+|+|+||+|++|++++|+||||||||||+++|+|... +.+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~------ 384 (552)
T TIGR03719 321 KVIEAENLSKGF--------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET------ 384 (552)
T ss_pred eEEEEeeEEEEE--------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc------
Confidence 369999999998 34579999999999999999999999999999999999653 56899999542
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..|||++|++ .+++.+||.||+.++.... ..... +.++.++++.+||.+ ..+. .+..|||||||||+
T Consensus 385 -~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~-----~~~~LSgGe~qrv~ 453 (552)
T TIGR03719 385 -VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQK-----KVGQLSGGERNRVH 453 (552)
T ss_pred -eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcC-----chhhCCHHHHHHHH
Confidence 1599999996 4788899999999864321 11111 223557899999964 3444 34689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-CeEE-EecChHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-GSLL-YFGKASE 382 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-G~iv-~~G~~~~ 382 (640)
|||+|+.+|++|||||||+|||+.++..+.+.|+++. + |||++||++. .+.++||+|++|++ |+++ +.|+.++
T Consensus 454 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 454 LAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999872 4 8999999965 57788999999986 5876 5676654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=289.28 Aligned_cols=220 Identities=27% Similarity=0.441 Sum_probs=189.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-EeCCh-
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSK- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G-~~~~~- 225 (640)
..|+++||+.++ +.-.+|+|+||++.|||+-+|+|||||||||+|++|+|.. ++..|+|+++| .++++
T Consensus 4 ~iL~~~~vsVsF--------~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt--rp~~G~v~f~g~~dl~~~ 73 (249)
T COG4674 4 IILYLDGVSVSF--------GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKL 73 (249)
T ss_pred ceEEEeceEEEE--------cceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC--CCCcceEEEcCchhhccC
Confidence 468999999998 5667999999999999999999999999999999999954 35689999999 77753
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC-----CccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN-----TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
..|.-||--||.|..|+.+||+|||.++.....+- .-...+.+++++++|...||.+.++... ..|
T Consensus 74 ~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A-----~~L 148 (249)
T COG4674 74 PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLA-----ALL 148 (249)
T ss_pred CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhh-----hhh
Confidence 23667999999999999999999999875432110 0113445668999999999998887654 479
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|-||||++.|++-++.+|++|+||||++|+--....+.-++|+.++. +++|+++-||.. .+.+++|+|.||++|.+..
T Consensus 149 SHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~VL~ 226 (249)
T COG4674 149 SHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGSVLA 226 (249)
T ss_pred ccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccceee
Confidence 99999999999999999999999999999998888999999999986 689999999965 5888999999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+.+++.
T Consensus 227 EGsld~v~ 234 (249)
T COG4674 227 EGSLDEVQ 234 (249)
T ss_pred cccHHHhh
Confidence 99998874
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=309.11 Aligned_cols=199 Identities=26% Similarity=0.364 Sum_probs=163.0
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-----------ECCEe
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (640)
||+++|. +.+.+|+|+| .+++||+++|+||||||||||+|+|+|... +++|+|. ++|++
T Consensus 5 ~~~~~y~-------~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~--p~~G~I~~~~~~~~~~~~~~g~~ 74 (255)
T cd03236 5 EPVHRYG-------PNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLK--PNLGKFDDPPDWDEILDEFRGSE 74 (255)
T ss_pred Ccceeec-------CcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEeeccccchhhhhccCch
Confidence 5778872 2236999999 599999999999999999999999999643 5689996 88887
Q ss_pred CCh---hcc---CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcC
Q 006571 223 YSK---SLK---SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 223 ~~~---~~~---~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~L 296 (640)
+.. ..+ ..++|++|+..+++. ++.+++.+.. .....++.+.++++.+||.+..+. .+..|
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~L 140 (255)
T cd03236 75 LQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDR-----NIDQL 140 (255)
T ss_pred hhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcC-----ChhhC
Confidence 643 112 247999999888874 8888887642 122334567889999999876554 34689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||||||++|||+|+.+|++++|||||++||+.++..+.+.|++++++++|||+++|++. .+.++||+|++|+ |++.+
T Consensus 141 S~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 141 SGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCc
Confidence 999999999999999999999999999999999999999999999877899999999975 4667899999994 66665
Q ss_pred ec
Q 006571 377 FG 378 (640)
Q Consensus 377 ~G 378 (640)
.|
T Consensus 219 ~~ 220 (255)
T cd03236 219 YG 220 (255)
T ss_pred ce
Confidence 44
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=338.01 Aligned_cols=197 Identities=29% Similarity=0.372 Sum_probs=168.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|++++| ++ ..|+++||+|++||+++|+||||||||||+++|+|.+. +.+|+|.++
T Consensus 339 ~~l~~~~ls~~~--------~~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~-------- 399 (590)
T PRK13409 339 TLVEYPDLTKKL--------GD-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE-------- 399 (590)
T ss_pred eEEEEcceEEEE--------CC-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe--------
Confidence 469999999988 22 25999999999999999999999999999999999653 568999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
..++|++|+..+++.+||+||+.+.... ... ...+.++++.++|.+..++. +..|||||||||+||
T Consensus 400 -~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~-----~~~LSGGe~QRvaiA 465 (590)
T PRK13409 400 -LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKN-----VKDLSGGELQRVAIA 465 (590)
T ss_pred -eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCC-----cccCCHHHHHHHHHH
Confidence 1599999998888889999999875321 111 22467899999998766654 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+|||+++|+ |++...|+
T Consensus 466 raL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 466 ACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Ccceeeee
Confidence 9999999999999999999999999999999999864 899999999965 4678899999996 58877776
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=341.38 Aligned_cols=203 Identities=29% Similarity=0.452 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||++.| +++.+|+|+||+|++|+++||+||||||||||||+|+|... +.+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~------ 374 (638)
T PRK10636 311 PLLKMEKVSAGY--------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG------ 374 (638)
T ss_pred ceEEEEeeEEEe--------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC------
Confidence 369999999998 34679999999999999999999999999999999999653 56899999742
Q ss_pred cCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHH
Q 006571 228 KSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 228 ~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv 304 (640)
.++||++|+. .+.+..|+.+++... .+ .....++.++++.+++.. ..++. +..|||||||||
T Consensus 375 -~~igy~~Q~~~~~l~~~~~~~~~~~~~----~~-----~~~~~~~~~~L~~~~l~~~~~~~~-----~~~LSgGekqRl 439 (638)
T PRK10636 375 -IKLGYFAQHQLEFLRADESPLQHLARL----AP-----QELEQKLRDYLGGFGFQGDKVTEE-----TRRFSGGEKARL 439 (638)
T ss_pred -EEEEEecCcchhhCCccchHHHHHHHh----Cc-----hhhHHHHHHHHHHcCCChhHhcCc-----hhhCCHHHHHHH
Confidence 2599999974 455667888876421 11 123456788999999963 45543 468999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
+||++|+.+|++|||||||+|||+.+...+.+.|+++ .| |||++|||+. .+..+||+|++|++|+++ +.|+.++.
T Consensus 440 ~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 440 VLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 9999999999999999999999999999999999987 34 9999999965 577899999999999997 88998876
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
.+
T Consensus 516 ~~ 517 (638)
T PRK10636 516 QQ 517 (638)
T ss_pred HH
Confidence 43
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=361.93 Aligned_cols=335 Identities=22% Similarity=0.294 Sum_probs=229.6
Q ss_pred HhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccc-cceecchhc--hhhhHh---hhh---
Q 006571 25 AFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQ-LKLELDEVS--SGAALS---RAS--- 95 (640)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~~~~---~~~--- 95 (640)
-.|++....|||||+.+..-.+++..++..-.+.-+ +...++-|. .++|++... ...++. ..+
T Consensus 1000 ~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f--------~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~ 1071 (1381)
T KOG0054|consen 1000 FSETLQGLSTIRAFGKEERFIQENDELIDENSRAFF--------LSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLI 1071 (1381)
T ss_pred HHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 356677779999999999999999888865444422 112223333 466655421 111111 111
Q ss_pred -hhhhhhhhccccCCCC---------cccc-----ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEEeEEEEEe
Q 006571 96 -SASLGLSFSFTGFTMP---------PDEI-----ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVI 160 (640)
Q Consensus 96 -~~~~g~~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vs~~~~ 160 (640)
....|+..+++. ++. ..++ +=+|...+.+++++ .....+...++..-+....|+|+|++.+|.
T Consensus 1072 ~~g~vGLslsyal-~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYr 1149 (1381)
T KOG0054|consen 1072 SPGLVGLSLSYAL-QLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYR 1149 (1381)
T ss_pred CcchHHHHHHHHH-HHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeC
Confidence 233444444432 111 1111 11133333333322 000000000111112234799999999993
Q ss_pred eccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEcc
Q 006571 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQ 236 (640)
Q Consensus 161 ~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q 236 (640)
.+...|||||||+|+|||.+||||..|||||||+++|- |+.++ .+|+|.+||.|+.+ ++|++++.+||
T Consensus 1150 ------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF-Rl~e~-~~G~I~IDgvdI~~igL~dLRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1150 ------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF-RLVEP-AEGEILIDGVDISKIGLHDLRSRLSIIPQ 1221 (1381)
T ss_pred ------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH-HhcCc-cCCeEEEcCeecccccHHHHHhcCeeeCC
Confidence 23468999999999999999999999999999999999 56654 58999999999974 78999999999
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
||.+|.+ |||.||.-.... ..+.+.++-.+...++.++ .++...|+.|.+ ...++|-||||-+++||||+++.+|
T Consensus 1222 dPvLFsG-TvR~NLDPf~e~-sD~~IW~ALe~~~Lk~~v~--~~p~~Ld~~v~e-gG~N~SvGQRQLlCLARALLr~skI 1296 (1381)
T KOG0054|consen 1222 DPVLFSG-TVRFNLDPFDEY-SDDEIWEALERCQLKDVVS--SLPGGLDSEVSE-GGENFSVGQRQLLCLARALLRKSKI 1296 (1381)
T ss_pred CCceecC-ccccccCccccc-CHHHHHHHHHHhChHHHHh--hCCcCCCceecC-CCccCChHHHHHHHHHHHHhccCCE
Confidence 9999986 999999632110 0011111222223344444 345557777754 3467999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|+|||+|++.|+++-..|.+.||+-- +++|||.+.|++.+ + --+|||+||++|+++++|+|.++++
T Consensus 1297 LvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-V-md~DrVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1297 LVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-V-MDSDRVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred EEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-h-hhcCeEEEeeCCeEeecCChHHHHh
Confidence 99999999999999999999999854 38999999999886 4 4589999999999999999999974
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=336.95 Aligned_cols=205 Identities=26% Similarity=0.453 Sum_probs=168.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +++++|+|+||+|++|++++|+|||||||||||++|+|.+. +.+|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~--------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~---- 382 (635)
T PRK11147 318 IVFEMENVNYQI--------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL---- 382 (635)
T ss_pred ceEEEeeeEEEE--------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc----
Confidence 369999999998 34579999999999999999999999999999999999653 56899998 4332
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.|||++|+. .+++.+||.||+.++.... ... .....+.++++.+++. +..++. +..|||||||||+
T Consensus 383 --~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGekqRl~ 450 (635)
T PRK11147 383 --EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTP-----VKALSGGERNRLL 450 (635)
T ss_pred --EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhCh-----hhhCCHHHHHHHH
Confidence 599999985 5888999999998753211 011 1234577889999985 344543 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc-CCeEE-EecChHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG-KGSLL-YFGKASEA 383 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~-~G~iv-~~G~~~~~ 383 (640)
||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||.. .+..+||+|++|+ +|++. |.|+.++-
T Consensus 451 la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 451 LARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 999999999999999999999999999999999876 459999999965 5778899999997 79985 46666653
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=275.95 Aligned_cols=144 Identities=33% Similarity=0.561 Sum_probs=130.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
++++|++++| +++++|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|. +
T Consensus 1 l~~~~l~~~~--------~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~~~-------~ 63 (144)
T cd03221 1 IELENLSKTY--------GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE--PDEGIVTWGST-------V 63 (144)
T ss_pred CEEEEEEEEE--------CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCe-------E
Confidence 4789999988 23469999999999999999999999999999999999643 56899999985 4
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
.++|++| ||+||+||++||||
T Consensus 64 ~i~~~~~-----------------------------------------------------------lS~G~~~rv~lara 84 (144)
T cd03221 64 KIGYFEQ-----------------------------------------------------------LSGGEKMRLALAKL 84 (144)
T ss_pred EEEEEcc-----------------------------------------------------------CCHHHHHHHHHHHH
Confidence 6899998 99999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|+++|++. ++.+.||++++|++|+
T Consensus 85 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 85 LLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999876 479999999965 4667899999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=286.23 Aligned_cols=222 Identities=22% Similarity=0.315 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeecc----------------ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc
Q 006571 149 YLKFTDVTYKVILKG----------------MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~----------------~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~ 212 (640)
.|+++||++.|+... ........+|+||||++++||.++|+|+||||||||||+|+|.+. |+
T Consensus 3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~--Pt 80 (249)
T COG1134 3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK--PT 80 (249)
T ss_pred EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC--CC
Confidence 578889988876431 112234679999999999999999999999999999999999543 56
Q ss_pred ccEEEECCEeCChhccCcEEEEcc-CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 213 GGSITYNDHPYSKSLKSKIGFVTQ-DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 213 ~G~I~~~G~~~~~~~~~~i~yV~Q-~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
+|+|.++|+-. .+.. .-.+-|.+|.+||+.+-+.+. .+++++.+++++++++.-+|.+..|.++
T Consensus 81 ~G~v~v~G~v~---------~li~lg~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv--- 145 (249)
T COG1134 81 SGKVKVTGKVA---------PLIELGAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV--- 145 (249)
T ss_pred CceEEEcceEe---------hhhhcccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch---
Confidence 99999999742 1111 223456799999999877653 4678899999999999889999888754
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+.+|-||+=|+++|.|...+|+|||+||..+-.|+.=+++-.+.++++.++++|||+++|++. .+.++||++++|++
T Consensus 146 --ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~ 222 (249)
T COG1134 146 --KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEH 222 (249)
T ss_pred --hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeC
Confidence 799999999999999999999999999999999999999999999999888899999999965 58899999999999
Q ss_pred CeEEEecChHHHHHHHHhc
Q 006571 372 GSLLYFGKASEAMAYFSSI 390 (640)
Q Consensus 372 G~iv~~G~~~~~~~~f~~~ 390 (640)
|++.+.|.+++++++|+..
T Consensus 223 G~i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 223 GQIRMEGSPEEVIPAYEED 241 (249)
T ss_pred CEEEEcCCHHHHHHHHHHh
Confidence 9999999999999998764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=361.99 Aligned_cols=209 Identities=22% Similarity=0.400 Sum_probs=171.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.++++|++|+|+ ..++++|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|
T Consensus 636 ~i~~~~~~~~~~------~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~--~~~G~i~~~g-------- 699 (1522)
T TIGR00957 636 SITVHNATFTWA------RDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVHMKG-------- 699 (1522)
T ss_pred cEEEEEeEEEcC------CCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--cCCcEEEECC--------
Confidence 699999999983 123579999999999999999999999999999999999653 4689999987
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH---HHHHcC-CCccccccccCccCCcCCHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAID---VINELG-LERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lg-L~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+|+||+|++.+++ .||+|||.|+.. ..++.. +++.+ +.+.++ ++++.+|.+|.. ..+||||||||+
T Consensus 700 -~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~-~~~~~~~~l~~~l~~~~~g~~t~ig~~-g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYY-QQVLEACALLPDLEILPSGDRTEIGEK-GVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHH-HHHHHHhCCHHHHHhcCCCCCceecCC-CCCCCHHHHHHH
Confidence 4999999999985 699999998632 122221 22222 122332 355667888765 567999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH--HHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI--AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l--~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
+|||||+.+|+|++||||||+||+.++..+.+.+.+. ..+++|+|++||++.. ...||+|++|++|++++.|++++
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~--l~~~D~ii~l~~G~i~~~g~~~~ 847 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY--LPQVDVIIVMSGGKISEMGSYQE 847 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh--hhhCCEEEEecCCeEEeeCCHHH
Confidence 9999999999999999999999999999999999753 2358999999999764 45699999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+.+
T Consensus 848 l~~ 850 (1522)
T TIGR00957 848 LLQ 850 (1522)
T ss_pred HHh
Confidence 864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=334.45 Aligned_cols=208 Identities=27% Similarity=0.427 Sum_probs=163.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++||+++| +++.+|+||||+|++|+++||+||||||||||||+|+|... +++|+|.++|..
T Consensus 1 ~i~i~nls~~~--------g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~--pd~G~I~~~~~~------ 64 (638)
T PRK10636 1 MIVFSSLQIRR--------GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS--ADGGSYTFPGNW------ 64 (638)
T ss_pred CEEEEEEEEEe--------CCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEecCCC------
Confidence 37899999998 45679999999999999999999999999999999999543 568999998852
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-----------------------ccC-CCCccHHHHHHHHHHHHHHcCCC-cc
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------------------LRL-PNTLTKQQKEKRAIDVINELGLE-RC 283 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~-----------------------~~~-~~~~~~~~~~~~v~~~l~~lgL~-~~ 283 (640)
.++|++|++..+. .|+.+++.-... +.. .......+.+.++.++++.+|+. +.
T Consensus 65 -~i~~~~q~~~~~~-~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~ 142 (638)
T PRK10636 65 -QLAWVNQETPALP-QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQ 142 (638)
T ss_pred -EEEEEecCCCCCC-CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchh
Confidence 3899998754442 466555431100 000 00000012345688899999996 34
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+.. +..|||||||||+||++|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||.. .+.+.|
T Consensus 143 ~~~~-----~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~~~~ 213 (638)
T PRK10636 143 LERP-----VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLDPIV 213 (638)
T ss_pred hcCc-----hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHHHhc
Confidence 5544 4689999999999999999999999999999999999999999998875 569999999965 477889
Q ss_pred CEEEEEcCCeEE-EecChHHH
Q 006571 364 DKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 364 D~i~vL~~G~iv-~~G~~~~~ 383 (640)
|+|++|++|+++ |.|+.+..
T Consensus 214 d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 214 DKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred CEEEEEeCCEEEEecCCHHHH
Confidence 999999999996 67876543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=333.76 Aligned_cols=207 Identities=20% Similarity=0.366 Sum_probs=166.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||++.|. +.+.+|+|+||+|++|++++|+||||||||||||+|+|.+. +.+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~------ 571 (718)
T PLN03073 507 PIISFSDASFGYP-------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK------ 571 (718)
T ss_pred ceEEEEeeEEEeC-------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc------
Confidence 4699999999982 23469999999999999999999999999999999999653 56899998752
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.+|||++|++ ++.+++.+|..+......+. .. .+++.++++.+||.+ ..+. .+..|||||||||+|
T Consensus 572 -~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~-----~~~~LSgGqkqRvaL 638 (718)
T PLN03073 572 -VRMAVFSQHH--VDGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQ-----PMYTLSGGQKSRVAF 638 (718)
T ss_pred -eeEEEEeccc--cccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcC-----CccccCHHHHHHHHH
Confidence 4699999985 33456766654322111111 11 345778999999963 3443 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~~ 385 (640)
||+|+.+|++|||||||+|||+.+...+++.|++. .| |||++||++. .+...||++++|++|+++ +.|++++...
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 99999999999999999999999999998888764 34 9999999965 477889999999999998 7888876544
Q ss_pred H
Q 006571 386 Y 386 (640)
Q Consensus 386 ~ 386 (640)
+
T Consensus 715 ~ 715 (718)
T PLN03073 715 T 715 (718)
T ss_pred H
Confidence 3
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=283.56 Aligned_cols=203 Identities=28% Similarity=0.416 Sum_probs=168.3
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh----ccCcEEEEccCCC--CC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV--LF 241 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yV~Q~~~--l~ 241 (640)
.++++|+++|++|..|+++-|+|.||||||||+|+|+|.+. +++|+|.+||.++++. ....++-|+|||. .+
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~--~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~ 94 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK--PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA 94 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc--cCCceEEECceecccCCHHHHhhHHHHHhcchhhCCc
Confidence 46789999999999999999999999999999999999764 5699999999998642 2245788999984 69
Q ss_pred CCCCHHHHHHHHHhccCCCCccH---HHHHHHHHHHHHHc--CCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 242 PHLTVKETLTYAALLRLPNTLTK---QQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
+.||+.||+.++...-..+.++. ..+.+...+-++.+ ||++..++.+| -|||||||-+++++|.++.|+|
T Consensus 95 ~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pki 169 (263)
T COG1101 95 PELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKI 169 (263)
T ss_pred ccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcE
Confidence 99999999998764311122222 22333444555554 66777777665 6999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+|||-|++|||.++..|++.-.++.++ +.|.+|+||.+. +...+-+|.++|++|+||.+-
T Consensus 170 LLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 170 LLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred EEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999998754 779999999975 467899999999999999764
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=268.75 Aligned_cols=192 Identities=31% Similarity=0.500 Sum_probs=166.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCC--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYS--K 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~--~ 225 (640)
++.++||+.+. ++.-+|-|+|++|.+||++-||||||||||||+..+.|.+... ..+|++++|++++. +
T Consensus 2 ~l~l~nvsl~l--------~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lP 73 (213)
T COG4136 2 MLCLKNVSLRL--------PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLP 73 (213)
T ss_pred ceeeeeeeecC--------CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccc
Confidence 47789998764 4667999999999999999999999999999999999976432 46899999999886 3
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+|++|+.+||+.+||+++|.+||.|+ +|.++.-..++..++..+++.||....+. .+.+||||||-||+
T Consensus 74 a~qRq~GiLFQD~lLFphlsVg~Nl~fA----lp~~~KG~aRr~~a~aAL~~~gL~g~f~~-----dP~tlSGGQrARva 144 (213)
T COG4136 74 AAQRQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQ-----DPATLSGGQRARVA 144 (213)
T ss_pred hhhhheeeeecccccccccccccceEEe----cCcccccHHHHhhHHHHHHHhccchhhhc-----ChhhcCcchHHHHH
Confidence 5688999999999999999999999997 45556666778889999999999877764 35789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCc
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSS 357 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~ 357 (640)
+-|+|+..|+.++||||+|.||..-+.++.++.-.-. ..|..+|.+|||..+
T Consensus 145 L~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 145 LLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 9999999999999999999999999999998876544 459999999999643
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=281.04 Aligned_cols=157 Identities=27% Similarity=0.388 Sum_probs=132.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.+++|+|+||++++|++++|+||||||||||||+|.+ .+|+|.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~------~~G~v~~~~~~~-~~~~~~~~~~~q------------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY------ASGKARLISFLP-KFSRNKLIFIDQ------------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh------cCCcEEECCccc-ccccccEEEEhH------------
Confidence 5679999999999999999999999999999999963 379999988732 222445888887
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsg 325 (640)
.++++.++|... .+. .++.||||||||++|||+|+.+ |++|||||||++
T Consensus 68 -----------------------~~~l~~~~L~~~~~~~-----~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 -----------------------LQFLIDVGLGYLTLGQ-----KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred -----------------------HHHHHHcCCCccccCC-----CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 135667787642 343 4578999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
||+.++..+.+.|+++++.|+|||++||++.. + +.||++++|++|+.
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSG 166 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCC
Confidence 99999999999999998779999999999753 4 67999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=281.08 Aligned_cols=152 Identities=27% Similarity=0.425 Sum_probs=132.6
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG 232 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~ 232 (640)
.||+++| +++.+++++ +++++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.+ ++
T Consensus 4 ~~l~~~~--------~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~--------i~ 64 (177)
T cd03222 4 PDCVKRY--------GVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI--PNGDNDEWDGIT--------PV 64 (177)
T ss_pred CCeEEEE--------CCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCcEEEECCEE--------EE
Confidence 5788887 456789985 9999999999999999999999999999653 568999999864 78
Q ss_pred EEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh
Q 006571 233 FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (640)
Q Consensus 233 yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~ 312 (640)
|++|+.. ||||||||++|||+|+.
T Consensus 65 ~~~q~~~--------------------------------------------------------LSgGq~qrv~laral~~ 88 (177)
T cd03222 65 YKPQYID--------------------------------------------------------LSGGELQRVAIAAALLR 88 (177)
T ss_pred EEcccCC--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 8888532 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe--cCh
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF--GKA 380 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~--G~~ 380 (640)
+|++++|||||++||+.++..+.+.++++++++ +|||+++|++. .+.++||++++|+++-.++. |.|
T Consensus 89 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~ 158 (177)
T cd03222 89 NATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQP 158 (177)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCC
Confidence 999999999999999999999999999997765 89999999965 46678999999998766544 544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=328.61 Aligned_cols=207 Identities=24% Similarity=0.382 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
+|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|... +++|+|.++|..
T Consensus 3 ~l~i~~ls~~~--------~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~--p~~G~I~~~~~~------ 66 (635)
T PRK11147 3 LISIHGAWLSF--------SDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL--LDDGRIIYEQDL------ 66 (635)
T ss_pred EEEEeeEEEEe--------CCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEeCCCC------
Confidence 58999999998 34679999999999999999999999999999999999653 568999998732
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHh-----------c--cCCC------------------CccHHHHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAAL-----------L--RLPN------------------TLTKQQKEKRAIDVINE 277 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~-----------~--~~~~------------------~~~~~~~~~~v~~~l~~ 277 (640)
.++|++|++......+|.+++..+.. + .... .........++.++++.
T Consensus 67 -~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 145 (635)
T PRK11147 67 -IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ 145 (635)
T ss_pred -EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 26788876543333466665431100 0 0000 00001124567889999
Q ss_pred cCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 278 lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
+||.. +. .+..|||||||||+|||+|+.+|+||||||||++||+.+...+.+.|+++ +.|||+|||++.
T Consensus 146 lgl~~--~~-----~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~---~~tvlivsHd~~- 214 (635)
T PRK11147 146 LGLDP--DA-----ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF---QGSIIFISHDRS- 214 (635)
T ss_pred CCCCC--CC-----chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC---CCEEEEEeCCHH-
Confidence 99963 33 45789999999999999999999999999999999999999999999887 359999999965
Q ss_pred HHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 358 RLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 358 ~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
.+...||+|++|++|+++ +.|+.++.
T Consensus 215 ~l~~~~d~i~~L~~G~i~~~~g~~~~~ 241 (635)
T PRK11147 215 FIRNMATRIVDLDRGKLVSYPGNYDQY 241 (635)
T ss_pred HHHHhcCeEEEEECCEEEEecCCHHHH
Confidence 477889999999999997 56887653
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=342.98 Aligned_cols=224 Identities=25% Similarity=0.436 Sum_probs=201.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..+..+|+++.|.. .++ +++++|+.|++||+.+++|||||||||++|+|.|.. ++++|+++++|.++..
T Consensus 563 ~~~~~~~L~k~y~~------~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~--~~t~G~a~i~g~~i~~~~ 633 (885)
T KOG0059|consen 563 SALVLNNLSKVYGG------KDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET--KPTSGEALIKGHDITVST 633 (885)
T ss_pred ceEEEcceeeeecc------hhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc--cCCcceEEEecCcccccc
Confidence 46889999998832 122 999999999999999999999999999999999954 3569999999998853
Q ss_pred ---hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
..++.+||+||+|.+++.+|.+|++.+.++++ +++..+.++.++.+++.++|.++.|+.+ +.+|||+||
T Consensus 634 ~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~-----~~ySgG~kR 705 (885)
T KOG0059|consen 634 DFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQV-----RTYSGGNKR 705 (885)
T ss_pred chhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccch-----hhCCCcchh
Confidence 26788999999999999999999999999887 4566667777999999999999998865 589999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|+++|.||+.+|++++|||||+|+||.+++.+++.++++.++|+.||++||.. ++...+|||+.+|.+|++.-.|++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~ 784 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQE 784 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHH
Confidence 99999999999999999999999999999999999999998888999999995 57889999999999999999999999
Q ss_pred HHHHHHh
Q 006571 383 AMAYFSS 389 (640)
Q Consensus 383 ~~~~f~~ 389 (640)
+...|..
T Consensus 785 LKsrfG~ 791 (885)
T KOG0059|consen 785 LKSRYGS 791 (885)
T ss_pred HHhhcCC
Confidence 9987753
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=353.45 Aligned_cols=192 Identities=27% Similarity=0.453 Sum_probs=159.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
+++|+|+|++|++|++++|+|||||||||||++|+|... +.+|+|.++| .|+||+|++.+++. ||+||
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~--~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eN 506 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE--PSEGKIKHSG---------RISFSPQTSWIMPG-TIKDN 506 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECC---------EEEEEeCCCccCCc-cHHHH
Confidence 469999999999999999999999999999999999653 5689999998 39999999999975 99999
Q ss_pred HHHHHhccCCCCccHHHHHH-----HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006571 250 LTYAALLRLPNTLTKQQKEK-----RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 324 (640)
|.|+... ..+..++ .+++.++.+ ++..+|.+|.. ...|||||||||+||||++.+|+|+||||||+
T Consensus 507 I~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~s 577 (1490)
T TIGR01271 507 IIFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFT 577 (1490)
T ss_pred HHhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9987421 1111111 122333333 45557778765 56799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 325 GLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 325 gLD~~s~~~i~~~-L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.++..+.+. ++++. +|+|+|++||++.. ...||+|++|++|++++.|+++++..
T Consensus 578 aLD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~--~~~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 578 HLDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH--LKKADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred cCCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH--HHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999985 66665 48999999999764 35699999999999999999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=270.76 Aligned_cols=226 Identities=21% Similarity=0.452 Sum_probs=190.1
Q ss_pred eEEEEeEEEEEeecc-ccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 149 YLKFTDVTYKVILKG-MTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~-~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.++++|+++.+.... .-.+....+++.|||+++.|+.+||+|.||||||||.|+|+|... |++|+|.+||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~--PTsG~il~n~~~L~~~D 81 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGEILINDHPLHFGD 81 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC--CCCceEEECCccccccc
Confidence 478888887763221 112234568999999999999999999999999999999999763 569999999999741
Q ss_pred -hcc-CcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-CccccccccCccCCcCCHHH
Q 006571 226 -SLK-SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-ERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -~~~-~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~vg~~~~~~LSGGq 300 (640)
..| ++|-++||||. +.|.+.+..-|....++ ..++..+++.+++.+-++.+|| ++.++ -++.-||-||
T Consensus 82 y~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l--~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~~Q 154 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL--NTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAPGQ 154 (267)
T ss_pred hHhhhhheeeeecCCccccChhhhhhhHhcchhhh--cccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCchh
Confidence 233 67999999974 67888888888776554 3457788899999999999998 44444 3567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||++||||+.+|+|+|.||...+||...+.++++++-++.++ |.+-|.++.++. .+..++|+|+||++|++++.|+
T Consensus 155 KQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 155 KQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeecCC
Confidence 99999999999999999999999999999999999999999864 999999999865 4788999999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
+.+++
T Consensus 234 t~~v~ 238 (267)
T COG4167 234 TADVL 238 (267)
T ss_pred hhhhh
Confidence 99885
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=268.42 Aligned_cols=152 Identities=37% Similarity=0.729 Sum_probs=135.8
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++|++++| .++.+|+++|++|++|++++|+||||||||||+++|+|.+. +.+|+|+++|.++.. ..
T Consensus 2 ~~~~~~~~--------~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~ 71 (157)
T cd00267 2 IENLSFRY--------GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEEL 71 (157)
T ss_pred eEEEEEEe--------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccCCHHHH
Confidence 67899987 23479999999999999999999999999999999999653 468999999987643 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.++|++| |||||+||++||
T Consensus 72 ~~~i~~~~q-----------------------------------------------------------lS~G~~~r~~l~ 92 (157)
T cd00267 72 RRRIGYVPQ-----------------------------------------------------------LSGGQRQRVALA 92 (157)
T ss_pred HhceEEEee-----------------------------------------------------------CCHHHHHHHHHH
Confidence 567899988 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
++++.+|++++|||||+|||..++..+.+.|+++.+.++|+|+++|++. .+...||++++|++|+
T Consensus 93 ~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 93 RALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999998776799999999965 4667789999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=329.87 Aligned_cols=211 Identities=23% Similarity=0.405 Sum_probs=175.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|.++++.. ....+.|+||||+|++|+++||+||-|||||+||.+|.|.+. ..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~-----~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~--~~sG~v~v~gs------ 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDS-----ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP--KLSGSVAVNGS------ 583 (1381)
T ss_pred ceEEEeeeeEecCC-----CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc--cccceEEEcCe------
Confidence 36999999999742 234459999999999999999999999999999999999775 56899999986
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHH---HHc-CCCccccccccCccCCcCCHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI---NEL-GLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l---~~l-gL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++||+|++.++.. ||||||.|+... ++++.+++-+.+ +++ -|+++-.|.||++++ +||||||||
T Consensus 584 ---iaYv~Q~pWI~ng-TvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGi-nLSGGQKqR 651 (1381)
T KOG0054|consen 584 ---VAYVPQQPWIQNG-TVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGI-NLSGGQKQR 651 (1381)
T ss_pred ---EEEeccccHhhCC-cHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCcc-CCcHhHHHH
Confidence 9999999999965 999999998432 223333333322 222 245677888997765 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+++|||+.+|++|++||.|.|++|+....+|.+..-+..-++||+|++||+.. ....||+|++|++|+|++.|+++|+
T Consensus 652 IsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 652 ISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecccCHHHH
Confidence 99999999999999999999999999999988766544445899999999864 5688999999999999999999999
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
.+
T Consensus 730 ~~ 731 (1381)
T KOG0054|consen 730 LK 731 (1381)
T ss_pred Hh
Confidence 83
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=318.18 Aligned_cols=189 Identities=28% Similarity=0.388 Sum_probs=155.5
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE-----------ECCEe
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----------YNDHP 222 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~-----------~~G~~ 222 (640)
+++++|. ++..+|++++ .+++|++++|+||||||||||+|+|+|.+. +..|+|. ++|.+
T Consensus 78 ~~~~~yg-------~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~--p~~G~i~~~~~~~~~~~~~~G~~ 147 (590)
T PRK13409 78 EPVHRYG-------VNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI--PNLGDYEEEPSWDEVLKRFRGTE 147 (590)
T ss_pred CceEEec-------CCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCccccCCCcHHHHHHHhCChH
Confidence 3677771 2346999999 999999999999999999999999999653 4589997 99988
Q ss_pred CChh------ccCcEEEEccC----CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006571 223 YSKS------LKSKIGFVTQD----DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (640)
Q Consensus 223 ~~~~------~~~~i~yV~Q~----~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (640)
+... .+.++++++|. +.++. .||+|++.+. +..++++++++.++|.+..|+.
T Consensus 148 l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~----- 209 (590)
T PRK13409 148 LQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKV------------DERGKLDEVVERLGLENILDRD----- 209 (590)
T ss_pred HHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCC-----
Confidence 7431 12345666664 44443 3999998631 1234678899999998776664
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
+.+|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|+|++|+++
T Consensus 210 ~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 210 ISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 468999999999999999999999999999999999999999999999988 999999999975 577889999999873
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=342.50 Aligned_cols=199 Identities=27% Similarity=0.374 Sum_probs=155.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++++|+|+|++|++|++++|+|||||||||||++|+|.+. +.+|+|.++ ++||||+|++.+++ .||+|
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~--~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~e 739 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWAE---------RSIAYVPQQAWIMN-ATVRG 739 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEEC---------CeEEEEeCCCccCC-CcHHH
Confidence 4579999999999999999999999999999999999653 458999863 46999999999885 69999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
||.|+.... .....+..+...+++.++.+ +++.++.+|. ....|||||||||+|||||+.+|+|+||||||++||+
T Consensus 740 nI~~~~~~~-~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 740 NILFFDEED-AARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHcCChhh-HHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 999853110 00000000111233344444 3344566654 3578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 329 TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 329 ~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
.++..+++.+.....+|+|+|++||++.. ...||+|++|++|++++.|+++++.+
T Consensus 816 ~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~ 870 (1560)
T PTZ00243 816 HVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR 870 (1560)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence 99999887543222358999999999753 46799999999999999999998753
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=261.11 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=170.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe---CC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~---~~- 224 (640)
.++++++++.| +...-.+||||++.|||+++|+|.|||||||||++|++++. ++.|+|.|.-.+ ..
T Consensus 6 LL~V~~lsk~Y--------g~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~--p~~G~v~Y~~r~~~~~dl 75 (258)
T COG4107 6 LLSVSGLSKLY--------GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT--PDAGTVTYRMRDGQPRDL 75 (258)
T ss_pred ceeehhhhhhh--------CCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC--CCCCeEEEEcCCCCchhH
Confidence 58999999988 44567899999999999999999999999999999999885 568999996533 21
Q ss_pred ----h-----hccCcEEEEccCCC--CC----CCCCHHHHHHH-HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc
Q 006571 225 ----K-----SLKSKIGFVTQDDV--LF----PHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288 (640)
Q Consensus 225 ----~-----~~~~~i~yV~Q~~~--l~----~~lTV~Enl~~-~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v 288 (640)
+ -.|-..|+|.|+|. +- ..-.|.|-+.- +++ .....++.+.++++++.++... +
T Consensus 76 ~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-------HYG~iR~~a~~WL~~VEI~~~R---i 145 (258)
T COG4107 76 YTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-------HYGNIRAEAQDWLEEVEIDLDR---I 145 (258)
T ss_pred hhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-------hhhhHHHHHHHHHHhcccCccc---c
Confidence 1 13456899999874 22 12233443331 111 1123456678899998876432 2
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
+..++.+|||++||+.|||.|++.|+++|+||||.|||..-+..++++++.+..+ |..+|++|||+.- +.-++||.+
T Consensus 146 -DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~V-arLla~rlm 223 (258)
T COG4107 146 -DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAV-ARLLADRLM 223 (258)
T ss_pred -cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHH-HHHhhhcce
Confidence 3457899999999999999999999999999999999999999999999999865 9999999999753 445689999
Q ss_pred EEcCCeEEEecChHHHH
Q 006571 368 LLGKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL~~G~iv~~G~~~~~~ 384 (640)
+|++|++++.|-.+.++
T Consensus 224 vmk~g~vve~GLTDrvL 240 (258)
T COG4107 224 VMKQGQVVESGLTDRVL 240 (258)
T ss_pred eecCCCEeccccccccc
Confidence 99999999999888775
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=263.54 Aligned_cols=187 Identities=25% Similarity=0.431 Sum_probs=162.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---h
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---S 226 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---~ 226 (640)
++.+|++.. ++++.++.++||++.+||++-|.|||||||||||++|+|... +.+|+|.++|.++.. .
T Consensus 3 L~a~~L~~~--------R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~--p~~G~v~~~~~~i~~~~~~ 72 (209)
T COG4133 3 LEAENLSCE--------RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR--PDAGEVYWQGEPIQNVRES 72 (209)
T ss_pred chhhhhhhc--------cCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC--CCCCeEEecCCCCccchhh
Confidence 556677654 367789999999999999999999999999999999999764 568999999998863 2
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+++.+-|+-.++-+=+.+||.|||.|....... ...+.+.+.++.+||....|.++ ..||-||||||+|
T Consensus 73 ~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~-----~~LSAGQqRRvAl 141 (209)
T COG4133 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPV-----GQLSAGQQRRVAL 141 (209)
T ss_pred HHHHHHHhhccccccchhhHHHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccch-----hhcchhHHHHHHH
Confidence 456788999899998999999999998765321 12345788999999998888765 5899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
||-++..++++|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 142 ArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 142 ARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 999999999999999999999999999999999888889999999999875
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=305.69 Aligned_cols=208 Identities=29% Similarity=0.460 Sum_probs=169.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++|++++| +++++|+|+|+++.+|+.+||||+||||||||||+|+|... +.+|+|...+-
T Consensus 3 ~i~~~~ls~~~--------g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~--~~~G~i~~~~~------- 65 (530)
T COG0488 3 MITLENLSLAY--------GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE--PDSGEVTRPKG------- 65 (530)
T ss_pred eEEEeeeEEee--------CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc--CCCCeEeecCC-------
Confidence 68999999998 57899999999999999999999999999999999999764 56899987542
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhcc-------------CCCC--------------ccHHHHHHHHHHHHHHcCCC
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR-------------LPNT--------------LTKQQKEKRAIDVINELGLE 281 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~-------------~~~~--------------~~~~~~~~~v~~~l~~lgL~ 281 (640)
-+++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.++..++..+|++
T Consensus 66 ~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~ 145 (530)
T COG0488 66 LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFP 145 (530)
T ss_pred ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCC
Confidence 25999999999999899999887653210 0000 00001134667788888887
Q ss_pred ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh
Q 006571 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH 361 (640)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~ 361 (640)
+. ++. +.+||||||.||+||++|+.+|++|||||||++||..+..-+-+.|++. .| |+|+|||| ...+-+
T Consensus 146 ~~-~~~-----~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~FLd~ 215 (530)
T COG0488 146 DE-DRP-----VSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYFLDN 215 (530)
T ss_pred cc-cCc-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHHHHH
Confidence 65 554 4689999999999999999999999999999999999998888888753 46 99999999 556888
Q ss_pred ccCEEEEEcCCeE-EEecChHHH
Q 006571 362 KFDKLILLGKGSL-LYFGKASEA 383 (640)
Q Consensus 362 ~~D~i~vL~~G~i-v~~G~~~~~ 383 (640)
.|++|+-++.|++ .|.|..+.-
T Consensus 216 V~t~I~~ld~g~l~~y~Gny~~~ 238 (530)
T COG0488 216 VATHILELDRGKLTPYKGNYSSY 238 (530)
T ss_pred HhhheEEecCCceeEecCCHHHH
Confidence 9999999999986 566765543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=318.51 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=157.5
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeC--
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPY-- 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~-- 223 (640)
...|+++|++++| +++++|+|+||+|++|+++||+|||||||||||++|+|+... .+.+|+|.+.++..
T Consensus 175 ~~~I~i~nls~~y--------~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g 246 (718)
T PLN03073 175 IKDIHMENFSISV--------GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVG 246 (718)
T ss_pred ceeEEEceEEEEe--------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCC
Confidence 3479999999998 345699999999999999999999999999999999986421 23468887644331
Q ss_pred ---Ch-------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHH-------------------HHH
Q 006571 224 ---SK-------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ-------------------QKE 268 (640)
Q Consensus 224 ---~~-------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~-------------------~~~ 268 (640)
+. .+++.++|++|++.+... ++.++...... ...+.+ ..+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 321 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANK----DGVDKDAVSQRLEEIYKRLELIDAYTAE 321 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccc----cccchHHHHHHHHHHHHHHHhcCcchHH
Confidence 10 012335667765443221 22222111000 000111 234
Q ss_pred HHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q 006571 269 KRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (640)
Q Consensus 269 ~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~T 347 (640)
+++.+++..+||. +..++ .+..|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.|
T Consensus 322 ~r~~~~L~~lgl~~~~~~~-----~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~t 393 (718)
T PLN03073 322 ARAASILAGLSFTPEMQVK-----ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKT 393 (718)
T ss_pred HHHHHHHHHCCCChHHHhC-----chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCE
Confidence 4566778888885 23343 34689999999999999999999999999999999999999999999876 679
Q ss_pred EEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHH
Q 006571 348 VVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEA 383 (640)
Q Consensus 348 vI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~ 383 (640)
||+++|+.. .+...||+|++|++|+++ |.|+.++.
T Consensus 394 viivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 394 FIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred EEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999964 577889999999999996 77876543
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=264.24 Aligned_cols=191 Identities=23% Similarity=0.371 Sum_probs=135.8
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHH-HHHHcCCCCCCcccEEEEC------------CEeCCh--hcc-CcE
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLL-NLLSGRLMEPTVGGSITYN------------DHPYSK--SLK-SKI 231 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl-~~L~G~~~~~~~~G~I~~~------------G~~~~~--~~~-~~i 231 (640)
.+.++|+||||+|++||+++|+||||||||||+ ..|.. .|++.+. .....+ ..+ ...
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSP 78 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-------HHHHHHhhcccchhhhhhcccCccccccccCCCc
Confidence 356799999999999999999999999999995 44431 1222110 000000 111 224
Q ss_pred EEEccCCC--CCCCCCHH---HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHH
Q 006571 232 GFVTQDDV--LFPHLTVK---ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 232 ~yV~Q~~~--l~~~lTV~---Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
++..|++. +.|..+|. +...+...+. ......++ .+.++.++|.+ ..+. .+..||||||||++
T Consensus 79 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~-----~~~~LSgG~~qrv~ 147 (226)
T cd03270 79 AIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSR-----SAPTLSGGEAQRIR 147 (226)
T ss_pred eEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccC-----ccCcCCHHHHHHHH
Confidence 44445432 23444544 2222221111 11112222 56789999975 2443 45789999999999
Q ss_pred HHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEe
Q 006571 306 IGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYF 377 (640)
Q Consensus 306 IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~ 377 (640)
|||+|+.+| ++|||||||+|||+.++..+.+.|++++++|.|||++||++. .+ +.||++++| ++|+|+++
T Consensus 148 laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~ 225 (226)
T cd03270 148 LATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQ 225 (226)
T ss_pred HHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEec
Confidence 999999998 599999999999999999999999999878999999999975 34 689999999 99999998
Q ss_pred c
Q 006571 378 G 378 (640)
Q Consensus 378 G 378 (640)
|
T Consensus 226 g 226 (226)
T cd03270 226 G 226 (226)
T ss_pred C
Confidence 6
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=248.81 Aligned_cols=213 Identities=27% Similarity=0.416 Sum_probs=173.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC--C-
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--S- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--~- 224 (640)
..|..+||++++.... ..+-.-++|+|+||+++.||++++=||||+||||||++|-|... +++|+|++....- .
T Consensus 3 ~~l~v~~~~KtFtlH~-q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~--~d~G~I~v~H~g~~vdl 79 (235)
T COG4778 3 TPLNVSNVSKTFTLHQ-QGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL--PDEGQILVRHEGEWVDL 79 (235)
T ss_pred ceeeeecchhheEeee-cCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC--CCCceEEEEeCcchhhh
Confidence 3588999988875321 11123479999999999999999999999999999999998543 4689999965431 1
Q ss_pred ------h--hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 225 ------K--SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 225 ------~--~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+ .. ++.||||.|.-...|..+..|-+.-.+..+ .++.+....++.+++..+++++..-.. .+..
T Consensus 80 ~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~L----aPaT 152 (235)
T COG4778 80 VTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSL----APAT 152 (235)
T ss_pred hccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcC----CCcc
Confidence 1 22 456999999988888888888777655433 567788888999999999998755443 3578
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+||||+|||.|||.++.+-+||+|||||+.||..++..+++++++-..+|..+|=+-||- +.-...|||++-+..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999999999888899999999993 334557899988764
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-31 Score=243.80 Aligned_cols=133 Identities=44% Similarity=0.768 Sum_probs=117.8
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHH
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
|+|||++|++|++++|+|+||||||||+++|+|... +.+|+|.++|.++.. ..++.++|++|++.+++.+||+|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~--~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~ 78 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP--PDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRE 78 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH--ESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccc--cccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999653 468999999999864 45788999999999999999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs 324 (640)
| ...++++++++.+++.+..++.++.. ...||||||||++||+||+.+|+++||||||+
T Consensus 79 ~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 79 N----------------ESDERIEEVLKKLGLEDLLDRKIGQR-ASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp H----------------HHHHHHHHHHHHTTHGGGTGSBGTSC-GGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred c----------------cccccccccccccccccccccccccc-cchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9 23445788999999888777777543 47899999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=263.85 Aligned_cols=195 Identities=27% Similarity=0.410 Sum_probs=153.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-----cCCCC----C----------CcccEEEECCEeCChhccC-
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-----GRLME----P----------TVGGSITYNDHPYSKSLKS- 229 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-----G~~~~----~----------~~~G~I~~~G~~~~~~~~~- 229 (640)
..-|+|||++|+.|++++|.|+||||||||++.+. ..+.. + ...--|.+|..|+....|+
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45799999999999999999999999999998652 11110 0 0112477787776421111
Q ss_pred -----------------------------cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC
Q 006571 230 -----------------------------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280 (640)
Q Consensus 230 -----------------------------~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL 280 (640)
.+.|..++...+..+||.|++.|..... ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 2456666666667899999999875431 12456788999999
Q ss_pred Cc-cccccccCccCCcCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 281 ER-CQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 281 ~~-~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+ ..+. .+..||||||||++||++|+.+ |++++|||||+|||+.....+.+.|+++.++|.|||+++|++.
T Consensus 159 ~~l~l~~-----~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcC-----ccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 76 2343 4578999999999999999996 7999999999999999999999999999888999999999975
Q ss_pred cHHHhccCEEEEE------cCCeEEEecCh
Q 006571 357 SRLFHKFDKLILL------GKGSLLYFGKA 380 (640)
Q Consensus 357 ~~i~~~~D~i~vL------~~G~iv~~G~~ 380 (640)
. .+.||++++| ++|+|++.|++
T Consensus 234 ~--i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 V--IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred H--HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 3 4679999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-29 Score=277.52 Aligned_cols=205 Identities=28% Similarity=0.440 Sum_probs=166.7
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
...++++|+++.|. +.+.+++++||.|.+|+.+||+||||+|||||||+|+|... +.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~-------~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~--~~~G~v~~g~~----- 384 (530)
T COG0488 319 KLVLEFENVSKGYD-------GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG--PLSGTVKVGET----- 384 (530)
T ss_pred CeeEEEeccccccC-------CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc--cCCceEEeCCc-----
Confidence 34799999999982 23689999999999999999999999999999999999653 44899887532
Q ss_pred ccCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
-++||..|+. .+.+..|+.|++.-.. |.. .+..+...|..|+++...- ...+..||||||.|+.
T Consensus 385 --v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~~-----~e~~~r~~L~~f~F~~~~~----~~~v~~LSGGEk~Rl~ 449 (530)
T COG0488 385 --VKIGYFDQHRDELDPDKTVLEELSEGF----PDG-----DEQEVRAYLGRFGFTGEDQ----EKPVGVLSGGEKARLL 449 (530)
T ss_pred --eEEEEEEehhhhcCccCcHHHHHHhhC----ccc-----cHHHHHHHHHHcCCChHHH----hCchhhcCHhHHHHHH
Confidence 3499999986 4457889999997532 111 1566888999999964321 1345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe-cChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF-GKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~-G~~~~~~ 384 (640)
+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+||||. ..+...|++++++.+ ++..+ |..++..
T Consensus 450 La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y~~y~ 524 (530)
T COG0488 450 LAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGYEDYL 524 (530)
T ss_pred HHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCHHHHH
Confidence 999999999999999999999999999999999865 34999999995 457889999999998 66544 7776654
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
+
T Consensus 525 ~ 525 (530)
T COG0488 525 E 525 (530)
T ss_pred H
Confidence 3
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=268.80 Aligned_cols=212 Identities=23% Similarity=0.445 Sum_probs=177.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--- 224 (640)
+.++++|++.. ..++||||++++||+++|-|-=|||+|-|+++|.|. .+..+|+|.+||+++.
T Consensus 262 ~~l~v~~l~~~------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~--~~~~~G~i~l~G~~v~~~s 327 (500)
T COG1129 262 PVLEVRNLSGG------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA--RPASSGEILLDGKPVRIRS 327 (500)
T ss_pred cEEEEecCCCC------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCC--CcCCCceEEECCEEccCCC
Confidence 45788877642 268999999999999999999999999999999993 3456899999999874
Q ss_pred --hhccCcEEEEccC---CCCCCCCCHHHHHHHHHhccCC-C-CccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcC
Q 006571 225 --KSLKSKIGFVTQD---DVLFPHLTVKETLTYAALLRLP-N-TLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGV 296 (640)
Q Consensus 225 --~~~~~~i~yV~Q~---~~l~~~lTV~Enl~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~L 296 (640)
+..+..|+|||.| .-++..++|++|+.++...+.. . -++.....+.+++.++.+++... .+ ..+..|
T Consensus 328 p~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~-----~~v~~L 402 (500)
T COG1129 328 PRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE-----QPIGTL 402 (500)
T ss_pred HHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc-----chhhcC
Confidence 2456789999987 5688899999999988322211 1 24556666778899999988422 22 345689
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|||.+|||.|||.|..+|++|||||||.|.|.-+..+|++++++++++|++||++|-++ +|+..+||||+||++|+++.
T Consensus 403 SGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 403 SGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred CchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 46889999999999999987
Q ss_pred ecC
Q 006571 377 FGK 379 (640)
Q Consensus 377 ~G~ 379 (640)
.=+
T Consensus 482 e~~ 484 (500)
T COG1129 482 ELD 484 (500)
T ss_pred Eec
Confidence 443
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=246.11 Aligned_cols=165 Identities=18% Similarity=0.267 Sum_probs=129.9
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-------CCcccEEEECCEeCCh-hccCcEEEEccCCCCCCCCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME-------PTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-------~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lT 245 (640)
+++++++++| +++|+||||||||||+++|+|.+.. ....|++.++|++... ..+++++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6789999999 9999999999999999999985421 1123578888876532 3357899999998766
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII----INPSLLFLDE 321 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDE 321 (640)
|+. . ..++++++++. .+..++ .+..||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~--~---------~~~~~~~~l~~---~~~~~~-----~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI--I---------SQGDVSEIIEA---PGKKVQ-----RLSLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE--E---------ehhhHHHHHhC---CCcccc-----chhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 12345666665 333333 45789999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||+|||+.+...+.+.|+++++ +.|||++||++. . .+.||+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence 9999999999999999999865 789999999975 3 478999999975
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=238.93 Aligned_cols=207 Identities=28% Similarity=0.464 Sum_probs=174.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++++||... .-|-.+|+.+..||+.-++|||||||||||-.++|.. +-+|+|.++|.++..
T Consensus 3 l~qln~v~~~------------tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~---~~sGsi~~~G~~l~~~~~ 67 (248)
T COG4138 3 LMQLNDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT---SGSGSIQFAGQPLEAWSA 67 (248)
T ss_pred eeeecccccc------------ccccccccccccceEEEEECCCCccHHHHHHHHhCCC---CCCceEEECCcchhHHhH
Confidence 4667777654 2466799999999999999999999999999999965 348999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
++.++-+|..|+..-...|.|..++.+. . +.+++...++++...++|.+.... .+..|||||.|||
T Consensus 68 ~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~R-----s~~qLSGGEWQRV 134 (248)
T COG4138 68 TELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGR-----STNQLSGGEWQRV 134 (248)
T ss_pred hHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhh-----hhhhcCcccceee
Confidence 5667778998876544468999988763 2 345667778888999999876654 3478999999999
Q ss_pred HHHHHHhh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEIII-----NP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~~-----~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
-+|...+. || ++|+||||.++||...+..+...|.++++.|.+|||+.||++. ..+.+|++.+|+.|++...
T Consensus 135 RLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~ 213 (248)
T COG4138 135 RLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLAS 213 (248)
T ss_pred EEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEee
Confidence 99987654 44 6999999999999999999999999999999999999999886 5688999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|..+|++
T Consensus 214 G~~~eVl 220 (248)
T COG4138 214 GRREEVL 220 (248)
T ss_pred cchhhhc
Confidence 9999986
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-29 Score=249.16 Aligned_cols=179 Identities=15% Similarity=0.187 Sum_probs=134.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
+++.+|+++++ ++++|+||||||||||+++|.- . +|.+.....++++++++|+..+++.+|++
T Consensus 15 ~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-~-----------~G~~~~~~~~~~i~~~~~~~~~~~~~~~~ 77 (212)
T cd03274 15 AGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-V-----------FGFRASKMRQKKLSDLIHNSAGHPNLDSC 77 (212)
T ss_pred CCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-H-----------hccCHHHhhhhhHHHHhcCCCCCCCCceE
Confidence 45679999987 8999999999999999999982 1 22222112235799999999999999999
Q ss_pred HHHHHHHhccCC-----CCccHHHHHH--HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh----CCCE
Q 006571 248 ETLTYAALLRLP-----NTLTKQQKEK--RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSL 316 (640)
Q Consensus 248 Enl~~~~~~~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~----~P~i 316 (640)
+++.+....... .....+.... ...++++.++|++..++. +..||+|||||++||++++. +|++
T Consensus 78 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~-----~~~lS~G~~~r~~la~al~~~~~~~p~i 152 (212)
T cd03274 78 SVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKN-----ISNLSGGEKTLSSLALVFALHHYKPTPL 152 (212)
T ss_pred EEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccc-----hhhcCHHHHHHHHHHHHHHhcccCCCCE
Confidence 988765432100 0011111000 014455667787766654 35899999999999999974 5799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++|||||+|||+.++..+.+.|+++++ +.|+|++||++ ++.+.||++++|..
T Consensus 153 lilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 153 YVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 999999999999999999999999864 67899999994 47789999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-27 Score=239.57 Aligned_cols=186 Identities=16% Similarity=0.309 Sum_probs=131.6
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC---------------CCCCccc--------EEEECCEe--
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL---------------MEPTVGG--------SITYNDHP-- 222 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~---------------~~~~~~G--------~I~~~G~~-- 222 (640)
+++.++++++ |++++|+||||||||||+++|++.+ .. +.+| +|.+++.+
T Consensus 13 ~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~-~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 13 KDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLH-EGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred ccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEe-CCCCCCCceEEEEEEEEcCCCc
Confidence 3567888887 7899999999999999999998321 11 1234 56665532
Q ss_pred --CC---hhccCcEEEEccCCCCCC-CCCHHHHHHHHHhccCCCCccH-HHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 223 --YS---KSLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTK-QQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 223 --~~---~~~~~~i~yV~Q~~~l~~-~lTV~Enl~~~~~~~~~~~~~~-~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+. ...++.++|++|+..+++ ..|..|...+............ .....++. +.+++.+..+. .+..
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~---~l~~l~~~~~~-----~~~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKIN---SLTNMKQDEQQ-----EMQQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchH---Hhhhccccccc-----cccc
Confidence 11 134677999999888877 4577776665544322211000 00011222 22344333332 3568
Q ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 296 VSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
||||||||++||++|+. +|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++ ++.+.||++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999865 78889888884 4678999999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-27 Score=242.27 Aligned_cols=182 Identities=18% Similarity=0.246 Sum_probs=136.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE-eCCh------hccCcEEEEccCC---------CCCCCCCH
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH-PYSK------SLKSKIGFVTQDD---------VLFPHLTV 246 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~-~~~~------~~~~~i~yV~Q~~---------~l~~~lTV 246 (640)
..+++|+||||||||||+++|++.+. +...|++.+.|. ++-. ..+.++++++|++ .+.|.+||
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~-~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV 103 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLG-ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITV 103 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEE
Confidence 44999999999999999999998654 223568888776 3211 1234799999985 35668899
Q ss_pred HHHHHHHHhccCCCCc-cHHHHHHHHHHHHHHcCCCccccc---------------cccCccCCcCCHHHHHHHHHHHHH
Q 006571 247 KETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQDT---------------MIGGSFVRGVSGGERKRVCIGNEI 310 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~t---------------~vg~~~~~~LSGGqrqRv~IA~aL 310 (640)
.+++.++...+. .. .+....+++.++++.+||...... ...+..+..||||||||++||++|
T Consensus 104 ~r~I~~~~~~~~--~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 104 TRQIVLGGTNKY--LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEcCCceEE--EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 998876532211 01 122334678889999998611000 011234678999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 311 I----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 311 ~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+ .+|++++|||||++||+.++..+.+.|+++. +|.|||++||++ ++.+.||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 8 5789999999999999999999999999985 488999999994 4678899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=230.71 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=132.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEe-CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-Ee-CC-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVN-PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HP-YS- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~-~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G-~~-~~- 224 (640)
.|+++|+. +| .++ ++|+|... +|++++|+||||||||||+++|++.++.+. .+....+. .. +.
T Consensus 5 ~i~l~nf~-~y--------~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~-~~~~~~~~~~~~~~~ 71 (213)
T cd03279 5 KLELKNFG-PF--------REE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKT-PRYGRQENLRSVFAP 71 (213)
T ss_pred EEEEECCc-Cc--------CCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCc-cccccchhHHHHhcC
Confidence 47788776 54 111 55666644 589999999999999999999997554322 33333321 01 11
Q ss_pred hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 225 ~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
...+..|++++|++.... ++..+. .++.++..+.+ .+...++.+..+ ..+..||||||||+
T Consensus 72 ~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~-----~~~~~lS~G~~~r~ 132 (213)
T cd03279 72 GEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLA-----RPVSTLSGGETFLA 132 (213)
T ss_pred CCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhc-----CCccccCHHHHHHH
Confidence 233566999999874311 121111 12222221111 122223333333 34578999999999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 305 CIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 305 ~IA~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+||++|+. +|+++||||||++||+.+...+.+.|++++++++|||++||++. .+...+|+++++++|.
T Consensus 133 ~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 133 SLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred HHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 99999985 57899999999999999999999999999877999999999975 4678899999999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=274.45 Aligned_cols=138 Identities=25% Similarity=0.365 Sum_probs=112.4
Q ss_pred CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHh---hCCC
Q 006571 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEII---INPS 315 (640)
Q Consensus 240 l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~---~~P~ 315 (640)
.+...||.|+|.++..-........++..+++ ++++.+||.+. .+. .+..||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q-----~~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGR-----PLSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 56678999999987542211111233444556 57888999764 444 34689999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc------CCeEEEecChHHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (640)
+|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.||+|++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999888999999999975 34 8999999996 799999999998753
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-27 Score=242.54 Aligned_cols=205 Identities=24% Similarity=0.308 Sum_probs=163.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||.|.|.. ..-=+..||++|+.||++-|+|.||||||||+++|.|. +. |++|+|.+||+|++.
T Consensus 321 ~~lelrnvrfay~~-------~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-~~-PqsG~I~ldg~pV~~e~ 391 (546)
T COG4615 321 KTLELRNVRFAYQD-------NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-YQ-PQSGEILLDGKPVSAEQ 391 (546)
T ss_pred cceeeeeeeeccCc-------ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-cC-CCCCceeECCccCCCCC
Confidence 47999999999842 22457889999999999999999999999999999995 44 468999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++|+-++-|+-|..+|+.+- .++.. ...+.++..++.+.|.+...-.-|+-..-.||-|||||
T Consensus 392 ledYR~LfSavFsDyhLF~~ll------------~~e~~---as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKR 456 (546)
T COG4615 392 LEDYRKLFSAVFSDYHLFDQLL------------GPEGK---ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKR 456 (546)
T ss_pred HHHHHHHHHHHhhhHhhhHhhh------------CCccC---CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHH
Confidence 56778888999988887521 11111 12334666777777665433222222345699999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l-~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
+++-.||+-+-+|+++||=-+--||.-+..+.+.+--+ .++||||+.+|||- .-+..+||++.+.+|++++.-
T Consensus 457 lAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 457 LALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999998877654 56799999999994 368899999999999998764
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=236.79 Aligned_cols=222 Identities=23% Similarity=0.382 Sum_probs=186.1
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC---
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--- 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--- 223 (640)
.+.|+++|++..- ..+...+++|||+|++||+++|.|-.|-|-+.|+.+|+|... + .+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~-------~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~-~-~~G~I~l~G~~v~~~ 325 (501)
T COG3845 255 EVVLEVEDLSVKD-------RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK-P-ASGRILLNGKDVLGR 325 (501)
T ss_pred CeEEEEeeeEeec-------CCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc-c-CCceEEECCEecccc
Confidence 4579999999752 223578999999999999999999999999999999999543 3 459999999996
Q ss_pred -Ch--hccCcEEEEccCC---CCCCCCCHHHHHHHHHhccCC----CCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 224 -SK--SLKSKIGFVTQDD---VLFPHLTVKETLTYAALLRLP----NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 224 -~~--~~~~~i~yV~Q~~---~l~~~lTV~Enl~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+. ..+..++|||.|. -+.+.+|+.||+.+....+.| .-+...+.++.+.+++++++...... ....
T Consensus 326 ~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~----~~~a 401 (501)
T COG3845 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP----DAPA 401 (501)
T ss_pred CCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC----Ccch
Confidence 21 2345699999985 467889999999987643211 12456777888999999998863221 1235
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+.||||++||+-+||+|.++|++|+..+||-|||..+...|.+.|.++++.|+.|++++-++. +++.+||||.||++|+
T Consensus 402 ~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~Gr 480 (501)
T COG3845 402 RSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYEGR 480 (501)
T ss_pred hhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeCCc
Confidence 789999999999999999999999999999999999999999999999999999999999975 6899999999999999
Q ss_pred EEEecChHH
Q 006571 374 LLYFGKASE 382 (640)
Q Consensus 374 iv~~G~~~~ 382 (640)
++...++++
T Consensus 481 i~~~~~~~~ 489 (501)
T COG3845 481 IVGIVPPEE 489 (501)
T ss_pred eeccccccc
Confidence 999888765
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-26 Score=228.14 Aligned_cols=164 Identities=17% Similarity=0.270 Sum_probs=125.0
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHH----cCCCCCCcccEEEECCEeCC-hhccCcEEEEccCC-----CCCCCCC
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLS----GRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD-----VLFPHLT 245 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~----G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~-----~l~~~lT 245 (640)
.++++.+| +++|+||||||||||+++|. |... +.+|.+..+...+. ...+..|++++|++ .....+|
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~--~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC--cccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 45667788 99999999999999999995 7543 33455542222222 23456799999987 4455668
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH------HHHHHHHhhCCCEEEE
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR------VCIGNEIIINPSLLFL 319 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR------v~IA~aL~~~P~iLlL 319 (640)
+.||+.+.. .. .+++.+ + ..++.||+||||| ++||++++.+|++++|
T Consensus 93 ~~~~~~~~~---------~~----~~~~~~---------~-----~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH---------QG----ESNWPL---------L-----DMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec---------hH----HHHHHH---------h-----cCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 888886531 11 122233 2 2356899999996 7899999999999999
Q ss_pred eCCCCCCCHHHHH-HHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 320 DEPTSGLDSTTAL-RIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 320 DEPTsgLD~~s~~-~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||||++||+..+. .+.+.|++++++ |.|||++||++. ....||+++.|.+
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence 9999999999999 999999999876 889999999964 3567999999965
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=257.66 Aligned_cols=126 Identities=29% Similarity=0.458 Sum_probs=106.3
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC---CEEEE
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlL 319 (640)
+||.|++.|...+. . ..+..+.++.+||... .+. .+..||||||||+.||++|+.+| +++||
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~-----~~~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQ-----PATTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccC-----CcccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999988865431 1 1234578899999752 333 34689999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
||||+|||+.....+++.|+++.++|.|||+++|++.. ...||+|+.| ++|++++.|+++++..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~--i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~ 927 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDV--IKTADWIIDLGPEGGDGGGEIVATGTPEEVAK 927 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH--HHhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999998889999999999753 4679999999 6899999999998753
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.1e-25 Score=247.11 Aligned_cols=197 Identities=28% Similarity=0.455 Sum_probs=156.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
...|+++||+..-+ ..+..|++.++.++|||-+.|.||||||||||+|+|+|. . |--+|+|.+-
T Consensus 390 ~~~i~~~nl~l~~p-------~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGL-W-P~g~G~I~~P------- 453 (604)
T COG4178 390 DHGITLENLSLRTP-------DGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL-W-PWGSGRISMP------- 453 (604)
T ss_pred cceeEEeeeeEECC-------CCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhcc-C-ccCCCceecC-------
Confidence 35799999998742 345899999999999999999999999999999999994 3 3345776543
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc-CccCCcCCHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG-GSFVRGVSGGERKRVC 305 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg-~~~~~~LSGGqrqRv~ 305 (640)
....+-|+||.|.+... |.||-|.|+... ... .++.+.++|.++||++..+..-+ ++.-+.||+||||||+
T Consensus 454 ~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~----~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRla 525 (604)
T COG4178 454 ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDF----SDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLA 525 (604)
T ss_pred CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCC----ChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHH
Confidence 12458999999998876 999999986421 112 34557788889999876654322 1223569999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+||.|+++|++++|||.||+||+.++..+++.+++-. .+.|||-|.|++. +..+.++.+-+.
T Consensus 526 fARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 526 FARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999998743 3889999999965 456666655554
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=248.11 Aligned_cols=125 Identities=27% Similarity=0.461 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhh---CCCEEE
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIII---NPSLLF 318 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~---~P~iLl 318 (640)
.+||.|.+.|...+. . ..+..++++.+||... .+. .+..|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~-----~~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQ-----PATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcC-----ccccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367777777754321 0 1134577888999642 333 357899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHH
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEA 383 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~ 383 (640)
|||||+|||+.....+++.|+++.++|.|||+++|++.. + ..||+|++| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~-i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV-I-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999999999999999998889999999999753 4 679999999 79999999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=234.12 Aligned_cols=215 Identities=24% Similarity=0.359 Sum_probs=145.3
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
...+.++|+++++ ..+.+++|++|++.+|+.++|+|||||||||+|++|.|+..+.+..=.++.-.+++...
T Consensus 73 s~dvk~~sls~s~--------~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps 144 (614)
T KOG0927|consen 73 SRDVKIESLSLSF--------HGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPS 144 (614)
T ss_pred cccceeeeeeecc--------CCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCc
Confidence 3468999999987 46789999999999999999999999999999999999876433222222222222111
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHh-ccC----------------CCCccHHHHHHHHHHHHHHcCC-Cccccccc
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAAL-LRL----------------PNTLTKQQKEKRAIDVINELGL-ERCQDTMI 288 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~-~~~----------------~~~~~~~~~~~~v~~~l~~lgL-~~~~~t~v 288 (640)
...-+-+|.+ +....+.-+.+-.. +.. ...+..+..+.++..++..+|. ++..+.
T Consensus 145 ~~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k-- 217 (614)
T KOG0927|consen 145 EKQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDK-- 217 (614)
T ss_pred hHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHH--
Confidence 0000111110 00011111111000 000 0012223334455566666654 333333
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCcHHHhccCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+.+||||+|.|+++||+|..+|++|+|||||++||..+..-+-+.|.+. .+ ++|+++|.- +.+-..|.+|+
T Consensus 218 ---~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~---d~~~lVi~sh~Q-Dfln~vCT~Ii 290 (614)
T KOG0927|consen 218 ---KVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY---DRIILVIVSHSQ-DFLNGVCTNII 290 (614)
T ss_pred ---HhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc---cCceEEEEecch-hhhhhHhhhhh
Confidence 45789999999999999999999999999999999999998888888764 33 899999984 45778999999
Q ss_pred EEcCCe-EEEecChHHH
Q 006571 368 LLGKGS-LLYFGKASEA 383 (640)
Q Consensus 368 vL~~G~-iv~~G~~~~~ 383 (640)
-|++++ +.|.|+.++.
T Consensus 291 ~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 291 HLDNKKLIYYEGNYDQY 307 (614)
T ss_pred eecccceeeecCCHHHH
Confidence 999999 6777876654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=234.96 Aligned_cols=203 Identities=22% Similarity=0.343 Sum_probs=158.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~ 226 (640)
++.+.+.||+|.|. ++..++++++|-|.+++.+|+|||||+|||||||++.|.+. +..|.|.-.
T Consensus 387 ~pvi~~~nv~F~y~-------~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~------- 450 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYS-------DNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRH------- 450 (614)
T ss_pred CCeEEEeccccCCC-------CcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--ccccccccc-------
Confidence 45799999999983 22379999999999999999999999999999999999765 457877533
Q ss_pred ccCcEEEEccC--CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 227 LKSKIGFVTQD--DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 227 ~~~~i~yV~Q~--~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
...++++..|+ +.+--+.++-|++.-.. + +....+.+..+|..+||....++ ...++||+|||+||
T Consensus 451 ~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~----~p~~~LS~Gqr~rV 518 (614)
T KOG0927|consen 451 SHNKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQV----VPMSQLSDGQRRRV 518 (614)
T ss_pred ccccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCccccc----cchhhcccccchhH
Confidence 22345555664 33333567888776321 1 12345667889999999844433 24579999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE-EEecChH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKAS 381 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~~ 381 (640)
.+|+.++..|.||+|||||+|||..+...+-+.|.+. .-+||+++||.. .+-+.+++|.+..+|.+ .+.|...
T Consensus 519 lFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 519 LFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCccHH
Confidence 9999999999999999999999999988888888764 348999999965 47788999999998765 5667543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=209.92 Aligned_cols=229 Identities=21% Similarity=0.321 Sum_probs=175.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCC---
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS--- 224 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~--- 224 (640)
|.++|++..+.. +.+...++++||+++..||+-++||.||||||-..|+|+|...+.- +.-+..+++.++-
T Consensus 4 LDIrnL~IE~~T----sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~ 79 (330)
T COG4170 4 LDIRNLTIEFKT----SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79 (330)
T ss_pred ccccceEEEEec----CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC
Confidence 556777776633 3355679999999999999999999999999999999999665321 2344556666542
Q ss_pred h-h----ccCcEEEEccCCC--CCCCCCHHHHHHHHHhccCCCC---ccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006571 225 K-S----LKSKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNT---LTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~-~----~~~~i~yV~Q~~~--l~~~lTV~Enl~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (640)
. + .-+.|+++||+|. |-|.-+|...|.-....+.-+. -.-..++.++-++|..+|+.+..|-+ ..++.
T Consensus 80 Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM--~SYP~ 157 (330)
T COG4170 80 PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM--RSYPY 157 (330)
T ss_pred hHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH--HhCcc
Confidence 1 2 2245889999985 4444444433322111110000 00123566788999999999877643 45788
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+|--||-|+|.||.|++.+|++|+.||||+++|+.++.+|.++|.++.+ +|.||++++||+.. +.+.||+|-||.-|+
T Consensus 158 ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~-is~W~d~i~VlYCGQ 236 (330)
T COG4170 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQM-ISQWADKINVLYCGQ 236 (330)
T ss_pred hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHH-HHHHhhheEEEEecc
Confidence 9999999999999999999999999999999999999999999999975 48999999999764 789999999999999
Q ss_pred EEEecChHHHHH
Q 006571 374 LLYFGKASEAMA 385 (640)
Q Consensus 374 iv~~G~~~~~~~ 385 (640)
-++.++.+++++
T Consensus 237 ~~ESa~~e~l~~ 248 (330)
T COG4170 237 TVESAPSEELVT 248 (330)
T ss_pred cccccchhHHhc
Confidence 999999999874
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=203.99 Aligned_cols=167 Identities=20% Similarity=0.216 Sum_probs=121.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE--CCEeCCh-----hccCcEEEEccCCCCCCCCC
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY--NDHPYSK-----SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~--~G~~~~~-----~~~~~i~yV~Q~~~l~~~lT 245 (640)
++++++++.+| +.+|+||||||||||+.+|...+ .|+... .|..... .....|.+++|+..++++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l-----~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~-- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGL-----GGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN-- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHh-----cCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCC--
Confidence 46788888888 88999999999999999997422 122111 1221111 123458888888766541
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH----hhCCCEEEEeC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI----IINPSLLFLDE 321 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDE 321 (640)
. .. ....+.++++++. .+..++ .++.||+|||||++||++| +.+|++++|||
T Consensus 84 ------------~---~~-~~~~~~~~~~l~~---~~~~~~-----~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 84 ------------P---LC-VLSQDMARSFLTS---NKAAVR-----DVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred ------------c---CC-HHHHHHHHHHhcc---ccccCC-----cccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 0 11 1123456677765 344443 4578999999999999999 58999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC---CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEA---GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~---g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
||+|||+.+...+.+.|++++++ +.|||+++|++.. +.. +|+|.+|..++
T Consensus 140 P~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 140 FDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 99999999999999999998653 3589999999764 444 59999998754
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-22 Score=213.31 Aligned_cols=174 Identities=27% Similarity=0.374 Sum_probs=135.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
-|.-=.++|..||+++++||||-||||+.++|+|.+. +++|. .. .-+|+|=||--.--...||.+.|.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc------cceEeecceeecCCCCCcHHHHHH
Confidence 3444456677789999999999999999999999765 45675 11 234889999643334569999887
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
-....+... .-...++++-|.|++..+..+ .+|||||.|||+||.+|.+++++++||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 554322111 112346777788888777654 68999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 332 LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 332 ~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
..+-+.++++... ++|.+++-||..- +--+.||++|.+
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999999864 8899999999753 445679988875
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-22 Score=216.63 Aligned_cols=204 Identities=21% Similarity=0.341 Sum_probs=156.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+|++|+..-| ..+..+.+|+||+|..|+-+.|.||||||||+|+++|+|. . |..+|.+..-.+.-.
T Consensus 432 n~i~~e~v~l~tP------t~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggL-W-p~~~G~l~k~~~~~~--- 500 (659)
T KOG0060|consen 432 NAIEFEEVSLSTP------TNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL-W-PSTGGKLTKPTDGGP--- 500 (659)
T ss_pred ceEEeeeeeecCC------CCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcc-c-ccCCCeEEecccCCC---
Confidence 4799999998742 2245678889999999999999999999999999999984 3 346888865433211
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccc------ccCccCCcCCHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM------IGGSFVRGVSGGER 301 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~------vg~~~~~~LSGGqr 301 (640)
+.+-||||.|.+--. |.||.+.|+...-.+ ..+...++++.+.|+.++|.|..+.. +--+.-..||+||+
T Consensus 501 -~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEq 576 (659)
T KOG0060|consen 501 -KDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQ 576 (659)
T ss_pred -CceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHH
Confidence 458899999987655 999999987322111 11222344566677777666544322 11122356999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||++.||-+.++|++-||||.||++|...+..+.+.+++ .|.|.|-|.|+.+ +.+.=|.++-|+.
T Consensus 577 QRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 577 QRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE---MGITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH---cCCeEEEeccHHH--HHhhhhEEEEecC
Confidence 999999999999999999999999999999999988875 4999999999976 4566688888875
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-23 Score=211.25 Aligned_cols=180 Identities=17% Similarity=0.211 Sum_probs=118.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-C-Ch---------hccCcEEEEccCCCC-CCCCCHHH
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-Y-SK---------SLKSKIGFVTQDDVL-FPHLTVKE 248 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-~-~~---------~~~~~i~yV~Q~~~l-~~~lTV~E 248 (640)
.++ +++|+||||||||||+++|++.+. + ..|++..++.. + .. ...-.+.|..|++.. .-..++.+
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~-~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~ 97 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-E-KSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITG 97 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhC-C-CcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEEC
Confidence 344 999999999999999999998654 2 24655543321 0 00 111223444444221 00112221
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccc---------cccC--------ccCCcCCHHHHHHHHHHHHHh
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT---------MIGG--------SFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t---------~vg~--------~~~~~LSGGqrqRv~IA~aL~ 311 (640)
... ..+.... ....+.++++++.+|+...... .+.+ ..+..||||||||++||++++
T Consensus 98 ~~~---~~~ingk---~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~ 171 (247)
T cd03275 98 GSS---SYRINGK---VVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA 171 (247)
T ss_pred Cce---EEEECCE---EecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence 110 0011110 1123345678888888532111 1111 123789999999999999998
Q ss_pred hC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 312 IN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 312 ~~----P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
.+ |+++||||||+|||+..+..+.+.|++++++|.|||++||++ ++.+.||++++|.+
T Consensus 172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~ 233 (247)
T cd03275 172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR 233 (247)
T ss_pred HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence 75 899999999999999999999999999987799999999994 35688999999975
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=217.40 Aligned_cols=202 Identities=23% Similarity=0.286 Sum_probs=141.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|...|++..| +.+.+|++-++++..|..++|+|+||+|||||||+|+. |.| .+.+..++.
T Consensus 79 ~Di~~~~fdLa~--------G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~--------~~v--~~f~veqE~ 140 (582)
T KOG0062|consen 79 KDIHIDNFDLAY--------GGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN--------GQV--SGFHVEQEV 140 (582)
T ss_pred cceeeeeeeeee--------cchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh--------cCc--CccCchhhe
Confidence 368888888888 57889999999999999999999999999999999994 222 222332232
Q ss_pred cCcEEEEccC-CCCCCCCCHHHHHHHHHhccCCCCccHH-HHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQ-QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
+. -+++-. +.+-.+..+.+-|.--. .+... ..++....+|..+|..+.... ...++||||-|-|++
T Consensus 141 ~g--~~t~~~~~~l~~D~~~~dfl~~e~------~l~~~~~l~ei~~~~L~glGFt~emq~----~pt~slSGGWrMrla 208 (582)
T KOG0062|consen 141 RG--DDTEALQSVLESDTERLDFLAEEK------ELLAGLTLEEIYDKILAGLGFTPEMQL----QPTKSLSGGWRMRLA 208 (582)
T ss_pred ec--cchHHHhhhhhccHHHHHHHHhhh------hhhccchHHHHHHHHHHhCCCCHHHHh----ccccccCcchhhHHH
Confidence 21 122221 12222323333322111 11111 223334447888888654322 345789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE-EEecChHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL-LYFGKASEA 383 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i-v~~G~~~~~ 383 (640)
+||||..+|+||||||||+.||..+..-+.+.|+.+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|..++.
T Consensus 209 LARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~F 283 (582)
T KOG0062|consen 209 LARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQF 283 (582)
T ss_pred HHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHH
Confidence 999999999999999999999999988888888764 4799999999 5556777888888877665 466665543
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-21 Score=187.84 Aligned_cols=210 Identities=22% Similarity=0.302 Sum_probs=158.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|++.++.|+|+. ..+++-|+|++++.|....++|.||||||||||+|+|.-. ...|.|.++|++.-.
T Consensus 12 ~aievsgl~f~y~~-------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm--v~~~~v~VlgrsaFhDt 82 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV-------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM--VGGGVVQVLGRSAFHDT 82 (291)
T ss_pred ceEEEeccEEeccc-------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc--ccCCeEEEcCcCccccc
Confidence 36999999999942 3489999999999999999999999999999999999533 235899999986421
Q ss_pred -------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCcc
Q 006571 226 -------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSF 292 (640)
Q Consensus 226 -------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~ 292 (640)
++.+.+++-- +-.+..++++.+.| |+... . +.++ -+.+++.+.+.-.. .
T Consensus 83 ~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~g-----~-dp~R---re~LI~iLDIdl~W-------R 144 (291)
T KOG2355|consen 83 SLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVGG-----D-DPER---REKLIDILDIDLRW-------R 144 (291)
T ss_pred cccccCceeEecccccccccccc-cccccccccHHHHH-hhccC-----C-ChhH---hhhhhhheeccceE-------E
Confidence 2333333333 22233355665544 44321 1 1233 34455655553211 2
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
.+.+|-|||+||.|++.|++.-++|+|||-|--||..++..+++.|++-++ +|.|||..||-... +.....+++.|++
T Consensus 145 mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~yi~~ 223 (291)
T KOG2355|consen 145 MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVYIKS 223 (291)
T ss_pred EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEEecC
Confidence 357999999999999999999999999999999999999999999999875 48999999999764 6788999999999
Q ss_pred CeEEEecChHHHHH
Q 006571 372 GSLLYFGKASEAMA 385 (640)
Q Consensus 372 G~iv~~G~~~~~~~ 385 (640)
|+++..-+.+++.+
T Consensus 224 Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 224 GKLVDNLKYQKIKE 237 (291)
T ss_pred Ceeeeccccchhhh
Confidence 99998666555543
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-22 Score=207.42 Aligned_cols=193 Identities=26% Similarity=0.398 Sum_probs=150.9
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
.|+.|-++||+|.|+ +.++++++++|-|.=-..+|||||||.||||||++|.|.+. |..|+.. +
T Consensus 583 ~PPvLGlH~VtFgy~-------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~R-------K 646 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP-------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELR-------K 646 (807)
T ss_pred CCCeeecccccccCC-------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhh-------c
Confidence 356799999999984 56789999999999999999999999999999999999764 3467643 3
Q ss_pred hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 ~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
..|-+||+..|+. .|-..-|.-|.|.-... ++. +.+...|-.+||...++|. .+..||||||-|
T Consensus 647 nhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FN------lpy----q~ARK~LG~fGL~sHAHTi----kikdLSGGQKaR 712 (807)
T KOG0066|consen 647 NHRLRIGWFDQHANEALNGEETPVEYLQRKFN------LPY----QEARKQLGTFGLASHAHTI----KIKDLSGGQKAR 712 (807)
T ss_pred cceeeeechhhhhHHhhccccCHHHHHHHhcC------CCh----HHHHHHhhhhhhhhccceE----eeeecCCcchHH
Confidence 3455699999874 45555677777764322 222 2345678889999888885 467899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
|++|.--+..|+||||||||++||.++...+-+.|++. .-.||+++||-.. +.+.--.++|+.+-
T Consensus 713 ValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 713 VALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQ 777 (807)
T ss_pred HHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccC
Confidence 99999999999999999999999999988888888765 3489999999543 33333355666553
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=188.98 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=68.7
Q ss_pred cCCcCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEeCCCCcHHHhccC-
Q 006571 292 FVRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-G-KTVVTTIHQPSSRLFHKFD- 364 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g-~TvI~~tH~~~~~i~~~~D- 364 (640)
.+..||||||||+.++++| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. ..+.+|
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~ 201 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEK 201 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCc
Confidence 4568999999998877554 5799999999999999999999999999999776 5 589999999754 446665
Q ss_pred -EEEEEcCCe
Q 006571 365 -KLILLGKGS 373 (640)
Q Consensus 365 -~i~vL~~G~ 373 (640)
+|++|++|+
T Consensus 202 ~~v~~l~~g~ 211 (213)
T cd03277 202 MTVLCVYNGP 211 (213)
T ss_pred eEEEEEecCc
Confidence 788888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=203.26 Aligned_cols=205 Identities=23% Similarity=0.314 Sum_probs=156.6
Q ss_pred CCeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 146 ~~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
.++.+++.+|+|.|.. ... +++.++++.++.-+..+++|+||+||||++|++.|.+. +..|.+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~----- 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----SEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP----- 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----cch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc-----
Confidence 3557999999998731 112 79999999999999999999999999999999998654 3467766543
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
|.+|+|-.|...=+-.+.|.+-- +....+ | ..++ +.++.-+..+||+... ....+.+||||||=||+
T Consensus 426 --r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~----ee~r~hl~~~Gl~g~l----a~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 426 --RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTE----EEIRRHLGSFGLSGEL----ALQSIASLSGGQKSRVA 492 (582)
T ss_pred --cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCH----HHHHHHHHhcCCCchh----hhccccccCCcchhHHH
Confidence 56799999975544344554332 222332 2 2233 3455678889996422 22335789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE-ecCh
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY-FGKA 380 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~-~G~~ 380 (640)
+|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||+|||+. ..+...|+.+.+.++|++.- .|..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 999999999999999999999999999988888865 34899999994 45778999999999999853 3443
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-20 Score=187.23 Aligned_cols=153 Identities=23% Similarity=0.215 Sum_probs=110.1
Q ss_pred ceeceEEEEeCCe-EEEEECCCCCcHHHHHHHHH-cCCCCCCccc-EEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 172 ILNGITGSVNPGE-VLALMGPSGSGKTTLLNLLS-GRLMEPTVGG-SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 172 iL~~vs~~i~~Ge-~~aIvGpsGsGKSTLl~~L~-G~~~~~~~~G-~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
-..++|+++.+|+ +++|.|||||||||||++|+ +.+. ...| .+-.. -...++|+.|....+
T Consensus 16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~--~~~G~~vp~~-------~~~~~~~~~~~~~~l------- 79 (200)
T cd03280 16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM--AQSGLPIPAA-------EGSSLPVFENIFADI------- 79 (200)
T ss_pred ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH--HHcCCCcccc-------ccccCcCccEEEEec-------
Confidence 3457899999995 89999999999999999998 1110 0011 00000 001234444432111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
+..+..+ .....+|+||||++.|+++ +.+|+++++||||+|||+
T Consensus 80 ------------------------------g~~~~l~-----~~~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~ 123 (200)
T cd03280 80 ------------------------------GDEQSIE-----QSLSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDP 123 (200)
T ss_pred ------------------------------Cchhhhh-----cCcchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCH
Confidence 1111111 1124799999999999988 489999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 329 ~s~~~i~-~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
.....+. ..++++.+.|.|+|++||+. ++.+.||++++|++|++++.+
T Consensus 124 ~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 124 VEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999996 46888877789999999983 567899999999999998874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=176.72 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 296 VSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|+++++.|.|+|+++|++. ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 9999999999999996 699999999999999999999999999999877899999999964 4578999999976
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.7e-20 Score=196.72 Aligned_cols=170 Identities=31% Similarity=0.477 Sum_probs=128.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-------------hc--------c--CcEEEEc
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-------------SL--------K--SKIGFVT 235 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-------------~~--------~--~~i~yV~ 235 (640)
..++|++++|+||||-||||-+|+|+|.+.+ . =|+ +++.|-.+ .+ | .++-||.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~P-N-LG~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd 171 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKP-N-LGR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVD 171 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCcccc-C-CCC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHH
Confidence 3579999999999999999999999998753 2 232 23322110 01 0 1122332
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS 315 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~ 315 (640)
--|..+.. ||.|-|.-. ...-..+++++.++|.+..|..+ ..|||||-||++||.+++++++
T Consensus 172 ~iPk~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v-----~~LSGGELQr~aIaa~l~rdAD 233 (591)
T COG1245 172 LIPKVVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDV-----SELSGGELQRVAIAAALLRDAD 233 (591)
T ss_pred HHHHHhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhh-----hhcCchHHHHHHHHHHHhccCC
Confidence 23334433 777766421 11235788999999998887654 6899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++++|||||-||...+...-+.++++++.+++||++-||+.- +--++|-|.++..
T Consensus 234 vY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLav-LD~lsD~vhI~YG 288 (591)
T COG1245 234 VYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAV-LDYLSDFVHILYG 288 (591)
T ss_pred EEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHH-HHHhhheeEEEec
Confidence 999999999999999999999999999889999999999763 4456898888864
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-19 Score=179.34 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=102.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.|++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. -.+++|.+.+|+.+|+.|
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d 78 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-------LAQAGAPVCA-----SSFELPPVKIFTSIRVSD 78 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-------HHHcCCEEec-----CccCcccceEEEeccchh
Confidence 346778887665 79999999999999999999998432 2234444422 136778888999999999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
|+.++.. ....+ ..++.++++.+++ .+|+++++||||+|||+
T Consensus 79 ~l~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~ 120 (199)
T cd03283 79 DLRDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNS 120 (199)
T ss_pred ccccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCH
Confidence 9987531 11222 2456777776542 79999999999999999
Q ss_pred HHHHHHH-HHHHHHHHCCCEEEEEeCCCC
Q 006571 329 TTALRIV-QMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 329 ~s~~~i~-~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.....+. ..++.+.+.|.|+|++||++.
T Consensus 121 ~~~~~l~~~ll~~l~~~~~tiiivTH~~~ 149 (199)
T cd03283 121 RERQAASAAVLKFLKNKNTIGIISTHDLE 149 (199)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHH
Confidence 9988775 468888777899999999965
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=212.53 Aligned_cols=200 Identities=24% Similarity=0.380 Sum_probs=144.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCCC--CCcccEEEECCEeCCh--------------hccC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLME--PTVGGSITYNDHPYSK--------------SLKS 229 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G----~~~~--~~~~G~I~~~G~~~~~--------------~~~~ 229 (640)
.=|+||+.+|+-|.+++|.|.||||||||++-.. - .+.. ....--|.+|-.|+.+ .+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3589999999999999999999999999997443 1 0100 0123346777666521 0000
Q ss_pred ----------------c---------------EEEEccCCCCCC--------------------------------CCCH
Q 006571 230 ----------------K---------------IGFVTQDDVLFP--------------------------------HLTV 246 (640)
Q Consensus 230 ----------------~---------------i~yV~Q~~~l~~--------------------------------~lTV 246 (640)
. -|++.=+-.++| .|||
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 0 111111111111 3677
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC---CCEEEEeCCC
Q 006571 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPT 323 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPT 323 (640)
.|.+.|... ..+-.+.-+.|.++||.... +| +....|||||.||+-||..|..+ +.+++|||||
T Consensus 1664 ~ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt 1730 (1809)
T PRK00635 1664 EEVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIA 1730 (1809)
T ss_pred HHHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCC
Confidence 777666421 11233456678888986432 23 44567999999999999999876 7899999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc------CCeEEEecChHHHHH
Q 006571 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG------KGSLLYFGKASEAMA 385 (640)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~------~G~iv~~G~~~~~~~ 385 (640)
+||++.....+++.|++|.+.|.|||++.|++. +.+.||.|+-|. .|+|++.|+|+++.+
T Consensus 1731 ~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1731 TSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 999999999999999999999999999999964 667899999994 479999999999864
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.3e-18 Score=191.65 Aligned_cols=128 Identities=28% Similarity=0.485 Sum_probs=103.4
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC---CEEEE
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP---SLLFL 319 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P---~iLlL 319 (640)
.|||.|...|.... + .-.+..+.|..+||.-. .+| +....|||||.|||-+|.+|.... -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi---~LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYI---KLG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceE---ecC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 35666666665321 1 12334456677888532 233 455789999999999999999987 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
||||+||-.....++++.|.+|.++|.|||+|-|.+. +.+.||.|+=| +.|+|+..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999975 67899999998 3589999999999974
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=182.14 Aligned_cols=153 Identities=22% Similarity=0.216 Sum_probs=116.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (640)
.+.+.+|+++++.+|++++|.||||+|||||+++++ .. .+..++| |||.+...++
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~-~~------------------~~la~~g~~vpa~~~~~~----- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG-VI------------------VLMAQIGCFVPCDSADIP----- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH-HH------------------HHHHHhCCCcCcccEEEe-----
Confidence 456899999999999999999999999999999998 21 1122333 5665432221
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCC---
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEP--- 322 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEP--- 322 (640)
.+++++..+++.+.. .+++|.|+++++.+++++ +.+|+++|||||
T Consensus 72 ----------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~g 121 (222)
T cd03285 72 ----------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRG 121 (222)
T ss_pred ----------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCC
Confidence 022334455665322 257999999999999999 899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 323 TSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|++||+.+.... .++.+.+ .|.++|++||+ .++.++||++..+++|++...+.
T Consensus 122 T~~lD~~~~~~~--il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 122 TSTYDGFGLAWA--IAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CChHHHHHHHHH--HHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999987543 3344443 48899999996 45788999999999999987764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-19 Score=191.80 Aligned_cols=185 Identities=22% Similarity=0.359 Sum_probs=133.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|.++||-.-- + ....+...++|.|+||--+.|.||||||||+|+++|.|. . |...|.... ..+
T Consensus 481 gI~lenIpvIt------P-~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggL-W-Pvy~g~L~~-------P~~ 544 (728)
T KOG0064|consen 481 GIILENIPVIT------P-AGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL-W-PVYNGLLSI-------PRP 544 (728)
T ss_pred ceEEecCceec------c-CcceeecceeEEecCCceEEEECCCCccHHHHHHHHhcc-C-cccCCeeec-------CCC
Confidence 37777776542 2 234588999999999999999999999999999999994 3 333343221 123
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhcc--CCCCccHHHHHHHHHHHHHHcCCCccccccccC----ccCCcCCHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLR--LPNTLTKQQKEKRAIDVINELGLERCQDTMIGG----SFVRGVSGGERK 302 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~----~~~~~LSGGqrq 302 (640)
.++-|+||.|.+- .-|.+|.+-|....- ..++.. ++....+|+.+.|++......|= ..-.-|||||||
T Consensus 545 ~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHH
Confidence 4599999999876 458888887642100 001112 22345555655555443332221 112359999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
|+++||.+.++|+.-+|||.||+..+..+..+.+..++ .|.+.|-++|+|+-
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999999999999999999999999999999988765 49999999999873
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=180.51 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=68.8
Q ss_pred cCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.|||||+||++||++++. +|+++||||||++||+.....+.+.|+++.+ +.|+|+++|++. +...||++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 499999999999997654 9999999999999999999999999999865 789999999975 458999999998
Q ss_pred CCe
Q 006571 371 KGS 373 (640)
Q Consensus 371 ~G~ 373 (640)
+|.
T Consensus 247 ~~~ 249 (276)
T cd03241 247 KEV 249 (276)
T ss_pred Eec
Confidence 864
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-18 Score=183.68 Aligned_cols=205 Identities=26% Similarity=0.410 Sum_probs=149.3
Q ss_pred eEEEEeEEEEEeec----cc--------------cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC-
Q 006571 149 YLKFTDVTYKVILK----GM--------------TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME- 209 (640)
Q Consensus 149 ~l~~~~vs~~~~~~----~~--------------~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~- 209 (640)
.+.|++++..+.+. +. .......+|+|||++|+||++++|+|+|||||||||++|.|....
T Consensus 357 p~~~~~v~k~faS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~ 436 (593)
T COG2401 357 PIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR 436 (593)
T ss_pred ccccceeeeeeeeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcc
Confidence 47788887776431 00 112346799999999999999999999999999999999995421
Q ss_pred -----CCcccEEEECCEeCChhccCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc
Q 006571 210 -----PTVGGSITYNDHPYSKSLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283 (640)
Q Consensus 210 -----~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 283 (640)
.|++|.|.+--.. ..+.+|-+. .-|..-|+.|.+.- .+.+ -..+.++|...||.+-
T Consensus 437 ~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~f~~~tilehl~s-----~tGD------~~~AveILnraGlsDA 498 (593)
T COG2401 437 GEEKYRPDSGKVEVPKNT-------VSALIPGEYEPEFGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDA 498 (593)
T ss_pred cccccCCCCCceeccccc-------hhhccCcccccccCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchh
Confidence 1346766543221 124455432 22335577777642 1111 1235678888898753
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~ 362 (640)
.- -....+.||-|||.|+.||.++...|.+++.||--+.||+.++..+.+-|.+++++ |.|++++||+|.- .-.+
T Consensus 499 vl---yRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv-~~AL 574 (593)
T COG2401 499 VL---YRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV-GNAL 574 (593)
T ss_pred hh---hhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHH-Hhcc
Confidence 21 12345789999999999999999999999999999999999999999999999864 9999999999753 3344
Q ss_pred -cCEEEEEcCCeEE
Q 006571 363 -FDKLILLGKGSLL 375 (640)
Q Consensus 363 -~D~i~vL~~G~iv 375 (640)
-|+++++.=|.+.
T Consensus 575 ~PD~li~vgYg~v~ 588 (593)
T COG2401 575 RPDTLILVGYGKVP 588 (593)
T ss_pred CCceeEEeeccccc
Confidence 4999988777653
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-18 Score=164.39 Aligned_cols=75 Identities=28% Similarity=0.413 Sum_probs=67.9
Q ss_pred cCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 295 GVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+||+||+||++||++|.. +|+++|+|||++|+|+.....+.+.+.++.+++.++|++||++. +...+|+++.|+
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~ 154 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIK 154 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEE
Confidence 499999999999999987 78999999999999999999999999998666889999999964 457799999986
Q ss_pred C
Q 006571 371 K 371 (640)
Q Consensus 371 ~ 371 (640)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 4
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=195.95 Aligned_cols=136 Identities=23% Similarity=0.411 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHhccCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 242 PHLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
..+||.|.+.|.-.+..+.. .. -.+..++++ .++.+||.+. .|+ .+..|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r-----~~~~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCC-----chhhCCHHHHHHHHHHHHHhhCC
Confidence 36899999998544322110 00 012233443 6778888754 454 35689999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 315 --~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
++++|||||+|||+.....+++.|+++++.|.|||+++|++.. + ..||+|++| ++|++++.|+++++..
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~ 585 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK 585 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence 9999999999999999999999999998889999999999763 4 569999999 9999999999998743
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=193.59 Aligned_cols=134 Identities=24% Similarity=0.401 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHhccCCCCccH------HHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC-
Q 006571 243 HLTVKETLTYAALLRLPNTLTK------QQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP- 314 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P- 314 (640)
.|||.|.+.|...+..+..... .+..+++ +.+..+||... .+ +.+.+|||||+|||.||++|..+|
T Consensus 434 ~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~-----r~~~tLSGGE~QRv~LA~aL~~~~~ 507 (924)
T TIGR00630 434 ELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLS-----RAAGTLSGGEAQRIRLATQIGSGLT 507 (924)
T ss_pred cCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccC-----CCcCcCCHHHHHHHHHHHHHhhCCC
Confidence 6899999988765432210000 0111122 33566787543 33 345789999999999999999986
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 315 -SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 315 -~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
+++||||||+|||+.....+++.|+++.++|.|||+++|++. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 508 ~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 508 GVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999965 34 589999999 899999999998874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-18 Score=181.02 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=150.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|.++|.+.+. ..+.++.|.|++|--|..+++|||||-||||||+.|+.|-..-|..=.|++..+.+-.
T Consensus 263 ~DIKiEnF~ISA--------~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISA--------QGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADS 334 (807)
T ss_pred ccceeeeeeeec--------ccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecC
Confidence 368888888775 4577999999999999999999999999999999999875432223345655544310
Q ss_pred ------hc---cCcEEEEccCCCC-----CCCCCHHHHHHHH-HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccC
Q 006571 226 ------SL---KSKIGFVTQDDVL-----FPHLTVKETLTYA-ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG 290 (640)
Q Consensus 226 ------~~---~~~i~yV~Q~~~l-----~~~lTV~Enl~~~-~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~ 290 (640)
-+ .++..++..+..| -...|+.|-+.-. ..+|- +-....+.++..+|.-+|.+.-.. +
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELra---iGA~sAEarARRILAGLGFskEMQ----~ 407 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRA---IGADSAEARARRILAGLGFSKEMQ----E 407 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHH---hccccchhHHHHHHhhcCCChhHh----c
Confidence 00 1111221111111 1234666665422 22221 112223456778888888864332 2
Q ss_pred ccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 291 SFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
++...+|||-|-||++||||...|-+|.|||||+.||..+..-+-+.|+.+. +|.++++||-. .+-..|..|+.|+
T Consensus 408 rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VCtdIIHLD 483 (807)
T KOG0066|consen 408 RPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVCTDIIHLD 483 (807)
T ss_pred CCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHHHHHhhhh
Confidence 3456799999999999999999999999999999999999888888887764 59999999965 4778899999999
Q ss_pred CCeEE-EecCh
Q 006571 371 KGSLL-YFGKA 380 (640)
Q Consensus 371 ~G~iv-~~G~~ 380 (640)
+-++- |.|..
T Consensus 484 ~qkLhyYrGNY 494 (807)
T KOG0066|consen 484 NQKLHYYRGNY 494 (807)
T ss_pred hhhhhhhcchH
Confidence 88874 45654
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=166.49 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.3
Q ss_pred CCcCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
..-+|+||||+++||++|+ .+|++++|||||++||+..+..+.+.|+++ +.+ ++++|+.. .+...|
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~-ii~~~~~~-~~~~~~ 255 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQT-FVTTTDLA-DFDALW 255 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCE-EEEeCCch-hccchh
Confidence 3458999999999999985 799999999999999999999999999765 334 45555433 345566
Q ss_pred ---CEEEEEcCCeE
Q 006571 364 ---DKLILLGKGSL 374 (640)
Q Consensus 364 ---D~i~vL~~G~i 374 (640)
++++.+++|++
T Consensus 256 ~~~~~i~~l~~g~i 269 (270)
T cd03242 256 LRRAQIFRVDAGTL 269 (270)
T ss_pred ccCccEEEEeCcEE
Confidence 78999999986
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-17 Score=162.62 Aligned_cols=155 Identities=15% Similarity=0.124 Sum_probs=105.4
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
.++++.+|++++|+|||||||||||++|++.... ...|.. . ...+..++|..|....+ ...+++
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~-~~~g~~------~-~~~~~~i~~~dqi~~~~---~~~d~i----- 85 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLL-AQIGCF------V-PAESASIPLVDRIFTRI---GAEDSI----- 85 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHH-HHcCCC------c-cccccccCCcCEEEEEe---cCcccc-----
Confidence 4566668999999999999999999999953211 112211 1 01122344433322111 111110
Q ss_pred ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 006571 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335 (640)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~ 335 (640)
+ .....++++++| +..+.+++.+|+++|+||||+|||+.....+.
T Consensus 86 -----------------------------~-----~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 86 -----------------------------S-----DGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred -----------------------------c-----CCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 0 012346666655 77777888999999999999999999888776
Q ss_pred H-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 336 Q-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 336 ~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
. .++.+.+.+.++|++||++ ++.+.+|++..++.|++...+...++
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 5666766789999999985 46778999999999999988865443
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-16 Score=157.92 Aligned_cols=136 Identities=21% Similarity=0.244 Sum_probs=99.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEE-EEccCCCCCCCCCHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVK 247 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~ 247 (640)
++.+.+|+++++++|++++|+||||+||||++++|++... ..++| +| |..++.+++.
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------la~~G~~v---pa~~~~l~~~ 72 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------MAQIGCFV---PAEYATLPIF 72 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------HHHcCCCc---chhhcCccCh
Confidence 4579999999999999999999999999999999987321 11222 33 3344566777
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD 327 (640)
|+|... ++..+..+. ..+.+|+|++|+ ..+.+++.+|++++||||++|+|
T Consensus 73 d~I~~~------------------------~~~~d~~~~-----~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~ 122 (204)
T cd03282 73 NRLLSR------------------------LSNDDSMER-----NLSTFASEMSET-AYILDYADGDSLVLIDELGRGTS 122 (204)
T ss_pred hheeEe------------------------cCCccccch-----hhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCC
Confidence 776421 122211111 235799999975 56667889999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHCCCEEEEEeCCCC
Q 006571 328 STTALRI-VQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 328 ~~s~~~i-~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
+.....+ ...++.+.+.|.++|++||+..
T Consensus 123 ~~~~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 123 SADGFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 9776655 4567777777999999999853
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-16 Score=155.44 Aligned_cols=160 Identities=19% Similarity=0.154 Sum_probs=110.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+.+|++++.++ ++++|.||||||||||||++++.... |+ .|..+.. .+..++++.| +|+.+++.|
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l----~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~ 84 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL----AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASD 84 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH----hc---cCCeecc-ccceecceee---EeccCCchh
Confidence 34689999999988 99999999999999999999863321 11 1222221 1356777765 567777777
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP---TSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP---Tsg 325 (640)
++..+.. .+ ..|.++++-+...+.+|++++|||| |++
T Consensus 85 ~ls~g~s---------------------------------------~f-~~e~~~l~~~l~~~~~~~llllDEp~~gt~~ 124 (216)
T cd03284 85 DLAGGRS---------------------------------------TF-MVEMVETANILNNATERSLVLLDEIGRGTST 124 (216)
T ss_pred hhccCcc---------------------------------------hH-HHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence 7754310 00 1133344444444679999999999 888
Q ss_pred CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|..+. ....++.+.+. +.|+|++||+. ++.+++|++.-+++|++...+..+++.
T Consensus 125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~ 180 (216)
T cd03284 125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVV 180 (216)
T ss_pred HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEE
Confidence 998652 23344555555 88999999994 467889988888899988877766653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.5e-15 Score=154.67 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=96.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-----hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-----~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
.-++|+||||||||||+++|+|.+. +.+|+|.++|+++. .++...+++++|++ +.+.++|.||..-
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~--~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k------ 182 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS--TGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK------ 182 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC--CCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH------
Confidence 6789999999999999999998664 45899999999874 23445677888865 3344555543210
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006571 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (640)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (640)
. .|+ .......+|+++++|||++ ...+...+
T Consensus 183 ------~--------------------------------~~~-----~~~i~~~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 183 ------A--------------------------------EGM-----MMLIRSMSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------H--------------------------------HHH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHH
Confidence 0 011 2222336999999999974 23344455
Q ss_pred HHHHHCCCEEEEEeCCCCcH-H-----------HhccCEEEEEcCCeEEEecChHHH
Q 006571 339 QDIAEAGKTVVTTIHQPSSR-L-----------FHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~~~~~-i-----------~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+.+ +.|.|+|+++|++..+ + ...|||+++|++|+ ..|+++++
T Consensus 214 ~~~-~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 214 EAL-HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred HHH-hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 554 3699999999985431 2 25689999999887 66666554
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-14 Score=152.87 Aligned_cols=178 Identities=26% Similarity=0.368 Sum_probs=133.5
Q ss_pred cccceeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 006571 169 EKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~G-----e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (640)
.+.-+-+..+.|+.| |++..+|.||.|||||+++++|++. |...|+|-. -.++|=||.-.-=..
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~-pd~~~e~p~----------lnVSykpqkispK~~ 416 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK-PDEGGEIPV----------LNVSYKPQKISPKRE 416 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC-CCccCcccc----------cceeccccccCcccc
Confidence 455677888888887 5789999999999999999999765 444454421 247788886544334
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
-||++.+.--.+. .-....-+.++++-|.+++..|.. +.+|||||.|||+||..|=..+++++.|||.
T Consensus 417 ~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i~dqe-----vq~lSggelQRval~KOGGKpAdvYliDEps 484 (592)
T KOG0063|consen 417 GTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENIIDQE-----VQGLSGGELQRVALALCLGKPADVYLIDEPS 484 (592)
T ss_pred chHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHHHhHH-----hhcCCchhhHHHHHHHhcCCCCceEEecCch
Confidence 5898877532110 001123466777777777766654 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 324 SGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 324 sgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+-||++.+...-..+++.. +.++|-.++-||..-.. -++||+++.+
T Consensus 485 AylDSeQRi~AskvikRfilhakktafvVEhdfImaT-Yladrvivf~ 531 (592)
T KOG0063|consen 485 AYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMAT-YLADRVIVFE 531 (592)
T ss_pred hhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHH-hhcceeEEEe
Confidence 9999999988888888864 55889999999965432 4689987764
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.9e-13 Score=142.31 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=65.3
Q ss_pred CCcCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-
Q 006571 293 VRGVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK- 362 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~- 362 (640)
...+|+||+|++.||+.|+ .+|+|++||||+++||+..+..+++.+.++ +..+++++|++.. +...
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhh
Confidence 3569999999999999885 799999999999999999999999988754 4578999998543 3344
Q ss_pred -cCEEEEEcCCeE
Q 006571 363 -FDKLILLGKGSL 374 (640)
Q Consensus 363 -~D~i~vL~~G~i 374 (640)
.++++.+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 357999999987
|
|
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-14 Score=141.47 Aligned_cols=80 Identities=18% Similarity=0.115 Sum_probs=57.2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~-~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
..+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. ..++.+.++ +.++|++||++ ++.+.+|+.--+.+
T Consensus 60 s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~ 136 (185)
T smart00534 60 STFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRN 136 (185)
T ss_pred cHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceE
Confidence 468888776333332 23499999999999999999877764 556777764 88999999996 46777875333444
Q ss_pred CeEEE
Q 006571 372 GSLLY 376 (640)
Q Consensus 372 G~iv~ 376 (640)
++...
T Consensus 137 ~~~~~ 141 (185)
T smart00534 137 LHMSA 141 (185)
T ss_pred EEEEE
Confidence 44433
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-13 Score=123.48 Aligned_cols=73 Identities=19% Similarity=0.120 Sum_probs=61.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lT 245 (640)
+.+|+++++++++|++++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +|+ .|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~--------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI--------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IR 70 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh--------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hh
Confidence 46899999999999999999999999999999986 5889999998742 345557778777 554 49
Q ss_pred HHHHHHHH
Q 006571 246 VKETLTYA 253 (640)
Q Consensus 246 V~Enl~~~ 253 (640)
++|||.++
T Consensus 71 i~~Ni~~~ 78 (107)
T cd00820 71 LRLNIFLI 78 (107)
T ss_pred HHhhceee
Confidence 99999873
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=132.56 Aligned_cols=133 Identities=17% Similarity=0.210 Sum_probs=87.1
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCC-CCCHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP-HLTVKETL 250 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~-~lTV~Enl 250 (640)
|-+|+++.=..+.+++|.||||+|||||||.++..... ...|...... ...++|..|....+. ..++.++
T Consensus 18 vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~- 88 (213)
T cd03281 18 VPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG- 88 (213)
T ss_pred EcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc-
Confidence 44555543222389999999999999999999832111 1235433221 234777777532221 1111111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
++.. .-|-||++++++++.+|+++|||||++|+|+..
T Consensus 89 -----------------------------~S~f--------------~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~ 125 (213)
T cd03281 89 -----------------------------QSAF--------------MIDLYQVSKALRLATRRSLVLIDEFGKGTDTED 125 (213)
T ss_pred -----------------------------cchH--------------HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHH
Confidence 1100 237799999999999999999999999999976
Q ss_pred HHHH-HHHHHHHHHC---CCEEEEEeCCCC
Q 006571 331 ALRI-VQMLQDIAEA---GKTVVTTIHQPS 356 (640)
Q Consensus 331 ~~~i-~~~L~~l~~~---g~TvI~~tH~~~ 356 (640)
...+ ...++++.+. +.++|++||++.
T Consensus 126 ~~~~~~ail~~l~~~~~~~~~vli~TH~~~ 155 (213)
T cd03281 126 GAGLLIATIEHLLKRGPECPRVIVSTHFHE 155 (213)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence 5444 5688888764 248999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=130.60 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=56.8
Q ss_pred cCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 295 GVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
.||||||.+++||--|+ .+.++++||||.++||...+..+.++|+++.+ +.-+|++||++ .++..+|+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~-~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK-QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc--ccccccccccccc
Confidence 69999999999987663 47789999999999999999999999999864 46799999995 4688899887664
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-13 Score=158.65 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=91.3
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHHHHHH
Q 006571 175 GITGSVNPG-EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKETLTY 252 (640)
Q Consensus 175 ~vs~~i~~G-e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~-l~~~lTV~Enl~~ 252 (640)
.+|+.+.+| ++++|.||||+|||||||+|+|.... ...| .+||.... .+ .+.+.+..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~-aq~G-----------------~~Vpa~~~~~~---~~~d~i~~ 371 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM-FQSG-----------------IPIPANEHSEI---PYFEEIFA 371 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH-HHhC-----------------CCccCCccccc---cchhheee
Confidence 378888888 99999999999999999999985211 1122 13333321 11 11111110
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
.+... + .+. .....+|+|+++++.|++.+ .+|+++|||||++|+|+....
T Consensus 372 --------~i~~~---~---si~---------------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ 421 (771)
T TIGR01069 372 --------DIGDE---Q---SIE---------------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGS 421 (771)
T ss_pred --------ecChH---h---HHh---------------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHH
Confidence 00000 0 011 01257999999999998876 899999999999999999999
Q ss_pred HH-HHHHHHHHHCCCEEEEEeCCCC
Q 006571 333 RI-VQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 333 ~i-~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+ ...++.+.+.|.++|++||+..
T Consensus 422 ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 422 ALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred HHHHHHHHHHHhcCCEEEEECChHH
Confidence 88 5778888878999999999954
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-12 Score=134.32 Aligned_cols=174 Identities=16% Similarity=0.210 Sum_probs=105.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC--CEe-CC-hhccC---cEEEEccCCCCCCCCCHHHHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN--DHP-YS-KSLKS---KIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~--G~~-~~-~~~~~---~i~yV~Q~~~l~~~lTV~Enl 250 (640)
+.+.+||.++|+||+|+|||||++.|.+..........+++- +.+ .. .++.+ .+-++.+-+. +..+.+
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-----~~~~~~ 85 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-----PPERHV 85 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-----CHHHHH
Confidence 578899999999999999999999999755321111222221 111 11 11111 1222222221 111111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHH-----------HcCCCccccccccCccCCcCCHHH--------HHHHHHHHHHh
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVIN-----------ELGLERCQDTMIGGSFVRGVSGGE--------RKRVCIGNEII 311 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~-----------~lgL~~~~~t~vg~~~~~~LSGGq--------rqRv~IA~aL~ 311 (640)
..... ..+.++...+ ...+....++..+ .....+|||+ +||+++||++.
T Consensus 86 ~~~~~-----------~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~ 153 (249)
T cd01128 86 QVAEM-----------VLEKAKRLVEHGKDVVILLDSITRLARAYNTVVP-PSGKILSGGVDANALHKPKRFFGAARNIE 153 (249)
T ss_pred HHHHH-----------HHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCCC
Confidence 11000 0000111100 0012223344333 2335689999 99999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 312 INPSLLFLDEPTSGLDSTTALR-IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~-i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
.+++|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++.. ...+|.|.+|+.|++
T Consensus 154 ~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~paI~vl~s~sr 211 (249)
T cd01128 154 EGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIFPAIDILKSGTR 211 (249)
T ss_pred CCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCCCeEEEcCCCCc
Confidence 99999999 999999765554 54 55555457899999999875 578999999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-12 Score=131.61 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHH
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPT-----SGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPT-----sgLD~~s~~~i~~~L~~l~~ 343 (640)
|++++.||++++.+|+++++|||| +|||+.++..+.+.++++++
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999999875
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=135.03 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=113.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC---Ch---------hccCcEEEEcc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK---------SLKSKIGFVTQ 236 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~---~~---------~~~~~i~yV~Q 236 (640)
+..+++++ +.+.+|++++|+|+||+|||||+++|+|.. . +..|.|.+.|+.- .+ .+++.|.+|.+
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~-~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~ 221 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-S-ADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVAT 221 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-C-CCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEEC
Confidence 35689999 999999999999999999999999999854 3 4579999965433 21 24567889986
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH-HHHhhCCC
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-~aL~~~P~ 315 (640)
.+.-. -.+....+.+ -.+.|.+..-| .|..+- ..+++ |.+-| |++.
T Consensus 222 ~~~~~---~~r~~~~~~a--------------~~iAEyfr~~g----~~Vll~---~Dslt-----r~A~A~rEis---- 268 (438)
T PRK07721 222 SDQPA---LMRIKGAYTA--------------TAIAEYFRDQG----LNVMLM---MDSVT-----RVAMAQREIG---- 268 (438)
T ss_pred CCCCH---HHHHHHHHHH--------------HHHHHHHHHCC----CcEEEE---EeChH-----HHHHHHHHHH----
Confidence 54211 0111111111 01122222222 122211 01111 11111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 316 iLlLDEP--TsgLD~~s~~~i~~~L~~l~~--~g~-----TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
+.+.|| |+|+|+.....+.+.++++.. .|. ||++.+||.+. ..||++..+.+|+|+..++..+
T Consensus 269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123454 679999999999999999873 575 99999999874 6799999999999999998766
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=123.94 Aligned_cols=135 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+.+|+++.+++|++++|.||||+||||++++|++.... ...|...... .-.++|..|= |..+...|
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l-a~~G~~v~a~-------~~~~~~~~~i---~~~~~~~d 85 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM-AQIGSFVPAS-------SATLSIFDSV---LTRMGASD 85 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH-HhCCCEEEcC-------ceEEeccceE---EEEecCcc
Confidence 35689999999999999999999999999999999983222 3356543221 1123333331 11111111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS--GGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS--GGqrqRv~IA~aL~~~P~iLlLDEPTsgL 326 (640)
++. .++| ..|-+|++-...-+.+|+++|||||.+|.
T Consensus 86 ~~~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT 123 (222)
T cd03287 86 SIQ------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGT 123 (222)
T ss_pred ccc------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCC
Confidence 110 0111 12444444444456789999999999888
Q ss_pred CHHHHHHH-HHHHHHHHHC-CCEEEEEeCCCC
Q 006571 327 DSTTALRI-VQMLQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 327 D~~s~~~i-~~~L~~l~~~-g~TvI~~tH~~~ 356 (640)
|+.....+ ...++.+.+. +.++|++||++.
T Consensus 124 ~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 124 STHDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred ChhhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 87766664 5667777765 889999999964
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.3e-12 Score=133.48 Aligned_cols=185 Identities=26% Similarity=0.371 Sum_probs=125.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------h------------ccC--cEEEEccCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S------------LKS--KIGFVTQDD 238 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~------------~~~--~i~yV~Q~~ 238 (640)
+||++.+++|-||-||||-+++|+|++.+ +. |.- .++-+..+ + ++. +.-||.|-+
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kp-nl-g~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ip 174 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKP-NL-GRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIP 174 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCC-CC-CCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHH
Confidence 58999999999999999999999998753 22 210 01111100 0 000 001222211
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
... ..+|.++|. ....++...++++.+.|.+..+..+ ..|||||-||.+||.+-+.+.++.+
T Consensus 175 r~~-k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~-----~~lsggelqrfaia~~~vq~advyM 236 (592)
T KOG0063|consen 175 RAV-KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREV-----EQLSGGELQRFAIAMVCVQKADVYM 236 (592)
T ss_pred HHH-HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhh-----hhcccchhhhhhhhhhhhhhcceeE
Confidence 111 113333332 1222334667778888877666543 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC-----CeEEEecChHHHHHHH
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK-----GSLLYFGKASEAMAYF 387 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~-----G~iv~~G~~~~~~~~f 387 (640)
+|||.+-||...+.+--..++.+....+=||++-||++- +.-+.|-|.+|.. |-+..--+..+...-|
T Consensus 237 FDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsV-LDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF 309 (592)
T KOG0063|consen 237 FDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSV-LDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF 309 (592)
T ss_pred ecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechH-HHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence 999999999999999999999998888999999999874 4445788888864 3444333445544444
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.2e-12 Score=144.37 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.1
Q ss_pred CcCCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEIIIN----PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~----P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+||||+||++||++++.. |++|||||||+|||+.++..+.+.|+++++ ++|||++||++. +...||++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 46899999999999999985 699999999999999999999999999975 899999999975 34689999999
Q ss_pred cCCe
Q 006571 370 GKGS 373 (640)
Q Consensus 370 ~~G~ 373 (640)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 9874
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-12 Score=142.47 Aligned_cols=79 Identities=24% Similarity=0.381 Sum_probs=69.7
Q ss_pred cCCcCCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHH
Q 006571 292 FVRGVSGGERKRVCIGNEII----------INPSLLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~----------~~P~iLlLDEPT-sgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~ 360 (640)
.+..||||||||++||++|+ .+|+++|||||| ++||+.+...+.+.|+++ .|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34689999999999999987 599999999998 789999999999999998 5889999999964 45
Q ss_pred hccCEEEEEcC-CeE
Q 006571 361 HKFDKLILLGK-GSL 374 (640)
Q Consensus 361 ~~~D~i~vL~~-G~i 374 (640)
..||++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 77999999986 554
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.5e-11 Score=139.92 Aligned_cols=77 Identities=23% Similarity=0.397 Sum_probs=69.6
Q ss_pred CcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+||||+||++||++++. +|+++|+|||++|||..++..+.+.|+++++ +.+||++||+|. +...||+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 3589999999999999997 5899999999999999999999999999975 789999999975 45899999999
Q ss_pred cCCe
Q 006571 370 GKGS 373 (640)
Q Consensus 370 ~~G~ 373 (640)
.++.
T Consensus 506 ~k~~ 509 (553)
T PRK10869 506 SKET 509 (553)
T ss_pred eccc
Confidence 8753
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-12 Score=147.71 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=63.7
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
..+|+|++|++.|++++ .+|+++|||||++|+|+.....+.. ++..+.+.|.++|++||++.. ....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el-~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKEL-KALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHH-HHHHhcCCCeE-EE
Confidence 57999999999999998 8999999999999999999888854 677777778999999999542 22334544443 45
Q ss_pred eEEEe
Q 006571 373 SLLYF 377 (640)
Q Consensus 373 ~iv~~ 377 (640)
.+.+.
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55553
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=148.47 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=73.8
Q ss_pred ccCCcCCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHH
Q 006571 291 SFVRGVSGGERKRVCIGNEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLF 360 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~ 360 (640)
..++.|||||++||+||++|+. +|++|||||||+|||+.+...+++.|+++...|++|++|||++. ...
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~ 1024 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRE 1024 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHH
Confidence 4568899999999999999986 79999999999999999999999999999888999999999965 467
Q ss_pred hccCEEEEEcCC
Q 006571 361 HKFDKLILLGKG 372 (640)
Q Consensus 361 ~~~D~i~vL~~G 372 (640)
.++|+|.|++.|
T Consensus 1025 ~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1025 RIPHRILVKKTN 1036 (1042)
T ss_pred hhCCEEEEEECC
Confidence 889999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=131.31 Aligned_cols=138 Identities=23% Similarity=0.386 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHH------HHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAID------VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~------~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
+..|++.|.+.|...+.+.+. .....+..+.+ +|-.+||.-.. -++....|||||.||+-||..|=.+=
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLt----L~R~a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLT----LSRSAGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccc----ccccCCCcChhHHHHHHHHHHhcccc
Confidence 346788888888766543211 11111122222 23345664321 13345689999999999999997653
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 315 --~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
=+++||||+-||-+..-.++++.|++|.+.|-|+|++-||.. ....||+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 478999999999999999999999999999999999999954 56889999998 5689999999999985
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-10 Score=115.81 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=92.2
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 179 SVNPGEVLALMGPSGSGKTTL-LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTL-l~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
-+++|+++.|.|+|||||||| ++++.+... .| ..+.|+..+ .|..+.+.....+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~----~g--------------~~~~yi~~e------~~~~~~~~~~~~~g 75 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ----NG--------------YSVSYVSTQ------LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh----CC--------------CcEEEEeCC------CCHHHHHHHHHHhC
Confidence 489999999999999999999 688886332 12 124555532 35555555443221
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCC----CHH
Q 006571 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGL----DST 329 (640)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgL----D~~ 329 (640)
. .. ++.... +.-...+. . ..+|+++.++-.+.+.+-. +|+++++||||+++ |+.
T Consensus 76 ~--~~---------~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~ 137 (230)
T PRK08533 76 Y--DI---------NKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEV 137 (230)
T ss_pred C--ch---------HHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchH
Confidence 1 11 111110 10000010 1 2367776665555444333 69999999999999 888
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCc------HHHhccCEEEEEc
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLG 370 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~------~i~~~~D~i~vL~ 370 (640)
....+.+.++.+++.|.|+++++|.... .+..++|-|+.|+
T Consensus 138 ~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 138 AVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 8889999999998878887776664321 1233467777776
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-10 Score=109.89 Aligned_cols=78 Identities=19% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCCEEEEEeCCCCc------
Q 006571 293 VRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS------ 357 (640)
Q Consensus 293 ~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD---~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~------ 357 (640)
+..+|+|++| +.........+|+++++|||++.+| ......+.+.++.+++.|.|+|+++|....
T Consensus 69 ~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~ 148 (187)
T cd01124 69 PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFG 148 (187)
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccC
Confidence 4578999998 4555555667999999999999999 888888889999988889999999998653
Q ss_pred --HHHhccCEEEEEc
Q 006571 358 --RLFHKFDKLILLG 370 (640)
Q Consensus 358 --~i~~~~D~i~vL~ 370 (640)
.+..+||.|+.|+
T Consensus 149 ~~~~~~~aD~ii~l~ 163 (187)
T cd01124 149 GGDVEYLVDGVIRLR 163 (187)
T ss_pred cCceeEeeeEEEEEE
Confidence 2567789999887
|
A related protein is found in archaea. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.1e-11 Score=118.28 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=89.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+-+|+++.+++|++++|.||||+||||+++.+++...- ...| ..+... ...++++ +.+|..+...|
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~l-a~~G------~~vpa~-~~~i~~~---~~i~~~~~~~d 84 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIM-AQMG------MDVPAK-SMRLSLV---DRIFTRIGARD 84 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHH-HHcC------CccCcc-ccEeccc---cEEEEecCccc
Confidence 45789999999999999999999999999999999974221 0112 111111 1112222 22232322233
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
++..+ + ..+. -|-+|++-....+.+|+++|||||.+|+|+
T Consensus 85 ~~~~~--------------------------~-------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~ 124 (218)
T cd03286 85 DIMKG--------------------------E-------------STFM-VELSETANILRHATPDSLVILDELGRGTST 124 (218)
T ss_pred ccccC--------------------------c-------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence 32211 0 0011 244444444444578999999999999999
Q ss_pred HHHHHHHHH-HHHHHHC-CCEEEEEeCCCC
Q 006571 329 TTALRIVQM-LQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 329 ~s~~~i~~~-L~~l~~~-g~TvI~~tH~~~ 356 (640)
.....+... ++.+.+. +.++|++||++.
T Consensus 125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 998888887 7777765 899999999954
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-11 Score=118.45 Aligned_cols=63 Identities=22% Similarity=0.487 Sum_probs=53.6
Q ss_pred CcCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 294 RGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
..+|.|+||.+.|+..|...+ .++++|||-++|+|..+..+++.|+++.+.+.-||++||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 457999999999999988877 899999999999999999999999887765789999999863
|
|
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.9e-12 Score=122.10 Aligned_cols=144 Identities=30% Similarity=0.545 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006571 491 QQYTILFRRGIKE-HRHDYFS-WLRITQVLATAVILGLLWWQSDSKSPKGLEDQAGLLFFIAVFWSFFPIFTAIFTFPQE 568 (640)
Q Consensus 491 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~aliiG~lf~~~~~~~~~~~~~~~g~lff~~~~~~~~~~~~~i~~~~~e 568 (640)
+|++.|++|+++. +|++... +..++..++.++++|.+|.+.+ ++.+++ ++.|++++.+.+..+.........+..|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLG-NSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccc-cccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 5999999999986 6887666 7788999999999999999886 334444 7788888877766655555555778899
Q ss_pred hHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCCChHHHHHHHHHHHHHHHHHHh
Q 006571 569 RAMLSKERAADMYRLSAYFLARTTSDLPLNLVLPVLFLVIVYFMAGLRMGAGPFFLSMLTVFLSIVAAQA 638 (640)
Q Consensus 569 r~v~~rE~~~g~Y~~~ay~lA~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~F~~f~l~~~l~~~~~~~ 638 (640)
+..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.++++++++.++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 146 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSG 146 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccc
Confidence 99999999999999999999999999999999999999999999999987 566666666655555443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-11 Score=116.67 Aligned_cols=79 Identities=13% Similarity=0.190 Sum_probs=64.2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEP--TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEP--TsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
..+||+++-+..+++..+.+|+++++||| +.++| ..+.+.+.++.+.|+++|+++|+. .+...+|+|..+.+
T Consensus 77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~ 150 (174)
T PRK13695 77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPG 150 (174)
T ss_pred EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCC
Confidence 46999999999999999999999999995 44444 345666666666799999999983 34567899999999
Q ss_pred CeEEEec
Q 006571 372 GSLLYFG 378 (640)
Q Consensus 372 G~iv~~G 378 (640)
|++.+.-
T Consensus 151 ~~i~~~~ 157 (174)
T PRK13695 151 GRVYELT 157 (174)
T ss_pred cEEEEEc
Confidence 9997763
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-10 Score=138.67 Aligned_cols=78 Identities=28% Similarity=0.330 Sum_probs=68.8
Q ss_pred cCCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCE
Q 006571 292 FVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 292 ~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~ 365 (640)
.+..|||||++ |++||++++.+|+++||||||++||+..+..+.+.|..++..+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45679999999 555666788999999999999999999999999999998776789999999963 5688999
Q ss_pred EEEEcC
Q 006571 366 LILLGK 371 (640)
Q Consensus 366 i~vL~~ 371 (640)
+++|+.
T Consensus 863 ~~~l~~ 868 (880)
T PRK03918 863 VIRVSL 868 (880)
T ss_pred EEEEEe
Confidence 999984
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=126.47 Aligned_cols=78 Identities=26% Similarity=0.256 Sum_probs=64.7
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH--------HHhccCEEEEEcCCeEEEecChH
Q 006571 311 IINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 311 ~~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~--------i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
..+|.++++|||+.+| |+..+..+.+.++.+.+.|.++|++||++... +.+.||.+++|.+|++...|..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~- 728 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR- 728 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH-
Confidence 5799999999999999 79999999999999988899999999998652 1367999999999998776643
Q ss_pred HHHHHHHhcCC
Q 006571 382 EAMAYFSSIGC 392 (640)
Q Consensus 382 ~~~~~f~~~g~ 392 (640)
++++.+|+
T Consensus 729 ---~~~~~~gl 736 (818)
T PRK13830 729 ---EFYERIGF 736 (818)
T ss_pred ---HHHHHcCC
Confidence 34455554
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-10 Score=136.34 Aligned_cols=80 Identities=25% Similarity=0.220 Sum_probs=69.0
Q ss_pred ccCCcCCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc
Q 006571 291 SFVRGVSGGERKRVCIGNEIII--------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~--------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~ 362 (640)
..+..|||||+++++||++|+. +|++||+||||++||+.+...+++.|..+.+.|+||++|||... ...++
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i 1023 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERI 1023 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhc
Confidence 4568899999999999999996 89999999999999999999999999999888999999999743 23445
Q ss_pred cCEEEEEcC
Q 006571 363 FDKLILLGK 371 (640)
Q Consensus 363 ~D~i~vL~~ 371 (640)
-.+|.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 566666654
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.5e-10 Score=139.91 Aligned_cols=110 Identities=16% Similarity=0.216 Sum_probs=78.5
Q ss_pred CCCCCHHHHHHHHHhccCCCCccHH---HHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH------HHHHHHHHh
Q 006571 241 FPHLTVKETLTYAALLRLPNTLTKQ---QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK------RVCIGNEII 311 (640)
Q Consensus 241 ~~~lTV~Enl~~~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq------Rv~IA~aL~ 311 (640)
|. .|+.|||.+ . +. .+.+ .......+++.. +... |+.++. ...||||||| |++||++++
T Consensus 1154 ~~-~~~~~~i~~-~----~~-~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~--~~~lS~Gq~~~~~~~~rlala~~~~ 1221 (1311)
T TIGR00606 1154 YR-GQDIEYIEI-R----SD-ADENVSASDKRRNYNYRVV--MLKG-DTALDM--RGRCSAGQKVLASLIIRLALAETFC 1221 (1311)
T ss_pred cC-ccHHHHhhc-C----CC-CChHHHHHHHcCchHHHhc--cCCC-CeecCC--CCCCchhhhhHhhHhHHHHHHHHHh
Confidence 44 499999987 2 11 1211 111223333322 3333 565542 2479999999 999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEeCCCCcHHHhcc
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-----~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+|++|+|||||+|||+.+...+.+.|..+.. .|.|||++||++. .+..+|
T Consensus 1222 ~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~~ 1277 (1311)
T TIGR00606 1222 LNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELLG 1277 (1311)
T ss_pred cCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHHh
Confidence 99999999999999999999999999988742 3789999999965 354443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-10 Score=118.05 Aligned_cols=144 Identities=19% Similarity=0.216 Sum_probs=94.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (640)
=+++.+++|+.++|+||+|||||||+++|++.+. +..|.+.+.+.. +....+..+.++.+...
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~--~~~~iv~ied~~El~~~~~~~~~l~~~~~~-------------- 199 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP--KDERIITIEDTREIFLPHPNYVHLFYSKGG-------------- 199 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC--ccccEEEEcCccccCCCCCCEEEEEecCCC--------------
Confidence 3668899999999999999999999999998653 445666664321 00000111222211100
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 006571 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333 (640)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~ 333 (640)
+ + ...++- .-.+..+|-.+|+++++|||.+ .+
T Consensus 200 ----------------------------~------~---~~~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e 231 (308)
T TIGR02788 200 ----------------------------Q------G---LAKVTP----KDLLQSCLRMRPDRIILGELRG-------DE 231 (308)
T ss_pred ----------------------------C------C---cCccCH----HHHHHHHhcCCCCeEEEeccCC-------HH
Confidence 0 0 001111 1235556778999999999996 34
Q ss_pred HHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 334 i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+.+.++.+...+.+++.++|..+ .....||+..|..|++...|.+.+.+
T Consensus 232 ~~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 232 AFDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 56667766543346799999976 45668999999999998888887765
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=119.47 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=115.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
++-++++..+. ....+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.|.+.|+.
T Consensus 131 ~~r~~i~~~l~-------TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~--~~~gvI~~iGer------- 193 (432)
T PRK06793 131 FEREEITDVFE-------TGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK--ADINVISLVGER------- 193 (432)
T ss_pred hheechhhccC-------CCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCC--CCeEEEEeCCCC-------
Confidence 55566665441 234688885 9999999999999999999999999998542 345655554432
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
..+|.|.+..-. ..-++.+. ..+ ....+-|.|+|+|++.+.+
T Consensus 194 -------------g~ev~e~~~~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~ 235 (432)
T PRK06793 194 -------------GREVKDFIRKEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLAT 235 (432)
T ss_pred -------------cccHHHHHHHHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHH
Confidence 246776654321 11122110 111 1235789999999999988
Q ss_pred Hh-------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 310 II-------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 310 L~-------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
.+ .++-++++|+||+..|+. .+|-..+.+.-..|.+..+.+|- + ++++|.-...+|.|...++.
T Consensus 236 ~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~tv 306 (432)
T PRK06793 236 SIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYTV 306 (432)
T ss_pred HHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEEE
Confidence 88 789999999999999997 45555555554458888888883 3 34455555678988777654
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=102.55 Aligned_cols=63 Identities=21% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTS----------GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTs----------gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~ 358 (640)
.+.++.+++..+++...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45566678888999999999999999994 4555555666666555555689999999987653
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=131.34 Aligned_cols=77 Identities=23% Similarity=0.325 Sum_probs=66.6
Q ss_pred cCCcCCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HC-C-CEEEEEeCCCCcHHHhc
Q 006571 292 FVRGVSGGERKRVCI------GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA-G-KTVVTTIHQPSSRLFHK 362 (640)
Q Consensus 292 ~~~~LSGGqrqRv~I------A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~-g-~TvI~~tH~~~~~i~~~ 362 (640)
.+..||||||+|++| |++++.+|++++|||||++||+.....+.+.|+... .. | .|||++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 467899999999975 589999999999999999999999999999998654 33 3 48999999964 4578
Q ss_pred cCEEEEEc
Q 006571 363 FDKLILLG 370 (640)
Q Consensus 363 ~D~i~vL~ 370 (640)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-08 Score=98.90 Aligned_cols=82 Identities=22% Similarity=0.417 Sum_probs=61.7
Q ss_pred cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEE
Q 006571 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLI 367 (640)
Q Consensus 289 g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~ 367 (640)
|+......|-||-=---+.+. .++.-|.|||||-++|.|.-+..++..|+++++.|.-+||.||.|-- ..+ --.|+
T Consensus 123 ~~~sLh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiL--lAiP~A~I~ 199 (233)
T COG3910 123 GGRSLHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPIL--LAIPGAEIY 199 (233)
T ss_pred CCcchhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhh--eeCCCcEEE
Confidence 334445688898654444444 45678999999999999999999999999999999999999998742 222 14566
Q ss_pred EEcCCe
Q 006571 368 LLGKGS 373 (640)
Q Consensus 368 vL~~G~ 373 (640)
-++.+.
T Consensus 200 ~~~~~g 205 (233)
T COG3910 200 EISESG 205 (233)
T ss_pred EEecCC
Confidence 666554
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=104.75 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+|+++|..+|+++++|||. |.++...++ +.+..|..++.++|..+. ...+||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4788999999999999996 665533333 345579999999999763 46789987764
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-09 Score=133.81 Aligned_cols=76 Identities=18% Similarity=0.287 Sum_probs=66.9
Q ss_pred cCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 292 FVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+..||||||+|++||++++ .+|+++||||||++||+.+...+.+.|+.+++ +.++|+|||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999984 67799999999999999999999999999875 5789999999763 57799997
Q ss_pred EEc
Q 006571 368 LLG 370 (640)
Q Consensus 368 vL~ 370 (640)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=102.81 Aligned_cols=164 Identities=19% Similarity=0.193 Sum_probs=98.0
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
+-|+.+ .+=+++|.++.|.|++|+|||||...++-... . .| ..+.|+..+. +..+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~--~-~g--------------~~~~y~~~e~------~~~~~ 68 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL--K-QG--------------KKVYVITTEN------TSKSY 68 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH--h-CC--------------CEEEEEEcCC------CHHHH
Confidence 455554 56799999999999999999999998852111 1 11 2345555432 33332
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC--
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEPTSG-- 325 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEPTsg-- 325 (640)
+.-.... +... .+.+. .|.-...+.... .....+.++++.+.....++. +|+++++||||+.
T Consensus 69 ~~~~~~~--g~~~---------~~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 69 LKQMESV--KIDI---------SDFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred HHHHHHC--CCCh---------hHHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 2221111 1010 01110 011111111010 112356788999999999998 9999999999964
Q ss_pred -CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc------HHHhccCEEEEEcC
Q 006571 326 -LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS------RLFHKFDKLILLGK 371 (640)
Q Consensus 326 -LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~------~i~~~~D~i~vL~~ 371 (640)
+|......+++.++.+++.|.|+++++|+... .+..++|-++.|+.
T Consensus 135 ~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 135 YAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 45555556666677777779999999998653 13455676666653
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=113.13 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=93.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
.++++.+..+..|++++++||||+||||++..|++++. ...|. .+|++|.+|. ...++.|+|
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~--~~~G~-------------~kV~LI~~Dt---~RigA~EQL 305 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV--MRHGA-------------SKVALLTTDS---YRIGGHEQL 305 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH--HhcCC-------------CeEEEEeCCc---cchhHHHHH
Confidence 35677777888999999999999999999999998642 12231 2588999886 257899999
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK-RVCIGNEIIINP-----SLLFLDEPTS 324 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq-Rv~IA~aL~~~P-----~iLlLDEPTs 324 (640)
.+.+.... ++........+..+...+|.+....+| .+...+++. .+.-..+++.++ .+|+||.++.
T Consensus 306 r~~AeilG---Vpv~~~~~~~Dl~~aL~~L~d~d~VLI-----DTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~ 377 (484)
T PRK06995 306 RIYGKILG---VPVHAVKDAADLRLALSELRNKHIVLI-----DTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH 377 (484)
T ss_pred HHHHHHhC---CCeeccCCchhHHHHHHhccCCCeEEe-----CCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence 98766532 111111122233334456665544333 232222322 234444555554 6899999988
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Q 006571 325 GLDSTTALRIVQMLQDIAEAGKTVVTTIHQ 354 (640)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~ 354 (640)
+ ..+.+.++.....+.+-++.|+-
T Consensus 378 ~------~~l~~i~~~f~~~~~~g~IlTKl 401 (484)
T PRK06995 378 G------DTLNEVVQAYRGPGLAGCILTKL 401 (484)
T ss_pred H------HHHHHHHHHhccCCCCEEEEeCC
Confidence 7 33444555554445655555553
|
|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.7e-09 Score=123.64 Aligned_cols=78 Identities=32% Similarity=0.456 Sum_probs=67.3
Q ss_pred CCcCCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEeCCCCcHH
Q 006571 293 VRGVSGGERK------RVCIGNEIIIN-----P-SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK-TVVTTIHQPSSRL 359 (640)
Q Consensus 293 ~~~LSGGqrq------Rv~IA~aL~~~-----P-~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~-TvI~~tH~~~~~i 359 (640)
+..||||||+ |++|+++++.+ | +++||||||++||+.....+.+.|+.+...|. +||++||++. .
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~ 856 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L 856 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence 4689999999 89999998864 3 67999999999999999999999999876564 8999999975 3
Q ss_pred HhccCEEEEEcCC
Q 006571 360 FHKFDKLILLGKG 372 (640)
Q Consensus 360 ~~~~D~i~vL~~G 372 (640)
...||+++.|.+.
T Consensus 857 ~~~ad~~~~~~~~ 869 (880)
T PRK02224 857 VGAADDLVRVEKD 869 (880)
T ss_pred HHhcCeeEEeecC
Confidence 4679999999753
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.6e-09 Score=127.63 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=68.0
Q ss_pred cCCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 292 FVRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+..||||||++++||++|+. +|+++|||||+++||+.....+.+.|+++++ +..+|++||++. +...||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 7899999999999999999999999999865 578999999964 568999998
Q ss_pred EEcC
Q 006571 368 LLGK 371 (640)
Q Consensus 368 vL~~ 371 (640)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7754
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-09 Score=114.30 Aligned_cols=52 Identities=21% Similarity=0.285 Sum_probs=44.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
+.+|++||+++++||+++|+|||||||||||+ .|.. .++.+|+|.++|.++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 5544 3454558999999874
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.7e-08 Score=99.89 Aligned_cols=136 Identities=21% Similarity=0.386 Sum_probs=83.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC-EeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND-HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G-~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
|.+..|+||+|+|||||.-.++=.. ..|.=++++ ... .-..++-|+.=|+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v----a~G~~~~g~~~~~--~~~~~Vlyi~~Ed----------------------- 51 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM----ALGKNLFGGGLKV--TEPGRVVYLSAED----------------------- 51 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH----hcCccccCCcccc--CCCceEEEEECCC-----------------------
Confidence 6788999999999999998887321 123211111 110 1123344554322
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC-
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN----------------EIIINPSLLFLDEPTS- 324 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~----------------aL~~~P~iLlLDEPTs- 324 (640)
+.++..+++..+...+++.+..+... ..+|+.|++.+++ ....+|+++++| |++
T Consensus 52 -~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~ 122 (239)
T cd01125 52 -PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVS 122 (239)
T ss_pred -CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHH
Confidence 12233445555555555443322211 2245555555443 335799999999 775
Q ss_pred -----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCC
Q 006571 325 -----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 325 -----gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~ 356 (640)
.+|+.....+++.|++++++ |.|||+++|..-
T Consensus 123 ~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 123 FHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 899999999853
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.3e-07 Score=82.67 Aligned_cols=118 Identities=32% Similarity=0.414 Sum_probs=76.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
++..+.|.||+|+||||+++.|+..+.... .+-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEV-----------------LDQLL------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccC-----------------HHHHH------------
Confidence 467899999999999999999997654211 134444443221100 00000
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-----
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ----- 336 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~----- 336 (640)
.... ........+++..+..+.++--.+|+++++||+..-.+.........
T Consensus 51 -------------~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~ 106 (148)
T smart00382 51 -------------LIIV-----------GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELR 106 (148)
T ss_pred -------------hhhh-----------hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhH
Confidence 0000 00113567788888888888888899999999999999998776664
Q ss_pred -HHHHHHHCCCEEEEEeC
Q 006571 337 -MLQDIAEAGKTVVTTIH 353 (640)
Q Consensus 337 -~L~~l~~~g~TvI~~tH 353 (640)
........+..+|+++|
T Consensus 107 ~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 107 LLLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHHhcCCCEEEEEeC
Confidence 22222344778888988
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.7e-07 Score=101.09 Aligned_cols=124 Identities=24% Similarity=0.401 Sum_probs=76.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
.+++.++.|.||+||||||+++.|.+.+.. ...|.|..-+.++..........+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~-~~~~~i~tiEdp~E~~~~~~~~~i~q~e--------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINK-NAAGHIITIEDPIEYVHRNKRSLINQRE--------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCc-CCCCEEEEEcCChhhhccCccceEEccc---------------------
Confidence 467889999999999999999999975432 2245555443332110000000010000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~ 339 (640)
.|. + ..+ -.-+++++|-.+|+++++||+. |+.+....++
T Consensus 177 ------------------vg~----~---------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~--- 215 (343)
T TIGR01420 177 ------------------VGL----D---------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT--- 215 (343)
T ss_pred ------------------cCC----C---------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH---
Confidence 010 0 001 1224667888999999999997 8888765444
Q ss_pred HHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 340 DIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 340 ~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
.+..|.+|+.++|..+. ....+|++-|
T Consensus 216 -aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 -AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred -HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 34569999999999653 4566777654
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.8e-07 Score=108.30 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=54.5
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh--ccCEEEEEcCCeEE
Q 006571 306 IGNEIIINPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH--KFDKLILLGKGSLL 375 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~--~~D~i~vL~~G~iv 375 (640)
|++++..+|+++++|||+.+| |+..+..+.+.++.+.+.|.+++++||++.. +.. .++.|+-....+|.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~ 751 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF 751 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence 677888999999999999999 7999999999999998889999999999764 333 23333333444444
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.5e-07 Score=99.67 Aligned_cols=175 Identities=19% Similarity=0.248 Sum_probs=106.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh------------hccCcEEEEcc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------------SLKSKIGFVTQ 236 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~------------~~~~~i~yV~Q 236 (640)
...+++++ +.+.+|+.++|+|+||+|||||+++|+|... +..|.+...|..-++ .+++.+.++.+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~--~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~ 226 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE--ADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVAT 226 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEEC
Confidence 35799999 9999999999999999999999999998543 345666665543221 01122223222
Q ss_pred CCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH-HHHhhCCC
Q 006571 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPS 315 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-~aL~~~P~ 315 (640)
-+. ++.+-. ......-.+.+.+...| .|..+- ..+|+- .+=| |++.
T Consensus 227 ~d~-----~p~~r~------------~~~~~a~t~AE~frd~G----~~Vll~---~DslTr-----~A~A~REis---- 273 (440)
T TIGR01026 227 SDQ-----SPLLRL------------KGAYVATAIAEYFRDQG----KDVLLL---MDSVTR-----FAMAQREIG---- 273 (440)
T ss_pred CCC-----CHHHHH------------HHHHHHHHHHHHHHHCC----CCEEEE---EeChHH-----HHHHHHHHH----
Confidence 211 110000 00111112223333222 232221 112221 1111 1111
Q ss_pred EEEEeCC--CCCCCHHHHHHHHHHHHHHHHCCC-------EEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 316 LLFLDEP--TSGLDSTTALRIVQMLQDIAEAGK-------TVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 316 iLlLDEP--TsgLD~~s~~~i~~~L~~l~~~g~-------TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
+.+.|| +.|+|+.....+-+++.+....+. ||++.+||..+ ..+|++..+.+|+|+..+...+.
T Consensus 274 -l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 274 -LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred -HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 335675 459999999999999998876667 88889999754 56899999999999999987664
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-08 Score=100.60 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=34.1
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~ 221 (640)
+-|+.+ .+-+++|++++|.||+|+|||||...++...... ..+.+++...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~e 57 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTTE 57 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEcc
Confidence 345663 5679999999999999999999988665211111 1344566553
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=102.76 Aligned_cols=60 Identities=22% Similarity=0.296 Sum_probs=55.0
Q ss_pred CcCCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 294 RGVSGGERKRVCIGNEIII---------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~---------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
..+|.||+|++.||..|+. +|+|||||||+++||+..+..+++.|.+. |.+|++++|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3599999999999999999 99999999999999999999999999753 679999999864
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.8e-08 Score=104.95 Aligned_cols=86 Identities=22% Similarity=0.286 Sum_probs=67.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc--ccEEEECCEeCCh----------hccCcEEEEcc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV--GGSITYNDHPYSK----------SLKSKIGFVTQ 236 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~--~G~I~~~G~~~~~----------~~~~~i~yV~Q 236 (640)
...+|+++ +.+.+|++++|+|+||+|||||+++|+|.. .+.. -|.|-.+|.++.+ ..|..+++++|
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~-~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~ 219 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYT-QADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPA 219 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhccc-CCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecC
Confidence 35799999 999999999999999999999999999854 3321 2445555554431 12456899999
Q ss_pred CCCCCCCCCHHHHHHHHHhc
Q 006571 237 DDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 237 ~~~l~~~lTV~Enl~~~~~~ 256 (640)
+...+..+++.+++.+.+..
T Consensus 220 d~s~~~rl~a~e~a~~iAEy 239 (434)
T PRK07196 220 DESPLMRIKATELCHAIATY 239 (434)
T ss_pred CCChhhhHHHHHHHHHHHHH
Confidence 99999999999999876654
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.3e-09 Score=117.05 Aligned_cols=167 Identities=18% Similarity=0.198 Sum_probs=99.4
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH--cCCCCCCcccEEEECCEeCChhcc---CcEEEEccCCCCCCCC
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS--GRLMEPTVGGSITYNDHPYSKSLK---SKIGFVTQDDVLFPHL 244 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~--G~~~~~~~~G~I~~~G~~~~~~~~---~~i~yV~Q~~~l~~~l 244 (640)
+-||.+ .+=+.+|..+.|.||+|||||||..-++ |... .. ..-+++......++++ +.+|+-.++..--.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~g-e~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-- 83 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FD-EPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-- 83 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CC-CCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC--
Confidence 456665 5689999999999999999999988763 3211 11 2335555443322221 23444443211000
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH--HHHhhCCCEEEEeCC
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEP 322 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEP 322 (640)
++.+ ... .+. .....+++.+++.+..+.. ...+|+|++|||.|+ .+|..+|+..
T Consensus 84 ----~l~~---~~~---~~~----~~~~~~~~~~~l~~~l~~i-----~~~ls~g~~qRVvIDSl~aL~~~~~~~----- 139 (484)
T TIGR02655 84 ----KLFI---LDA---SPD----PEGQDVVGGFDLSALIERI-----NYAIRKYKAKRVSIDSVTAVFQQYDAV----- 139 (484)
T ss_pred ----ceEE---Eec---Cch----hccccccccCCHHHHHHHH-----HHHHHHhCCcEEEEeehhHhhhhcCch-----
Confidence 0000 000 000 0011122334444333332 357999999999999 6666665543
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH-------H-HhccCEEEEEc
Q 006571 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR-------L-FHKFDKLILLG 370 (640)
Q Consensus 323 TsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~-------i-~~~~D~i~vL~ 370 (640)
...+..+.++++.+++.|.|+|+++|+.... + ..+||.|+.|+
T Consensus 140 -----~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 -----SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred -----HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999888899999999986420 1 45789999987
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=2e-07 Score=100.75 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=63.0
Q ss_pred cCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCE
Q 006571 295 GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~ 365 (640)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|... ..++|.+++.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 48999999999999998 899999999999999999999999888643 23555555432 56999
Q ss_pred EEEEcCCeEEEec
Q 006571 366 LILLGKGSLLYFG 378 (640)
Q Consensus 366 i~vL~~G~iv~~G 378 (640)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875433
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.3e-07 Score=90.08 Aligned_cols=84 Identities=25% Similarity=0.176 Sum_probs=62.3
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhccCcEEEEccCC--CCCCCCCHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDD--VLFPHLTVKE 248 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~--~l~~~lTV~E 248 (640)
..+=+.+.+++|+.++|+||||||||||+++|+|.+. +..|.|.+.+..-. ...+..++++.|.+ ...+..|+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~--~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP--PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMAD 91 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHH
Confidence 4555667799999999999999999999999998653 45799999775321 12234567766554 3466789999
Q ss_pred HHHHHHhcc
Q 006571 249 TLTYAALLR 257 (640)
Q Consensus 249 nl~~~~~~~ 257 (640)
.+....+.+
T Consensus 92 ~l~~~lR~~ 100 (186)
T cd01130 92 LLRSALRMR 100 (186)
T ss_pred HHHHHhccC
Confidence 998876543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.1e-07 Score=108.49 Aligned_cols=78 Identities=27% Similarity=0.423 Sum_probs=69.0
Q ss_pred cCCcCCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 292 FVRGVSGGERKRVCIGNEII------IN--PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~------~~--P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+..|||||+=.++||.+|+ .+ =++|||||||..||+.+...+++.|.++...+++|++|||+. ++.+.+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56789999999988877764 35 599999999999999999999999999998899999999994 467889
Q ss_pred CEEEEEcC
Q 006571 364 DKLILLGK 371 (640)
Q Consensus 364 D~i~vL~~ 371 (640)
|.++.+..
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998875
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-07 Score=97.94 Aligned_cols=83 Identities=20% Similarity=0.254 Sum_probs=64.4
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC---EeC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPY 223 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G---~~~ 223 (640)
+..++.++++..|. ....+++.++ .|.+||.++|+||||||||||+++|++.. . +..|.|.+.| +++
T Consensus 137 p~~~~r~~v~~~l~-------TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~-pd~gvv~liGergrev 206 (450)
T PRK06002 137 PPAMTRARVETGLR-------TGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-A-FDTVVIALVGERGREV 206 (450)
T ss_pred CCCeEeecceEEcC-------CCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-C-CCeeeeeecccCCccH
Confidence 44689999998873 2357899996 99999999999999999999999999743 3 4578888864 544
Q ss_pred Ch--------hccCcEEEEccCCC
Q 006571 224 SK--------SLKSKIGFVTQDDV 239 (640)
Q Consensus 224 ~~--------~~~~~i~yV~Q~~~ 239 (640)
.. ..++.|++|+|.+.
T Consensus 207 ~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 207 REFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhHHHHHHhhCCeEEEEEcCCC
Confidence 21 12467999999764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.1e-07 Score=90.91 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=65.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhc-cCCCCcc
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPNTLT 263 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~~~~~~ 263 (640)
+++|.||||||||||.+.|++.+. +|. +.++++|+.+. .++..+........ ..|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~----~~~---------------~~v~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG----NPK---------------VVIISQDSYYK-DLSHEELEERKNNNYDHPDAF- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC----CCC---------------eEEEEeccccc-ccccccHHHhccCCCCCCCcc-
Confidence 589999999999999999998541 222 34444444332 22333332221110 111111
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
..+...+.+..+...+..+. +....|.|++++..+ .+.+|+++|+|+|..+.++
T Consensus 60 ---~~~~~~~~l~~l~~~~~~~~-----p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 ---DFDLLISHLQDLKNGKSVEI-----PVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred ---cHHHHHHHHHHHHCCCCEec-----cccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 12233455555544332222 234678888776555 5788999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-06 Score=105.38 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=86.1
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
..|-+|+++. ..+.++.|.|||++||||+||.++-...- ..-| .|||-+..- +++.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~il-Aq~G-----------------~~VPa~~a~---i~~~d~ 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLL-AQIG-----------------SFVPAESAR---IGIVDR 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHH-HhcC-----------------CceeccceE---ecccCe
Confidence 4577788887 67789999999999999999998732110 0112 233322211 111111
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh--CCCEEEEeCC---CC
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII--NPSLLFLDEP---TS 324 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~--~P~iLlLDEP---Ts 324 (640)
| ...+|-. |. ...++|-=+.....++..|-. +++++|+||| |+
T Consensus 653 I------------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs 700 (854)
T PRK05399 653 I------------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTS 700 (854)
T ss_pred e------------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCC
Confidence 1 1111211 11 124566666666666666654 8999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCE
Q 006571 325 GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 325 gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~ 365 (640)
.+|..+ .....++.+.+. +.++|++||.. ++.+++++
T Consensus 701 ~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 701 TYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred cchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 999554 455566666665 58999999993 46677765
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.7e-07 Score=110.27 Aligned_cols=60 Identities=25% Similarity=0.388 Sum_probs=53.2
Q ss_pred CCcCCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 293 VRGVSGGERKRVC----IGNE--------IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 293 ~~~LSGGqrqRv~----IA~a--------L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...+++++.++ |.++|+++|.+
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4789999999996 5655 55899999999999999999999999999887 78999999874
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-05 Score=93.28 Aligned_cols=49 Identities=20% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 309 EIIINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD-~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
.+..+|.++++|||...|| +..+..+.+.++.+.+.|..++++||.+..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 3456899999999999999 889999999999998889999999999754
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-06 Score=105.74 Aligned_cols=166 Identities=16% Similarity=0.246 Sum_probs=91.1
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
+..=+++..+++++++|+|++|+|||||++.+.+++.. ...|.+++++..+.... . .+-.++...+ +..
T Consensus 196 l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~-~--~~~~~~~~~~-------~~~ 264 (1153)
T PLN03210 196 MSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSM-E--IYSSANPDDY-------NMK 264 (1153)
T ss_pred HHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccch-h--hccccccccc-------chh
Confidence 33445677889999999999999999999999876643 34788988763221100 0 0000100000 000
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
. ...++.+.++++..++. +..+ ++.|+| |..++-+|+||+- |..
T Consensus 265 ~------------~l~~~~l~~il~~~~~~-----------~~~~-~~~~~~------L~~krvLLVLDdv----~~~-- 308 (1153)
T PLN03210 265 L------------HLQRAFLSEILDKKDIK-----------IYHL-GAMEER------LKHRKVLIFIDDL----DDQ-- 308 (1153)
T ss_pred H------------HHHHHHHHHHhCCCCcc-----------cCCH-HHHHHH------HhCCeEEEEEeCC----CCH--
Confidence 0 01122233333333321 1122 566666 3355667888984 433
Q ss_pred HHHHHHHHHHH---HCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEecChHHHHHHHHhcCC
Q 006571 332 LRIVQMLQDIA---EAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKASEAMAYFSSIGC 392 (640)
Q Consensus 332 ~~i~~~L~~l~---~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~G~~~~~~~~f~~~g~ 392 (640)
..++.|+... ..|.+||+|||+... +... +|+++-+.. =+.+++.+.|....+
T Consensus 309 -~~l~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~------l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 309 -DVLDALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVCL------PSNELALEMFCRSAF 365 (1153)
T ss_pred -HHHHHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence 3344444432 348899999999542 2222 576655531 145677887876544
|
syringae 6; Provisional |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-07 Score=87.37 Aligned_cols=66 Identities=23% Similarity=0.339 Sum_probs=47.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh--cc-CcEEEEccCCCCCCCCCHHHHHHHH
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LK-SKIGFVTQDDVLFPHLTVKETLTYA 253 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~--~~-~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (640)
+|++++|+|+||||||||+++|+|.+. -+.++|.++... .+ ...++.+|+...++..++.+++.+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~------~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS------AKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC------CEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 699999999999999999999998653 157888876421 22 2356777765555555666666553
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.3e-05 Score=79.23 Aligned_cols=36 Identities=33% Similarity=0.467 Sum_probs=32.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-+.|+++.+-+.+|+++.|.|++|+|||||+..++.
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~ 52 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYAL 52 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899889999999999999999999999998874
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13873 conjugal transfer ATPase TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=6e-05 Score=90.24 Aligned_cols=46 Identities=24% Similarity=0.264 Sum_probs=42.0
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 311 IINPSLLFLDEPTSGLD-STTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 311 ~~~P~iLlLDEPTsgLD-~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
-.+|+++++|||+.+|| +..+..+.+.++.+.+.|.+++++||++.
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~ 679 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA 679 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 45899999999999999 78899999999999888999999999975
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.4e-06 Score=89.99 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=46.3
Q ss_pred eeEEEEeEEEEEeecccccccccccee-----------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILN-----------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+.|+||++.|+ .++.+|+ |+++.|.+|+.++|+||+|+|||||++.|+..+
T Consensus 129 ~ri~Fe~LTf~YP-------~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 129 NRVLFENLTPLYP-------NERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCeEEEEeeecCC-------CccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 3699999999984 2346886 999999999999999999999999999999643
|
Members of this family differ in the specificity of RNA binding. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.6e-06 Score=90.42 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=69.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC---EeCCh----hcc---CcEEEE-----
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND---HPYSK----SLK---SKIGFV----- 234 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G---~~~~~----~~~---~~i~yV----- 234 (640)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|.... ...|.|.+.| +++.+ .++ .+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEE-ADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhccccc-CCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCC
Confidence 4689998 99999999999999999999999999985532 3346777755 44421 121 235555
Q ss_pred ccCCC--CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC
Q 006571 235 TQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE 281 (640)
Q Consensus 235 ~Q~~~--l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~ 281 (640)
+|++. +.+.+ +...+.-..+.+....+...+...++.+++++++|.
T Consensus 230 ~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 230 DQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 88763 23322 333333222222111123445667788888888884
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.5e-05 Score=70.19 Aligned_cols=55 Identities=18% Similarity=0.288 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-----CCCEEEEEeCCCC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-----AGKTVVTTIHQPS 356 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-----~g~TvI~~tH~~~ 356 (640)
++..........++.++++||.-.. ++.....+.+.+..... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4445555666778999999998765 56666778888877643 4678888888643
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=6.1e-06 Score=66.41 Aligned_cols=36 Identities=42% Similarity=0.734 Sum_probs=29.3
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 173 LNGITGSVNP-GEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 173 L~~vs~~i~~-Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.++.++++.+ |+++.|.||||||||||+++|.=.++
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence 4456777876 56999999999999999999985444
|
|
| >PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.7e-06 Score=84.06 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=48.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccE----EEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGS----ITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~----I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
.+..+++|.||||||||||.+.|++.+. +.+|. |.+|+.......+...+++++.+. .+.+++.+.+.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~--~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~-~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ--QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGA-PETFDVAGLAALLRR 106 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh--hccCCceEEEecccccCCHHHHHhcccccccCC-CCCCCHHHHHHHHHH
Confidence 4568999999999999999999998764 34676 555654444333445677766433 345566666655433
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=87.46 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=59.7
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC-hhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
-++.+.-.+++|++++|+|+||+|||||+|.|+|... +..|+|.+++.... ...++++.+++|+..++++ ....++
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~--~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV--QKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc--cceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhh
Confidence 3555666678999999999999999999999998654 45899999875432 2235679999999888864 566665
Q ss_pred HH
Q 006571 251 TY 252 (640)
Q Consensus 251 ~~ 252 (640)
.+
T Consensus 261 ~l 262 (356)
T PRK01889 261 QL 262 (356)
T ss_pred cc
Confidence 54
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=6.4e-05 Score=73.47 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=44.5
Q ss_pred HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 006571 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC--IGNEIII-NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (640)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~--IA~aL~~-~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~ 344 (640)
.+.+.++..+++- -.+++ ....+++||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.+.
T Consensus 126 ~i~~~l~~~~~~~---iiv~n-K~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPV---LIVLT-KADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcE---EEEEE-CcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 3445555555431 12222 34568999999987 5555543 34443 99999999999999999987654
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00018 Score=78.55 Aligned_cols=159 Identities=19% Similarity=0.280 Sum_probs=101.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC--ChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY--SKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~--~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
+-|++| ++.|+|.+=-||||||++|.--.++. .-| ||++. +. .....+--+|-- .
T Consensus 240 MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnH-ipG----DGRE~VVT~---~~avkirAEDGR----~---------- 296 (448)
T PF09818_consen 240 MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNH-IPG----DGREFVVTD---PDAVKIRAEDGR----S---------- 296 (448)
T ss_pred EeeCCc-EEEEECCCCccHHHHHHHHHhcccCC-CCC----CCceEEEEC---CCceEEEecCCc----e----------
Confidence 457888 99999999999999999998544431 112 33321 00 000011111100 0
Q ss_pred ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC-----CHHH
Q 006571 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL-----DSTT 330 (640)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL-----D~~s 330 (640)
+. ...+.-++. +|+...||.- -.-.+=||-.-|=..|..||=...++||+||=||+- |...
T Consensus 297 ------V~----~vDISpFI~--~LP~g~dT~~--FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rM 362 (448)
T PF09818_consen 297 ------VE----GVDISPFIN--NLPGGKDTTC--FSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERM 362 (448)
T ss_pred ------Ee----CccchHHHh--hCCCCCCCCc--ccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHH
Confidence 00 000112233 3455555531 112458999999999999999999999999999975 5555
Q ss_pred HHHH----------HHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 331 ALRI----------VQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 331 ~~~i----------~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
+..+ ++.++.+. +.|.+.|+++-- +.+.+..+|+|++|++=+.
T Consensus 363 q~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 363 QALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred HHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhhHhhCCEEEEecCccc
Confidence 5554 56677774 458877777755 5568899999999998664
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.8e-06 Score=76.32 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=41.1
Q ss_pred HHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 006571 270 RAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI-----IINPSLLFLDEPTSGLDSTTALRIVQMLQDI 341 (640)
Q Consensus 270 ~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL-----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l 341 (640)
.+.+.+...+.+- ..+.+ +...++++++++....... ...|+++ |+|++|.....++++.|.++
T Consensus 101 ~~~~~l~~~~~~v---i~v~n-K~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPF---LVVLT-KADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCE---EEEEE-chhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3445565554321 12222 2345789988887666553 2345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.4e-05 Score=87.36 Aligned_cols=62 Identities=16% Similarity=0.181 Sum_probs=42.8
Q ss_pred hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHH-CCCEEEEEeCCCCc-------HHHhccCEEEEEcCCe
Q 006571 312 INPSLLFLDEPTSGL----D-----STTALRIVQMLQDIAE-AGKTVVTTIHQPSS-------RLFHKFDKLILLGKGS 373 (640)
Q Consensus 312 ~~P~iLlLDEPTsgL----D-----~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~-------~i~~~~D~i~vL~~G~ 373 (640)
.+|+++++|.-++=. + .....+++..|.++++ .|.|++++.|...+ .+..++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 479999999876521 1 2234556666777754 59999999997432 1456789999998654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.1e-06 Score=82.46 Aligned_cols=56 Identities=32% Similarity=0.393 Sum_probs=42.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD 237 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~ 237 (640)
++|.+++|+|+||||||||.+.|++.+.. ...|.+.++|.++...+...++|.+|+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~~~~~~~~~~~~~~ 77 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVRHGLCSDLGFSDAD 77 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence 67899999999999999999999986642 235789999988754444445555554
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=68.53 Aligned_cols=48 Identities=33% Similarity=0.538 Sum_probs=36.8
Q ss_pred CCcCCHHHHH-HHHHHHHH------hh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006571 293 VRGVSGGERK-RVCIGNEI------II------NPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (640)
Q Consensus 293 ~~~LSGGqrq-Rv~IA~aL------~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (640)
..++|||||| .+.++.++ -. .|.+++||||+++||+.....+++.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4689999994 44444333 22 3799999999999999999999999874
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.9e-06 Score=83.87 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=25.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|++++|+||||||||||++.|++.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999999854
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR00554 panK_bact pantothenate kinase, bacterial type | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.7e-06 Score=85.95 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=48.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe---CChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~---~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
.++||.||||||||||+++|.+.+...+.+|.|.+-+.| .....++..++. |+..+.+.+++.+.+.+-..++
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 699999999999999999999866432346776664433 333333445544 5555666777777777655443
|
Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.1e-05 Score=79.34 Aligned_cols=37 Identities=38% Similarity=0.556 Sum_probs=30.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
|++++|+||||||||||+++|++... ..+.+++..+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~-----~~~~~~~~~~~ 38 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ-----TQLLVAHRYIT 38 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC-----CeEEEcCEECC
Confidence 78999999999999999999998542 25777776654
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.3e-05 Score=78.91 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc-HHHhccCEEEEEcCC
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKG 372 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~-~i~~~~D~i~vL~~G 372 (640)
|+-+|..||..+..+|+.+..+| +.+||....++.+.+++..+.|.+||+.+|.+.. .+...||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988877 7899999999999998876557899999998732 355789999887654
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=9e-06 Score=86.73 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=53.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----------hccCcEEEEccCCCCCCCCCHHHHH
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----------SLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----------~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
++|++++++||||+||||++..|++.+. ..+|+|.+.+.|..+ ..+..+.+++|.....|..++.+++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~--~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l 189 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYK--AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAI 189 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999999998764 346899988877521 1245688998876555555666666
Q ss_pred HHH
Q 006571 251 TYA 253 (640)
Q Consensus 251 ~~~ 253 (640)
...
T Consensus 190 ~~~ 192 (318)
T PRK10416 190 QAA 192 (318)
T ss_pred HHH
Confidence 543
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.6e-05 Score=80.92 Aligned_cols=123 Identities=24% Similarity=0.396 Sum_probs=71.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCEeCCh---hccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
++|.+++|.||+||||||+|++|++.+.. ++..+.|.....|+.- ..+...+.|.|... +.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v--~~------------- 196 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEI--PR------------- 196 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeec--cc-------------
Confidence 58999999999999999999999985532 2223355544444321 11222344444321 00
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
+ ..++..+ |-.+|=.+|+++++.|-- |.++....++
T Consensus 197 ----------------------------~-------~~~~~~~------l~~aLR~~Pd~i~vGEiR---d~et~~~al~ 232 (358)
T TIGR02524 197 ----------------------------H-------LNNFAAG------VRNALRRKPHAILVGEAR---DAETISAALE 232 (358)
T ss_pred ----------------------------c-------ccCHHHH------HHHHhccCCCEEeeeeeC---CHHHHHHHHH
Confidence 0 0001111 112556789999999943 6665544433
Q ss_pred HHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 337 ~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
.+..|..|+.|.|-.+ +....+|++-
T Consensus 233 ----aa~tGh~v~tTlHa~~--~~~~i~Rl~~ 258 (358)
T TIGR02524 233 ----AALTGHPVYTTLHSSG--VAETIRRLVG 258 (358)
T ss_pred ----HHHcCCcEEEeeccCC--HHHHHHHHHH
Confidence 2446889999999754 3455555544
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=86.80 Aligned_cols=68 Identities=22% Similarity=0.330 Sum_probs=53.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCCh----h----ccCcEEEEccCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYSK----S----LKSKIGFVTQDD 238 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~~----~----~~~~i~yV~Q~~ 238 (640)
...+++++ +.+.+||.++|+|+||+|||||+++|++.. .+. .-|.|-.+|+++.. . ..+++++|+...
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~-~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~s 215 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHS-EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATS 215 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCC-CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECC
Confidence 35799999 999999999999999999999999999743 332 12888889988642 1 235688887654
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.4e-05 Score=87.41 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=48.6
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------------CCCcHHHhccCEEEEEcCCeE
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------------QPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------------~~~~~i~~~~D~i~vL~~G~i 374 (640)
|..+|+++++||.-. .++ ++.+..++..|..++.+.| ++. .+...+|+|+.+++|++
T Consensus 321 LR~rPD~IivGEiRd---~Et----~~~~~~l~~ag~GvigTlHA~sa~~Ai~Rl~~~v~lg-~i~~iID~IV~I~~G~I 392 (602)
T PRK13764 321 LLVRPDYTIYDEMRK---TED----FKIFADMRLAGVGMVGVVHATRPIDAIQRFIGRVELG-MIPQIVDTVIFIEDGEV 392 (602)
T ss_pred HhhCCCEEEECCCCC---HHH----HHHHHHHHHcCCeEEEEECCCCHHHHHHHHHhhhhhc-hHHHhhcEEEEEeCCEE
Confidence 678999999999984 333 4444445555888999999 644 46678999999999999
Q ss_pred --EEecChH
Q 006571 375 --LYFGKAS 381 (640)
Q Consensus 375 --v~~G~~~ 381 (640)
+|.++..
T Consensus 393 ~~v~~~~~~ 401 (602)
T PRK13764 393 SKVYDLEFT 401 (602)
T ss_pred EEEEeeeeE
Confidence 7877643
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.7e-05 Score=89.02 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=68.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCC------CcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEP------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~------~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
.+.++|+||||+|||||.++|.+..... ...+-|.+||..+....+ ...+-.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~-----------------~i~~~llg~-- 235 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR-----------------EVTNPLLGS-- 235 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH-----------------HHhHHhcCC--
Confidence 4569999999999999999998743210 112345565543310000 001111110
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
.. +.....+.+.++..|+.+..+.. +..+||| +||||| +..||+..+..+.+
T Consensus 236 -----~~-~~~~~~a~~~l~~~gl~~~~~g~-----v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 236 -----VH-DPIYQGARRDLAETGVPEPKTGL-----VTDAHGG----------------VLFIDE-IGELDPLLQNKLLK 287 (615)
T ss_pred -----cc-HHHHHHHHHHHHHcCCCchhcCc-----hhhcCCC----------------eEEEec-cccCCHHHHHHHHH
Confidence 11 11122344557777886655433 4578888 999999 79999999999999
Q ss_pred HHHH
Q 006571 337 MLQD 340 (640)
Q Consensus 337 ~L~~ 340 (640)
.|++
T Consensus 288 ~Le~ 291 (615)
T TIGR02903 288 VLED 291 (615)
T ss_pred HHhh
Confidence 8875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.3e-05 Score=81.42 Aligned_cols=35 Identities=40% Similarity=0.694 Sum_probs=29.0
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 173 LNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 173 L~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|+.+ .+=+.+|+++.|.|++|+|||||+..++...
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~ 106 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARL 106 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4443 3468999999999999999999999998644
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.5e-05 Score=77.94 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=30.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..|.++++ +++|+.+.|+||+|+|||+|..+|+.
T Consensus 91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 45778888 99999999999999999999999975
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 640 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 9e-21 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-20 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-19 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-19 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-19 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 1e-18 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-18 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-18 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-18 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-18 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-18 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-18 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-17 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-17 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-17 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-17 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-17 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-17 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-17 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-17 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 4e-17 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 4e-17 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-17 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-17 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 7e-17 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-17 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-17 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 9e-17 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-16 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-16 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-16 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 4e-16 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-16 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-16 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 7e-16 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-15 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-15 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-15 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-15 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 8e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-15 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 9e-15 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-13 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 5e-13 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-13 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-12 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-12 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 8e-12 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 2e-11 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-11 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-11 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-11 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-11 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 5e-11 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 5e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 6e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-10 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-10 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-09 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-09 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-09 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-09 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-09 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-09 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-09 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 6e-09 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 9e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-08 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-08 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-08 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-08 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-08 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 6e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 8e-08 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 2e-07 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 5e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 2e-06 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-06 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 5e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-05 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 7e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 640 | |||
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-38 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 5e-38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-35 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-31 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-31 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 4e-31 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 5e-31 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-31 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-27 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-30 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 8e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-24 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-29 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-29 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 4e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-26 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-28 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 2e-27 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-27 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 6e-26 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-24 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-25 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-25 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-25 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-24 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-24 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-23 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-23 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-23 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 8e-23 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-23 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-21 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-20 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 5e-20 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-20 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 7e-20 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-19 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-18 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-17 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-16 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-15 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 6e-14 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-13 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-12 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-12 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 1e-09 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-08 |
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 4e-38
Identities = 44/185 (23%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN P +K +K
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNGVPITK-VKG 78
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
KI F+ ++ ++ ++V++ L A L + + +D + + + +
Sbjct: 79 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 130
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTV 348
+ +S G +RV + + +++N + LD+P +D + ++++ + +I E G +
Sbjct: 131 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 187
Query: 349 VTTIH 353
+++
Sbjct: 188 ISSRE 192
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 5e-38
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 15/185 (8%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---SLKS 229
L GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T + ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPHEVRK 88
Query: 230 KIGFVTQDDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI 288
I ++ ++ + ++ E L + A + E+ GL
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASS----SSEIEEMVERATEIAGLGEKIK--- 141
Query: 289 GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G T+
Sbjct: 142 --DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 349 VTTIH 353
+ + H
Sbjct: 200 LVSSH 204
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 3e-35
Identities = 53/231 (22%), Positives = 99/231 (42%), Gaps = 23/231 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS- 226
+ K IL I+ + G+ L G +G+GKTTLLN+L+ P G++ K
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE--PATSGTVNLFGKMPGKVG 89
Query: 227 -----LKSKIGFVTQD--DVLFPHLTVKETLTYAAL--LRLPNTLTKQQKEKRAIDVINE 277
++ IGFV+ + V + + A + + + + + A ++
Sbjct: 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN-EAHQLLKL 148
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+G+ I +S GE++RV I ++ P +L LDEP +GLD ++ +
Sbjct: 149 VGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSI 203
Query: 338 LQDIAEAGKT---VVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L ++++ T + T H + F K++LL G + G + +
Sbjct: 204 LDSLSDSYPTLAMIYVT-HFIEE-ITANFSKILLLKDGQSIQQGAVEDILT 252
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 1e-31
Identities = 66/216 (30%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS- 229
+IL GI+ SV GE ++++G SGSGK+TLL +L G L PT G +
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT-EGKVFLEGKEVDY-TNEK 74
Query: 230 --------KIGFVTQDDVLFPHLTVKET----LTYAALLRLPNTLTKQQKEKRAIDVINE 277
K+GFV Q L P LT E + K++ ++R +++E
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGK-------PKKEAKERGEYLLSE 127
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
LGL D + +SGGE++RV I + P LLF DEPT LDS R++ +
Sbjct: 128 LGLG---DKL--SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 338 LQDIAEAGKTVVTTIHQP-----SSRLFHKFDKLIL 368
I E G ++V H+ + R D ++
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-31
Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 34/233 (14%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ + IL I+ P ++A GPSG GK+T+ +LL R +PT G IT + P
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLE-RFYQPT-AGEITIDGQPIDNIS 70
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL 278
++ +S+IGFV+QD + T++E LTY L T + A + +
Sbjct: 71 LENWRSQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 279 --GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
L +T +G RGV SGG+R+R+ I + NP +L LDE T+ LDS + +
Sbjct: 126 PDQL----NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE-SM 177
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
VQ D G+T + H RL DK+ + KG + GK +E +A
Sbjct: 178 VQKALDSLMKGRTTLVIAH----RLSTIVDADKIYFIEKGQITGSGKHNELVA 226
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-31
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 24/220 (10%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E + + +N G++LA++G +G GK+TLL+LL G + P G I +
Sbjct: 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLG-IHRPI-QGKIE---------VY 65
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTY--AALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
IGFV Q F +V + + + + + A+ ++ L L
Sbjct: 66 QSIGFVPQFFSSPFA-YSVLDIVLMGRSTHINTFAKPKSHDYQV-AMQALDYLNLTHLAK 123
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EA 344
+SGG+R+ + I I L+ LDEPTS LD ++ +L D+A
Sbjct: 124 REFT-----SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ 178
Query: 345 GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
TVV T HQP+ + +K +LL K FG+ +
Sbjct: 179 NMTVVFTTHQPNQ-VVAIANKTLLLNKQ-NFKFGETRNIL 216
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 5e-31
Identities = 66/227 (29%), Positives = 111/227 (48%), Gaps = 44/227 (19%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSVNP 182
D ++ + G R + + L+F +VT Y E L I +
Sbjct: 323 DSEQEKDEGKRVIDRATGD------LEFRNVTFTYP--------GREVPALRNINLKIPA 368
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDD 238
G+ +AL+G SGSGK+T+ +L++ R + G I + H Y+ SL++++ V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIASLIT-RFYDID-EGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGS 291
LF + TV + YA +++Q + A+D IN++ GL DT+IG
Sbjct: 427 HLF-NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGL----DTIIGE- 476
Query: 292 FVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
GV SGG+R+R+ I ++ + +L LDE TS LD+ + R +Q
Sbjct: 477 --NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE-RAIQ 520
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 8e-31
Identities = 57/246 (23%), Positives = 96/246 (39%), Gaps = 31/246 (12%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
T+P F D IP + E +F+ L+ + + +
Sbjct: 304 VTLPASVREGINIFLDGHIPAENLRFRTEALQFRIADATED-LQNDSASRAFSYPSLKKT 362
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+ +LN G + E+L +MG +G+GKTTL+ LL+G ++P G + S+
Sbjct: 363 QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAG-ALKPD-EGQDIPK---LNVSM 417
Query: 228 KS-KIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K KI V LF + L + DV+ L ++
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIRGQFLN----------------PQFQTDVVKPLRIDDII 461
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD-IAE 343
D V+ +SGGE +RV I + I + +DEP++ LDS + ++++ I
Sbjct: 462 D-----QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILH 516
Query: 344 AGKTVV 349
KT
Sbjct: 517 NKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 2e-27
Identities = 50/218 (22%), Positives = 83/218 (38%), Gaps = 31/218 (14%)
Query: 146 LPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205
LP L+ VT++ +S + L + PG+VL L+G +G GK+T L +L+G
Sbjct: 75 LPTNLE-AHVTHRY----SANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAG 125
Query: 206 RL--------MEPTVGGSITYND----HPYSKSLKSK-IGFVTQDD-VLFPHLTVKETLT 251
+ P I Y Y + I + + V +K +
Sbjct: 126 KQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQ 185
Query: 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311
L L ++ + I L LE + + +SGGE +R IG +
Sbjct: 186 KVGELL---KLRMEKSPEDVKRYIKILQLEN-----VLKRDIEKLSGGELQRFAIGMSCV 237
Query: 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+ DEP+S LD L Q+++ + K V+
Sbjct: 238 QEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVI 275
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 1e-30
Identities = 67/227 (29%), Positives = 110/227 (48%), Gaps = 44/227 (19%)
Query: 125 DIPEDIEAGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSVNP 182
D+ + + G E + E + DVT Y+ +EK L+ ++ S+
Sbjct: 323 DLETERDNGKYEAERVNGE------VDVKDVTFTYQ--------GKEKPALSHVSFSIPQ 368
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDD 238
G+ +AL+G SGSGK+T+ NL + R + GSI + H Y +L+ V+Q+
Sbjct: 369 GKTVALVGRSGSGKSTIANLFT-RFYDVD-SGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GLERCQDTMIGGS 291
LF + T+ + YAA T++Q ++ A++ I + GL DT+IG
Sbjct: 427 HLF-NDTIANNIAYAAEG----EYTREQIEQAARQAHAMEFIENMPQGL----DTVIGE- 476
Query: 292 FVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
G SGG+R+RV I ++ + +L LDE TS LD+ + R +Q
Sbjct: 477 --NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESE-RAIQ 520
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-30
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 35/234 (14%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-- 224
+ IL+ I S+ GEV+ ++G SGSGK+TL L+ R P G + + H +
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIPE-NGQVLIDGHDLALA 76
Query: 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 277
L+ ++G V QD+VL + ++ + ++ A P ++ ++ K A D I+E
Sbjct: 77 DPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN----PG-MSVEKVIYAAKLAGAHDFISE 130
Query: 278 L--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
L G +T++G +G SGG+R+R+ I ++ NP +L DE TS LD +
Sbjct: 131 LREGY----NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE-H 182
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
++ G+TV+ H RL D++I++ KG ++ GK E ++
Sbjct: 183 VIMRNMHKICKGRTVIIIAH----RLSTVKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 8e-30
Identities = 55/243 (22%), Positives = 94/243 (38%), Gaps = 28/243 (11%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
F+ P F + ++ KF + T VTY +
Sbjct: 241 FSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYP----RLVKD 296
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
L G + GEV+ ++GP+G GKTT + +L+G + EPT G I ++
Sbjct: 297 YGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKIEWD-------- 346
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + Q TV E L+ +K +++ LG+ D
Sbjct: 347 -LTVAYKPQYIKADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYD-- 396
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGK 346
V +SGGE +RV I ++ + + LDEP++ LD L + + ++ + E K
Sbjct: 397 ---REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453
Query: 347 TVV 349
T +
Sbjct: 454 TAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 27/184 (14%)
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM------EPTVGGSITYND----HPYSKSLK 228
V G V+ ++GP+G+GK+T + +L+G+L+ + G I Y + LK
Sbjct: 43 VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLK 102
Query: 229 -SKIGFVTQDDV--LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+I V + L P + + L K + + +V+ L LE +
Sbjct: 103 NGEIRPVVKPQYVDLIPKAVKGKVIE---------LLKKADETGKLEEVVKALELENVLE 153
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
++ +SGGE +RV I ++ N + F DEP+S LD L + ++ ++E G
Sbjct: 154 -----REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEG 208
Query: 346 KTVV 349
K+V+
Sbjct: 209 KSVL 212
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 63/200 (31%), Positives = 103/200 (51%), Gaps = 19/200 (9%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS 226
E L + ++ GE +++MGPSGSGK+T+LN++ G L +PT G + ++ +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPT-EGEVYIDNIKTND- 71
Query: 227 LKS---------KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
L KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 278 LGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L ER + +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 132 AELEERFANHKPN-----QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQ 186
Query: 337 MLQDI-AEAGKTVVTTIHQP 355
+L+ + E GKTVV H
Sbjct: 187 LLKKLNEEDGKTVVVVTHDI 206
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 52/243 (21%), Positives = 93/243 (38%), Gaps = 28/243 (11%)
Query: 108 FTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSS 167
F+ P F + ++ R RP L + V +
Sbjct: 311 FSKPKGTRNGINEFLQGYLKDE---NVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKD 366
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
L G + GEV+ ++GP+G GKTT + +L+G + EPT G + ++
Sbjct: 367 YGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAG-VEEPT-EGKVEWDL------- 417
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ + Q TV E L+ +L + +++ LG+ D
Sbjct: 418 --TVAYKPQYIKAEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRN 468
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGK 346
+ SGGE +RV I ++ + + LDEP++ LD L + + ++ + E K
Sbjct: 469 VE-DL----SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 523
Query: 347 TVV 349
T +
Sbjct: 524 TAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 5e-27
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM----EPTVGGSITYNDHPYS 224
+ V G V+ ++GP+G+GKTT + +L+G+L+ E +
Sbjct: 103 VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGN 162
Query: 225 -------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +I V + ++ + + L L K + + +V+ E
Sbjct: 163 ELQNYFERLKNGEIRPVVKP----QYVDLLPKAVKGKVREL---LKKVDEVGKFEEVVKE 215
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
L LE + + +SGGE +RV I ++ F DEP+S LD L++ ++
Sbjct: 216 LELEN-----VLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARV 270
Query: 338 LQDIAEAGKTVV 349
++ +A GK V+
Sbjct: 271 IRRLANEGKAVL 282
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 56/227 (24%), Positives = 93/227 (40%), Gaps = 28/227 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 68
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L +++Q V Y L + K +++N++
Sbjct: 69 TKLALHRAYLSQQQTPPFATPVWH---YLTLHQHD---------KTRTELLNDV-AGALA 115
Query: 285 DTMIGGSFVRGVSGGERKRVCI-------GNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
G +SGGE +RV + + LL LDEP + LD + ++
Sbjct: 116 LDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 175
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384
L +++ G +V + H + L H + LL G +L G+ E +
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVL 221
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 68/246 (27%), Positives = 112/246 (45%), Gaps = 31/246 (12%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F+DV + L I + G AL+G +GSGK+T+ LL R +
Sbjct: 18 IEFSDVNF-----SYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYD 71
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + S++S IG V QD +LF + T+K + Y L + K
Sbjct: 72 AE--GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILF-NETIKYNILYGKLDATDEEVIKA 128
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDE 321
K + D I L DT++G +G+ SGGER+R+ I ++ +P ++ DE
Sbjct: 129 TKSAQLYDFIEALPKKW----DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDE 181
Query: 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGK 379
TS LDS T + ++D+ + +T++ H RL + +ILL KG ++ G
Sbjct: 182 ATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAH----RLSTISSAESIILLNKGKIVEKGT 236
Query: 380 ASEAMA 385
+ +
Sbjct: 237 HKDLLK 242
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-29
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 19/194 (9%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--- 224
+ ++ L ++ +V PG+ LAL+GPSG+GK+T+L LL R + + G I + S
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF-RFYDIS-SGCIRIDGQDISQVT 122
Query: 225 -KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL--GLE 281
SL+S IG V QD VLF + T+ + + Y + + + + D I G
Sbjct: 123 QASLRSHIGVVPQDTVLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGY- 180
Query: 282 RCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339
T +G RG+ SGGE++RV I I+ P ++ LDE TS LD++ I L
Sbjct: 181 ---RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLA 234
Query: 340 DIAEAGKTVVTTIH 353
+ +T + H
Sbjct: 235 KVCA-NRTTIVVAH 247
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-28
Identities = 49/236 (20%), Positives = 81/236 (34%), Gaps = 23/236 (9%)
Query: 119 KPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITG 178
F +P + + KF + + L D+ K+ + L G
Sbjct: 231 NNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSK-DLKTKMKWTKIIKKLGDFQLVVDNG 289
Query: 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238
GE++ ++GP+G GKTT +L G + GS+T S K + F D
Sbjct: 290 EAKEGEIIGILGPNGIGKTTFARILVG-EITAD-EGSVTPEKQILSY--KPQRIFPNYDG 345
Query: 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298
T L + +V L L R + S V +SG
Sbjct: 346 ------------TVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----SNVNDLSG 388
Query: 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIH 353
GE +++ I + L LD+P+S LD + + ++ + E H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-26
Identities = 30/176 (17%), Positives = 72/176 (40%), Gaps = 12/176 (6%)
Query: 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQD- 237
+L ++G +G GKTT+L +L+G ++ + K + +I ++
Sbjct: 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81
Query: 238 --DVLFPHLTVKETLTYAALLRLP--NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293
+ L ++ + L+ LTK + + +V L + +
Sbjct: 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTN-----LWNKDA 136
Query: 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
+SGG +R+ + ++ + D+P+S LD + + + ++++ + K V+
Sbjct: 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 3e-28
Identities = 74/247 (29%), Positives = 105/247 (42%), Gaps = 61/247 (24%)
Query: 125 DIPEDIE--AGTRERPKFQTEPTLPIYLKFTDVT--YKVILKGMTSSEEKDILNGITGSV 180
D DI+ G + Q + V+ Y E IL I S+
Sbjct: 319 DEDYDIKNGVGAQPIEIKQGR------IDIDHVSFQYN--------DNEAPILKDINLSI 364
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQ 236
GE +A +G SG GK+TL+NL+ R + T G I + H SL+++IG V Q
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLIP-RFYDVT-SGQILIDGHNIKDFLTGSLRNQIGLVQQ 422
Query: 237 DDVLFPHLTVKETLTY------------AALLRLPNTLTKQQKEKRAIDVINEL--GLER 282
D++LF TVKE + AA K A D I L G
Sbjct: 423 DNILF-SDTVKENILLGRPTATDEEVVEAA------------KMANAHDFIMNLPQGY-- 467
Query: 283 CQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
DT +G RGV SGG+++R+ I + NP +L LDE TS LD + I + L
Sbjct: 468 --DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV 522
Query: 341 IAEAGKT 347
+++ +T
Sbjct: 523 LSK-DRT 528
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 69/231 (29%), Positives = 107/231 (46%), Gaps = 36/231 (15%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G+T ++ PG+V AL+GP+GSGK+T+ LL L +PT GG + + P L
Sbjct: 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ-NLYQPT-GGKVLLDGEPLVQYDHHYL 91
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 280
+++ V Q+ +LF + +E + Y L T T ++ E A D I+ G
Sbjct: 92 HTQVAAVGQEPLLF-GRSFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQGY 146
Query: 281 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
DT +G G SGG+R+ V + +I P LL LD TS LD VQ L
Sbjct: 147 ----DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD-AGNQLRVQRL 198
Query: 339 QDIA--EAGKTVVTTIHQPSSRL--FHKFDKLILLGKGSLLYFGKASEAMA 385
+ A +TV+ +L + ++ L +GS+ G + M
Sbjct: 199 LYESPEWASRTVLLITQ----QLSLAERAHHILFLKEGSVCEQGTHLQLME 245
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++ +V++ + EK L ++ +N GE L + G +GSGK+TLL +++G L+E
Sbjct: 3 IEVVNVSHIF---HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-LIE 58
Query: 210 PTVGGSITYNDHPYS-KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
PT G + Y+ ++ IG Q +D F V + + +A + N +
Sbjct: 59 PT-SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFF-AERVFDEVAFA----VKNFYPDRD 112
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVR----GVSGGERKRVCIGNEIIINPSLLFLDEP 322
+ +GL+ SF +SGGE++RV I + I+ P +L LDEP
Sbjct: 113 PVPLVKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165
Query: 323 TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
GLD ++++++ GKTV+ H + + H D++++L KG ++ G E
Sbjct: 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRME 224
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 6e-26
Identities = 71/231 (30%), Positives = 111/231 (48%), Gaps = 33/231 (14%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E IL G+ V G+ +AL+G SG GK+T + L+ RL +P G ++ +
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ-RLYDPL-DGMVSIDGQDIRTINV 459
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL- 278
+ L+ IG V+Q+ VLF T+ E + Y + +T + KE A D I +L
Sbjct: 460 RYLREIIGVVSQEPVLF-ATTIAENIRYG----RED-VTMDEIEKAVKEANAYDFIMKLP 513
Query: 279 -GLERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV 335
DT++G RG SGG+++R+ I ++ NP +L LDE TS LD+ + +V
Sbjct: 514 HQF----DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE-AVV 565
Query: 336 QMLQDIAEAGKTVVTTIHQPSS-RLFHKFDKLILLGKGSLLYFGKASEAMA 385
Q D A G+T + H+ S+ R D + G ++ G E M
Sbjct: 566 QAALDKAREGRTTIVIAHRLSTVR---NADVIAGFDGGVIVEQGNHDELMR 613
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 1e-24
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 27/195 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSL 227
+L G++ V G+ LAL+G SG GK+T++ LL R +P GS+ + + L
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE-RFYDPM-AGSVFLDGKEIKQLNVQWL 1105
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINEL--GL 280
++++G V+Q+ +LF ++ E + Y ++ ++ KE I+ L
Sbjct: 1106 RAQLGIVSQEPILFD-CSIAENIAYG---DNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 281 ERCQDTMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+T +G +G SGG+++R+ I ++ P +L LDE TS LD+ + ++VQ
Sbjct: 1162 ----NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESE-KVVQEA 1213
Query: 339 QDIAEAGKTVVTTIH 353
D A G+T + H
Sbjct: 1214 LDKAREGRTCIVIAH 1228
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 38/247 (15%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
LK ++ Y S+ L GI ++ GEV A++G +G GK+TL +G +++
Sbjct: 8 LKVEELNY-------NYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG-ILK 59
Query: 210 PTVGGSITYNDHPYS------KSLKSKIGFVTQ--DDVLFPHLTVKETLTYAALLRLPNT 261
P+ G I +++ P L+ IG V Q D+ LF +V + +++ N
Sbjct: 60 PS-SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA-SVYQDVSFG----AVNM 113
Query: 262 -LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV---SGGERKRVCIGNEIIINPSLL 317
L + + KR + + G+E +D + S G++KRV I +++ P +L
Sbjct: 114 KLPEDEIRKRVDNALKRTGIEHLKD--------KPTHCLSFGQKKRVAIAGVLVMEPKVL 165
Query: 318 FLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLL 375
LDEPT+GLD I+++L ++ E G T++ H + + D + ++ +G ++
Sbjct: 166 ILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVI 223
Query: 376 YFGKASE 382
G E
Sbjct: 224 LQGNPKE 230
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 20/189 (10%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
E+ L I VN GE + ++GP+GSGKTTLL +SG + P G+I N K
Sbjct: 14 KGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG--LLPY-SGNIFINGMEVRK 69
Query: 226 SLKSKIGFVTQDDVLFP-HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
+++ I + T + +TV + + L K ++++ L L
Sbjct: 70 -IRNYIRYSTNLPEAYEIGVTVNDIVYLY--EEL-----KGLDRDLFLEMLKALKL---- 117
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
I + +S G+ V + P ++ LDEP +D+ I + +++
Sbjct: 118 GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--- 174
Query: 345 GKTVVTTIH 353
GK + H
Sbjct: 175 GKEGILVTH 183
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 5e-25
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLLSGRLMEPTVGGSITYNDHPYSKSLK 228
+L GI + GEV+ ++GPSGSGK+T L NLL E G I +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----EDFDEGEIIIDGINLKAKDT 93
Query: 229 ------SKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDVINELGL 280
++G V Q LFPH+TV +T A + + P +++ E +A+++++++GL
Sbjct: 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWP----REKAEAKAMELLDKVGL 149
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ ++ +SGG+ +RV I + + P ++ DEPTS LD ++ +++
Sbjct: 150 KDKAH-----AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204
Query: 341 IAEAGKT--VVT 350
+A G T VVT
Sbjct: 205 LANEGMTMVVVT 216
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 59/199 (29%), Positives = 100/199 (50%), Gaps = 29/199 (14%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLL---NLL----SGRL--------MEPTVGGSI 216
+L G++ G+V++++G SGSGK+T L N L G + + G +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 217 TYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA--ALLRLPNTLTKQQKEKRAIDV 274
D + L++++ V Q L+ H+TV E + A +L L K +RA+
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLS----KHDARERALKY 136
Query: 275 INELGL-ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
+ ++G+ ER Q + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 137 LAKVGIDERAQG-----KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGE 191
Query: 334 IVQMLQDIAEAGKT--VVT 350
+++++Q +AE GKT VVT
Sbjct: 192 VLRIMQQLAEEGKTMVVVT 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 20/187 (10%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS--- 229
LN I+ S++PGE+L ++G SG GKTTLL L+G +P G I+ + +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-FEQPD-SGEISLSGKTIFSKNTNLPV 77
Query: 230 ---KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
++G++ Q+ VLFPHLTV + Y L Q+ +R ++ G+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGK-GRTAQERQRIEAMLELTGISE---- 130
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+ G + +SGG+++R + + +P L+ LDEP S LD LR Q+ +D+ A +
Sbjct: 131 -LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD--EQLR-RQIREDMIAALR 186
Query: 347 TV-VTTI 352
+ +
Sbjct: 187 ANGKSAV 193
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 3e-23
Identities = 50/178 (28%), Positives = 88/178 (49%), Gaps = 26/178 (14%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKSLKSKIGFVTQ 236
+ L+GP+G+GK+ L L++G +++P G + N P + IGFV Q
Sbjct: 24 RDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPE----RRGIGFVPQ 77
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV 296
D LFPHL+V + Y L + + ++++R ++ +LG+ D +
Sbjct: 78 DYALFPHLSVYRNIAY-GLRNVE----RVERDRRVREMAEKLGIAHLLDRKP-----ARL 127
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV-VTTIH 353
SGGER+RV + ++I P LL LDEP S +D + +++++ + V +H
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDL--KTK-GVLMEELRFVQREFDVPILH 182
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 5e-23
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 28/195 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKI- 231
L+G++ SVN G+V ++GP+GSGK+TL+N+++G L + G + + + + +++
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KAD-EGRVYFENKDITNKEPAELY 80
Query: 232 --GFV-T-QDDVLFPHLTVKE-----------TLTYAALLRLPNTLTKQQKE--KRAIDV 274
G V T Q +TV E + + + +++E ++A +
Sbjct: 81 HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYK---KWIPKEEEMVEKAFKI 137
Query: 275 INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
+ L L D +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 138 LEFLKLSHLYDRK-----AGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI 192
Query: 335 VQMLQDIAEAGKTVV 349
+ ++ G T +
Sbjct: 193 FNHVLELKAKGITFL 207
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 8e-23
Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH------PYSKS 226
L+ ++ V GE ++GP+G+GKT L L++G P G I + P
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPD-SGRILLDGKDVTDLSPE--- 70
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
K I FV Q+ LFPH+ VK+ L + +R+ K + KR +D +L +E D
Sbjct: 71 -KHDIAFVYQNYSLFPHMNVKKNLEFG--MRMK----KIKDPKRVLDTARDLKIEHLLDR 123
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGK 346
+SGGE++RV + ++ NP +L LDEP S LD + + ++ K
Sbjct: 124 NP-----LTLSGGEQQRVALARALVTNPKILLLDEPLSALDP--RTQ-ENAREMLSVLHK 175
Query: 347 TV-VTTIH 353
+T +H
Sbjct: 176 KNKLTVLH 183
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 8e-23
Identities = 48/162 (29%), Positives = 82/162 (50%), Gaps = 20/162 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND------HPYSK 225
+ G++ + GE++ L+GPSGSGKTT+L L++G L PT G + P
Sbjct: 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-LERPT-KGDVWIGGKRVTDLPPQ-- 85
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
K +G V Q+ LF H+TV + +++ LR + K + + R +++ + LE
Sbjct: 86 --KRNVGLVFQNYALFQHMTVYDNVSFG--LREKR-VPKDEMDARVRELLRFMRLES--- 137
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLD 327
F +SGG+++RV + + P +L DEP + +D
Sbjct: 138 --YANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 21/188 (11%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND----HPYSKSLK 228
L+ + ++ GE ++GPSG+GKTT + +++G L P+ G + ++D +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPS-TGELYFDDRLVASNGKLIVP 78
Query: 229 SK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ IG V Q L+P+LT E + + L ++K++ KR +V L + +
Sbjct: 79 PEDRKIGMVFQTWALYPNLTAFENIAFP--LTNMK-MSKEEIRKRVEEVAKILDIHHVLN 135
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
R +SG +++RV + ++ +PSLL LDEP S LD+ +R + E
Sbjct: 136 HFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA--RMR-DSARALVKEVQ 187
Query: 346 KTV-VTTI 352
+ VT +
Sbjct: 188 SRLGVTLL 195
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 1e-20
Identities = 70/269 (26%), Positives = 117/269 (43%), Gaps = 35/269 (13%)
Query: 129 DIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLAL 188
+ + E P + + F +V ++ +L+G+ SV PG ++A+
Sbjct: 321 NEKPAIEEADNALALPNVEGSVSFENVEFRY------FENTDPVLSGVNFSVKPGSLVAV 374
Query: 189 MGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP---YS-KSLKSKIGFVTQDDVLFPHL 244
+G +GSGK+TL+NL+ RL++P G + ++ K L+ I V Q+ VLF
Sbjct: 375 LGETGSGKSTLMNLIP-RLIDPE-RGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SG 431
Query: 245 TVKETLTY----AALLRLPNTLTKQQKEKRAIDVINEL--GLERCQDTMI--GGSFVRGV 296
T+KE L + A + Q D I L G D+ + GG
Sbjct: 432 TIKENLKWGREDATDDEIVEAAKIAQ----IHDFIISLPEGY----DSRVERGGR---NF 480
Query: 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356
SGG+++R+ I ++ P +L LD+ TS +D T RI+ L+ I Q
Sbjct: 481 SGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR--YTKGCTTFIITQKI 538
Query: 357 SRLFHKFDKLILLGKGSLLYFGKASEAMA 385
DK+++L +G + FG E +
Sbjct: 539 PTALLA-DKILVLHEGKVAGFGTHKELLE 566
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 5e-20
Identities = 60/179 (33%), Positives = 89/179 (49%), Gaps = 24/179 (13%)
Query: 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225
++K +L IT + PG+ +AL+GP+GSGKTT++NLL R + G I + K
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-RFYDVD-RGQILVDGIDIRKI 422
Query: 226 ---SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ-----KEKRAIDVINE 277
SL+S IG V QD +LF TVKE L Y T ++ K + I
Sbjct: 423 KRSSLRSSIGIVLQDTILF-STTVKENLKYGNP-----GATDEEIKEAAKLTHSDHFIKH 476
Query: 278 L--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRI 334
L G +T++ + +S G+R+ + I + NP +L LDE TS +D+ T I
Sbjct: 477 LPEGY----ETVLTDNGE-DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 88.7 bits (221), Expect = 6e-20
Identities = 53/186 (28%), Positives = 89/186 (47%), Gaps = 23/186 (12%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----- 226
+ GI V G+++ L+G +G+GKTT L+ ++G L+ G I +N +
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG-LVRAQ-KGKIIFNGQDITNKPAHVI 78
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE----LGLER 282
+ I V + +FP LTV E L A R ++ KR ++ I L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNR-----KDKEGIKRDLEWIFSLFPRLKERL 133
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
Q +GG+ +SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 134 KQ---LGGT----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 343 EAGKTV 348
+ G T+
Sbjct: 187 QEGTTI 192
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-20
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 35/188 (18%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
E+K IL G++ V+PGEV A+MGP+GSGK+TL L+GR GG++ + K L
Sbjct: 31 EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG----KDL 86
Query: 228 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQ--QKEKRAIDVIN 276
++ G F+ Q V P ++ + L A N + Q+ D +
Sbjct: 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL-----NAVRSYRGQETLDRFDFQD 141
Query: 277 ELGLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLD 327
+ E+ + + G SGGE+KR N+I ++ P L LDE SGLD
Sbjct: 142 LME-EKIALLKMPEDLLTRSVNVGFSGGEKKR----NDILQMAVLEPELCILDESDSGLD 196
Query: 328 STTALRIV 335
AL++V
Sbjct: 197 -IDALKVV 203
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227
+ + IL G+ V GEV ALMGP+G+GK+TL +L+G G I + +++
Sbjct: 14 DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDG----ENI 69
Query: 228 -------KSKIG-FVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+++ G F+ Q V P +T+ L A K +E + ++
Sbjct: 70 LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLAL-----Q--AKLGREVGVAEFWTKV 122
Query: 279 GLERCQDTMIGGSFVR-----GVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDST 329
+ + S++ G SGGE+KR NEI ++ P+ LDE SGLD
Sbjct: 123 K-KALELLDWDESYLSRYLNEGFSGGEKKR----NEILQLLVLEPTYAVLDETDSGLD-I 176
Query: 330 TALRIV 335
AL++V
Sbjct: 177 DALKVV 182
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-18
Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 18/190 (9%)
Query: 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK------- 225
LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELTTLSESELT 101
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +IG + Q L TV + L L N K + ++R ++++ +GL D
Sbjct: 102 KARRQIGMIFQHFNLLSSRTVFGNVALP--LELDN-TPKDEVKRRVTELLSLVGLGDKHD 158
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDI-AEA 344
S+ +SGG+++RV I + NP +L D+ TS LD T I+++L+DI
Sbjct: 159 -----SYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL 213
Query: 345 GKTVVTTIHQ 354
G T++ H+
Sbjct: 214 GLTILLITHE 223
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 58/189 (30%), Positives = 94/189 (49%), Gaps = 21/189 (11%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSKS 226
+ ++ V GE + L+GPSG GKTT L +++G L EP+ G I D
Sbjct: 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEKGIF 75
Query: 227 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
+ K I V Q L+PH+TV + + + L+L +Q+ ++R +V LGL
Sbjct: 76 VPPKDRDIAMVFQSYALYPHMTVYDNIAFP--LKLRKV-PRQEIDQRVREVAELLGLTEL 132
Query: 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343
+ R +SGG+R+RV +G I+ P + +DEP S LD+ LR V+M ++ +
Sbjct: 133 LNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDA--KLR-VRMRAELKK 184
Query: 344 AGKTVVTTI 352
+ + T
Sbjct: 185 LQRQLGVTT 193
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 25/188 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 227
LN I + GE +AL+GPSGSGK+TLL ++G + +PT G + L
Sbjct: 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTE------L 70
Query: 228 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K +G V Q+ L+PH+TV + + + LR +++ +K+ +V L +++
Sbjct: 71 PPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLL 127
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ + +SGG+++RV I ++ P +L LDEP S LD+ LR +++ ++
Sbjct: 128 N-----RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA--LLR-LEVRAELKRL 179
Query: 345 GKTVVTTI 352
K + T
Sbjct: 180 QKELGITT 187
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 4e-16
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 27/173 (15%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
K +LN + + GP+G GK+TL+ ++ ++ +
Sbjct: 447 AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-----GFPTQEE------- 494
Query: 229 SKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTM 287
+ +V D D +V + + + + ++ D + E G D M
Sbjct: 495 CRTVYVEHDIDGTHSDTSVLDFVFESGV----------GTKEAIKDKLIEFGFT---DEM 541
Query: 288 IGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
I + +SGG + ++ + ++ N +L LDEPT+ LD+ +V L
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT 593
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-06
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 9/116 (7%)
Query: 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ K + + LGL+ ++ S +RG+SGG++ ++ + P L+ LDEPT
Sbjct: 873 RPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF-DKLILLGKGSLLYFG 378
+ LD + + + L++ V+ H S+ +++ + G + G
Sbjct: 930 NYLDRDSLGALSKALKEF---EGGVIIITH--SAEFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
K + I + +A++GP+G+GK+TL+N+L+G L PT G H
Sbjct: 682 PGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSG---EVYTHE--- 734
Query: 226 SLKSKIGFVTQDDVLFPHLTVKET 249
+I ++ Q + +T
Sbjct: 735 --NCRIAYIKQHAFAHIESHLDKT 756
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 5e-16
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 33/192 (17%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY-----NDHPYSKS 226
++G++ V GE +AL+GPSG GKTT L +L+G + +PT G I + ND P
Sbjct: 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPT-SGEIYFDDVLVNDIP---- 71
Query: 227 LKSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC 283
K +G V Q+ L+PH+TV E + + LR +K + EKR +++ +L ++
Sbjct: 72 --PKYREVGMVFQNYALYPHMTVFENIAFP--LRARRI-SKDEVEKRVVEIARKLLIDNL 126
Query: 284 QDTMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
D R +SGG+++RV + ++ P +L DEP S LD+ LR + M +
Sbjct: 127 LD--------RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA--NLR-MIMRAE 175
Query: 341 IAEAGKTVVTTI 352
I + + T
Sbjct: 176 IKHLQQELGITS 187
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-15
Identities = 61/310 (19%), Positives = 122/310 (39%), Gaps = 51/310 (16%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227
IL I+ S++PG+ + L+G +GSGK+TLL+ RL+ G I + +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLLNTE--GEIQIDGVSWDSITLEQW 92
Query: 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ--- 284
+ G + Q +F T ++ L PN + I + +
Sbjct: 93 RKAFGVIPQKVFIFSG-TFRKNLD-------PN-------AAHSDQEIWK-VADEVGLRS 136
Query: 285 ---------DTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D ++ GG +S G ++ +C+ ++ +L LDEP++ LD T +
Sbjct: 137 VIEQFPGKLDFVLVDGGC---VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY-Q 192
Query: 334 IVQMLQDIAE--AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG 391
I++ + + + A TV+ + + L + D+ +++ + + + E Y +
Sbjct: 193 IIR--RTLKQAFADCTVILCEARIEAML--ECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 392 CSPQIAMNPAEFL-LDLANGNLHDVSVPSELQDRVQTE---NSENDTANGKPTPAIVHEY 447
+ I FL + + + V V + +R Q S + + I E+
Sbjct: 249 VAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEH 308
Query: 448 LVEAYETRVA 457
L+ + V
Sbjct: 309 LLPSDIADVI 318
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 58/188 (30%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYNDHPYSKSL 227
+N + ++ GE L L+GPSG GKTT L +++G L EPT G G L
Sbjct: 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTY------L 78
Query: 228 KSK---IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
K I V Q ++PH+TV E + + L++ K + +KR L +E
Sbjct: 79 PPKDRNISMVFQSYAVWPHMTVYENIAFP--LKIKKF-PKDEIDKRVRWAAELLQIEELL 135
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344
+ +SGG+R+RV + I++ P +L +DEP S LD+ LR V M +I +
Sbjct: 136 NRY-----PAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA--KLR-VAMRAEIKKL 187
Query: 345 GKTVVTTI 352
+ + T
Sbjct: 188 QQKLKVTT 195
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 6e-14
Identities = 60/181 (33%), Positives = 91/181 (50%), Gaps = 27/181 (14%)
Query: 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT-----YNDHPYSK 225
+ I ++ GE + +GPSG GK+TLL +++G +E G + ND P +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPPA- 73
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+ +G V Q L+PHL+V E +++ L+L K+ +R V L L D
Sbjct: 74 --ERGVGMVFQSYALYPHLSVAENMSFG--LKL-AGAKKEVINQRVNQVAEVLQLAHLLD 128
Query: 286 TMIGGSFVR---GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
R +SGG+R+RV IG ++ PS+ LDEP S LD+ ALR VQM +I+
Sbjct: 129 --------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALR-VQMRIEIS 177
Query: 343 E 343
Sbjct: 178 R 178
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 51/236 (21%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
S +L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 47 SLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 95
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
+I F +Q+ + P T+KE N + E R VI LE D
Sbjct: 96 KHSGRISFCSQNSWIMP-GTIKE-----------NIIGVSYDEYRYRSVIKACQLEE--D 141
Query: 286 ---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR- 333
++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 142 ISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 334 ----IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ +++ A KT + + K DK+++L +GS ++G SE
Sbjct: 199 FESCVCKLM-----ANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 247
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 58/232 (25%), Positives = 90/232 (38%), Gaps = 42/232 (18%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+L I + G++LA+ G +G+GKT+LL ++ G L G I
Sbjct: 17 EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL--EPSEGKI--------- 65
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 284
+I F +Q + P T+KE N + E R VI LE
Sbjct: 66 KHSGRISFCSQFSWIMP-GTIKE-----------NIIFGVSYDEYRYRSVIKACQLEE-- 111
Query: 285 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D ++G G+ SGG+R R+ + + + L LD P LD T
Sbjct: 112 DISKFAEKDNIVLGE---GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 334 IVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I + A KT + + K DK+++L +GS ++G SE
Sbjct: 169 IFESCVCKLMANKTRILVTSKME--HLKKADKILILHEGSSYFYGTFSELQN 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 3e-12
Identities = 77/538 (14%), Positives = 165/538 (30%), Gaps = 142/538 (26%)
Query: 74 RSAQLKLELDE-VSSGAALSRASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPED--- 129
+S K E+D + S A+S F +E+ + F ++ + +
Sbjct: 43 KSILSKEEIDHIIMSKDAVSG-------TLRLFWTLLSKQEEMV--QKFVEEVLRINYKF 93
Query: 130 IEAGTRERPKFQTEPTLPIYLKFTDVTY---KVILKGMTSSEEK--DILNGITGSVNPGE 184
+ + + + Q +Y++ D Y +V K S + + + + P +
Sbjct: 94 LMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL-ELRPAK 151
Query: 185 VLALMGPSGSGKTTLLN--LLSGRLMEPTVGG----SITYNDHPYS--KSLKSKIGFVTQ 236
+ + G GSGKT + LS ++ ++ + P + + L+ + +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 237 DDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI----DV-----INELGLERCQDTM 287
+ + L ++ L K + + + +V N L C+ +
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL-SCK-IL 269
Query: 288 I---GGSFVRGVSGGERKRVCIGNEII-INP----SLL--FLDEPTSGL---DSTTALRI 334
+ +S + + + + + P SLL +LD L TT R
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 335 VQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSSIG--- 391
+ + IAE+ + + T K +I + SL + +E F +
Sbjct: 330 LSI---IAESIRDGLATWDNWKHVNCDKLTTII---ESSLNVL-EPAEYRKMFDRLSVFP 382
Query: 392 ----------------CSPQIAMNPAEFLLD--LANGN-------LHDVSVPSELQDRVQ 426
M L L + + ++
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS------IYLELK 436
Query: 427 TENSENDTANGKPTPAIVHEYLVEAYET--------------------------RVAEN- 459
+ EN+ A +H +V+ Y + E+
Sbjct: 437 VKL-ENEYA--------LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 460 EKKKLMAPIPLDEE-IKAKVSSPKRNWGASWIQQYTIL--------FRRGIKEHRHDY 508
E+ L + LD ++ K+ R+ +W +IL ++ I ++ Y
Sbjct: 488 ERMTLFRMVFLDFRFLEQKI----RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 6e-12
Identities = 55/234 (23%), Positives = 96/234 (41%), Gaps = 44/234 (18%)
Query: 166 SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
+ + LNGIT S+ G ++A++G G GK++LL+ L + V G +
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM--DKVEGHV--------- 62
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL-TKQQKEKRAIDVINELGLERCQ 284
++K + +V Q + + +++E N L Q +E VI L
Sbjct: 63 AIKGSVAYVPQQAWIQ-NDSLRE-----------NILFGCQLEEPYYRSVIQACALLP-- 108
Query: 285 D---------TMIGGSFVRGV--SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALR 333
D T IG +GV SGG+++RV + + N + D+P S +D+
Sbjct: 109 DLEILPSGDRTEIGE---KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH 165
Query: 334 IVQ--MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
I + + KT + H S + D +I++ G + G E +A
Sbjct: 166 IFENVIGPKGMLKNKTRILVTHSMS--YLPQVDVIIVMSGGKISEMGSYQELLA 217
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 1e-09
Identities = 40/264 (15%), Positives = 79/264 (29%), Gaps = 21/264 (7%)
Query: 121 FSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFTDVTYKVILKGMTSSEEKDILNGITGSV 180
F D I R K + + + +K + + + K I + +
Sbjct: 75 FEKDGTKYRIT---RRFLKGYSSGEIHAMKRLVGNEWKHVTEPSS----KAISAFMEKLI 127
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVL 240
L + +L R ++ + Y K + K G ++++
Sbjct: 128 PYNIFLNAIYIRQGQIDAILESDEAREKVVREVLNLDKFETAYKKLSELKGGSGGTEELI 187
Query: 241 FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGV---- 296
K AAL ++ ++ E + + +
Sbjct: 188 EKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLT 247
Query: 297 --SGGERKRVC------IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 307
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H L D +I +
Sbjct: 308 ILVSHDEE--LKDAADHVIRISLE 329
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 2e-08
Identities = 26/144 (18%), Positives = 48/144 (33%), Gaps = 21/144 (14%)
Query: 237 DDVLFPHLTVKETLTY-AALLRLPNTLTKQQKEKRAIDV-INELGLERCQDTMIGGSFVR 294
+ L + A + + E+ + + + G ER +
Sbjct: 8 EAAL--SKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFL------- 58
Query: 295 GVSGGERKRVCIGNEI------IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV 348
SGGER + + + SLL LDEPT LD +++ +++ + V
Sbjct: 59 --SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 349 VTTIHQPSSRLFHKFDKLILLGKG 372
+ H L D +I +
Sbjct: 117 ILVSHDEE--LKDAADHVIRISLE 138
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 640 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.92 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.87 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.87 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.86 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.85 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.84 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.84 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.84 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.84 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.83 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.82 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.82 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.81 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.8 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.79 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.78 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.78 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.77 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.77 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.76 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.76 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.76 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.76 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.72 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.72 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.72 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.71 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.71 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.7 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.7 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.69 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.68 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.66 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.66 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.65 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.63 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.61 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.58 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.57 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.57 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.54 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.53 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.51 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.51 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.5 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.48 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.47 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.44 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.44 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.44 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.42 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.42 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.42 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.41 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.41 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.37 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.35 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.34 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.33 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.32 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.32 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.28 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.27 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.26 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.24 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.22 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.22 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.11 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.08 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.07 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.02 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.02 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.02 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.97 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.97 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.93 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.9 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.88 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.86 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.85 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.83 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.83 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.82 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.82 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.81 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.79 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.63 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.61 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.57 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.54 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.53 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.49 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.48 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.45 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.4 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.34 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.28 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.27 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.26 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.23 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.23 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.22 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.2 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.2 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.16 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.15 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.15 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.09 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.05 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.01 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.01 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.01 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.01 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.94 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.91 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.87 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.83 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.83 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.82 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.75 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.74 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.68 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.67 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.62 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.62 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.55 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.55 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.53 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.48 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.48 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.47 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.46 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.46 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.44 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.43 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.34 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.29 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.28 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.26 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.23 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.2 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.19 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.19 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 97.16 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 97.15 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.11 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.06 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.05 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.04 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.03 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 97.03 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.01 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.99 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.97 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.86 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.83 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.82 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.8 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.79 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.77 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.75 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.72 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.68 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.68 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.64 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.49 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.48 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.46 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.46 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.45 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.43 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.42 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.42 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.34 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.33 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.23 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.22 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.21 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.17 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.15 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.13 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.12 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.12 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.11 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.1 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.06 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.06 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.97 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.95 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.95 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.91 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.89 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.81 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.79 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.78 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.77 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.77 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.77 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.76 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.75 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.71 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.68 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.67 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 95.67 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.63 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.59 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.59 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.56 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.47 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.45 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.44 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.42 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.4 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.4 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.21 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.2 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 95.2 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.17 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.13 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.12 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.1 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.09 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.09 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 95.09 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.06 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.04 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.04 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.03 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.0 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.99 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.97 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.96 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.96 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.94 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.93 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.9 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.89 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.88 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.88 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.87 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.85 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.85 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.85 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.85 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.84 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.82 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.81 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.79 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.79 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.77 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 94.76 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.76 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.76 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.72 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.72 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.7 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.68 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.68 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.67 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.66 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.66 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.64 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.62 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.62 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.62 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.61 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.61 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.6 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.59 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.59 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.59 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.57 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.57 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.52 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.48 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.44 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.44 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 94.44 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 94.42 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.42 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 94.41 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 94.38 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 94.34 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 94.34 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.3 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 94.3 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.25 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.24 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 94.23 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.22 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.2 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.2 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 94.19 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 94.17 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.17 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.15 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.14 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.12 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.12 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.11 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.1 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 94.09 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.08 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.06 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.06 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.05 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 94.05 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.05 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.04 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.03 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.02 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.01 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.01 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 94.01 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 93.98 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.95 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.91 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.91 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.91 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.89 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.88 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.86 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.86 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.84 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.83 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.82 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.82 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.81 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.78 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.77 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.77 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.76 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.75 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.75 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.75 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.73 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.73 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.72 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.71 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 93.71 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.7 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.7 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.67 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 93.66 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 93.63 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.62 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.61 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.6 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.59 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.59 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.52 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.5 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 93.45 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.42 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.38 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 93.38 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.36 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.33 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 93.31 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.26 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 93.22 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 93.2 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 93.19 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.16 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.15 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 93.11 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.09 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 93.09 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 93.08 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.08 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 93.07 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 93.07 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.03 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 93.02 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.97 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.95 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 92.89 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 92.88 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.86 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.78 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 92.72 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.68 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.65 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 92.64 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.62 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.6 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 92.59 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 92.55 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 92.51 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 92.5 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.49 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.48 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.37 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 92.3 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 92.24 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.15 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 92.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.02 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 91.79 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 91.53 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.53 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 91.47 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.42 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.4 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 91.35 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.34 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.3 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 91.15 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 91.12 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 90.34 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 90.95 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 90.93 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 90.89 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 90.68 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 90.68 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.66 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 90.47 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 90.46 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 90.35 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 90.34 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 90.22 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 90.2 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 90.17 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-50 Score=429.58 Aligned_cols=222 Identities=24% Similarity=0.401 Sum_probs=196.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
.+|+++||+++|..+ .+..++|+||||+|++||++||+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 23 ~mi~v~~ls~~y~~~----~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~ 96 (366)
T 3tui_C 23 HMIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLS 96 (366)
T ss_dssp CCEEEEEEEEEEECS----SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCC
T ss_pred ceEEEEeEEEEeCCC----CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCC
Confidence 379999999999421 124579999999999999999999999999999999999653 569999999999852
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..|++||||||++.+++.+||+||+.|+...+ ..++++.++++.++++.+||.+..+. ++.+|||||
T Consensus 97 ~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~-----~~~~LSGGq 168 (366)
T 3tui_C 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQ 168 (366)
T ss_dssp HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTC-----CTTTSCHHH
T ss_pred HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHH
Confidence 24678999999999999999999999987654 24567778889999999999877665 467899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||++. .+.++||||++|++|++++.|+
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999975 4999999999975 5778999999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 248 ~~ev~ 252 (366)
T 3tui_C 248 VSEVF 252 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99975
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=406.39 Aligned_cols=222 Identities=29% Similarity=0.450 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ ...+++|+||||+|++||++||+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 1 ~l~~~~l~~~y~~~----~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 74 (235)
T 3tif_A 1 MVKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDD 74 (235)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred CEEEEEEEEEeCCC----CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCH
Confidence 37899999999421 123579999999999999999999999999999999999653 569999999998752
Q ss_pred -h---c-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc-cccccCccCCcCCHH
Q 006571 226 -S---L-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ-DTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 -~---~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~t~vg~~~~~~LSGG 299 (640)
. . ++.||||+|++.+++.+||+||+.++...+.....+.++..+++.++++.++|.+.. +. .+.+||||
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~~LSgG 149 (235)
T 3tif_A 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANH-----KPNQLSGG 149 (235)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTC-----CGGGSCHH
T ss_pred HHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhC-----ChhhCCHH
Confidence 1 1 346999999999999999999999987543222345666777899999999997643 43 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. +.++||+|++|++|++++.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~G~i~~~~ 227 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREE 227 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999765 999999999975 45889999999999999999
Q ss_pred ChHHH
Q 006571 379 KASEA 383 (640)
Q Consensus 379 ~~~~~ 383 (640)
+++++
T Consensus 228 ~~~~~ 232 (235)
T 3tif_A 228 KLRGF 232 (235)
T ss_dssp ECC--
T ss_pred Chhhh
Confidence 88764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-49 Score=410.50 Aligned_cols=218 Identities=26% Similarity=0.479 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y--------~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~ 93 (263)
T 2olj_A 24 MIDVHQLKKSF--------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDT 93 (263)
T ss_dssp SEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTC
T ss_pred eEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccc
Confidence 69999999998 34679999999999999999999999999999999999653 56899999999873
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..++++||||+|++.+++.+||+||+.++. ... ..+..+.+++++++++.+||.+..+.. +.+||||||
T Consensus 94 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqk 165 (263)
T 2olj_A 94 NLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAY-----PDSLSGGQA 165 (263)
T ss_dssp CHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSC-----GGGSCHHHH
T ss_pred cHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHH
Confidence 124567999999999999999999999964 322 234455567889999999998776654 568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+.++||+|++|++|++++.|+++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 244 (263)
T 2olj_A 166 QRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEGKPE 244 (263)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999877999999999965 467789999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 245 ~~~~ 248 (263)
T 2olj_A 245 DLFD 248 (263)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8753
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-50 Score=411.06 Aligned_cols=217 Identities=28% Similarity=0.471 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---- 224 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.
T Consensus 6 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (262)
T 1b0u_A 6 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 75 (262)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEEC
T ss_pred eEEEeeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccc
Confidence 59999999998 34679999999999999999999999999999999999653 56899999999875
Q ss_pred -------------hhccCcEEEEccCCCCCCCCCHHHHHHHHH-hccCCCCccHHHHHHHHHHHHHHcCCCcc-cccccc
Q 006571 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAA-LLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIG 289 (640)
Q Consensus 225 -------------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg 289 (640)
..+++.+|||+|++.+++.+||+||+.++. ..+ ..+..+.+++++++++.+||.+. .+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-- 150 (262)
T 1b0u_A 76 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKY-- 150 (262)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSC--
T ss_pred ccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCC--
Confidence 124567999999999999999999999964 322 23445556788999999999876 6653
Q ss_pred CccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||+|++|
T Consensus 151 ---~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l 226 (262)
T 1b0u_A 151 ---PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFL 226 (262)
T ss_dssp ---GGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999877999999999965 467789999999
Q ss_pred cCCeEEEecChHHHH
Q 006571 370 GKGSLLYFGKASEAM 384 (640)
Q Consensus 370 ~~G~iv~~G~~~~~~ 384 (640)
++|++++.|+++++.
T Consensus 227 ~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 227 HQGKIEEEGDPEQVF 241 (262)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998875
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-50 Score=413.25 Aligned_cols=218 Identities=29% Similarity=0.536 Sum_probs=191.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--h-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--~- 225 (640)
.|+++||+++|. +.+.+|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. .
T Consensus 7 ~l~i~~ls~~y~-------~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~ 77 (275)
T 3gfo_A 7 ILKVEELNYNYS-------DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRK 77 (275)
T ss_dssp EEEEEEEEEECT-------TSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHH
T ss_pred EEEEEEEEEEEC-------CCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccc
Confidence 699999999982 23459999999999999999999999999999999999653 56899999999983 1
Q ss_pred ---hccCcEEEEccCC--CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ---SLKSKIGFVTQDD--VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ---~~~~~i~yV~Q~~--~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.+++.||||||++ .++ .+||+||+.|+.... ..+.++..++++++++.+||.+..+.. +.+|||||
T Consensus 78 ~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq 148 (275)
T 3gfo_A 78 GIMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKP-----THCLSFGQ 148 (275)
T ss_dssp HHHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHH
T ss_pred cHHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHH
Confidence 3567899999986 345 689999999987643 345667778899999999998777654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++||++.. +.++||+|++|++|++++.|+
T Consensus 149 kQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~-~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 149 KKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSS-GGGGCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999997 569999999999764 678899999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 228 ~~~~~~ 233 (275)
T 3gfo_A 228 PKEVFA 233 (275)
T ss_dssp HHHHTH
T ss_pred HHHHhc
Confidence 998754
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=427.67 Aligned_cols=218 Identities=28% Similarity=0.478 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------g~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~ 72 (381)
T 3rlf_A 3 SVQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPP 72 (381)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCH
Confidence 48999999998 45679999999999999999999999999999999999653 569999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||.+||+|||.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~p~~LSGGqrQRVai 144 (381)
T 3rlf_A 73 AERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDR-----KPKALSGGQRQRVAI 144 (381)
T ss_dssp GGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTC-----CGGGSCHHHHHHHHH
T ss_pred HHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcC-----ChhHCCHHHHHHHHH
Confidence 4578999999999999999999999987654 34667778889999999999877665 457999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||++||+..+.++.+.|+++.++ |+|+|++|||+. ++..+||||++|++|+++..|+++++..
T Consensus 145 ArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 145 GRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp HHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999965 5788999999999999999999999854
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-50 Score=426.99 Aligned_cols=218 Identities=27% Similarity=0.456 Sum_probs=193.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC----C
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY----S 224 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~----~ 224 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++ .
T Consensus 4 ~l~i~~ls~~y--------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~ 73 (359)
T 3fvq_A 4 ALHIGHLSKSF--------QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNT 73 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSC
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECccccc
Confidence 58999999998 45679999999999999999999999999999999999653 5699999999987 2
Q ss_pred --hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 225 --KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 225 --~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
...++.||||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||
T Consensus 74 ~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~Q 145 (359)
T 3fvq_A 74 NLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGR-----YPHELSGGQQQ 145 (359)
T ss_dssp BCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTS-----CGGGSCHHHHH
T ss_pred ccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHH
Confidence 134678999999999999999999999986543 23455667789999999999887765 45799999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||+|||||+.+|++|||||||+|||+..+.++.+.|+++. +.|+|||++|||+. ++..+||||++|++|+|+..|+++
T Consensus 146 RValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~ 224 (359)
T 3fvq_A 146 RAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASPH 224 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEeCHH
Confidence 9999999999999999999999999999999999888875 46999999999965 578899999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 225 el~~ 228 (359)
T 3fvq_A 225 ELYR 228 (359)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9854
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-49 Score=404.90 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=192.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 15 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 15 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHH
T ss_pred eEEEEEEEEEE--------CCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998753
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.||||+|++.+++.+||+||+.++.... ....++..++++++++.+||.+..++. +..|||||||||+
T Consensus 85 ~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~LSgGq~qRv~ 156 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLL 156 (256)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHH
T ss_pred HHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCC-----hhhCCHHHHHHHH
Confidence 35678999999999999999999999876432 123444556788999999998777654 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++. .+..+||++++|++|++++.|+++++.+
T Consensus 157 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999999999877999999999975 4667899999999999999999998864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-49 Score=396.45 Aligned_cols=211 Identities=30% Similarity=0.434 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 4 ~l~~~~l~~~y--------~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 73 (224)
T 2pcj_A 4 ILRAENIKKVI--------RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNE 73 (224)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCH
T ss_pred EEEEEeEEEEE--------CCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998742
Q ss_pred ----hcc-CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 ----SLK-SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 ----~~~-~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
.++ +.|+||+|++.+++.+||+||+.++...+ ..+..+.+++++++++.+||.+..+.. +.+|||||
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq 145 (224)
T 2pcj_A 74 KELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRK-----PYELSGGE 145 (224)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCC-----GGGSCHHH
T ss_pred HHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHH
Confidence 123 67999999999999999999999976543 233445567789999999998776654 56899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+ +.||++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999999999877999999999965 34 8899999999999999986
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=405.54 Aligned_cols=218 Identities=25% Similarity=0.397 Sum_probs=189.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 7 ~l~i~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~ 76 (257)
T 1g6h_A 7 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEP 76 (257)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred EEEEeeeEEEE--------CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhc-cCCC---------CccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALL-RLPN---------TLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
..++.||||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++. +
T Consensus 77 ~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 151 (257)
T 1g6h_A 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 151 (257)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC-----c
Confidence 2356799999999999999999999987532 1110 012234456788999999998776654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +.++||+|++|++|+
T Consensus 152 ~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~d~v~~l~~G~ 230 (257)
T 1g6h_A 152 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQ 230 (257)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST-TGGGCSEEEEEETTE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH-HHHhCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999998779999999999764 668899999999999
Q ss_pred EEEecChHH
Q 006571 374 LLYFGKASE 382 (640)
Q Consensus 374 iv~~G~~~~ 382 (640)
+++.|++++
T Consensus 231 i~~~g~~~~ 239 (257)
T 1g6h_A 231 IIAEGRGEE 239 (257)
T ss_dssp EEEEEESHH
T ss_pred EEEEeCHHH
Confidence 999999988
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=418.42 Aligned_cols=218 Identities=26% Similarity=0.496 Sum_probs=193.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (359)
T 2yyz_A 3 SIRVVNLKKYF--------GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPP 72 (359)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCCh
Confidence 48999999998 34679999999999999999999999999999999999653 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSgGq~QRval 144 (359)
T 2yyz_A 73 KYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDR-----KPTQLSGGQQQRVAL 144 (359)
T ss_dssp GGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHHHHHHHHH
Confidence 4678999999999999999999999976432 23445556789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 145 ARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999764 999999999965 5778999999999999999999999853
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=418.26 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=194.1
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 72 (362)
T 2it1_A 3 EIKLENIVKKF--------GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPP 72 (362)
T ss_dssp CEEEEEEEEES--------SSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred EEEEEeEEEEE--------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCH
Confidence 48999999998 34679999999999999999999999999999999999653 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 73 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 144 (362)
T 2it1_A 73 KDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNR-----YPWQLSGGQQQRVAI 144 (362)
T ss_dssp GGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTC-----CGGGSCHHHHHHHHH
T ss_pred hHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999987543 23456667789999999999887665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||||||+.++..+.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|+++++..
T Consensus 145 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 145 ARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp HHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999754 999999999965 5778999999999999999999999853
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=415.92 Aligned_cols=220 Identities=25% Similarity=0.473 Sum_probs=195.2
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|. +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 13 ~~l~~~~l~~~y~-------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 13 MTIEFVGVEKIYP-------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp EEEEEEEEEECCT-------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCC
T ss_pred ceEEEEEEEEEEc-------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCC
Confidence 4799999999871 24579999999999999999999999999999999999653 569999999999853
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.||||+|++.+||.+||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+
T Consensus 84 ~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r-----~~~~LSGGq~QRva 155 (355)
T 1z47_A 84 PQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANR-----FPHELSGGQQQRVA 155 (355)
T ss_dssp GGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHHHHHH
T ss_pred hhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----CcccCCHHHHHHHH
Confidence 34678999999999999999999999987643 23456667889999999999877665 45789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|||++|||+. ++..+||+|++|++|+++..|+++++.
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~ 234 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTPEEVY 234 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999999764 999999999965 577899999999999999999999985
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 235 ~ 235 (355)
T 1z47_A 235 E 235 (355)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-49 Score=398.95 Aligned_cols=216 Identities=25% Similarity=0.404 Sum_probs=186.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 6 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~ 75 (240)
T 1ji0_A 6 VLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPA 75 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred eEEEEeEEEEE--------CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCH
Confidence 69999999998 34679999999999999999999999999999999999653 568999999998752
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-CCccccccccCccCCcCCHHHHH
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-LERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~t~vg~~~~~~LSGGqrq 302 (640)
. .++.||||+|++.+++.+||+||+.++.... ...++..++++++++.++ |.+..+. .+..|||||||
T Consensus 76 ~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~-----~~~~LSgGq~q 146 (240)
T 1ji0_A 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQ-----LGGTLSGGEQQ 146 (240)
T ss_dssp HHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTS-----BSSSSCHHHHH
T ss_pred HHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcC-----ChhhCCHHHHH
Confidence 1 2456999999999999999999999864211 112234566788899994 8766554 45789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. ++.++||+|++|++|++++.|++++
T Consensus 147 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~~ 225 (240)
T 1ji0_A 147 MLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 999999999999999999999999999999999999999877999999999964 4678999999999999999999988
Q ss_pred HH
Q 006571 383 AM 384 (640)
Q Consensus 383 ~~ 384 (640)
+.
T Consensus 226 ~~ 227 (240)
T 1ji0_A 226 LL 227 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=418.30 Aligned_cols=218 Identities=28% Similarity=0.481 Sum_probs=193.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~ 72 (372)
T 1g29_1 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72 (372)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGG
T ss_pred EEEEEeEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccc
Confidence 58999999998 34679999999999999999999999999999999999653 568999999998632
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq 144 (372)
T 1g29_1 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (372)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred cccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcC-----CcccCCHHH
Confidence 23578999999999999999999999987643 23456667789999999999877665 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|+
T Consensus 145 ~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~ 223 (372)
T 1g29_1 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (372)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999764 999999999965 5778999999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 224 ~~~l~~ 229 (372)
T 1g29_1 224 PDEVYD 229 (372)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999853
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=418.07 Aligned_cols=218 Identities=27% Similarity=0.492 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeecccccccccc--ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKD--ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~--iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~- 225 (640)
+|+++||+++| ++++ +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~y--------~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~ 72 (353)
T 1oxx_K 3 RIIVKNVSKVF--------KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASN 72 (353)
T ss_dssp CEEEEEEEEEE--------GGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEET
T ss_pred EEEEEeEEEEE--------CCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECccc
Confidence 48999999998 3456 9999999999999999999999999999999999653 568999999998632
Q ss_pred ------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH
Q 006571 226 ------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG 299 (640)
..++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+||||
T Consensus 73 ~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~-----~~~~LSGG 144 (353)
T 1oxx_K 73 GKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGA 144 (353)
T ss_dssp TEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHH
T ss_pred ccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcC-----ChhhCCHH
Confidence 34678999999999999999999999986432 24556667789999999999887765 45789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++..+||+|++|++|+++..|
T Consensus 145 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999754 999999999965 577899999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+++++..
T Consensus 224 ~~~~l~~ 230 (353)
T 1oxx_K 224 KPEDLYD 230 (353)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999853
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=402.10 Aligned_cols=215 Identities=26% Similarity=0.405 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||++.| +++++|+||||+|++||++||+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~--------~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~ 80 (266)
T 4g1u_C 11 LLEASHLHYHV--------QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQP 80 (266)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCH
T ss_pred eEEEEeEEEEe--------CCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCH
Confidence 69999999998 45689999999999999999999999999999999999653 568999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.++|.+..+.. +.+|||||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~QRv 150 (266)
T 4g1u_C 81 KALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRD-----YRVLSGGEQQRV 150 (266)
T ss_dssp HHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSB-----GGGCCHHHHHHH
T ss_pred HHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCC-----cccCCHHHHHHH
Confidence 34567999999999888899999999876432 1123456788999999998877654 468999999999
Q ss_pred HHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEIII------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~~------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||+|++|++|++++.
T Consensus 151 ~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~i~~~ 229 (266)
T 4g1u_C 151 QLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVAC 229 (266)
T ss_dssp HHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCEEEEE
Confidence 99999999 99999999999999999999999999999765 579999999965 47789999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 230 g~~~~~~ 236 (266)
T 4g1u_C 230 GTPEEVL 236 (266)
T ss_dssp ECHHHHC
T ss_pred cCHHHHh
Confidence 9999874
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=417.78 Aligned_cols=218 Identities=26% Similarity=0.471 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 11 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~ 80 (372)
T 1v43_A 11 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 80 (372)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE--------CCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCCh
Confidence 49999999998 34679999999999999999999999999999999999653 568999999999753 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+ ..++++.+++++++++.+||.+..+. ++.+|||||||||+|
T Consensus 81 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r-----~~~~LSGGq~QRval 152 (372)
T 1v43_A 81 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 152 (372)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHHHHHHHH
Confidence 3578999999999999999999999975432 23556667789999999999877665 457899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||+. ++..+||+|++|++|+++..|+++++..
T Consensus 153 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 153 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999999999999999999765 999999999965 5778999999999999999999999853
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=409.00 Aligned_cols=215 Identities=29% Similarity=0.501 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+|+|+ +.+++|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 52 ~~i~~~~vs~~y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~G~~i~~~~ 122 (306)
T 3nh6_A 52 GRIEFENVHFSYA-------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-D-ISSGCIRIDGQDISQVT 122 (306)
T ss_dssp CCEEEEEEEEESS-------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-C-CSEEEEEETTEETTSBC
T ss_pred CeEEEEEEEEEcC-------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-C-CCCcEEEECCEEcccCC
Confidence 3699999999982 2457999999999999999999999999999999999854 3 468999999999853
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC-------CCccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG-------LERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~L 296 (640)
.+|++||||+|++.+|+ .||+|||.|+... ...+ ++.++++..+ +++..++.+|. ....|
T Consensus 123 ~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~~L 191 (306)
T 3nh6_A 123 QASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGND----EVEAAAQAAGIHDAIMAFPEGYRTQVGE-RGLKL 191 (306)
T ss_dssp HHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCHH----HHHHHHHHHTCHHHHHHSTTGGGCEEST-TSBCC
T ss_pred HHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCHH----HHHHHHHHhCcHHHHHhccchhhhHhcC-CcCCC
Confidence 46788999999999996 5999999987421 1222 1222333322 34566777764 45679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+.+|+||||||||++||+.++..|++.|+++.+ ++|||+++|+++. + ..||+|++|++|+|++
T Consensus 192 SGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~-~~aD~i~vl~~G~iv~ 268 (306)
T 3nh6_A 192 SGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-V-VNADQILVIKDGCIVE 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-H-HTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-H-HcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 7999999999764 4 4599999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|++++++.
T Consensus 269 ~G~~~el~~ 277 (306)
T 3nh6_A 269 RGRHEALLS 277 (306)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999999875
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=396.21 Aligned_cols=219 Identities=25% Similarity=0.420 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeecccccccc---ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEE---KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~---~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
+|+++||+++|.. ++ +++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~------~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHR------GTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEEST------TSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecC------CCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECch
Confidence 4899999999820 12 579999999999999999999999999999999999653 568999999998864
Q ss_pred -hccCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC--ccccccccCccCCcCCHHHH
Q 006571 226 -SLKSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE--RCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 -~~~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~t~vg~~~~~~LSGGqr 301 (640)
.+++.||||+|++ .+++.+||+||+.++.... .+.++.+++++++++.+||. +..++. +.+||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGq~ 144 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRV-----PFFLSGGEK 144 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCC-----GGGSCHHHH
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCC-----hhhCCHHHH
Confidence 3567899999995 4566789999999875321 11122345688899999998 766654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||++++|++|++++.|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~-~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT-TGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998779999999999764 66789999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++..
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=411.50 Aligned_cols=213 Identities=29% Similarity=0.498 Sum_probs=188.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
+|+++||+++| +++ +|+||||+|++||+++|+||||||||||||+|+|... +++|+|.++|+++.. .
T Consensus 1 ml~~~~l~~~y--------~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~ 69 (348)
T 3d31_A 1 MIEIESLSRKW--------KNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP 69 (348)
T ss_dssp CEEEEEEEEEC--------SSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEE--------CCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCch
Confidence 37899999998 345 9999999999999999999999999999999999653 568999999999853 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.++.||||+|++.+||++||+||+.|+...+. .++. ++++++++.++|.+..+.. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~-----~~~LSgGq~QRval 138 (348)
T 3d31_A 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (348)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHH
Confidence 46789999999999999999999999875431 1111 6788999999998877654 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|+|++||++. ++..+||+|++|++|+++..|+++++.
T Consensus 139 AraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999975 4999999999964 577899999999999999999999885
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=459.72 Aligned_cols=353 Identities=21% Similarity=0.272 Sum_probs=245.8
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.+++.++..+...|.+...++||+|+.+..+.+++.+..........+.....+...........-..+.-++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g 268 (587)
T 3qf4_A 189 PLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678888888999999999999999999988888888766544433221100000000000000011112234567
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccc------------ccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPD------------EIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.++++..+.. |.. ..+..+.....+.++..+.. ......+.....|++
T Consensus 269 ~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~----~~~~~~~~~~~~i~~ 344 (587)
T 3qf4_A 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEA----DNALALPNVEGSVSF 344 (587)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCC----TTCBCCSCCCCCEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCC----CCccccCCCCCcEEE
Confidence 7777777777776665543221 111 11111111111101100000 000011122346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+||+|++||++||+||||||||||+|+|+|.+ + +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~-~~~G~i~i~g~~i~~~~~~~~r 416 (587)
T 3qf4_A 345 ENVEFRYF------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-D-PERGRVEVDELDVRTVKLKDLR 416 (587)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-C-CSEEEEEESSSBGGGBCHHHHH
T ss_pred EEEEEEcC------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-c-CCCcEEEECCEEcccCCHHHHH
Confidence 99999983 23567999999999999999999999999999999999854 3 468999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++|+||+|++.+|+. ||+|||.++.. ..++++..+. +++.++ .+++..++.+|. .+.+||||||||
T Consensus 417 ~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~~~~-~~~~LSgGqrQr 487 (587)
T 3qf4_A 417 GHISAVPQETVLFSG-TIKENLKWGRE-----DATDDEIVEAAKIAQIHDFII--SLPEGYDSRVER-GGRNFSGGQKQR 487 (587)
T ss_dssp HHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHHHHHHHHHTTCHHHHH--TSSSGGGCEECS-SSCSSCHHHHHH
T ss_pred hheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHHHHHHHHHhCcHHHHH--hcccchhhHhcC-CCCCcCHHHHHH
Confidence 889999999999975 99999987632 1222222111 222332 456678888875 456799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. ...||+|++|++|++++.|+++|+
T Consensus 488 v~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999975 58999999999764 468999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 565 ~~ 566 (587)
T 3qf4_A 565 LE 566 (587)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-50 Score=456.10 Aligned_cols=351 Identities=24% Similarity=0.337 Sum_probs=248.6
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++..++..+...|.+...++||+|+.+..+.+++.+..........+.....+...........-..+.-+..|
T Consensus 187 ~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g 266 (578)
T 4a82_A 187 KLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVG 266 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888899999999999999999988888888766554443322111111110001111111123334577
Q ss_pred hhHhhhhhhhhhhhhccccCC----CCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFT----MPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~----~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.++++..+. .|...+ +..+.+...+.+++.+... .....+.....|++
T Consensus 267 ~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~----~~~~~~~~~~~i~~ 342 (578)
T 4a82_A 267 AYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGV----GAQPIEIKQGRIDI 342 (578)
T ss_dssp HHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCT----TCCCCCCCSCCEEE
T ss_pred HHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC----CccccCCCCCeEEE
Confidence 777777777777777665432 121111 1111111111111111000 00011112346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+||+|++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 343 ~~v~~~y~------~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~r 414 (578)
T 4a82_A 343 DHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D-VTSGQILIDGHNIKDFLTGSLR 414 (578)
T ss_dssp EEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-C-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEEcC------CCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-C-CCCcEEEECCEEhhhCCHHHHh
Confidence 99999983 23467999999999999999999999999999999999854 3 468999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~LSGGqr 301 (640)
+++|||+|++.+|+. ||+||+.++.. ..++++ +.+.++.. .+++..+|.+|.. ..+||||||
T Consensus 415 ~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~~~~lp~g~~t~~~~~-g~~LSgGq~ 483 (578)
T 4a82_A 415 NQIGLVQQDNILFSD-TVKENILLGRP-----TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER-GVKLSGGQK 483 (578)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHGGGCS-----SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTSCHHHH
T ss_pred hheEEEeCCCccCcc-cHHHHHhcCCC-----CCCHHH----HHHHHHHhCcHHHHHhCcchhhhhhccC-CCcCCHHHH
Confidence 889999999999976 99999998631 112222 23333332 3566788888754 567999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|++|+|||||||||+.++..+.+.|+++. +++|+|+++|+++. + +.||+|++|++|++++.|+++
T Consensus 484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999885 47999999999875 4 669999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+.+
T Consensus 561 el~~ 564 (578)
T 4a82_A 561 ELIA 564 (578)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9874
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=392.66 Aligned_cols=220 Identities=24% Similarity=0.297 Sum_probs=180.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~ 74 (250)
T 2d2e_A 3 QLEIRDLWASI--------DGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74 (250)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCH
T ss_pred eEEEEeEEEEE--------CCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCH
Confidence 58999999998 3467999999999999999999999999999999999962123568999999998752
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCc-CCHHHH
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRG-VSGGER 301 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~-LSGGqr 301 (640)
. .++.++||+|++.+++.+||+||+.++............+..+++.++++.+||. +..++. +.. ||||||
T Consensus 75 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~LSgGqk 149 (250)
T 2d2e_A 75 DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRY-----LNEGFSGGEK 149 (250)
T ss_dssp HHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSB-----TTCC----HH
T ss_pred HHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCCCHHHH
Confidence 1 2456999999999999999999999865321111122334456788999999994 666654 456 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++. .+... ||+|++|++|++++.|++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~~~g~~ 228 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVVATGGP 228 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEEEEeCH
Confidence 9999999999999999999999999999999999999999767999999999975 35566 599999999999999998
Q ss_pred HH
Q 006571 381 SE 382 (640)
Q Consensus 381 ~~ 382 (640)
+.
T Consensus 229 ~~ 230 (250)
T 2d2e_A 229 EL 230 (250)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=389.19 Aligned_cols=212 Identities=25% Similarity=0.432 Sum_probs=184.7
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++| ++ +|+||||+|++ |+++|+||||||||||+|+|+|.+. +.+|+|.++|+++.. ..
T Consensus 2 l~~~~l~~~y--------~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 68 (240)
T 2onk_A 2 FLKVRAEKRL--------GN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp CEEEEEEEEE--------TT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT
T ss_pred EEEEEEEEEe--------CC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchh
Confidence 6899999998 22 59999999999 9999999999999999999999653 568999999998753 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+++||||+|++.+++.+||+||+.++...+ . ....+++++++++.+||.+..+.. +.+|||||||||+||
T Consensus 69 ~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNV---E--RVERDRRVREMAEKLGIAHLLDRK-----PARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCTTS---C--HHHHHHHHHHHHHTTTCTTTTTCC-----GGGSCHHHHHHHHHH
T ss_pred hCcEEEEcCCCccCCCCcHHHHHHHHHHHc---C--CchHHHHHHHHHHHcCCHHHhcCC-----hhhCCHHHHHHHHHH
Confidence 678999999999999999999999864321 1 122356788999999998776654 568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. ++..+||++++|++|++++.|+++++..
T Consensus 139 ral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999754 999999999965 4678899999999999999999998753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-49 Score=449.57 Aligned_cols=350 Identities=21% Similarity=0.285 Sum_probs=249.1
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++...+..+...|.+...++||+|+.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 270 (582)
T 3b5x_A 191 KISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677778888899999999999999999999988888777655544332111111110011111111122234467
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Cccc------------cccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDE------------IADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.++.+..+.. |... .+..+.....+.+++.+. ... ..+.....|++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~-----~~~-~~~~~~~~i~~ 344 (582)
T 3b5x_A 271 SVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN-----GKY-EAERVNGEVDV 344 (582)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC-----CCC-CCCCCCCeEEE
Confidence 7777777777777766654321 1111 111111111111111100 000 01111346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+|+++++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b5x_A 345 KDVTFTYQ------GKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-D-VDSGSICLDGHDVRDYKLTNLR 416 (582)
T ss_pred EEEEEEcC------CCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-C-CCCCEEEECCEEhhhCCHHHHh
Confidence 99999982 11367999999999999999999999999999999999854 3 468999999998742 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqr 301 (640)
+++|||+|++.+|+. ||+|||.++.. + ..+ +++++++++.+++ +++.||.+|.. ..+||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~-~~~LSgGq~ 486 (582)
T 3b5x_A 417 RHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQR 486 (582)
T ss_pred cCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-CCcCCHHHH
Confidence 889999999999975 99999998631 1 122 2335555555554 34667777654 577999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|+||+|||||++||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||+|++|++|++++.|+++
T Consensus 487 qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999865 9999999999764 3 579999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 564 ~l~~ 567 (582)
T 3b5x_A 564 DLLA 567 (582)
T ss_pred HHHh
Confidence 9864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=453.26 Aligned_cols=351 Identities=24% Similarity=0.285 Sum_probs=249.3
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.+++..+..+...|.+...++||+|+.+....+++.+..........+.....+...........-..+.-+..|
T Consensus 203 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 282 (598)
T 3qf4_B 203 KYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFG 282 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677778888899999999999999999998888888766554443322111111110111111111122334577
Q ss_pred hhHhhhhhhhhhhhhccccCCCCcc----cc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTMPPD----EI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..+..+.|.++.+..+..... .+ +..+.....+.+++.+. +.....+.....|++
T Consensus 283 ~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~-----~~~~~~~~~~~~i~~ 357 (598)
T 3qf4_B 283 GWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDD-----PDAVELREVRGEIEF 357 (598)
T ss_dssp HHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC-----SSCCCCCSCCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-----CCCCCCCCCCCeEEE
Confidence 7788788888888887765443211 11 11111111221111110 000011112346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ +++++|+|+||+|++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 358 ~~v~~~y~-------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~-p~~G~i~~~g~~i~~~~~~~~r 428 (598)
T 3qf4_B 358 KNVWFSYD-------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-D-VDRGQILVDGIDIRKIKRSSLR 428 (598)
T ss_dssp EEEECCSS-------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-C-CSEEEEEETTEEGGGSCHHHHH
T ss_pred EEEEEECC-------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-C-CCCeEEEECCEEhhhCCHHHHH
Confidence 99999982 2457999999999999999999999999999999999854 3 468999999999853 467
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
+++|||+|++.+|+ .||+|||.++... .++++..+. .++.++ .+++..+|.+|.. ..+||||||||
T Consensus 429 ~~i~~v~Q~~~lf~-~tv~eni~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~g~~t~~~~~-g~~LSgGq~Qr 499 (598)
T 3qf4_B 429 SSIGIVLQDTILFS-TTVKENLKYGNPG-----ATDEEIKEAAKLTHSDHFIK--HLPEGYETVLTDN-GEDLSQGQRQL 499 (598)
T ss_dssp HHEEEECTTCCCCS-SBHHHHHHSSSTT-----CCTTHHHHHTTTTTCHHHHH--TSTTGGGCBCHHH-HTTSCHHHHHH
T ss_pred hceEEEeCCCcccc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhCCHHHHH--hccccccchhcCC-CCCCCHHHHHH
Confidence 88999999999997 4999999986321 111111111 123333 3466778887643 46799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
++|||||+++|+||+||||||+||+.++..+.+.|+++. +|+|+|+++|+++. + +.||+|++|++|++++.|+++|+
T Consensus 500 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 500 LAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp HHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSEEECSCHHHH
T ss_pred HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999986 59999999999874 4 56999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 577 ~~ 578 (598)
T 3qf4_B 577 IQ 578 (598)
T ss_dssp HH
T ss_pred Hh
Confidence 74
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=398.53 Aligned_cols=221 Identities=22% Similarity=0.373 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC--h
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--K 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~--~ 225 (640)
..|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. .
T Consensus 20 ~~l~~~~l~~~y--------~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~ 89 (279)
T 2ihy_A 20 MLIQLDQIGRMK--------QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVG 89 (279)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEccccc
Confidence 369999999998 34679999999999999999999999999999999999653 56899999999875 2
Q ss_pred ----hccCcEEEEccCCCC--CCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 ----SLKSKIGFVTQDDVL--FPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l--~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.++++||||+|++.+ .+.+||+||+.++...... .....++..++++++++.+||.+..+.. +.+|||
T Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSg 164 (279)
T 2ihy_A 90 YSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQY-----IGYLST 164 (279)
T ss_dssp CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCH
T ss_pred CCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCC-----hhhCCH
Confidence 356789999999764 2356999999986321000 0011233456788999999998776654 468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEE--EEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTV--VTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~Tv--I~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++||++. ++.++||+|++|++|++++
T Consensus 165 GqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 165 GEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999997669999 99999975 4667899999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 244 ~g~~~~~~ 251 (279)
T 2ihy_A 244 QGAVEDIL 251 (279)
T ss_dssp EEEHHHHC
T ss_pred ECCHHHHh
Confidence 99998763
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-47 Score=391.09 Aligned_cols=230 Identities=28% Similarity=0.351 Sum_probs=189.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|....++.+|+|.++|+++..
T Consensus 19 ~~l~~~~l~~~y--------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSV--------EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS 90 (267)
T ss_dssp -CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC
T ss_pred ceEEEEeEEEEE--------CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC
Confidence 369999999998 3467999999999999999999999999999999999964223468999999998742
Q ss_pred --hc-cCcEEEEccCCCCCCCCCHHHHHHHHHh-c---cCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCC-cC
Q 006571 226 --SL-KSKIGFVTQDDVLFPHLTVKETLTYAAL-L---RLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVR-GV 296 (640)
Q Consensus 226 --~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~-~---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~-~L 296 (640)
.. ++.|+||+|++.+++.+||.||+.+... . ......+.++..++++++++.+||. +..+.. +. +|
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~~L 165 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRS-----VNVGF 165 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSB-----TTTTC
T ss_pred HHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCC-----cccCC
Confidence 12 3459999999999999999999987542 1 1111123444566789999999996 445543 44 59
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhc-cCEEEEEcCCeEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHK-FDKLILLGKGSLL 375 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~-~D~i~vL~~G~iv 375 (640)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++||++.. +... ||++++|++|+++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~G~i~ 244 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQGRIV 244 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987679999999999753 5455 8999999999999
Q ss_pred EecChHHHHHHHHhcCC
Q 006571 376 YFGKASEAMAYFSSIGC 392 (640)
Q Consensus 376 ~~G~~~~~~~~f~~~g~ 392 (640)
+.|+++++.. .+..|+
T Consensus 245 ~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 245 KSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp EEECTTHHHH-HHTTTC
T ss_pred EEcCHHHHhh-hhhcch
Confidence 9999988753 344443
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=487.34 Aligned_cols=356 Identities=22% Similarity=0.281 Sum_probs=260.7
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
.+..++.++..++..+.++|.+++.++||+|+.+..+.++|.+...+....+.+.....+...........-..+..++.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (1321)
T 4f4c_A 261 STFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYI 340 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678888899999999999999999999999999999887766555433322222211111111111122334457
Q ss_pred hhhHhhhhhhhhhhhhccccCCC----Cc------------cccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGFTM----PP------------DEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|+.++..+..+.|.++++..+.. |. +..+..+.+...+.++.++...... .........|+
T Consensus 341 g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~---~~~~~~~g~I~ 417 (1321)
T 4f4c_A 341 GVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG---RKDMKIKGDIT 417 (1321)
T ss_dssp HHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC---CCCCCCCCCEE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc---ccCCCCCCcEE
Confidence 77788778777777766543221 11 1112222222222222222211110 01112234699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
|+||+|+|+ ..+++++|+|+||+|++|+.+||+||||||||||+++|.| +++ +.+|+|.+||.|+++ .+
T Consensus 418 ~~nvsF~Y~-----~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~-~~~-~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 418 VENVHFTYP-----SRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLR-YYD-VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp EEEEEECCS-----SSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTT-SSC-CSEEEEEETTEETTTSCHHHH
T ss_pred EEEeeeeCC-----CCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcc-ccc-cccCcccCCCccchhccHHHH
Confidence 999999984 2346789999999999999999999999999999999997 454 458999999999863 57
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|++||||+|++.+|.. ||+|||.|+.. ..++++..+. +++.++ .|+++.||.||++. ..|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~~v~~a~~~a~l~~~i~--~lp~G~~T~vGe~G-~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNC-TIEENISLGKE-----GITREEMVAACKMANAEKFIK--TLPNGYNTLVGDRG-TQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHHHHHHHHHHTTCHHHHH--HSTTTTSSEESSSS-CCCCHHHHH
T ss_pred hhcccccCCcceeeCC-chhHHHhhhcc-----cchHHHHHHHHHHccchhHHH--cCCCCCccEecCCC-CCCCHHHHH
Confidence 8899999999999975 99999998732 2233332222 233344 35889999999765 569999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
|++|||||++||+|||||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+|++.|+|+|
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~ive~Gth~e 638 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQVVEVGDHRA 638 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCeeeccCCHHH
Confidence 99999999999999999999999999999999999999875 8999999999885 58899999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 639 L~~ 641 (1321)
T 4f4c_A 639 LMA 641 (1321)
T ss_dssp HHT
T ss_pred HHH
Confidence 974
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-49 Score=451.12 Aligned_cols=350 Identities=20% Similarity=0.266 Sum_probs=245.2
Q ss_pred HhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchh
Q 006571 9 SLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSG 88 (640)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 88 (640)
+..++.++...+..+...|.+...++||+|+.+....+++.+..........+.....+...........-..+.-++.|
T Consensus 191 ~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 270 (582)
T 3b60_A 191 SISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAA 270 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888899999999999999999999988888776655444332111111110001111111112223455
Q ss_pred hhHhhhhhhhhhhhhccccCCC----Ccccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 89 AALSRASSASLGLSFSFTGFTM----PPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 89 ~~~~~~~~~~~g~~~~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
+.++..|..+.|.++.+..+.. |...+ +..+.... ++..+...+.....+.....|++
T Consensus 271 ~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~------l~~~~~~~~~~~~~~~~~~~i~~ 344 (582)
T 3b60_A 271 SFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAI------LDSEQEKDEGKRVIDRATGDLEF 344 (582)
T ss_dssp HSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHSCCSCCCCCBCCSCCCCCEEE
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCccCCCCCCCCCCCcEEE
Confidence 5555556666666665543221 11111 11111111 11110000000011112246999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+ .+++++|+|+|++|++||++||+||||||||||+|+|+|.. + +.+|+|.+||+++.+ .+|
T Consensus 345 ~~v~~~y~------~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~-p~~G~i~~~g~~~~~~~~~~~~ 416 (582)
T 3b60_A 345 RNVTFTYP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-D-IDEGHILMDGHDLREYTLASLR 416 (582)
T ss_dssp EEEEECSS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-C-CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEcC------CCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-C-CCCCeEEECCEEccccCHHHHH
Confidence 99999982 11267999999999999999999999999999999999854 3 468999999999853 457
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LSGGqr 301 (640)
++++||+|++.+|+. ||+|||.++.. + ..++ ++++++++.+++ +++.||.+|.. ..+||||||
T Consensus 417 ~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~ 486 (582)
T 3b60_A 417 NQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQR 486 (582)
T ss_dssp HTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHH
T ss_pred hhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHH
Confidence 789999999999975 99999998631 1 1222 334555555554 44677887754 578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||+|++|++|++++.|+++
T Consensus 487 qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b60_A 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGIIVERGTHS 563 (582)
T ss_dssp HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999999875 9999999999864 3 579999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
++.+
T Consensus 564 ~l~~ 567 (582)
T 3b60_A 564 ELLA 567 (582)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-47 Score=385.65 Aligned_cols=215 Identities=28% Similarity=0.512 Sum_probs=179.8
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..++++||+++|. .+++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 6 ~~~~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~ 77 (247)
T 2ff7_A 6 HDITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALAD 77 (247)
T ss_dssp EEEEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSC
T ss_pred CceeEEEEEEEeC------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCC
Confidence 3699999999972 124579999999999999999999999999999999999653 468999999999753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccc-------ccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD-------TMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------t~vg~~~~~~L 296 (640)
.+++.||||+|++.+|+ .||+||+.++.. ... .+++.++++.+++.+..+ +.++ ..+..|
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~-~~~~~L 146 (247)
T 2ff7_A 78 PNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVG-EQGAGL 146 (247)
T ss_dssp HHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCS-TTTTCC
T ss_pred HHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhh-CCCCCC
Confidence 35678999999999987 599999987521 112 234556677777755433 3332 345789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++.. + ..||+|++|++|++++
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i~~ 223 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKIVE 223 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999995 59999999999763 4 5699999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++++.
T Consensus 224 ~g~~~~l~ 231 (247)
T 2ff7_A 224 QGKHKELL 231 (247)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999875
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-47 Score=393.48 Aligned_cols=223 Identities=30% Similarity=0.469 Sum_probs=180.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|.. .+++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 15 ~~l~~~~l~~~y~~-----~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPN-----HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCTT-----CTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeCC-----CCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCC
Confidence 36999999998821 012679999999999999999999999999999999999653 468999999998742
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHc--CCCccccccccCccCCcCCHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~t~vg~~~~~~LSGGq 300 (640)
.++++|+||+|++.+|+ .||+|||.++...... ...........+.++++.+ ||.+..+. .+.+|||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~-----~~~~LSgGq 161 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGE-----TGNQLSGGQ 161 (271)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCG-----GGTTSCHHH
T ss_pred HHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcC-----CcCCCCHHH
Confidence 34677999999999997 5999999986421100 0000111223456777777 56544443 457899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++||++.. + ..||+|++|++|++++.|+
T Consensus 162 ~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 162 RQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999864 48999999999753 4 4599999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 240 ~~~l~~ 245 (271)
T 2ixe_A 240 HLQLME 245 (271)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=486.16 Aligned_cols=353 Identities=23% Similarity=0.311 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhhhH
Q 006571 12 RTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGAAL 91 (640)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 91 (640)
.+.++..+.....+.|++...+|||+|+.+....+++.+.+........+.....+...........-+.+..++.|..+
T Consensus 925 ~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 1004 (1321)
T 4f4c_A 925 VKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLAL 1004 (1321)
T ss_dssp TTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34456677788888899999999999999998888888877654443222111111110111111111122223345554
Q ss_pred hhhhhhhhhhh------hccccCCCCcccc------------ccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEEE
Q 006571 92 SRASSASLGLS------FSFTGFTMPPDEI------------ADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKFT 153 (640)
Q Consensus 92 ~~~~~~~~g~~------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 153 (640)
+..+..+.+.. ..+.....+...+ +..+.+...+..++.+... .....+.....|+|+
T Consensus 1005 v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~----~~~~~~~~~g~I~f~ 1080 (1321)
T 4f4c_A 1005 IITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLS----LAGEKKKLYGKVIFK 1080 (1321)
T ss_dssp TSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTC----CCSBCCCCCCCEEEE
T ss_pred HhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCcc----CCCCCCCCCCeEEEE
Confidence 44333222211 0111111111111 1111111111111111110 000111223469999
Q ss_pred eEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccC
Q 006571 154 DVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKS 229 (640)
Q Consensus 154 ~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~ 229 (640)
||+|+|+ .+++.+||+||||+|+|||.+||+||||||||||+++|.| +++| .+|+|.+||.|+++ .+|+
T Consensus 1081 nVsf~Y~-----~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~r-l~~p-~~G~I~iDG~di~~i~~~~lR~ 1153 (1321)
T 4f4c_A 1081 NVRFAYP-----ERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLER-FYDT-LGGEIFIDGSEIKTLNPEHTRS 1153 (1321)
T ss_dssp EEEECCT-----TSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTT-SSCC-SSSEEEETTEETTTBCHHHHHT
T ss_pred EEEEeCC-----CCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhc-CccC-CCCEEEECCEEhhhCCHHHHHh
Confidence 9999983 2345689999999999999999999999999999999996 5654 58999999999863 6899
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
+|+||||||.+|+. ||+|||.|+.. |...++++..+. +++.++ .|+++.||.+|+.. ..||||||||+
T Consensus 1154 ~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~ei~~Al~~a~l~~~I~--~Lp~GldT~vge~G-~~LSgGQrQri 1226 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIA--ELPEGFETRVGDRG-TQLSGGQKQRI 1226 (1321)
T ss_dssp TEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHHHHHHHHHHTTCHHHHH--TSTTTTCSEETTTS-CSSCHHHHHHH
T ss_pred heEEECCCCEeeCc-cHHHHHhccCC---CCCCCHHHHHHHHHHhCChHHHH--cCcCCCCCEecCCC-cccCHHHHHHH
Confidence 99999999999975 99999998742 223444332222 223332 46888999998654 56999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
+|||||+++|+|||||||||+||++++..|.+.|+++. +|+|+|+|+|++++ ...||+|+||++|+|+++|+|+|++
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~G~IvE~Gth~eLl 1303 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSNGTIIEKGTHTQLM 1303 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESSSSEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998865 48999999999986 4779999999999999999999998
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
+
T Consensus 1304 ~ 1304 (1321)
T 4f4c_A 1304 S 1304 (1321)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-46 Score=381.88 Aligned_cols=210 Identities=28% Similarity=0.417 Sum_probs=180.9
Q ss_pred eEEEEeEEEEEeeccccccc-cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 149 YLKFTDVTYKVILKGMTSSE-EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~-~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
+|+++||+++| + ++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|. .
T Consensus 4 ~l~i~~l~~~y--------~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~---------~ 64 (253)
T 2nq2_C 4 ALSVENLGFYY--------QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE---------V 64 (253)
T ss_dssp EEEEEEEEEEE--------TTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE---------E
T ss_pred eEEEeeEEEEe--------CCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE---------E
Confidence 59999999998 3 4679999999999999999999999999999999999653 5689998 3
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
++.||||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..+.. +.+|||||||||+|
T Consensus 65 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv~l 139 (253)
T 2nq2_C 65 YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILI 139 (253)
T ss_dssp CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSB-----GGGSCHHHHHHHHH
T ss_pred eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCC-----hhhCCHHHHHHHHH
Confidence 56799999999999899999999987532110 0011233456788999999998776654 56899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||++. .+.++||++++|++|+ ++.|+++++.
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 140 ARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999999876 999999999965 4668899999999999 9999988863
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=383.59 Aligned_cols=215 Identities=30% Similarity=0.487 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+++||+++|. +++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++..
T Consensus 2 l~~~~l~~~y~-------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~ 72 (243)
T 1mv5_A 2 LSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLE 72 (243)
T ss_dssp EEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCS
T ss_pred EEEEEEEEEeC-------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHH
Confidence 78999999871 24579999999999999999999999999999999999653 468999999998742
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccc------cCccCCcCCHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMI------GGSFVRGVSGG 299 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~v------g~~~~~~LSGG 299 (640)
.++++|+||+|++.+|+ .||+||+.++.. + ... .+++.++++.+++.+..+... -+..+..||||
T Consensus 73 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG 143 (243)
T 1mv5_A 73 NWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGG 143 (243)
T ss_dssp CCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHH
T ss_pred HHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHH
Confidence 35678999999999997 599999987521 1 112 234677888888876554321 12346789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
|||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||++. .+ ..||+|++|++|++++.|+
T Consensus 144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999997 5999999999975 34 5699999999999999999
Q ss_pred hHHHHH
Q 006571 380 ASEAMA 385 (640)
Q Consensus 380 ~~~~~~ 385 (640)
++++..
T Consensus 221 ~~~~~~ 226 (243)
T 1mv5_A 221 HNELVA 226 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998754
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-46 Score=379.03 Aligned_cols=207 Identities=27% Similarity=0.411 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|.+. +. |+|.++|+++..
T Consensus 4 ~l~~~~l~~~------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~ 68 (249)
T 2qi9_C 4 VMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSA 68 (249)
T ss_dssp EEEEEEEEET------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCH
T ss_pred EEEEEceEEE------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCH
Confidence 5899999862 59999999999999999999999999999999999653 56 999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
.++++++||+|++.+++.+||+||+.++.. +. .. +++++++++.+||.+..+.. +..|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~-----~~~LSgGq~qrv 135 (249)
T 2qi9_C 69 TKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRS-----TNQLSGGEWQRV 135 (249)
T ss_dssp HHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHH
T ss_pred HHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCC-----hhhCCHHHHHHH
Confidence 346779999999999999999999997521 11 11 45678899999998776653 568999999999
Q ss_pred HHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 305 CIGNEIIINPS-------LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 305 ~IA~aL~~~P~-------iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+|||||+.+|+ +|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..+||++++|++|++++.
T Consensus 136 ~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~ 214 (249)
T 2qi9_C 136 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLAS 214 (249)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEe
Confidence 99999999999 99999999999999999999999999877999999999965 46688999999999999999
Q ss_pred cChHHHH
Q 006571 378 GKASEAM 384 (640)
Q Consensus 378 G~~~~~~ 384 (640)
|+++++.
T Consensus 215 g~~~~~~ 221 (249)
T 2qi9_C 215 GRREEVL 221 (249)
T ss_dssp EEHHHHS
T ss_pred CCHHHHh
Confidence 9998863
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-45 Score=378.67 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=178.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|.. ...+++|+||||+|++||+++|+||||||||||+|+|+|.+. + +|+|.++|+++..
T Consensus 17 ~l~i~~l~~~y~~-----~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~ 88 (260)
T 2ghi_A 17 NIEFSDVNFSYPK-----QTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNR 88 (260)
T ss_dssp CEEEEEEEECCTT-----CCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCH
T ss_pred eEEEEEEEEEeCC-----CCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCH
Confidence 5999999999821 112579999999999999999999999999999999999653 4 7999999998742
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC-------CccccccccCccCCcCC
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL-------ERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~t~vg~~~~~~LS 297 (640)
.+++.|+||+|++.+|+ .||+||+.++.. .... +++.++++.+++ ++..++.++ ..+..||
T Consensus 89 ~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~~LS 157 (260)
T 2ghi_A 89 NSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGMKLS 157 (260)
T ss_dssp HHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSBCCC
T ss_pred HHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcCcCC
Confidence 35678999999999996 599999998521 1122 234455555554 444555554 3467899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||++.. + ..||+|++|++|++++.
T Consensus 158 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i~~~ 234 (260)
T 2ghi_A 158 GGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKIVEK 234 (260)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999864 8999999999764 4 56999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+++++..
T Consensus 235 g~~~~l~~ 242 (260)
T 2ghi_A 235 GTHKDLLK 242 (260)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99998864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-47 Score=464.54 Aligned_cols=356 Identities=23% Similarity=0.298 Sum_probs=255.9
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhch
Q 006571 8 TSLARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSS 87 (640)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (640)
.+..++.++..++..+.++|+++..+|||+|+.+..+.++|.+........+.+.....+.+............+..++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (1284)
T 3g5u_A 233 SSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWY 312 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999988776655544332222222111111112223344567
Q ss_pred hhhHhhhhhhhhhhhhccccCC----CC------------ccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEE
Q 006571 88 GAALSRASSASLGLSFSFTGFT----MP------------PDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLK 151 (640)
Q Consensus 88 g~~~~~~~~~~~g~~~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 151 (640)
|+.++..+..+.|.++++..+. .| .+..+..+.+...+.++..+..... ....+.....|+
T Consensus 313 g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~~~~~~~~g~i~ 389 (1284)
T 3g5u_A 313 GTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKS---GHKPDNIQGNLE 389 (1284)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSS---CCCCTTCCCCEE
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCccccc---CCCCCCCCCeEE
Confidence 8888877777766655422111 01 1111111222222222211110000 001111234699
Q ss_pred EEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hc
Q 006571 152 FTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SL 227 (640)
Q Consensus 152 ~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~ 227 (640)
++||+|+|+. ++++++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.. .+
T Consensus 390 ~~~v~~~y~~-----~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-~~-~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 390 FKNIHFSYPS-----RKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-YD-PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp EEEEEECCSS-----TTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-SC-CSEEEEEETTEEGGGSCHHHH
T ss_pred EEEEEEEcCC-----CCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-CC-CCCeEEEECCEEHHhCCHHHH
Confidence 9999999831 2345799999999999999999999999999999999985 44 468999999999853 56
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
|++||||+|++.+|+. ||+|||.++.. ..+.++..+. +++.++. +++..||.+|.. ..+|||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~~-g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEIEKAVKEANAYDFIMK--LPHQFDTLVGER-GAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHHHHHHHHTTCHHHHHH--STTGGGCCCSSS-SCSSCHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHHh--ccccccccccCC-CCccCHHHHH
Confidence 7889999999999976 99999999742 1223322222 2344443 467789988754 4679999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+++|+|||||||||+||+.++..+.+.++++. +|+|+|+++|+++. + ..||+|++|++|++++.|++++
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i~~~g~~~~ 610 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVIVEQGNHDE 610 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCCCCEECHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999998875 49999999999764 4 5699999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
+++
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-45 Score=369.52 Aligned_cols=202 Identities=22% Similarity=0.384 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| ++ ++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|+++. ..
T Consensus 9 ~~l~~~~ls~~y--------~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~-~~ 76 (214)
T 1sgw_A 9 SKLEIRDLSVGY--------DK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KV 76 (214)
T ss_dssp CEEEEEEEEEES--------SS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GG
T ss_pred ceEEEEEEEEEe--------CC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh-hh
Confidence 479999999997 34 79999999999999999999999999999999999653 56899999999876 46
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.|+||+|++.+++.+||+||+.++...+. .. .+ +++++++++.+||.+. +. .+.+|||||||||+||
T Consensus 77 ~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~---~~-~~-~~~~~~~l~~~gl~~~-~~-----~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 77 KGKIFFLPEEIIVPRKISVEDYLKAVASLYG---VK-VN-KNEIMDALESVEVLDL-KK-----KLGELSQGTIRRVQLA 145 (214)
T ss_dssp GGGEEEECSSCCCCTTSBHHHHHHHHHHHTT---CC-CC-HHHHHHHHHHTTCCCT-TS-----BGGGSCHHHHHHHHHH
T ss_pred cCcEEEEeCCCcCCCCCCHHHHHHHHHHhcC---Cc-hH-HHHHHHHHHHcCCCcC-CC-----ChhhCCHHHHHHHHHH
Confidence 7789999999999999999999998764321 11 11 4567889999999765 54 4578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||++.. +..+||+|+++ .|+|
T Consensus 146 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~-~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 146 STLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELS-YCDVNENLHKY-STKI 210 (214)
T ss_dssp HHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCT-TSSEEEEGGGG-BC--
T ss_pred HHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999998668999999999764 66778887654 5554
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-45 Score=373.57 Aligned_cols=210 Identities=24% Similarity=0.292 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SL 227 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~ 227 (640)
+|+++||+++|.... ..+++|+|+||+|+ ||+++|+||||||||||+|+|+|.+ | .+|+|.++|+++.. ..
T Consensus 1 ml~~~~l~~~y~~~~----~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p-~~G~I~~~g~~~~~~~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG----YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--P-YSGNIFINGMEVRKIRN 72 (263)
T ss_dssp CEEEEEEEEEEEEET----TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--C-CEEEEEETTEEGGGCSC
T ss_pred CEEEEEEEEEeCCCC----ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--C-CCcEEEECCEECcchHH
Confidence 378999999983100 11579999999999 9999999999999999999999954 4 48999999998742 12
Q ss_pred cCcEE-EEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~-yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
+++++ ||+|++.+ .+||+||+.++.... .. ..++++++++.+||. +..+.. +.+|||||||||+
T Consensus 73 ~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGqkqRv~ 138 (263)
T 2pjz_A 73 YIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRK-----LYKLSAGQSVLVR 138 (263)
T ss_dssp CTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSB-----GGGSCHHHHHHHH
T ss_pred hhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHH
Confidence 56899 99999987 789999999876432 11 134678899999998 766654 5689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC-EEEEEcCCeEEEecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD-KLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D-~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||||+.+|++|||||||+|||+.++..+.+.|+++++ |||++||++. .+.++|| ++++|++|++++.|+++++.
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 139 TSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999999999999998743 9999999975 4668899 99999999999999999875
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-44 Score=363.70 Aligned_cols=205 Identities=28% Similarity=0.421 Sum_probs=166.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++|. .+++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|
T Consensus 5 ~~l~~~~l~~~y~------~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWE------EGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG------- 69 (229)
T ss_dssp EEEEEEEEEECSS------TTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS-------
T ss_pred ceEEEEEEEEEeC------CCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC-------
Confidence 3699999999872 124679999999999999999999999999999999999653 5689999998
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCccCCcCCHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGq 300 (640)
+|+||+|++.+++. ||+||+.++.. .... +..+.++.+++.+ ..++.++ ..+..|||||
T Consensus 70 --~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGq 135 (229)
T 2pze_A 70 --RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQ 135 (229)
T ss_dssp --CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCHHH
T ss_pred --EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCHHH
Confidence 49999999999985 99999998531 1111 1223333334332 2333333 3357899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM-LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~-L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++||++. .+ ..||++++|++|++++.|+
T Consensus 136 kqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~~g~ 212 (229)
T 2pze_A 136 RARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGT 212 (229)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999997 45554 4899999999975 34 4699999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++++.
T Consensus 213 ~~~~~ 217 (229)
T 2pze_A 213 FSELQ 217 (229)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=363.94 Aligned_cols=211 Identities=23% Similarity=0.397 Sum_probs=166.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++|. ..++++|+||||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~y~------~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g-------- 66 (237)
T 2cbz_A 3 SITVRNATFTWA------RSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG-------- 66 (237)
T ss_dssp CEEEEEEEEESC------TTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS--------
T ss_pred eEEEEEEEEEeC------CCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC--------
Confidence 489999999982 124679999999999999999999999999999999999653 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+|+||+|++.++ .+||+|||.++... .. ...+......++.+.+++. ...++.++ +.+.+|||||||||+||
T Consensus 67 -~i~~v~Q~~~~~-~~tv~enl~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 67 -SVAYVPQQAWIQ-NDSLRENILFGCQL--EE--PYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CEEEECSSCCCC-SEEHHHHHHTTSCC--CT--THHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHHHHH
T ss_pred -EEEEEcCCCcCC-CcCHHHHhhCcccc--CH--HHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHHHHH
Confidence 399999998765 78999999986321 11 1111111111122333332 22233333 45678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ---DIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~---~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
|||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++||++.. + ..||+|++|++|++++.|+++++.
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQELL 216 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHHHHh
Confidence 99999999999999999999999999999995 443 48999999999864 4 579999999999999999999875
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 217 ~ 217 (237)
T 2cbz_A 217 A 217 (237)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-44 Score=391.95 Aligned_cols=215 Identities=23% Similarity=0.365 Sum_probs=180.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++|. .+++.+|+||||+|++||+++|+||||||||||||+|+|.. + .+|+|.++|+++..
T Consensus 18 ~~i~~~~l~~~y~------~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--~-~~G~I~i~G~~i~~~~ 88 (390)
T 3gd7_A 18 GQMTVKDLTAKYT------EGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL--N-TEGEIQIDGVSWDSIT 88 (390)
T ss_dssp CCEEEEEEEEESS------SSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS--E-EEEEEEESSCBTTSSC
T ss_pred CeEEEEEEEEEec------CCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC--C-CCeEEEECCEECCcCC
Confidence 4699999999982 23567999999999999999999999999999999999954 3 58999999998753
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccC------ccCCcCC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGG------SFVRGVS 297 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~------~~~~~LS 297 (640)
.+++.||||||++.+|+ +||+||+.+.. ... ++++.++++.++|.+..+..... .....||
T Consensus 89 ~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LS 157 (390)
T 3gd7_A 89 LEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLS 157 (390)
T ss_dssp HHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSC
T ss_pred hHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCC
Confidence 35688999999999997 69999996421 111 34577889999987665543321 1123499
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
|||||||+|||||+.+|+||||||||||||+.++..+.+.|+++. .++|+|+++|++. ....||||++|++|+|+..
T Consensus 158 GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 158 HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999864 4899999999964 4567999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+++++..
T Consensus 235 g~~~el~~ 242 (390)
T 3gd7_A 235 DSILELYH 242 (390)
T ss_dssp SSHHHHHH
T ss_pred CCHHHHHh
Confidence 99999864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-44 Score=438.77 Aligned_cols=355 Identities=20% Similarity=0.291 Sum_probs=236.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccccccCCCCccchhhhhhhhhhcCCCcCCCCCccceeeeccccccceecchhchhh
Q 006571 10 LARTKSDQLVETLSAAFKSPVSSETAGASDGGGTLSRKSSRRMLTAASPGRAGASGRNTHIRKSRSAQLKLELDEVSSGA 89 (640)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 89 (640)
..++.++++.+....+.|.....+|||+++.+....+++.+.+........+.+...+.....+.....-..+..++.|+
T Consensus 878 ~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 957 (1284)
T 3g5u_A 878 QALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGA 957 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888999999999999999999888888877665433221110000000000000000000011111222
Q ss_pred hHh-----------------hhhhhhhhhhhccccCCCCccccccCCCCCCCCCccccccccCCCCCCCCCCCCCeeEEE
Q 006571 90 ALS-----------------RASSASLGLSFSFTGFTMPPDEIADSKPFSDDDIPEDIEAGTRERPKFQTEPTLPIYLKF 152 (640)
Q Consensus 90 ~~~-----------------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 152 (640)
.++ ..+....+.+.++.. .+.....+..+.+...+.++..+.... .....+.....|++
T Consensus 958 ~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~~~~~~g~i~~ 1033 (1284)
T 3g5u_A 958 YLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAP-DYAKATVSASHIIRIIEKTPEIDSYST---QGLKPNMLEGNVQF 1033 (1284)
T ss_dssp CCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSC-CSTHHHHHHHHHHHHHHSCCSSSSCCS---SCCCTTTTSCCEEE
T ss_pred HHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCccccccc---ccccccCCCCcEEE
Confidence 222 222233333333332 222222221111111111111100000 00001112346999
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hcc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLK 228 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~ 228 (640)
+||+|+|+. .+++++|+||||+|++||++||+||||||||||+++|+|. ++ +.+|+|.+||+++.+ .+|
T Consensus 1034 ~~v~~~y~~-----~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-~~-p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1034 SGVVFNYPT-----RPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-YD-PMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp EEEEBCCSC-----GGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-SC-CSEEEEESSSSCTTSSCHHHHT
T ss_pred EEEEEECCC-----CCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-cC-CCCCEEEECCEEcccCCHHHHH
Confidence 999999832 2345799999999999999999999999999999999985 43 468999999999863 468
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHH-----HHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA-----IDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
++|+||||++.+|+ .||+|||.++...+ ..+.++..+.. ++.++ .+++..||.+|.. ...||||||||
T Consensus 1107 ~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~---~~~~~~i~~~~~~~~~~~~i~--~l~~gldt~vge~-G~~LSgGq~Qr 1179 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFD-CSIAENIAYGDNSR---VVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDK-GTQLSGGQKQR 1179 (1284)
T ss_dssp TSCEEEESSCCCCS-SBHHHHHTCCCSSC---CCCHHHHHHHHHHHTCHHHHS--STTTGGGCBCSTT-SCSSCHHHHHH
T ss_pred hceEEECCCCcccc-ccHHHHHhccCCCC---CCCHHHHHHHHHHhCcHHHHH--hCccccccccCCC-CCccCHHHHHH
Confidence 89999999999986 59999998764211 22333322222 22232 4677889999854 56799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+|||||+++|+||||||||+|||+.++..|.+.|+++ .+|+|||+++||++. + ..||||++|++|++++.|+|+++
T Consensus 1180 v~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1180 IAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp HHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999885 459999999999875 4 66999999999999999999998
Q ss_pred HH
Q 006571 384 MA 385 (640)
Q Consensus 384 ~~ 385 (640)
++
T Consensus 1257 ~~ 1258 (1284)
T 3g5u_A 1257 LA 1258 (1284)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=353.08 Aligned_cols=200 Identities=29% Similarity=0.456 Sum_probs=152.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+|.+ +++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~----------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g-------- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG----------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG-------- 99 (290)
T ss_dssp ----------C----------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS--------
T ss_pred eEEEEEEEEcC----------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC--------
Confidence 59999999742 469999999999999999999999999999999999653 5689999998
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-------cccccccCccCCcCCHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-------CQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~t~vg~~~~~~LSGGqr 301 (640)
+|+||+|++.+|+. ||+||+. +. .. ... .+.+.++.+++.+ ..++.++ ..+..||||||
T Consensus 100 -~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSgGq~ 165 (290)
T 2bbs_A 100 -RISFCSQNSWIMPG-TIKENII-GV--SY----DEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSGGQR 165 (290)
T ss_dssp -CEEEECSSCCCCSS-BHHHHHH-TT--CC----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHH
T ss_pred -EEEEEeCCCccCcc-cHHHHhh-Cc--cc----chH----HHHHHHHHhChHHHHHhccccccchhc-CccCcCCHHHH
Confidence 49999999999985 9999998 42 11 111 1223344444432 2233333 23578999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML-QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L-~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||++. .+ ..||++++|++|++++.|++
T Consensus 166 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~g~~ 242 (290)
T 2bbs_A 166 ARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFYGTF 242 (290)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999974 5554 4899999999974 34 56999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 243 ~~l~~ 247 (290)
T 2bbs_A 243 SELQN 247 (290)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98753
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-37 Score=349.08 Aligned_cols=205 Identities=22% Similarity=0.303 Sum_probs=174.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|+++.| ++ ..|+++||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.+
T Consensus 356 ~~l~~~~l~~~~--------~~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~--------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDY--------GS-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW--------- 415 (607)
T ss_dssp EEEEECCEEEEC--------SS-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC---------
T ss_pred eEEEEeceEEEe--------cc-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE---------
Confidence 479999999987 22 36899999999999999999999999999999999653 46899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
...+|||+|++.+++.+||.|++....... ....+++.++++.+||.+..+.. +..|||||||||+||
T Consensus 416 ~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 416 DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRN-----VEDLSGGELQRVAIA 483 (607)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSB-----GGGCCHHHHHHHHHH
T ss_pred eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCC-----hhhCCHHHHHHHHHH
Confidence 246999999988777899999987641100 01235678899999998766654 468999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|+|+.+|+||||||||+|||+.++..+++.|+++++ .|+|||+++||+. .+..+||||++|++ |+++..|+++++.
T Consensus 484 raL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 484 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999974 6999999999965 57788999999986 8889999998876
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=345.78 Aligned_cols=205 Identities=23% Similarity=0.310 Sum_probs=173.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|+++.| ++ ..|+++||+|++||++||+||||||||||+|+|+|.+. +.+|+|.+
T Consensus 286 ~~l~~~~l~~~~--------~~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~--------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDY--------GS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW--------- 345 (538)
T ss_dssp EEEEECCEEEEE--------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC---------
T ss_pred eEEEEeeEEEEE--------CC-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE---------
Confidence 469999999987 22 46999999999999999999999999999999999653 56899875
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
...|+||+|++.+++.+||.|++........ ...++++++++.++|.+..++ .+..|||||||||+||
T Consensus 346 ~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGe~qrv~lA 413 (538)
T 1yqt_A 346 DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDR-----EVNELSGGELQRVAIA 413 (538)
T ss_dssp CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTS-----BGGGCCHHHHHHHHHH
T ss_pred CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHH
Confidence 2469999999887778999998875411100 013457788999999766654 4568999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|+|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+..+||||++|++ |+++..|+++++.
T Consensus 414 raL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 414 ATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999974 5999999999965 57789999999986 7899999998876
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=338.87 Aligned_cols=206 Identities=22% Similarity=0.268 Sum_probs=171.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..++++|+++.| ++ ..|+++|++|++||+++|+||||||||||+|+|+|.+. +.+|+|.+++
T Consensus 268 ~~l~~~~l~~~~--------~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~------- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKL--------GD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK------- 329 (538)
T ss_dssp EEEEECCEEEEE--------TT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC-------
T ss_pred ceEEEcceEEEE--------CC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECC-------
Confidence 468999999987 22 46888899999999999999999999999999999653 5689998765
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
..++|++|+......+||.||+.+...... . .....++++++.++|.+..+. .+..|||||||||+||
T Consensus 330 -~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~--~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 330 -QILSYKPQRIFPNYDGTVQQYLENASKDAL----S--TSSWFFEEVTKRLNLHRLLES-----NVNDLSGGELQKLYIA 397 (538)
T ss_dssp -CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----C--TTSHHHHHTTTTTTGGGCTTS-----BGGGCCHHHHHHHHHH
T ss_pred -eeeEeechhcccccCCCHHHHHHHhhhhcc----c--hhHHHHHHHHHHcCCHHHhcC-----ChhhCCHHHHHHHHHH
Confidence 358999999877667899999987422111 0 112346788888999876665 4578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|||+.+|+||||||||+|||+.++..+++.|+++++ .|+|||++|||+. ++..+||||++|++ |.+...+++.++.
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 999999999999999999999999999999999975 5899999999975 57789999999986 6677777765543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=342.54 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=140.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHHcCCCCCC------cccEEEECCE
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL---------------------NLLSGRLMEPT------VGGSITYNDH 221 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl---------------------~~L~G~~~~~~------~~G~I~~~G~ 221 (640)
.+.+|+||||+|++||++||+||||||||||+ +++.|... |. ..|.|.++|.
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCEEEESSC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-CCccceeccccceEecCc
Confidence 45799999999999999999999999999998 77776432 22 1567778887
Q ss_pred eCChhccCcEEEEccCCC-------------------CCCCCCHHHHHHHHHhccCCCCccHHHHH------HHHHHHHH
Q 006571 222 PYSKSLKSKIGFVTQDDV-------------------LFPHLTVKETLTYAALLRLPNTLTKQQKE------KRAIDVIN 276 (640)
Q Consensus 222 ~~~~~~~~~i~yV~Q~~~-------------------l~~~lTV~Enl~~~~~~~~~~~~~~~~~~------~~v~~~l~ 276 (640)
+.....++.+++|+|... .++.+||+||+.+......... ...... ....++++
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHH
Confidence 654434455666655433 2457899999987532211110 000000 11224578
Q ss_pred HcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Q 006571 277 ELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353 (640)
Q Consensus 277 ~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH 353 (640)
.+||.+. .+. .+.+|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||+|||
T Consensus 188 ~~gL~~~~~~~-----~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 188 NVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HTTCTTCCTTC-----BGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HcCCchhhhcC-----CcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 8899754 344 356899999999999999999998 99999999999999999999999999888999999999
Q ss_pred CCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 354 QPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 354 ~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
|+. . ...||+|++| ++|++++.|+++++.
T Consensus 263 d~~-~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 263 DED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp CHH-H-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred CHH-H-HhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 975 3 4569999999 899999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=339.68 Aligned_cols=199 Identities=22% Similarity=0.301 Sum_probs=166.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|...|++++| +++.+|+|+||+|++|++++|+||||||||||+|+|+| |+| +|.+....
T Consensus 434 ~~L~~~~ls~~y--------g~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~~- 494 (986)
T 2iw3_A 434 EDLCNCEFSLAY--------GAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQEE- 494 (986)
T ss_dssp CEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTTT-
T ss_pred ceeEEeeEEEEE--------CCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCccccc-
Confidence 357778999998 45679999999999999999999999999999999995 222 34433222
Q ss_pred cCcEEEEccCC-CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCHHHHHHHH
Q 006571 228 KSKIGFVTQDD-VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 228 ~~~i~yV~Q~~-~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
.+++|++|+. .+++.+||.||+.+ .. . .. ++++.++++.+||. +..+.. +.+||||||||++
T Consensus 495 -~~~~~v~q~~~~~~~~ltv~e~l~~--~~--~-~~-----~~~v~~~L~~lgL~~~~~~~~-----~~~LSGGqkQRva 558 (986)
T 2iw3_A 495 -CRTVYVEHDIDGTHSDTSVLDFVFE--SG--V-GT-----KEAIKDKLIEFGFTDEMIAMP-----ISALSGGWKMKLA 558 (986)
T ss_dssp -SCEEETTCCCCCCCTTSBHHHHHHT--TC--S-SC-----HHHHHHHHHHTTCCHHHHHSB-----GGGCCHHHHHHHH
T ss_pred -eeEEEEcccccccccCCcHHHHHHH--hh--c-CH-----HHHHHHHHHHcCCChhhhcCC-----cccCCHHHHHHHH
Confidence 2478999984 67888999999976 11 1 11 45688899999995 455544 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEE-EecChHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLL-YFGKASEAM 384 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv-~~G~~~~~~ 384 (640)
|||+|+.+|+||||||||+|||+.++..+.+.|++ .|+|||++||++. .+.++||+|++|++|+++ +.|+++++.
T Consensus 559 LArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 559 LARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp HHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999999999987 5899999999964 577899999999999997 789998876
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 635 ~ 635 (986)
T 2iw3_A 635 K 635 (986)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=331.59 Aligned_cols=202 Identities=23% Similarity=0.254 Sum_probs=165.3
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPG-----EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~G-----e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
++++++|+ ..+.+++|+||++.+| |+++|+||||||||||+++|+|.+. +.+|+. + .
T Consensus 350 ~~~~~~y~-------~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~---~ 411 (608)
T 3j16_B 350 ASRAFSYP-------SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I---P 411 (608)
T ss_dssp SSSCCEEC-------CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C---C
T ss_pred cceeEEec-------CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c---c
Confidence 55667762 2245899999999999 7899999999999999999999653 457752 2 1
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+..++|++|+.......||+|++...... ... ....++++++.++|.+..+. .+..|||||||||+||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~~~~----~~~---~~~~~~~~l~~l~l~~~~~~-----~~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKKIRG----QFL---NPQFQTDVVKPLRIDDIIDQ-----EVQHLSGGELQRVAIV 479 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHHCSS----TTT---SHHHHHHTHHHHTSTTTSSS-----BSSSCCHHHHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHHHhhc----ccc---cHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHHH
Confidence 34699999997665567999988643211 111 12356788999999877665 4578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccCEEEEEcC--CeEEEecChHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGK--GSLLYFGKASEAM 384 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D~i~vL~~--G~iv~~G~~~~~~ 384 (640)
|||+.+|+||||||||+|||+.++..+++.|++++ +.|+|||++|||+. ++..+||||++|++ |+++..|+|++++
T Consensus 480 raL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 480 LALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp HHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred HHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 99999999999999999999999999999999986 45999999999965 57789999999996 8999999999887
Q ss_pred H
Q 006571 385 A 385 (640)
Q Consensus 385 ~ 385 (640)
.
T Consensus 559 ~ 559 (608)
T 3j16_B 559 T 559 (608)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=330.83 Aligned_cols=194 Identities=25% Similarity=0.354 Sum_probs=155.9
Q ss_pred EEE-EeEEEEEeeccccccccc-cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE---------EE
Q 006571 150 LKF-TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TY 218 (640)
Q Consensus 150 l~~-~~vs~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I---------~~ 218 (640)
.++ +||+++| +++ .+|+||| +|++||+++|+||||||||||+|+|+|.+. +.+|++ .+
T Consensus 21 ~~~~~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~--p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRY--------GVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI--PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEE--------CCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCccCcchhhhHHhh
Confidence 455 5899988 233 5899999 999999999999999999999999999653 457875 45
Q ss_pred CCEeCCh------hccCcEEEEccCCCCCCC---CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcccccccc
Q 006571 219 NDHPYSK------SLKSKIGFVTQDDVLFPH---LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289 (640)
Q Consensus 219 ~G~~~~~------~~~~~i~yV~Q~~~l~~~---lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg 289 (640)
+|.++.. ..+..+++++|+..+++. .|+.|++.... ..++++++++.+||.+..+..
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~~~~~-- 155 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENVLERE-- 155 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTTTTSB--
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChhhhCC--
Confidence 6765421 112458999997544332 38999886421 113477899999998766654
Q ss_pred CccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
+.+|||||||||+||+||+.+|+||||||||++||+.++..+++.|++++++|+|||+++|++. .+..+||+|++|
T Consensus 156 ---~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl 231 (538)
T 1yqt_A 156 ---IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVV 231 (538)
T ss_dssp ---GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 5689999999999999999999999999999999999999999999999888999999999965 577889999999
Q ss_pred cCC
Q 006571 370 GKG 372 (640)
Q Consensus 370 ~~G 372 (640)
++|
T Consensus 232 ~~~ 234 (538)
T 1yqt_A 232 YGE 234 (538)
T ss_dssp EEE
T ss_pred cCc
Confidence 865
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=334.97 Aligned_cols=191 Identities=26% Similarity=0.373 Sum_probs=156.0
Q ss_pred EeEEEEEeeccccccccc-cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE---------EECCEe
Q 006571 153 TDVTYKVILKGMTSSEEK-DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---------TYNDHP 222 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~-~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I---------~~~G~~ 222 (640)
+||+++| +++ .+|+|+| +|++||+++|+||||||||||+|+|+|.+. +.+|++ .++|.+
T Consensus 95 ~~ls~~y--------g~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~--p~~G~~~~~~~~~~~~~~G~~ 163 (607)
T 3bk7_A 95 EDCVHRY--------GVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI--PNLCEDNDSWDNVIRAFRGNE 163 (607)
T ss_dssp GSEEEEC--------STTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC--CCTTTTCCCHHHHHHHTTTST
T ss_pred CCeEEEE--------CCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC--CCCCccccccchhhheeCCEe
Confidence 7888887 233 5899999 999999999999999999999999999654 457885 456765
Q ss_pred CCh------hccCcEEEEccCCCCCC---CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 223 YSK------SLKSKIGFVTQDDVLFP---HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 223 ~~~------~~~~~i~yV~Q~~~l~~---~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+.. ..+..+++++|....++ ..||.||+... . ..++++++++.+||.+..+.. +
T Consensus 164 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~------~------~~~~~~~~L~~lgL~~~~~~~-----~ 226 (607)
T 3bk7_A 164 LQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV------D------EVGKFEEVVKELELENVLDRE-----L 226 (607)
T ss_dssp HHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT------C------CSSCHHHHHHHTTCTTGGGSB-----G
T ss_pred hhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh------H------HHHHHHHHHHHcCCCchhCCC-----h
Confidence 432 11345889998743322 23999998641 0 013467899999998877654 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++++++|+|||+++||+. .+..+||+|++|+++
T Consensus 227 ~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 227 HQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGE 304 (607)
T ss_dssp GGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESC
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCC
Confidence 689999999999999999999999999999999999999999999999878999999999965 567889999999865
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=339.29 Aligned_cols=208 Identities=22% Similarity=0.382 Sum_probs=161.7
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+|+|+ ..++++|+|+||+|++||+++|+||||||||||+|+|+|.+. +.+|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~------g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~------ 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYP------GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN------ 735 (986)
T ss_dssp EEEEEEEEEECCT------TCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT------
T ss_pred ceEEEEeeEEEeC------CCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEcCc------
Confidence 4699999999872 123679999999999999999999999999999999999653 56899999863
Q ss_pred cCcEEEEccCCCC----CCCCCHHHHHHHHHhcc------------C-CC------------------------------
Q 006571 228 KSKIGFVTQDDVL----FPHLTVKETLTYAALLR------------L-PN------------------------------ 260 (640)
Q Consensus 228 ~~~i~yV~Q~~~l----~~~lTV~Enl~~~~~~~------------~-~~------------------------------ 260 (640)
.+|+|++|++.. ....|++|++.+..... . +.
T Consensus 736 -~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~ 814 (986)
T 2iw3_A 736 -CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNT 814 (986)
T ss_dssp -CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTE
T ss_pred -cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhccc
Confidence 258999997531 12468888887632100 0 00
Q ss_pred ---------------------C--------ccH--------------------------HHHHHHHHHHHHHcCCCcc--
Q 006571 261 ---------------------T--------LTK--------------------------QQKEKRAIDVINELGLERC-- 283 (640)
Q Consensus 261 ---------------------~--------~~~--------------------------~~~~~~v~~~l~~lgL~~~-- 283 (640)
. ... ....++++++++.+||.+.
T Consensus 815 ~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~ 894 (986)
T 2iw3_A 815 YEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIV 894 (986)
T ss_dssp EEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHH
T ss_pred chhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhh
Confidence 0 000 0013467889999999742
Q ss_pred ccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 284 QDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 284 ~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
.+. .+.+|||||||||+|||+|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++||++. .+..+|
T Consensus 895 ~~~-----~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~ 965 (986)
T 2iw3_A 895 SHS-----RIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLT 965 (986)
T ss_dssp HHS-----CGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTC
T ss_pred cCC-----CccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHHHhC
Confidence 343 34689999999999999999999999999999999999999999888754 679999999964 466789
Q ss_pred CEEEEEcCCeEEEecC
Q 006571 364 DKLILLGKGSLLYFGK 379 (640)
Q Consensus 364 D~i~vL~~G~iv~~G~ 379 (640)
|+|++|++|+++..|+
T Consensus 966 DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 966 EEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CEEECCBTTBCCC---
T ss_pred CEEEEEECCEEEEeCC
Confidence 9999999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=325.23 Aligned_cols=199 Identities=27% Similarity=0.444 Sum_probs=150.2
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc-----CC---------------CCCCcccEEEECCEeCChhc-
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG-----RL---------------MEPTVGGSITYNDHPYSKSL- 227 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G-----~~---------------~~~~~~G~I~~~G~~~~~~~- 227 (640)
.+.+|+||||+|++||++||+||||||||||+++|.+ .+ .. ...|.|.++|.++....
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~ 412 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPR 412 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTT
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCC
Confidence 3468999999999999999999999999999987641 00 00 12467888887763100
Q ss_pred --------------------------------------------cCcEEEEccCCCCCC---------------------
Q 006571 228 --------------------------------------------KSKIGFVTQDDVLFP--------------------- 242 (640)
Q Consensus 228 --------------------------------------------~~~i~yV~Q~~~l~~--------------------- 242 (640)
....|+++|+..++|
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (670)
T 3ux8_A 413 SNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEV 492 (670)
T ss_dssp CCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTC
T ss_pred cchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhe
Confidence 011244444433332
Q ss_pred -----------CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHH
Q 006571 243 -----------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEI 310 (640)
Q Consensus 243 -----------~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL 310 (640)
.+||.||+.+... . . ..+++.+.++.++|... .+ ..+.+|||||||||+|||||
T Consensus 493 ~~~~~~~~~~~~ltv~e~l~~~~~------~-~--~~~~~~~~l~~~~l~~~~~~-----~~~~~LSgG~~qrv~iAraL 558 (670)
T 3ux8_A 493 TYKGKNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLG-----QPATTLSGGEAQRVKLAAEL 558 (670)
T ss_dssp CBTTBCHHHHHTSBHHHHHHHTTT------C-H--HHHHHHHHHHHTTCTTSBTT-----CCGGGCCHHHHHHHHHHHHH
T ss_pred eecCCCHHHHhhCCHHHHHHHHHH------h-h--hHHHHHHHHHHcCCchhhcc-----CCchhCCHHHHHHHHHHHHH
Confidence 4799999987532 1 1 22345677888998642 23 34578999999999999999
Q ss_pred hhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChH
Q 006571 311 IINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKAS 381 (640)
Q Consensus 311 ~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~ 381 (640)
+.+| +||||||||+|||+.++..+++.|++++++|+|||+|+|++. . ...||+|++| ++|+|++.|+++
T Consensus 559 ~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~~~g~~~G~i~~~g~~~ 636 (670)
T 3ux8_A 559 HRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYIIDLGPEGGDRGGQIVAVGTPE 636 (670)
T ss_dssp HSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEEEEESSSGGGCCEEEEEECHH
T ss_pred hhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-H-HHhCCEEEEecCCcCCCCCEEEEecCHH
Confidence 9987 599999999999999999999999999888999999999975 3 4679999999 899999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 637 ~~~ 639 (670)
T 3ux8_A 637 EVA 639 (670)
T ss_dssp HHH
T ss_pred HHH
Confidence 984
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=305.81 Aligned_cols=200 Identities=27% Similarity=0.479 Sum_probs=154.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHHcCCCCC----Ccc------cEEEECCEeCChh----
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLL---------NLLSGRLMEP----TVG------GSITYNDHPYSKS---- 226 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl---------~~L~G~~~~~----~~~------G~I~~~G~~~~~~---- 226 (640)
...|+|||++|++|++++|+||||||||||+ +++.+....+ ... +.|.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 4579999999999999999999999999997 4554422110 011 3455655554210
Q ss_pred -----------------------------------------ccCcEEEEccCCCCCCC----------------------
Q 006571 227 -----------------------------------------LKSKIGFVTQDDVLFPH---------------------- 243 (640)
Q Consensus 227 -----------------------------------------~~~~i~yV~Q~~~l~~~---------------------- 243 (640)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888766653
Q ss_pred ----------CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC
Q 006571 244 ----------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN 313 (640)
Q Consensus 244 ----------lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~ 313 (640)
+||.|++.|... . ....++.++|+.+||.... + +..+.+|||||||||+|||||+++
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~------~---~~~~~~~~~L~~vGL~~~~---l-gq~~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKN------I---PSIKRTLQVLHDVGLGYVK---L-GQPATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTT------C---HHHHHHHHHHHHTTGGGSB---T-TCCSTTCCHHHHHHHHHHHHHTSC
T ss_pred ccCCHHHHhhCCHHHHHHHHhc------c---hhHHHHHHHHHHcCCchhh---c-cCCccCCCHHHHHHHHHHHHHhhC
Confidence 678888887531 1 1234567889999996421 1 234578999999999999999987
Q ss_pred C---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 314 P---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 314 P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
| +||||||||+|||+.+...+++.|++++++|.|||+|+|++. +...||+|++| ++|+|++.|+++++.
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 6 799999999999999999999999999988999999999974 34679999999 899999999999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-32 Score=306.92 Aligned_cols=188 Identities=26% Similarity=0.315 Sum_probs=143.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-----------EECCEeCCh----hccCcE--E
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSK----SLKSKI--G 232 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-----------~~~G~~~~~----~~~~~i--~ 232 (640)
...|++++ .+++||++||+||||||||||||+|+|.+. +.+|+| .+.|.++.. .....+ .
T Consensus 91 ~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~--P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 167 (608)
T 3j16_B 91 SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK--PNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAI 167 (608)
T ss_dssp SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC--CCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCE
T ss_pred ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC--CCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhh
Confidence 34677777 689999999999999999999999999654 457987 334433211 111222 3
Q ss_pred EEccCCCC------CCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 233 FVTQDDVL------FPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 233 yV~Q~~~l------~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
+.+|.... -+..++.+++.... . ...++++++++.+||.+..++. +..|||||||||+|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGe~Qrv~i 232 (608)
T 3j16_B 168 IKPQYVDNIPRAIKGPVQKVGELLKLRM------E----KSPEDVKRYIKILQLENVLKRD-----IEKLSGGELQRFAI 232 (608)
T ss_dssp EECCCTTTHHHHCSSSSSHHHHHHHHHC------C----SCHHHHHHHHHHHTCTGGGGSC-----TTTCCHHHHHHHHH
T ss_pred hchhhhhhhhhhhcchhhHHHHHHhhhh------h----hHHHHHHHHHHHcCCcchhCCC-----hHHCCHHHHHHHHH
Confidence 34443211 11235666654321 0 1134678899999998877754 46899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||+.+|++|||||||++||+.++..+.+.|++++++|+|||+++|++. ++..+||+|++|++|..++
T Consensus 233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999999888999999999965 5778999999999876544
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-32 Score=305.15 Aligned_cols=173 Identities=21% Similarity=0.283 Sum_probs=137.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-----------EECCEeCChh----c--cCcEEEEccC----C
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-----------TYNDHPYSKS----L--KSKIGFVTQD----D 238 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-----------~~~G~~~~~~----~--~~~i~yV~Q~----~ 238 (640)
+++||++||+||||||||||+|+|+|.+. +.+|+| .++|.++... . ...+..+.|. +
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~--p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII--PNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC--CCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 45999999999999999999999999654 457988 6777765321 1 1224444443 3
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
.++. .||+|++.... ..++++++++.+|+.+..++. +..|||||||||+|||||+.+|+|||
T Consensus 100 ~~~~-~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~~~~~-----~~~LSgGe~Qrv~iA~aL~~~p~ill 161 (538)
T 3ozx_A 100 KFLK-GTVNEILTKID------------ERGKKDEVKELLNMTNLWNKD-----ANILSGGGLQRLLVAASLLREADVYI 161 (538)
T ss_dssp TTCC-SBHHHHHHHHC------------CSSCHHHHHHHTTCGGGTTSB-----GGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred hhcc-CcHHHHhhcch------------hHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3443 48888765321 122467889999998777654 46899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
|||||++||+.++..+.+.|+++.+ |+|||+++|++. .+..+||+|++|++|..
T Consensus 162 lDEPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~ 215 (538)
T 3ozx_A 162 FDQPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESS 215 (538)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETT
T ss_pred EECCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCcc
Confidence 9999999999999999999999976 999999999975 57889999999987643
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.1e-31 Score=307.93 Aligned_cols=208 Identities=27% Similarity=0.437 Sum_probs=159.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-c----CCC----CCC----ccc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-G----RLM----EPT----VGG 214 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G----~~~----~~~----~~G 214 (640)
..|+++|++. ..|+|||++|++||++||+|+||||||||+++|. | .+. .+. ..|
T Consensus 628 ~~L~v~~l~~-------------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G 694 (972)
T 2r6f_A 628 RWLEVVGARE-------------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRG 694 (972)
T ss_dssp CEEEEEEECS-------------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEEC
T ss_pred eEEEEecCcc-------------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeecc
Confidence 3588887741 3699999999999999999999999999999853 2 111 110 123
Q ss_pred ------EEEECCEeCChhc-----------------------cCcEEEEccCCCCC----------------------C-
Q 006571 215 ------SITYNDHPYSKSL-----------------------KSKIGFVTQDDVLF----------------------P- 242 (640)
Q Consensus 215 ------~I~~~G~~~~~~~-----------------------~~~i~yV~Q~~~l~----------------------~- 242 (640)
.|.++|.++.... .+.+||++|...+. +
T Consensus 695 ~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~ 774 (972)
T 2r6f_A 695 LEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPD 774 (972)
T ss_dssp GGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCC
T ss_pred ccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccc
Confidence 5888988763110 12357777753321 1
Q ss_pred -------------------------------CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccC
Q 006571 243 -------------------------------HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGG 290 (640)
Q Consensus 243 -------------------------------~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~ 290 (640)
.+||.|++.|... .. ...++.++++.+||.. ..+.
T Consensus 775 v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~------~~---~~~~~~~~L~~~gL~~~~l~~---- 841 (972)
T 2r6f_A 775 VYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS------IP---KIKRKLETLYDVGLGYMKLGQ---- 841 (972)
T ss_dssp EEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS------CH---HHHHHHHHHHHTTCSSSBTTC----
T ss_pred ccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc------ch---hHHHHHHHHHHcCCCcccccC----
Confidence 3578888876421 11 1234568899999975 3443
Q ss_pred ccCCcCCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEE
Q 006571 291 SFVRGVSGGERKRVCIGNEIIINP---SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~~~P---~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~ 367 (640)
.+..|||||||||+||++|+.+| +||||||||+|||+.+...+++.|++++++|.|||+++|++. . ...||+|+
T Consensus 842 -~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~-i~~aDrIi 918 (972)
T 2r6f_A 842 -PATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-V-IKTADYII 918 (972)
T ss_dssp -CGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-H-HTTCSEEE
T ss_pred -chhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-H-HHhCCEEE
Confidence 45789999999999999999875 999999999999999999999999999988999999999965 3 46899999
Q ss_pred EE------cCCeEEEecChHHHH
Q 006571 368 LL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 368 vL------~~G~iv~~G~~~~~~ 384 (640)
+| ++|++++.|+++++.
T Consensus 919 vL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 919 DLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp EECSSSTTSCCSEEEEESHHHHH
T ss_pred EEcCCCCCCCCEEEEecCHHHHH
Confidence 99 789999999999875
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=303.23 Aligned_cols=208 Identities=27% Similarity=0.426 Sum_probs=156.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHH-HHcCCC------CC----------
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNL-LSGRLM------EP---------- 210 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~-L~G~~~------~~---------- 210 (640)
..|+++|+++ .+|+|||++|++||++||+|+||||||||+++ |+|.+. .+
T Consensus 501 ~~L~v~~l~~-------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~ 567 (842)
T 2vf7_A 501 GWLELNGVTR-------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPA 567 (842)
T ss_dssp CEEEEEEEEE-------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-------------
T ss_pred ceEEEEeeee-------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccc
Confidence 3689999864 26999999999999999999999999999996 664321 01
Q ss_pred -------Cccc-------EEEECCEeCChhcc-----------------------CcEEEEcc-----------------
Q 006571 211 -------TVGG-------SITYNDHPYSKSLK-----------------------SKIGFVTQ----------------- 236 (640)
Q Consensus 211 -------~~~G-------~I~~~G~~~~~~~~-----------------------~~i~yV~Q----------------- 236 (640)
+..| .|.++|.++....+ +.+||.++
T Consensus 568 ~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~ 647 (842)
T 2vf7_A 568 DHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGE 647 (842)
T ss_dssp ----CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTC
T ss_pred ccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCC
Confidence 1356 78999987632111 11122221
Q ss_pred -----CCCCCC------------------------C--------CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcC
Q 006571 237 -----DDVLFP------------------------H--------LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELG 279 (640)
Q Consensus 237 -----~~~l~~------------------------~--------lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lg 279 (640)
+..+++ . +|+.|++.|.. .. ...+++.++++.+|
T Consensus 648 G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~~---~~~~~~~~~L~~~g 718 (842)
T 2vf7_A 648 GWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------DE---SAIFRALDTLREVG 718 (842)
T ss_dssp SEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------TS---HHHHHHHHHHHHTT
T ss_pred CccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------cc---hHHHHHHHHHHHcC
Confidence 212222 2 34555544421 11 12346788999999
Q ss_pred CCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 280 LERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIIN---PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 280 L~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~---P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
|... .+ ..+..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++|.|||+++|++
T Consensus 719 L~~~~l~-----~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl 793 (842)
T 2vf7_A 719 LGYLRLG-----QPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793 (842)
T ss_dssp CTTSBTT-----CCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCccccc-----CCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 9753 23 34578999999999999999996 799999999999999999999999999998899999999996
Q ss_pred CcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 356 SSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 356 ~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
. .+ ..||+|++| ++|+|++.|+++++.
T Consensus 794 ~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 794 Q-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp H-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred H-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 5 45 789999999 799999999999874
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-29 Score=270.48 Aligned_cols=203 Identities=15% Similarity=0.220 Sum_probs=147.2
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC------------------------------------CCccc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME------------------------------------PTVGG 214 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~------------------------------------~~~~G 214 (640)
.+|+++++++.+| +++|+|||||||||||++|.+.+.. .+.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 9999999999999999999764421 12368
Q ss_pred EEEECCEeCCh----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccC-----------------------CCCc----
Q 006571 215 SITYNDHPYSK----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRL-----------------------PNTL---- 262 (640)
Q Consensus 215 ~I~~~G~~~~~----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~-----------------------~~~~---- 262 (640)
++.+||++++. .+ +..+++++|++.++.. +..+...|.-.... ....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999999863 23 3348999999877643 66555554321100 0000
Q ss_pred ------------------------c------HHHHHHHHHHHHHHcCCCccc----------------cc---cccC---
Q 006571 263 ------------------------T------KQQKEKRAIDVINELGLERCQ----------------DT---MIGG--- 290 (640)
Q Consensus 263 ------------------------~------~~~~~~~v~~~l~~lgL~~~~----------------~t---~vg~--- 290 (640)
. .....+.+.+.++.+++++.. +. .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 0 000112344555666654310 00 0110
Q ss_pred ---ccCCc-CCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 291 ---SFVRG-VSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 291 ---~~~~~-LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
..++. |||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|+|||+|||++ ++...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~--~~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLA--QIAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcH--HHHhhcC
Confidence 11222 6999999999999999999 9999999999999999999999999997 589999999997 3568899
Q ss_pred EEEEE----cCCeEEEec
Q 006571 365 KLILL----GKGSLLYFG 378 (640)
Q Consensus 365 ~i~vL----~~G~iv~~G 378 (640)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-31 Score=295.50 Aligned_cols=197 Identities=13% Similarity=0.104 Sum_probs=156.0
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-E-EEECCEeCChh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-S-ITYNDHPYSKS 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~-I~~~G~~~~~~ 226 (640)
+++++||+++| .++|+++++|++++|+||||||||||+|+|+|... +.+| + |.+||.
T Consensus 118 mi~~~nl~~~y--------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~----- 176 (460)
T 2npi_A 118 MKYIYNLHFML--------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD----- 176 (460)
T ss_dssp HHHHHHHHHHH--------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC-----
T ss_pred hhhhhhhhehh--------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC-----
Confidence 57888888765 27999999999999999999999999999999653 4689 8 999983
Q ss_pred ccCcEEEEccCCC---CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 227 LKSKIGFVTQDDV---LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 227 ~~~~i~yV~Q~~~---l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.++.++||||+.. +++.+||+||+ |+....... . ..+++.++++.+||.+..+ +.+||||||||
T Consensus 177 ~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qr 243 (460)
T 2npi_A 177 PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE-------NKDLYLECISQ 243 (460)
T ss_dssp TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHH
T ss_pred ccCCeeeeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHH
Confidence 3677999999984 44567999999 654321110 0 1123455677788876554 36899999999
Q ss_pred HHHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc-----HHHhccCE-----E
Q 006571 304 VCIGNE--IIINPSL----LFLDE-PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS-----RLFHKFDK-----L 366 (640)
Q Consensus 304 v~IA~a--L~~~P~i----LlLDE-PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~-----~i~~~~D~-----i 366 (640)
|+|||+ |+.+|++ ||||| ||++||+. ...+.+.+++ .++|+|+++|+... .+.++||+ |
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~v 319 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNI 319 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEE
Confidence 999999 9999999 99999 99999999 5555555543 37899999999761 45578999 9
Q ss_pred EEEc-CCeEEEecChHHHH
Q 006571 367 ILLG-KGSLLYFGKASEAM 384 (640)
Q Consensus 367 ~vL~-~G~iv~~G~~~~~~ 384 (640)
++|+ +|+++ .|+++++.
T Consensus 320 i~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 320 FFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp EEECCCTTCC-CCCHHHHH
T ss_pred EEEeCCCcEE-ECCHHHHh
Confidence 9999 99999 99987663
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=241.24 Aligned_cols=84 Identities=26% Similarity=0.425 Sum_probs=77.0
Q ss_pred ccCCcCCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 291 SFVRGVSGGERKRVCIGNEII------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 291 ~~~~~LSGGqrqRv~IA~aL~------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
..+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++.+.|+|||+++|++. ..+.||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFD 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCC
Confidence 356789999999999999999 699999999999999999999999999999888999999999974 367899
Q ss_pred EEEEEcCCeEEE
Q 006571 365 KLILLGKGSLLY 376 (640)
Q Consensus 365 ~i~vL~~G~iv~ 376 (640)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999874
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-29 Score=246.86 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=101.3
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---hhccCcEEEEccCCCCCCCC
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---KSLKSKIGFVTQDDVLFPHL 244 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~~~~~~i~yV~Q~~~l~~~l 244 (640)
+++.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|.. .++. ...++.+|||+|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~------ 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSR--IILTRPAVEAGEKLGFLPGTL------ 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSE--EEEEECSCCTTCCCCSSCC--------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeee--EEecCCchhhhcceEEecCCH------
Confidence 456799996 89999999999999999999999995 3 45898842 2221 23467899999986
Q ss_pred CHHHHH-HHHHhc--cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeC
Q 006571 245 TVKETL-TYAALL--RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDE 321 (640)
Q Consensus 245 TV~Enl-~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDE 321 (640)
+||+ .+.... ...... ..++++++++. ++ ||||||+|||||+.+|++|||||
T Consensus 76 --~enl~~~~~~~~~~~~~~~----~~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 --NEKIDPYLRPLHDALRDMV----EPEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ------CTTTHHHHHHHTTTS----CTTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred --HHHHHHHHHHHHHHHHHhc----cHHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEEEeC
Confidence 4454 221100 000000 01234445543 22 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 322 PTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 322 PTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
||+| ++..+.+.|+++ ++|+||| +||++.
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888999999988 6689999 999964
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-25 Score=234.43 Aligned_cols=206 Identities=18% Similarity=0.180 Sum_probs=129.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------------------------------------------
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM--------------------------------------------- 208 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~--------------------------------------------- 208 (640)
+++++++.+| +++|+||||||||||+++|...+-
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 4678999999 999999999999999999984320
Q ss_pred ---CCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccC------CCCc----cHHHHHHHH
Q 006571 209 ---EPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL------PNTL----TKQQKEKRA 271 (640)
Q Consensus 209 ---~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~------~~~~----~~~~~~~~v 271 (640)
..+.+|.+.+||.+... .....+++.+|+..+++.-++.+++......+. +... ..+...+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 01124688999988752 233456666665544433345554432211000 0000 000011111
Q ss_pred HHHHHHc----------------CCCccccccc-----cCccCCcCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 006571 272 IDVINEL----------------GLERCQDTMI-----GGSFVRGVSGGERKRVCIGNEII----INPSLLFLDEPTSGL 326 (640)
Q Consensus 272 ~~~l~~l----------------gL~~~~~t~v-----g~~~~~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgL 326 (640)
.+++..+ -++...+..+ .+..+..||||||||++||++|+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1111100 0011111111 12235689999999999999997 588999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE--EEEcCCe-EEEecChHHH
Q 006571 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL--ILLGKGS-LLYFGKASEA 383 (640)
Q Consensus 327 D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i--~vL~~G~-iv~~G~~~~~ 383 (640)
|+..+..+.+.|+++. +|.|||++||++. +.+.||++ ++|.+|+ .+.....++.
T Consensus 255 D~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999985 4889999999953 56889987 8888885 4455555553
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-29 Score=265.30 Aligned_cols=169 Identities=18% Similarity=0.256 Sum_probs=135.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+|.| + +++|+|+|++|++|++++|+||||||||||+++|+|.+ +|+|
T Consensus 101 ~i~~~~vs~~y--------~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I------------ 154 (305)
T 2v9p_A 101 FFNYQNIELIT--------F-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSV------------ 154 (305)
T ss_dssp HHHHTTCCHHH--------H-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEE------------
T ss_pred eEEEEEEEEEc--------C-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceE------------
Confidence 48899999987 2 56999999999999999999999999999999999853 6887
Q ss_pred CcEEEEccCCCCCCCCCHHH-HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKE-TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~E-nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++|++|++.+|+. |++| ||.|.. ..+. .+.+.++.+ |++..+ ...|||||||| |
T Consensus 155 --~~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---A 209 (305)
T 2v9p_A 155 --LSFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---A 209 (305)
T ss_dssp --ECGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---C
T ss_pred --EEEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---H
Confidence 4578899988874 8887 887642 1121 355666664 565555 25799999999 9
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
|||+++|+||| ||+||+.++..+.. .+|++.. .+.||+| +|++|++++.|+++++..+|
T Consensus 210 RAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~~--~~~aD~i-vl~~G~iv~~g~~~el~~~y 268 (305)
T 2v9p_A 210 AVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQT--FRFEQPC-TDESGEQPFNITDADWKSFF 268 (305)
T ss_dssp CCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEEE--EECCCCC-CCC---CCCCCCHHHHHHHH
T ss_pred HHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHHH--HHhCCEE-EEeCCEEEEeCCHHHHHHHH
Confidence 99999999999 99999999888752 2898753 5789999 99999999999999996666
Q ss_pred Hh
Q 006571 388 SS 389 (640)
Q Consensus 388 ~~ 389 (640)
..
T Consensus 269 ~~ 270 (305)
T 2v9p_A 269 VR 270 (305)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-25 Score=215.92 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=100.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCC-CCCCHHHHHHHH
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF-PHLTVKETLTYA 253 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~-~~lTV~Enl~~~ 253 (640)
||||++++||+++|+||||||||||+|++.+ |...+++. .+ .++++|++.-. ..-++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~--------~~~~~~~d----~~---~g~~~~~~~~~~~~~~~~~~~~-- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK--------PTEVISSD----FC---RGLMSDDENDQTVTGAAFDVLH-- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC--------GGGEEEHH----HH---HHHHCSSTTCGGGHHHHHHHHH--
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc--------CCeEEccH----HH---HHHhcCcccchhhHHHHHHHHH--
Confidence 6899999999999999999999999999753 11112111 11 25667764210 0001122111
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----
Q 006571 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST---- 329 (640)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~---- 329 (640)
..... ....|.....+. ....|||||||++|||+++.+|++|+|||||++||+.
T Consensus 64 ---------------~~~~~-~~~~g~~~~~~~------~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R 121 (171)
T 4gp7_A 64 ---------------YIVSK-RLQLGKLTVVDA------TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNR 121 (171)
T ss_dssp ---------------HHHHH-HHHTTCCEEEES------CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTC
T ss_pred ---------------HHHHH-HHhCCCeEEEEC------CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcc
Confidence 11111 122344433332 2346999999999999999999999999999999999
Q ss_pred ------------HHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 330 ------------TALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 330 ------------s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
....+.+.|++++++|.|+|+++|++.
T Consensus 122 ~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 122 TDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 558899999988877999999999964
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-26 Score=252.91 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=135.0
Q ss_pred ccceeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccC
Q 006571 170 KDILNGITGSVNPGE--------------------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge--------------------~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~ 229 (640)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|... +.+|+|.++|.+.. +
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t---~- 109 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT---M- 109 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC-------C-
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc---e-
Confidence 469999999999999 999999999999999999999653 46899999998753 2
Q ss_pred cEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH--HHHHHHHH
Q 006571 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG--ERKRVCIG 307 (640)
Q Consensus 230 ~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG--qrqRv~IA 307 (640)
.+|++|++ .++.+|+.||+.++. + +.+++++++.+++.+.. .. +. |||| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~-----~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FF-----II-ISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EE-----EE-EESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-Ce-----EE-eCCCCccHHHHHHH
Confidence 27899985 577889999876542 1 12367888889887542 22 23 9999 99999999
Q ss_pred HHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----CEEEEEeCCCCc-HHHhccCEE
Q 006571 308 NEIII----------NPSLLFLDEPTSGLDSTTALRIVQMLQDIA-----EAG----KTVVTTIHQPSS-RLFHKFDKL 366 (640)
Q Consensus 308 ~aL~~----------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~-----~~g----~TvI~~tH~~~~-~i~~~~D~i 366 (640)
++|+. +|++++|||||+|||+.++.++++.|+++. +.| .+|++++|+... .+.+++|+|
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 99999 999999999999999999999999999985 322 678899998653 244555554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-24 Score=209.03 Aligned_cols=145 Identities=19% Similarity=0.155 Sum_probs=101.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC---h-hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---K-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~---~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~ 260 (640)
.++|+||||||||||+++|+|.+. |.++|.+.. . ..++++||++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~---~~-- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS---SK-- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE---ET--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH---hh--
Confidence 589999999999999999999542 445554431 1 3457899999976 222332 10 00
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHH
Q 006571 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-----IIINPSLLFLDE--PTSGLDSTTALR 333 (640)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a-----L~~~P~iLlLDE--PTsgLD~~s~~~ 333 (640)
+... +..+ +.++..||||||||++||++ |+.+|++|+||| ||++||+.....
T Consensus 63 ------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 63 ------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 0100 0111 23456899999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCCEEEEEeCC--CCcHHHhccCEEEEEcCCeEEE
Q 006571 334 IVQMLQDIAEAGKTVVTTIHQ--PSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 334 i~~~L~~l~~~g~TvI~~tH~--~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
+.+.+++ .+.|+|+++|+ ....+..++|+ .+|++++
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHHhc---CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9988875 47789999972 23456667887 5677765
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-27 Score=230.64 Aligned_cols=183 Identities=17% Similarity=0.154 Sum_probs=119.0
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
+..++++| .+|++||+++|+||||||||||+|+|+|.+. ...+.+.+.+.+.....++.++|++|++.+|+.+|+.
T Consensus 7 ~~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 7 DTKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp --------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CCCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 34568888 7999999999999999999999999999653 2222222222222222356799999998888888888
Q ss_pred HHHHHHHhccC---CCCccHHHHHHHHHHH------HHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEE
Q 006571 248 ETLTYAALLRL---PNTLTKQQKEKRAIDV------INELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLF 318 (640)
Q Consensus 248 Enl~~~~~~~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLl 318 (640)
+++........ ....+.++.++++++. ++.+|+.+..+. .++.|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----~~~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKT-----MPEAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHH-----CTTSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHh-----cCCcEE-----------EEEECCCHHH
Confidence 87642211000 0123344444555554 444444433332 234566 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 319 LDEPTSGL----DSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 319 LDEPTsgL----D~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
|||||+|+ |+..+.++.+.++++.+ .|.|+|+++|++. ++.++||+|++|.+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC---
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhcc
Confidence 99999998 78899999999999975 4899999999975 58889999999853
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-25 Score=244.85 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=151.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE---eCC
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH---PYS 224 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~---~~~ 224 (640)
..++++|+++.|. .+..+|+++ ++|.+|++++|+||||||||||+++|+|... +..|.|.++|+ ++.
T Consensus 130 ~~l~~~~v~~~~~-------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~ 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLD-------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVK 199 (438)
T ss_dssp CTTTSCCCCSBCC-------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHH
T ss_pred CceEEeccceecC-------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHH
Confidence 3578899988772 145799999 9999999999999999999999999999643 45899999998 443
Q ss_pred h---------hccCcEEEEccC-CCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCC
Q 006571 225 K---------SLKSKIGFVTQD-DVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVR 294 (640)
Q Consensus 225 ~---------~~~~~i~yV~Q~-~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~ 294 (640)
+ .+++.++||+|+ +.+++.+||.+|+.+.+..... ..+++ ....| ...
T Consensus 200 ~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~~v---------~~~ld------~l~ 257 (438)
T 2dpy_A 200 DFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQHV---------LLIMD------SLT 257 (438)
T ss_dssp HHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTCEE---------EEEEE------CHH
T ss_pred HHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCH---------HHHHH------hHH
Confidence 2 256789999995 5667788999999886532100 00000 01111 135
Q ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-CC-----EEEEEeCCCCcHHHhccCE
Q 006571 295 GVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---A-GK-----TVVTTIHQPSSRLFHKFDK 365 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~---~-g~-----TvI~~tH~~~~~i~~~~D~ 365 (640)
.+|+|| |||+|| +.+|++ |+|||+.+...+.+.++++.+ + |+ ||++++||++ ...||+
T Consensus 258 ~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~ 324 (438)
T 2dpy_A 258 RYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADS 324 (438)
T ss_dssp HHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHH
T ss_pred HHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhce
Confidence 699999 999999 889988 999999999999999999866 3 64 9999999987 367999
Q ss_pred EEEEcCCeEEEecChHHH
Q 006571 366 LILLGKGSLLYFGKASEA 383 (640)
Q Consensus 366 i~vL~~G~iv~~G~~~~~ 383 (640)
+++|.+|+++..|++.++
T Consensus 325 v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 325 ARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp HHHHSSEEEEECHHHHHT
T ss_pred EEEEeCcEEEEeCCHHHc
Confidence 999999999999998775
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.5e-24 Score=221.96 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=131.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hc--cCcEEEEccCCC-CC
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LF 241 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yV~Q~~~-l~ 241 (640)
++++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.+ .+ +..++|++|++. ++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 457899999999999999999999999999999654 358999999998742 12 346999999998 88
Q ss_pred CCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEE
Q 006571 242 PHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFL 319 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlL 319 (640)
|.+||+||+.++.... .. ..+++.+|+.+..+.. +.+|| |||++|||+|+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~~~--~d----------~~lldt~gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEG--YD----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHHTT--CS----------EEEECCCCCSSCCHHH-----HHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHHcC--Cc----------chHHhcCCCCcchhHH-----HHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 8899999999864211 00 1245566776655543 45799 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-HCCCEEEEEeCCCC--------cHHHhccCEEEEEcCCeE
Q 006571 320 DEPTSGLDSTTALRIVQMLQDIA-EAGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 320 DEPTsgLD~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (640)
| ||+|||+.++ ++++. +.|.|+|++||... ..+....+.|.++..|+.
T Consensus 228 D-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 228 D-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp E-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred e-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9 9999999865 24454 35899999999422 123344567888888864
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=226.54 Aligned_cols=108 Identities=25% Similarity=0.400 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Q 006571 269 KRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345 (640)
Q Consensus 269 ~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g 345 (640)
++++ .+..+||.+. .+. .+..|||||||||+||++|..+| .+|+|||||++||+.....+++.|++|.+.|
T Consensus 358 ~rl~-~L~~vGL~~l~l~r-----~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G 431 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDR-----STPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGG 431 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTC-----BGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTT
T ss_pred HHHH-HHHhCCCCcCCccC-----CcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcC
Confidence 3444 5778899754 343 45789999999999999999999 5999999999999999999999999998889
Q ss_pred CEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 346 KTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 346 ~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
.|||+|+|++. +...||+|++| ++|++++.|+++++.
T Consensus 432 ~TVIvVeHdl~--~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 432 NSLFVVEHDLD--VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp CEEEEECCCHH--HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred CEEEEEcCCHH--HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 99999999974 45789999999 799999999998764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-23 Score=220.74 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=132.3
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hc--cCcEEEEccCCC-CCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL--KSKIGFVTQDDV-LFP 242 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~--~~~i~yV~Q~~~-l~~ 242 (640)
+++|+++++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.+ .+ +..|+|++|++. ++|
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 46889999999999999999999999999999654 358999999998742 12 356999999998 888
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEe
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLD 320 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLD 320 (640)
.+||+||+.++.... .. ..+++.+|+.+..+.. +.+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~--~d----------~~lldt~Gl~~~~~~~-----~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG--YD----------VVLCDTSGRLHTNYSL-----MEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT--CS----------EEEEECCCCSSCCHHH-----HHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC--CH----------HHHHHhcCCChhhhhH-----HHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 899999999864311 00 1234566776655443 45799 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCC--------cHHHhccCEEEEEcCCeE
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPS--------SRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~--------~~i~~~~D~i~vL~~G~i 374 (640)
||+|||+.++. +++.+ .|.|+|++||... +.+....+.|.++..|+.
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99999998653 34443 5899999999421 123344567888887753
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=205.33 Aligned_cols=86 Identities=15% Similarity=0.146 Sum_probs=77.4
Q ss_pred CccCC-cCCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHH
Q 006571 290 GSFVR-GVSGGERKRVCIGNEII---------INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRL 359 (640)
Q Consensus 290 ~~~~~-~LSGGqrqRv~IA~aL~---------~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i 359 (640)
+..++ .||||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. ..
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~-- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP-- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT--
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc--
Confidence 44566 79999999999999999 8999999999999999999999999998763 799999994 32
Q ss_pred HhccCEEEEEcCCeEEEecChHHH
Q 006571 360 FHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 360 ~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
.+|++++|++|+++..|+++++
T Consensus 333 --~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 --GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp --TCSEEEEEETTEEEECCCTTTS
T ss_pred --cCCEEEEEECCEEEecCCHHHH
Confidence 7999999999999999998875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-23 Score=215.03 Aligned_cols=146 Identities=19% Similarity=0.231 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~ 263 (640)
.++|+||||||||||+|+|+|... +.+|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+...... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-- 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-- 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H--
Confidence 479999999999999999999653 458999999998754 3457799999999999999999999987543211 1
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
..+.+.+.++ .+..+.. ...||||||||++|||+++. +++||||+.|||+.. .+.++.+.+
T Consensus 79 ---~~~~i~~~~~----~~~~~~~-----~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 79 ---CWEPIEKYIN----EQYEKFL-----KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp ---CSHHHHHHHH----HHHHHHH-----HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred ---HHHHHHHHHH----HHHHhhh-----HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1122333332 1222222 35799999999999999876 999999999999987 455566665
Q ss_pred CCCEEEEEeCCC
Q 006571 344 AGKTVVTTIHQP 355 (640)
Q Consensus 344 ~g~TvI~~tH~~ 355 (640)
. .+||+++|..
T Consensus 140 ~-~~vI~Vi~K~ 150 (270)
T 3sop_A 140 V-VNIIPVIAKA 150 (270)
T ss_dssp T-SEEEEEETTG
T ss_pred c-CcEEEEEecc
Confidence 5 8999999874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-22 Score=215.59 Aligned_cols=131 Identities=20% Similarity=0.256 Sum_probs=106.3
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
+++++|+.+++|++++|+||||||||||+++|+|.+. +.+|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 8999999999999999999999999999999998653 468999999865211 1233344332
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+ |||+||++||+||..+|++|+|||||+
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~----- 251 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS----- 251 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-----
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeE
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~i 374 (640)
.++.+.|+.+...+.|+|+++|+++ +.+.|||+++|.+|+.
T Consensus 252 --~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 --SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp --THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred --HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456777777653458999999976 5688999999988853
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-25 Score=222.36 Aligned_cols=172 Identities=16% Similarity=0.149 Sum_probs=111.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----hccCcEEEEccCCCCCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----SLKSKIGFVTQDDVLFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-----~~~~~i~yV~Q~~~l~~~l 244 (640)
..-|+||||+|++|++++|+||||||||||+++|+|.. | |+|.+ |.+... ..++.++|++|++.+|+.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p---G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P---NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS--T---TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C---CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 45799999999999999999999999999999999954 2 88999 776521 2356799999998776543
Q ss_pred C-HHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH-----HHHHhhCCCEE
Q 006571 245 T-VKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI-----GNEIIINPSLL 317 (640)
Q Consensus 245 T-V~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I-----A~aL~~~P~iL 317 (640)
+ +.+++.+.. .... ...+. +.++++++...+ ..+. ..||||||||++| +++|+.+|+++
T Consensus 84 ~~~~~~l~~~~-~~~~~~g~~~----~~i~~~l~~~~~-----~il~----~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEYDN-YANNFYGTLK----SEYDKAKEQNKI-----CLFE----MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEEEE-ETTEEEEEEH----HHHHHHHHTTCE-----EEEE----ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhhhh-cccccCCCcH----HHHHHHHhCCCc-----EEEE----ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 3 111221110 0000 01122 235566654322 1111 4699999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 318 FLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 318 lLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+|||||+++|..+...|.+.|+++.+ ++| ++| + ..||.|+++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~-~~~---~~h-~-----~~~d~iiv~~~ 193 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNI-ELH---EAN-L-----LNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHH-HHH---HHT-T-----SCCSEEEECSS
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHH-HHH---hhc-c-----cCCCEEEECCC
Confidence 99999999999999999999988754 344 456 1 45788777654
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-21 Score=201.27 Aligned_cols=78 Identities=27% Similarity=0.349 Sum_probs=69.9
Q ss_pred ccCCcCCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 291 SFVRGVSGGERK------RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 291 ~~~~~LSGGqrq------Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
..+..||||||| |+++|++|+.+|++|||||||+|||+..+..+++.|+++.+.|+|||++||++ ++...||
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~--~~~~~~d 321 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAAD 321 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGCS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChH--HHHHhCC
Confidence 346789999999 66778888889999999999999999999999999999877789999999994 3678999
Q ss_pred EEEEEc
Q 006571 365 KLILLG 370 (640)
Q Consensus 365 ~i~vL~ 370 (640)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.5e-24 Score=222.13 Aligned_cols=145 Identities=12% Similarity=0.138 Sum_probs=111.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEE-----------------------EeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGS-----------------------VNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~-----------------------i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
..|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+
T Consensus 42 ~~i~~~~v~~~y~----------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~ 111 (312)
T 3aez_A 42 EQIDLLEVEEVYL----------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQ 111 (312)
T ss_dssp CCCCHHHHHHTHH----------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEeeehhhhhh----------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHH
Confidence 3588899988771 355555543 8999999999999999999999999
Q ss_pred cCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccc
Q 006571 205 GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284 (640)
Q Consensus 205 G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 284 (640)
|.+. +..|. ++++||+|++.+++. |++||+.+... ...+.....+.+.++++.++ ....
T Consensus 112 gll~--~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~----~g~~~~~d~~~~~~~L~~l~-~~~~ 170 (312)
T 3aez_A 112 ALLA--RWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR----KGFPESYNRRALMRFVTSVK-SGSD 170 (312)
T ss_dssp HHHH--TSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC----TTSGGGBCHHHHHHHHHHHH-TTCS
T ss_pred hhcc--ccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh----cCCChHHHHHHHHHHHHHhC-CCcc
Confidence 9653 23342 469999999999988 99999865321 11222233456777888876 3333
Q ss_pred cccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 285 DTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 285 ~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
+.. +..|||||+||+++|++++.+|+|||||||+..+|+
T Consensus 171 ~~~-----~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 171 YAC-----APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp CEE-----EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred cCC-----cccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 333 357999999999999999999999999999999987
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-22 Score=202.19 Aligned_cols=181 Identities=10% Similarity=0.091 Sum_probs=112.4
Q ss_pred cccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCH
Q 006571 167 SEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 167 ~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV 246 (640)
.+++++|+||||++++|+++||+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|+
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc------ccCCceEEEeCCc-CccccCH
Confidence 35678999999999999999999999999999999999843 333333 3467899999996 6778999
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 006571 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgL 326 (640)
.|++.+......... +.....+.+.+.++.+ .+..+. .+..+|+||+||+.+ ++++.+|+++|||||...+
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~-----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTV-----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCE-----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCe-----ecccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999987543211000 1111123344555543 233333 246899999999988 5888899999999998888
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHh-ccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFH-KFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 327 D~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~-~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
|.. +.++ .+.+|++++|+.. .+.+ +++++ ++|+ +.+++.+.+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~~-~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSDV-RLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHHH-HHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred cHH--------HHHh--cCeEEEEECCHHH-HHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 864 2222 3789999999733 3333 34444 6675 6777766544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.9e-21 Score=223.44 Aligned_cols=162 Identities=23% Similarity=0.379 Sum_probs=123.2
Q ss_pred HHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC--cc-H--HHHHHHHHHH
Q 006571 200 LNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT--LT-K--QQKEKRAIDV 274 (640)
Q Consensus 200 l~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~--~~-~--~~~~~~v~~~ 274 (640)
..|..+|+. +..|+|.++|+++.+ +..+||.|++.|......+.. .. . ....++..+.
T Consensus 385 ~~C~g~rl~--~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 385 SVCGGRRLN--REALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTTCSCCBC--TTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHH
T ss_pred hhcccccCC--hHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHH
Confidence 344444443 457999999998742 235688888887554332211 00 0 0111234567
Q ss_pred HHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Q 006571 275 INELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTT 351 (640)
Q Consensus 275 l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~ 351 (640)
+..+||... .+. .+.+|||||||||+|||+|+.+|+ +|||||||+|||+.....+++.|+++.++|.|||++
T Consensus 448 L~~vgL~~l~l~r-----~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 448 LVDVGLEYLTLSR-----SATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHTTTCTTCBTTS-----BGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHcCCccccccC-----CcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 788898753 343 456899999999999999999887 999999999999999999999999998889999999
Q ss_pred eCCCCcHHHhccCEEEEE------cCCeEEEecChHHHHH
Q 006571 352 IHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAMA 385 (640)
Q Consensus 352 tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~~ 385 (640)
+||+. ....||+|++| ++|++++.|+++++..
T Consensus 523 tHd~~--~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 523 EHDEE--VIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCCHH--HHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred eCCHH--HHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99964 34669999999 8999999999998763
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-21 Score=201.63 Aligned_cols=184 Identities=15% Similarity=0.121 Sum_probs=121.6
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-EEEECCEeCC-hhccCcEEEEccCCCCCCCCCHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYS-KSLKSKIGFVTQDDVLFPHLTVK 247 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~I~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV~ 247 (640)
.++|+++++.+++|++++|+||||||||||++.|+|... +.+| .|.+.+.+.. ..+++++.++.|+.. +++.
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhc
Confidence 468999999999999999999999999999999999653 2346 6755443333 233334444444321 2233
Q ss_pred HHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH-HHHHHHHHHHhhCCCEEEEeCCCC--
Q 006571 248 ETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE-RKRVCIGNEIIINPSLLFLDEPTS-- 324 (640)
Q Consensus 248 Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq-rqRv~IA~aL~~~P~iLlLDEPTs-- 324 (640)
+++..+. ++.++..+.++++++..++. ..+ .+..+|.+| +||+. |+++..+|++||+||||+
T Consensus 96 ~~l~~~~-------~~~~~~~~~~~~~l~~~~l~-i~~------~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 96 DSLKREI-------IENGKFDQWFDELFGNDTFH-LYD------SFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVV 160 (296)
T ss_dssp HHHHHHH-------HHHTHHHHHHHHHHSSSCEE-EEC------CCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC---
T ss_pred cccccCC-------CCHHHHHHHHHHHhccCCEE-EEC------CCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccC
Confidence 4444321 11222333444444322221 111 124588898 66776 999999999999999999
Q ss_pred -C---CCH-HHHHHHHHHHHHHHHC-CCEEEEEeCCCC-c--------------------HHHhccCEEEEEcCCeE
Q 006571 325 -G---LDS-TTALRIVQMLQDIAEA-GKTVVTTIHQPS-S--------------------RLFHKFDKLILLGKGSL 374 (640)
Q Consensus 325 -g---LD~-~s~~~i~~~L~~l~~~-g~TvI~~tH~~~-~--------------------~i~~~~D~i~vL~~G~i 374 (640)
+ +|. .....+++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 161 ~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 161 SASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 555 6678899999999865 999999999951 2 57788999999999874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-20 Score=207.20 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=71.3
Q ss_pred cCCcC-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 292 FVRGV-SGGERKRVCIGNEIIINP--SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 292 ~~~~L-SGGqrqRv~IA~aL~~~P--~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
.+..| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||++. +...||++++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~ 469 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYK 469 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEE
Confidence 35567 999999999999999999 99999999999999999999999999987 899999999964 4567999999
Q ss_pred EcCC
Q 006571 369 LGKG 372 (640)
Q Consensus 369 L~~G 372 (640)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9665
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-21 Score=206.61 Aligned_cols=191 Identities=15% Similarity=0.173 Sum_probs=138.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.++.+++++.|. .+..+|+++ ++|.+||+++|+||||||||||+++|+|... +..|.|.+.|++..+
T Consensus 45 ~i~~~~l~~~~~-------tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 45 PLLRQVIDQPFI-------LGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNE 114 (347)
T ss_dssp STTCCCCCSEEC-------CSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHH
T ss_pred CeeecccceecC-------CCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHH
Confidence 578889988872 145799999 9999999999999999999999999999653 457999999875211
Q ss_pred --------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCC
Q 006571 226 --------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVS 297 (640)
Q Consensus 226 --------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 297 (640)
.+++.+.+++|.+. +..+.+.-... ...+.+.....+ .+..+--..+..||
T Consensus 115 ~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~----~~vl~~ld~~~~lS 173 (347)
T 2obl_A 115 FLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG----KNVLLMMDSVTRYA 173 (347)
T ss_dssp HHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT----CEEEEEEETHHHHH
T ss_pred HHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc----ccHHHHHhhHHHHH
Confidence 13455788887542 33333321100 000111111111 11111002346799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCC-----EEEEEeCCCCcHHHhccCEEEEEc
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE--AGK-----TVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~--~g~-----TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+|| ||+++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||++. .+||++++|.
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~~---~i~d~v~~i~ 240 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVND---PIGDEVRSIL 240 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCCC---HHHHHHHHHC
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCCC---hhhhheEEee
Confidence 999 899999 688887 999999999999999999864 477 99999999873 6799999999
Q ss_pred CCeEEEecChHHH
Q 006571 371 KGSLLYFGKASEA 383 (640)
Q Consensus 371 ~G~iv~~G~~~~~ 383 (640)
+|+|+..|+.+++
T Consensus 241 dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 241 DGHIVLTRELAEE 253 (347)
T ss_dssp SEEEEBCHHHHTT
T ss_pred CcEEEEeCCHHHc
Confidence 9999999988775
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-20 Score=225.87 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=121.3
Q ss_pred eEEEEe-----EEEEEeeccccccccccceeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE
Q 006571 149 YLKFTD-----VTYKVILKGMTSSEEKDILNGITGSVNP-------GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI 216 (640)
Q Consensus 149 ~l~~~~-----vs~~~~~~~~~~~~~~~iL~~vs~~i~~-------Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I 216 (640)
.|+++| |++.|. +++.|++|+++.+++ |++++|+||||||||||||+| |.+.
T Consensus 750 ~l~i~~~rHP~l~~~~~-------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-------- 813 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF-------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-------- 813 (1022)
T ss_dssp CEEEEEECCCC-------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--------
T ss_pred eEEEEeccccEEEEEec-------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--------
Confidence 599999 888762 345799999999987 999999999999999999999 8542
Q ss_pred EECCEeCChhccCcEE-EEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 217 TYNDHPYSKSLKSKIG-FVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 217 ~~~G~~~~~~~~~~i~-yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+..++| ||||+.. .+||.|+|.. + +|+.+.... ....
T Consensus 814 ----------~~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~-----~~st 851 (1022)
T 2o8b_B 814 ----------VMAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMS-----GEST 851 (1022)
T ss_dssp ----------HHHTTTCCEESSEE---EECCCSBEEE----E--------------------CC--------------CH
T ss_pred ----------HHhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhh-----chhh
Confidence 123455 9999863 4566655421 1 122211111 1245
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA-LRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~-~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
+|+++++ +++|++++.+|+++||||||+|+|+... ..++..|+.++++ |.++|++||++. .+...+|++.++ +|+
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~-~g~ 928 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR-LGH 928 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-EEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-cCe
Confidence 7777765 9999999999999999999999999984 5578899999876 999999999964 455678998887 588
Q ss_pred EE--EecChHH
Q 006571 374 LL--YFGKASE 382 (640)
Q Consensus 374 iv--~~G~~~~ 382 (640)
+. +.|++++
T Consensus 929 ~~~~~~~~~~~ 939 (1022)
T 2o8b_B 929 MACMVENECED 939 (1022)
T ss_dssp EEEC-------
T ss_pred EEEEEecCccc
Confidence 87 5565443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-22 Score=224.16 Aligned_cols=168 Identities=15% Similarity=0.123 Sum_probs=117.6
Q ss_pred cccceeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HHcCCCCCCcccEEEECCEeCCh---hccCcEEEEccCCCCCC
Q 006571 169 EKDILNGITG-SVNPGEVLALMGPSGSGKTTLLNL--LSGRLMEPTVGGSITYNDHPYSK---SLKSKIGFVTQDDVLFP 242 (640)
Q Consensus 169 ~~~iL~~vs~-~i~~Ge~~aIvGpsGsGKSTLl~~--L~G~~~~~~~~G~I~~~G~~~~~---~~~~~i~yV~Q~~~l~~ 242 (640)
..++|++||+ .|++|++++|+||||||||||+++ ++|... +.+|.|+++|++... ..++.+||++|++...+
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~ 101 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEG 101 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTT
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccC
Confidence 4679999999 999999999999999999999999 678542 347999999988532 23467899999854321
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP 322 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP 322 (640)
+ +.+ ..... . +...++++.++|.+..+. .++.|||| +|++++||||
T Consensus 102 ~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~-----~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 102 K------LFI---LDASP--D-----PEGQEVVGGFDLSALIER-----INYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp S------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHH-----HHHHHHHH-------------TCSEEEEECS
T ss_pred c------EEE---EecCc--c-----cchhhhhcccCHHHHHHH-----HHHHHHHc-------------CCCEEEECCH
Confidence 1 110 00000 0 000111112222222221 12345555 5889999999
Q ss_pred CC-----CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH--------HHhccCEEEEEcCC
Q 006571 323 TS-----GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR--------LFHKFDKLILLGKG 372 (640)
Q Consensus 323 Ts-----gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~--------i~~~~D~i~vL~~G 372 (640)
|+ +||+..+..+.++++++++.|+|||+++|++... +..+||+|++|++|
T Consensus 148 t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 148 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 98 4699999999999999988899999999998652 23459999999983
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-19 Score=201.19 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=118.3
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
++.+++|++++|+||||||||||++.++|... + .|+ +.+.|++|++. ..+.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~--~-~G~-------------~vi~~~~ee~~----~~l~~~~~----- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC--A-NKE-------------RAILFAYEESR----AQLLRNAY----- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH--T-TTC-------------CEEEEESSSCH----HHHHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-CCC-------------CEEEEEEeCCH----HHHHHHHH-----
Confidence 45899999999999999999999999998543 2 242 12456677642 13333321
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST-----TA 331 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~-----s~ 331 (640)
+.. .+. ++ +...|+.+..+. .+..|||||+||+.+|+++..+|++|++| ||++||.. .+
T Consensus 330 ~~g--~~~-------~~-~~~~g~~~~~~~-----~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~ 393 (525)
T 1tf7_A 330 SWG--MDF-------EE-MERQNLLKIVCA-----YPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFR 393 (525)
T ss_dssp TTS--CCH-------HH-HHHTTSEEECCC-----CGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHH
T ss_pred HcC--CCH-------HH-HHhCCCEEEEEe-----ccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHH
Confidence 111 121 12 223455444432 35689999999999999999999999999 99999999 99
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCC---------cHHHhccCEEEEEcCCe
Q 006571 332 LRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILLGKGS 373 (640)
Q Consensus 332 ~~i~~~L~~l~~~g~TvI~~tH~~~---------~~i~~~~D~i~vL~~G~ 373 (640)
..+.++++.+++.|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 394 ~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9999999999888999999999971 34567899999999887
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-19 Score=206.10 Aligned_cols=135 Identities=24% Similarity=0.400 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHhccCCCC---cc---HHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 242 PHLTVKETLTYAALLRLPNT---LT---KQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 242 ~~lTV~Enl~~~~~~~~~~~---~~---~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
..+||.|++.|...+.++.. +. .++..+++ +.+..+||... .+. .+.+|||||||||+||++|..+|
T Consensus 450 ~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR-----~~~tLSGGEkQRV~LA~aL~~~~ 523 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSR-----SAGTLSGGEAQRIRLATQIGSRL 523 (972)
T ss_dssp HTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSS-----BGGGCCHHHHHHHHHHHHHTTCC
T ss_pred hhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCC-----ccccCCHHHHHHHHHHHHHhhCC
Confidence 36899999999766543320 00 02334455 45888999753 344 45689999999999999999985
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE------cCCeEEEecChHHHH
Q 006571 315 --SLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL------GKGSLLYFGKASEAM 384 (640)
Q Consensus 315 --~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL------~~G~iv~~G~~~~~~ 384 (640)
++|||||||+|||+.....+++.|++|.+.|.|||+|+|++. . ...||+|++| ++|++++.|+++++.
T Consensus 524 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~-i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 524 TGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-T-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp CSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HHSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-H-HHhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999888999999999974 3 4679999999 799999999998764
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-19 Score=210.34 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=112.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.+.|++|+++++++|++++|+||||||||||||+|++.... ...| +|||++...++.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~-aq~G-----------------~~vpa~~~~~~~----- 704 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM-AQIG-----------------CFVPCESAEVSI----- 704 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH-HHHT-----------------CCBSEEEEEEEC-----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH-HhcC-----------------CccccccccchH-----
Confidence 46799999999999999999999999999999999421100 0011 011111000000
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH--hhCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI--IINPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL--~~~P~iLlLDEPTsgL 326 (640)
+++++..+|+.+. ..+++|+|++++..+|++| +.+|+++||||||+||
T Consensus 705 ----------------------~d~i~~~ig~~d~--------l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~Gl 754 (934)
T 3thx_A 705 ----------------------VDCILARVGAGDS--------QLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGT 754 (934)
T ss_dssp ----------------------CSEEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSS
T ss_pred ----------------------HHHHHHhcCchhh--------HHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Confidence 0000111222211 1246888888888888888 9999999999999999
Q ss_pred CHHHHHHH-HHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHH
Q 006571 327 DSTTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383 (640)
Q Consensus 327 D~~s~~~i-~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~ 383 (640)
|+.....+ ...++.+.+ .|.|+|++||+. ++..+||++..+.+|++...++.+++
T Consensus 755 D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 755 STYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEeeEEEEEecCCcE
Confidence 99998888 677777876 499999999994 36689999999999999998887664
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.6e-20 Score=188.16 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=99.3
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-ccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~-~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
++|+++| +++|++++|+||||||||||+++|+|.+. +. +|+|.++|.++....+..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~~~~~~~~~~v~q~------------ 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQR------------ 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCCSCCCCSSSEEEEE------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcceeecCCcceeeeHH------------
Confidence 5899999 99999999999999999999999998542 34 7999999987532111222222221
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
.+|+.. ..+ |++||++|..+|++|++|||| |+.
T Consensus 79 ---------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 79 ---------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp ---------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred ---------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 123321 123 899999999999999999999 998
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+...++ +. ++.|.+|++++|+.+ +...|||+++|..
T Consensus 112 ~~~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 112 TVETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 866544 33 356999999999965 4678999988864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-20 Score=181.51 Aligned_cols=153 Identities=24% Similarity=0.245 Sum_probs=99.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----cccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~-----~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
+-|++|++++|+||||||||||+++|+|....++ .+|.|++++.+.. ..+++++++|+..+++. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 5799999999999999999999999998544322 2346777765421 01234455555444433 44444332
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH-HHHHHHHHHHHhh-------CCCEEEEeCCCC
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEIII-------NPSLLFLDEPTS 324 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IA~aL~~-------~P~iLlLDEPTs 324 (640)
. ...+++ +++++..+++++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 112222 2333455555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHH-CCCEEEEEeCCCC---cHHHhccCEEEEEcCCe
Q 006571 325 GLDST-------T-----ALRIVQMLQDIAE-AGKTVVTTIHQPS---SRLFHKFDKLILLGKGS 373 (640)
Q Consensus 325 gLD~~-------s-----~~~i~~~L~~l~~-~g~TvI~~tH~~~---~~i~~~~D~i~vL~~G~ 373 (640)
+||+. . ..++++.|+++++ .|.|||+++|... ..+...||++++|++|+
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99984 2 2378888888765 4999999999532 13667899999998753
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=162.70 Aligned_cols=83 Identities=27% Similarity=0.321 Sum_probs=73.8
Q ss_pred CccCCcCCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 290 GSFVRGVSGGERKRVCIG------NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 290 ~~~~~~LSGGqrqRv~IA------~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
+..+..||||||||++|| |+|+.+|+++||||||+|||+.++..+.+.|+++.++|+|||++||++ ++...|
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~--~~~~~~ 129 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKDAA 129 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG--GGGGGC
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH--HHHHhC
Confidence 345678999999999876 899999999999999999999999999999999877789999999996 366899
Q ss_pred CEEEEE--cCCeE
Q 006571 364 DKLILL--GKGSL 374 (640)
Q Consensus 364 D~i~vL--~~G~i 374 (640)
|++++| .+|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-21 Score=187.15 Aligned_cols=146 Identities=19% Similarity=0.190 Sum_probs=113.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCC--CCCCHHHHHHHHHhcc
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF--PHLTVKETLTYAALLR 257 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~--~~lTV~Enl~~~~~~~ 257 (640)
.++|++++|+||||||||||+++|+|.+. + .++|++|++.++ +.+|+.+++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-~-------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~-- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-E-------------------RVALLPMDHYYKDLGHLPLEERLRVNYD-- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-G-------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-C-------------------CeEEEecCccccCcccccHHHhcCCCCC--
Confidence 57899999999999999999999998532 1 589999999876 56799998765321
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH----HHHHHHHHHHhhCCCEEEEeCCCCC-------C
Q 006571 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE----RKRVCIGNEIIINPSLLFLDEPTSG-------L 326 (640)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq----rqRv~IA~aL~~~P~iLlLDEPTsg-------L 326 (640)
.+. ....+++.+.++.+++.+..+.. +..+|+|| +||+++|++++.+|+++++||||++ |
T Consensus 61 ~~~----~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD----AFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG----GBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh----hhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 111 11234566777777776554432 35799996 4788999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHH-HHCCCEEEEEeCCCC
Q 006571 327 DSTTALRIVQMLQDI-AEAGKTVVTTIHQPS 356 (640)
Q Consensus 327 D~~s~~~i~~~L~~l-~~~g~TvI~~tH~~~ 356 (640)
|+.....+.+.+++. .++|+|++.++|+..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999875 456999999999743
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-19 Score=189.49 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=86.9
Q ss_pred EeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc-cCcE
Q 006571 153 TDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL-KSKI 231 (640)
Q Consensus 153 ~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~-~~~i 231 (640)
+||+++| +++.++++++|+| +|+||||+|||||++.|.|... .+.+| |.++|.++.... .+.+
T Consensus 2 ~~l~~~~--------~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~~~t~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKIERTVQIEAS 65 (301)
T ss_dssp ------------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------C
T ss_pred CCCcceE--------CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCcccCCcceEeeE
Confidence 3667776 4567999999998 9999999999999999998522 24578 888887764322 3568
Q ss_pred EEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh
Q 006571 232 GFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 232 ~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~ 311 (640)
++++|++.+...+||.|++.++..... .+.....+..+.+ ..+. +.+++|||||||+.+||+++
T Consensus 66 ~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~~------~~~~-----~~~~~sgg~rqrv~~ara~~ 129 (301)
T 2qnr_A 66 TVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYIDE------QFER-----YLHDESGLNRRHIIDNRVHC 129 (301)
T ss_dssp EEEEC---CCEEEEEEEEC----------------CTTHHHHHHH------HHHH-----HHHHHTSSCCTTCCCCCCCE
T ss_pred EEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHHH------HHHH-----HHHHhCHHhhhhhhhhhhhh
Confidence 999999888888999999887543210 0000111111111 1122 34689999999999998885
Q ss_pred hCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCc
Q 006571 312 INPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS 357 (640)
Q Consensus 312 ~~P~iLlLDEPTsg-LD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~ 357 (640)
++++||||++ ||+... +.++++.+. +.++|++.||+..
T Consensus 130 ----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 ----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp ----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred ----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 9999999984 999873 556666543 7889999999753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-18 Score=203.01 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=104.8
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.|++|||+++++|++++|+||||||||||||+|++.... ...|. .+... ...+++ -+.++..+.+.+
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-aq~g~------~vpa~-~~~i~~---~d~i~~~ig~~d 727 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-AQIGS------YVPAE-EATIGI---VDGIFTRMGAAD 727 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-HHHTC------CBSSS-EEEEEC---CSEEEEEC----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-hhcCc------cccch-hhhhhH---HHHHHHhCChHH
Confidence 56899999999999999999999999999999999863210 11110 00000 011221 122222222221
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
++ .. ....+|+|++|++.|+++ +.+|+++||||||+|||+
T Consensus 728 ~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~ 767 (918)
T 3thx_B 728 NI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTST 767 (918)
T ss_dssp ---------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCH
T ss_pred HH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCH
Confidence 11 11 124689999999999999 899999999999999999
Q ss_pred HHHHHHH-HHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEE-EcCCeEEE
Q 006571 329 TTALRIV-QMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLY 376 (640)
Q Consensus 329 ~s~~~i~-~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~v-L~~G~iv~ 376 (640)
.....+. ..++.+++ .|.|||++||++. +.+++|+.-- +.++++.+
T Consensus 768 ~~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~~~~v~n~~~~~ 816 (918)
T 3thx_B 768 HDGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNYSHQVGNYHMGF 816 (918)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhcccceEEEEEEE
Confidence 9999987 77777865 5999999999954 4566776421 34455443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-20 Score=211.02 Aligned_cols=194 Identities=14% Similarity=0.177 Sum_probs=120.6
Q ss_pred eEEEEeEEEEEeeccccccccccceece----------EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGI----------TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~v----------s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~ 218 (640)
.++++||++.|.. ..+++|+.+ +++++. +||+|||||||||||++|+|.. .|..+|.|++
T Consensus 10 ~i~~~~l~~~~~~------~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~ 79 (608)
T 3szr_A 10 SVAENNLCSQYEE------KVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTR 79 (608)
T ss_dssp ----------CHH------HHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCC
T ss_pred hhhhhhhhHHHHH------HHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEE
Confidence 5789999998831 123455444 355554 9999999999999999999964 3435899999
Q ss_pred CCEeCC-------hhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 219 NDHPYS-------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 219 ~G~~~~-------~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
+|.++. ..+++.++|++|++.+++.+||+||+.++....... ..++.
T Consensus 80 ~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~s---------- 133 (608)
T 3szr_A 80 CPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGIS---------- 133 (608)
T ss_dssp SCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCCC----------
T ss_pred cCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------ccccc----------
Confidence 998852 246788999999999999999999998753211000 00111
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCCc------
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEP------TSGLDSTTALRIVQMLQDIAEA--GKTVVTTIHQPSS------ 357 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP------TsgLD~~s~~~i~~~L~~l~~~--g~TvI~~tH~~~~------ 357 (640)
++++.++.+...+|+++|+||| |+|||+..+..+.++++++.++ +.++++++|+...
T Consensus 134 ---------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l 204 (608)
T 3szr_A 134 ---------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEAL 204 (608)
T ss_dssp ---------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHH
T ss_pred ---------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHH
Confidence 1112222223458999999999 9999999999999999997543 6788899999652
Q ss_pred HHHhc-----cCEEEEEcCCeEEEecChHHHHHHH
Q 006571 358 RLFHK-----FDKLILLGKGSLLYFGKASEAMAYF 387 (640)
Q Consensus 358 ~i~~~-----~D~i~vL~~G~iv~~G~~~~~~~~f 387 (640)
.+.+. ...|+|+.++.++..|+.+++.+..
T Consensus 205 ~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 205 SMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp HHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred HHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 11122 2458999999888888776554433
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.1e-19 Score=184.30 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=106.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-----h---c--cCcEEEEccCCCCCCCCCHHHHHH
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-----S---L--KSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-----~---~--~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
+|++++|+||||||||||+++|+|.+. +.+|+|.++|.++.. . + +..++||+|++.++|.+||+||+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 689999999999999999999999654 458999999998632 1 1 356999999999999899999998
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
++..... . ..+++..|+.+..+ +-++..++||++|||+|+.+|+.++| .||+.+.
T Consensus 179 ~~~~~~~--d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKARGY--D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHHHTC--S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHhCCC--C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 7532110 0 00122233322211 22455669999999999999994444 4555555
Q ss_pred HHHHHHHHHHHHC-CCEEEEEeCCCC
Q 006571 332 LRIVQMLQDIAEA-GKTVVTTIHQPS 356 (640)
Q Consensus 332 ~~i~~~L~~l~~~-g~TvI~~tH~~~ 356 (640)
.++++.++++.+. |.|+|++||+..
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 5666677777654 899999999843
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-18 Score=201.04 Aligned_cols=161 Identities=18% Similarity=0.167 Sum_probs=112.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|++++....+ ... +++.+++|+|++ |++++|+||||||||||||+|+|.... +..|.+. . ..+
T Consensus 550 ~i~i~~~rHP~----le~-~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v------p-a~~ 613 (765)
T 1ewq_A 550 RLQIRAGRHPV----VER-RTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV------P-AEE 613 (765)
T ss_dssp SEEEEEECCTT----GGG-TSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB------S-SSE
T ss_pred cEEEEEeECce----Ecc-CCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee------e-hhc
Confidence 46777663211 000 346899999999 999999999999999999999985421 2346432 1 123
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
..+++++| +|+.+++.||+. .++|+|+++++.+++
T Consensus 614 ~~i~~v~~---i~~~~~~~d~l~------------------------------------------~g~S~~~~e~~~la~ 648 (765)
T 1ewq_A 614 AHLPLFDG---IYTRIGASDDLA------------------------------------------GGKSTFMVEMEEVAL 648 (765)
T ss_dssp EEECCCSE---EEEECCC------------------------------------------------CCSHHHHHHHHHHH
T ss_pred cceeeHHH---hhccCCHHHHHH------------------------------------------hcccHHHHHHHHHHH
Confidence 45788877 555666665542 147899999999999
Q ss_pred HH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 309 EI--IINPSLLFLDEP---TSGLDSTTA-LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 309 aL--~~~P~iLlLDEP---TsgLD~~s~-~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
++ +.+|+++||||| |++||..+. ..+++.|++ .|.|+|++||+.. +..++ .--+.++++...
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~--l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHYFE--LTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH--HHTCC--CTTEEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH--HHHhh--hhcceEEEEEEE
Confidence 99 999999999999 999999875 578888776 4899999999953 44554 222344555443
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-19 Score=189.31 Aligned_cols=167 Identities=22% Similarity=0.190 Sum_probs=107.3
Q ss_pred cceece-EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcc----cE-EEECCEeCChhccCcEEEEccCCCCCCCC
Q 006571 171 DILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GS-ITYNDHPYSKSLKSKIGFVTQDDVLFPHL 244 (640)
Q Consensus 171 ~iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~----G~-I~~~G~~~~~~~~~~i~yV~Q~~~l~~~l 244 (640)
+.|+++ .+.|++|++++|+||||||||||++.|++....++.. |. |++++.+.. .++++++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~- 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD- 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-
Confidence 356665 6899999999999999999999999999865323333 67 888887641 23457777777665543
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh-------hCCCEE
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLL 317 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~-------~~P~iL 317 (640)
++.||+.+... . -|.+|+|++.++++++ .+|++|
T Consensus 195 ~v~~ni~~~~~------~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 195 EVLKHIYVARA------F---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp HHGGGEEEEEC------C---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred HHhhCEEEEec------C---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 55555433210 0 1345566666666665 689999
Q ss_pred EEeCCCCCCCHHH------------HHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 318 FLDEPTSGLDSTT------------ALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 318 lLDEPTsgLD~~s------------~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
++||||++||+.. ..+++..|+++++ .|.|||+++|... .....++.......|+++.++..
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTCS
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecCc
Confidence 9999999999862 3566777777765 4899999999854 23334455566666776655543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-19 Score=176.03 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=105.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~ 260 (640)
|++++|+||||||||||+++|+|.+. .+| |.++|.+..+ .+++++||++|+. ... ++++. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~--- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG--- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc---
Confidence 78999999999999999999999653 478 9999987642 3577899999975 111 11110 000
Q ss_pred CccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 006571 261 TLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRV-CIGN---EIIINPSLLFLDE--PTSGLDSTTALR 333 (640)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv-~IA~---aL~~~P~iLlLDE--PTsgLD~~s~~~ 333 (640)
++.++ ..+..+|. +...+|+|||+++ ++++ |+..+|++||||| |+..+|......
T Consensus 66 -----------------~~~~~~~~~~~v~~-~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 66 -----------------LEPPPGKRECRVGQ-YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CCCCSSSCCEESSS-SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------ccCCccccccccce-EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 01111 01123332 3456999999998 4454 6899999999999 898899875444
Q ss_pred HHHHHHHHHHCCCEEEE----EeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 334 IVQMLQDIAEAGKTVVT----TIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 334 i~~~L~~l~~~g~TvI~----~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|+++.+...++|+ ++|+.+ ..+.|+|..+.+|+|+...
T Consensus 128 ----l~~~l~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 128 ----VRQTLSTPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp ----HHHHHHCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred ----HHHHHhCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 4444444555553 238854 2567888888899988755
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-18 Score=199.45 Aligned_cols=157 Identities=17% Similarity=0.129 Sum_probs=110.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
++.+++|++++ ++|++++|+||||||||||||+|+|.... ...| ..+.. .+..+++++| +|+.+++.|
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~-~q~G------~~vpa-~~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM-AYIG------SYVPA-QKVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH-HTTT------CCBSS-SEEEECCCCE---EEEEEC---
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH-HhcC------cccch-hcccceeHHH---HHhhCCHHH
Confidence 46799999999 99999999999999999999999984321 1122 11211 1234666665 555666666
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
++..+ + ..+|+|++ +++.+..++.+|+++|||||++|+|+
T Consensus 662 ~l~~~--------------------------~-------------stf~~e~~-~~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG--------------------------R-------------STFMVEMT-ETANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHH-HHHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh--------------------------h-------------hhhhHHHH-HHHHHHHhccCCCEEEEECCCCCCCh
Confidence 55321 1 23566665 45555567899999999999999999
Q ss_pred HHHHHH-HHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 329 TTALRI-VQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 329 ~s~~~i-~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
.....+ ...++.+.+ .|.|+|++||++. +..+||++..+.+|++.+...
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEEc
Confidence 877775 788888887 4999999999964 457899888888888876543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.9e-18 Score=180.03 Aligned_cols=128 Identities=26% Similarity=0.320 Sum_probs=91.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
.+.+|++++|+|||||||||||++|+|.+. +..+|.|...+.++....+...++++|.......++.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~------------ 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF------------ 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH-HHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc-CCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH------------
Confidence 678999999999999999999999999653 2225777655544432233344555554322211111
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006571 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (640)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (640)
.+ +||++|..+|++|++|||| |.++. +.+
T Consensus 186 ----------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~~----~~~ 214 (356)
T 3jvv_A 186 ----------------------------------------SE----ALRSALREDPDIILVGEMR---DLETI----RLA 214 (356)
T ss_dssp ----------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHHH----HHH
T ss_pred ----------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHHH----HHH
Confidence 11 9999999999999999999 66654 344
Q ss_pred HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCC
Q 006571 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKG 372 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G 372 (640)
.+++..|+|||+++|+.+. + ..+||++.|..|
T Consensus 215 ~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 215 LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 4456679999999999764 3 789999998654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-17 Score=165.46 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=110.9
Q ss_pred ccceeceEE-EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh-hcc---CcEEEEccCCCCCCCC
Q 006571 170 KDILNGITG-SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-SLK---SKIGFVTQDDVLFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~-~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-~~~---~~i~yV~Q~~~l~~~l 244 (640)
.+.|+++.+ .+++|++++|+||||||||||++.|++... +.+|.|.+.+.+... .++ ..+++.+|+.... .+
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KL 85 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CE
Confidence 467889886 899999999999999999999999997543 235666665443221 111 0112222211000 00
Q ss_pred CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCC--EEEEeCC
Q 006571 245 TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPS--LLFLDEP 322 (640)
Q Consensus 245 TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~--iLlLDEP 322 (640)
.+ .. .. ...++ .. . .....|.++.++...+.....+|+ ++++|||
T Consensus 86 ~~-----------~~-~~------------~~~~~-~~----~----~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 86 II-----------ID-AL------------MKEKE-DQ----W----SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp EE-----------EE-CC------------C-----CT----T----BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred EE-----------Ee-cc------------ccccC-ce----e----eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 00 00 00 00000 00 0 012459999999888888888999 9999999
Q ss_pred CCCC--CHHHHHHHHHHHHHHHH-CCCEEEEEeCCCC-------cHHHhccCEEEEEcCCe
Q 006571 323 TSGL--DSTTALRIVQMLQDIAE-AGKTVVTTIHQPS-------SRLFHKFDKLILLGKGS 373 (640)
Q Consensus 323 TsgL--D~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~-------~~i~~~~D~i~vL~~G~ 373 (640)
|+++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.||+|++|++.+
T Consensus 133 ~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 133 SALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp GGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 9888 99999999999999875 5899999999972 33778899999998653
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-18 Score=170.74 Aligned_cols=178 Identities=14% Similarity=0.101 Sum_probs=98.3
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCC---CCcccEEEECCEeCCh
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME---PTVGGSITYNDHPYSK 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~---~~~~G~I~~~G~~~~~ 225 (640)
.|+++|++|.|. ..+|++ +.+.+|..++|+|+||||||||+|.|+|.... .+..|.+.+.+.-.
T Consensus 3 ~l~~~~~~~~~~---------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~-- 69 (210)
T 1pui_A 3 NLNYQQTHFVMS---------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE-- 69 (210)
T ss_dssp --------CEEE---------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE--
T ss_pred chhhhhhhheee---------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE--
Confidence 478999999982 257888 88999999999999999999999999985410 13456554322100
Q ss_pred hccCcEEEEccCCCC----CCCCC---HHHHHHHHHhc-c----------CCCCccHHHHHHHHHHHHHHcCCCcccccc
Q 006571 226 SLKSKIGFVTQDDVL----FPHLT---VKETLTYAALL-R----------LPNTLTKQQKEKRAIDVINELGLERCQDTM 287 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l----~~~lT---V~Enl~~~~~~-~----------~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~ 287 (640)
+...+-++ +.+.+ .+.-. .+..+...... + .....+. ....+.++++..+++...
T Consensus 70 -~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~--- 142 (210)
T 1pui_A 70 -VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAVLV--- 142 (210)
T ss_dssp -EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCEEE---
T ss_pred -ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCeEE---
Confidence 00011111 11110 00000 11122211110 0 0001111 223455566666665321
Q ss_pred ccCccCCcCCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCE
Q 006571 288 IGGSFVRGVSGGERKR-VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKT 347 (640)
Q Consensus 288 vg~~~~~~LSGGqrqR-v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~T 347 (640)
+++ +...+|+||||| +.++++++.+|+++++|||||++|.....++++.|.++..+|.|
T Consensus 143 v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 143 LLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 122 245699999999 89999999999999999999999999999999999998765644
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-18 Score=186.62 Aligned_cols=164 Identities=16% Similarity=0.202 Sum_probs=97.4
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhc
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSL 227 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~ 227 (640)
..|+++||+++| +.+.+++|+||+| +|+||||||||||+|+|+|.....+..|.+.+++.+ ...
T Consensus 10 ~~l~~~~l~~~y--------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~--t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQV--------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK--TVQ 73 (418)
T ss_dssp -----CCCCCCT--------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------CCE
T ss_pred CcEEEEecceeE--------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--cee
Confidence 358999999876 3567999999998 999999999999999999965321212222222211 112
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.+++++|++.+++.+||.||+.++.... .......+.+.++ ..++.+++||++||
T Consensus 74 ~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr~~Ia 130 (418)
T 2qag_C 74 VEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAESRVN 130 (418)
T ss_dssp EEEEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTSCC-C
T ss_pred eeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence 356899999998888899999998764321 1111111222221 13566788899999
Q ss_pred HHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 308 NEIIINPS---LLFLDEPT-SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 308 ~aL~~~P~---iLlLDEPT-sgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
|+++.+|+ +|++|||| .+||+... ++++.+.. +.+||+++|..
T Consensus 131 Ral~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~ 177 (418)
T 2qag_C 131 RRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKA 177 (418)
T ss_dssp CCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEEST
T ss_pred HHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEcc
Confidence 99999999 99999999 69999873 44445543 78888888874
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-16 Score=160.27 Aligned_cols=151 Identities=17% Similarity=0.212 Sum_probs=104.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
-+++|++++|+||||||||||++.|++... .|.++ .|.+... ...+.|+..++..- .+.+.+.- +..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~~-~g~~~~~--~~~v~~~~~e~~~~---~~~~r~~~---~g~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPDL-LEVGELP--TGPVIYLPAEDPPT---AIHHRLHA---LGA 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCCT-TCCCCCC--CCCEEEEESSSCHH---HHHHHHHH---HHT
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCCc-CCCccCC--CccEEEEECCCCHH---HHHHHHHH---HHh
Confidence 488999999999999999999999998432 45553 3443321 34688887765320 12222211 101
Q ss_pred CCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HH
Q 006571 259 PNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS--GLDSTTA---LR 333 (640)
Q Consensus 259 ~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs--gLD~~s~---~~ 333 (640)
.... ....++++.+++.+..+. .+..||+||+|++ ++++.+|+++++||||+ ++|.... .+
T Consensus 93 --~~~~----~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 93 --HLSA----EERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp --TSCH----HHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred --hcCh----hhhhhccCceEEeecCCC-----CcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 1121 234566777877665443 3568999998865 68889999999999999 9998544 88
Q ss_pred HHHHHHHHHH-CCCEEEEEeCCCC
Q 006571 334 IVQMLQDIAE-AGKTVVTTIHQPS 356 (640)
Q Consensus 334 i~~~L~~l~~-~g~TvI~~tH~~~ 356 (640)
+++.|+++++ .|+|||+++|+..
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 8899999864 5999999999854
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-17 Score=164.51 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=103.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCC-CcccEEEECCEeCChhccCcEEEEccCCCCCCCCCH----HHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP-TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV----KETLT 251 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~-~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV----~Enl~ 251 (640)
.-..++|++++|+||||||||||+++|+|... | ...|.|.+++++.....++.++|++|++..|+.+++ .||+.
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSC-TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCC-CCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 34678999999999999999999999999653 2 368999999987655445679999998766654444 22221
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
+... . .+.| +++ +..++..++++||| ||+.++
T Consensus 89 ~~~~-----------------------------------~--yg~~---~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 89 VFGN-----------------------------------Y--YGTS---REA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp ETTE-----------------------------------E--EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHhc-----------------------------------c--CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 1100 0 0111 121 34555668999999 999999
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 332 ~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
..+.+.+. +++||++++|++.. +. .|+ +.+| .++++++...+.
T Consensus 121 ~~i~~~l~----~~~tI~i~th~~~~-l~---~Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 121 QQIRQKMP----HARSIFILPPSKIE-LD---RRL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHCT----TCEEEEEECSSHHH-HH---HHH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHcc----CCEEEEEECCCHHH-HH---HHH--HHcC----CCCHHHHHHHHH
Confidence 99999876 58999999999653 32 343 7778 678888876664
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-19 Score=175.84 Aligned_cols=170 Identities=13% Similarity=0.063 Sum_probs=113.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTL 262 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~ 262 (640)
|++++|+||||||||||+++|++. .+|.+.++|.++... ..+++++|.....+.+|+++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFL---- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH----
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHH----
Confidence 789999999999999999999972 368999998765322 235677776654555688888876532110
Q ss_pred cHHHHHHHHHHHHHHcCCCccccccccC---ccCCcC--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 006571 263 TKQQKEKRAIDVINELGLERCQDTMIGG---SFVRGV--SGGERKRVCIGN------EIIINPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 263 ~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~L--SGGqrqRv~IA~------aL~~~P~iLlLDEPTsgLD~~s~ 331 (640)
. -+.....+...+. ...+.+ |+|++|++.++. +++.+|+...+|+ +||+...
T Consensus 71 -------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 71 -------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp -------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred -------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 0 0100001110000 011234 889888888888 9999999888884 8999888
Q ss_pred HHHHHHHHHHHHCCCEEEEEeCC-CCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 332 LRIVQMLQDIAEAGKTVVTTIHQ-PSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 332 ~~i~~~L~~l~~~g~TvI~~tH~-~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
.. .+.++.+.+.+.++|.++|. +.+ +.+.||+|+ ++|+++..|+++-+.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~-~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTN-LNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGG-HHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhh-HHHHHHHHh--hCCcEEEeecCCchh
Confidence 87 88888776567899999998 654 778899998 999999999887653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=139.39 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=73.1
Q ss_pred CCcCCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 293 VRGVSGGERKRVCIGNEIII----NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~----~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
+..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|+++|+. .+...||+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCH--HHHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecH--HHHHhCCEEEE
Confidence 46799999999999999974 4699999999999999999999999999865 56899999995 35789999986
Q ss_pred E--cCCeE-EEecChHHHHH
Q 006571 369 L--GKGSL-LYFGKASEAMA 385 (640)
Q Consensus 369 L--~~G~i-v~~G~~~~~~~ 385 (640)
+ .+|.. +...+.++...
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 5 46743 33444444443
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-15 Score=150.25 Aligned_cols=155 Identities=20% Similarity=0.210 Sum_probs=100.8
Q ss_pred ccceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 170 KDILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 170 ~~iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.+.|+++. +-+++|++++|+||||||||||++.|++ . . ++. +.|+..++.+ +..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~--~-~~~---------------v~~i~~~~~~----~~~- 60 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L--S-GKK---------------VAYVDTEGGF----SPE- 60 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H--H-CSE---------------EEEEESSCCC----CHH-
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H--c-CCc---------------EEEEECCCCC----CHH-
Confidence 35677776 4899999999999999999999999998 1 1 222 2233332211 111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE--RKRVCIGNEIIIN-PSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq--rqRv~IA~aL~~~-P~iLlLDEPTsg 325 (640)
.+.-... .. .... +++++.+. +...++++ +++++.+++++.+ |+++++||||+.
T Consensus 61 ~~~~~~~-~~--~~~~-------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 61 RLVQMAE-TR--GLNP-------EEALSRFI-------------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHH-TT--TCCH-------HHHHHHEE-------------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHH-hc--CCCh-------HHHhhcEE-------------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 1110000 00 1111 11222221 12344443 6788889999986 999999999999
Q ss_pred CCHHH--------HHHHHHHHHHHHHC-CCEEEEEeCCCCc------------HHHhccCEEEEEcCC
Q 006571 326 LDSTT--------ALRIVQMLQDIAEA-GKTVVTTIHQPSS------------RLFHKFDKLILLGKG 372 (640)
Q Consensus 326 LD~~s--------~~~i~~~L~~l~~~-g~TvI~~tH~~~~------------~i~~~~D~i~vL~~G 372 (640)
+|+.. ..++++.|++++++ |.|||+++|.... .+...||.+++|++.
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 99743 25566778888754 8999999998542 466789999999764
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-16 Score=173.64 Aligned_cols=174 Identities=11% Similarity=0.127 Sum_probs=111.8
Q ss_pred cccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCH
Q 006571 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV 246 (640)
+.+ |++||+++++|++ ++|+||||||||||+|+|+|... .|.-. .... ....++.++|++|++.+++.+||
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~~-~~~~-~~~~~~~i~~v~Q~~~l~~~ltv 99 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEPA-THTQ-PGVQLQSNTYDLQESNVRLKLTI 99 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC-SSCEEEEEEEEEEC--CEEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCcC-CCCC-ccceEeeEEEEeecCccccccch
Confidence 345 9999999999999 99999999999999999999532 22111 0000 11234579999999998888999
Q ss_pred HHHHHHHHhccCCCCc-cH---HHHHHHHHHHHHHc-CCCc----ccccc----cc--CccCCcCCHHHHHHHHHHHHHh
Q 006571 247 KETLTYAALLRLPNTL-TK---QQKEKRAIDVINEL-GLER----CQDTM----IG--GSFVRGVSGGERKRVCIGNEII 311 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~-~~---~~~~~~v~~~l~~l-gL~~----~~~t~----vg--~~~~~~LSGGqrqRv~IA~aL~ 311 (640)
.||+.|+.... ... .. ........+.+... ++.. ..|+. +. .....+|+-.+ +.|+++|.
T Consensus 100 ~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~ 174 (427)
T 2qag_B 100 VSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLD 174 (427)
T ss_dssp EEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTC
T ss_pred hhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHh
Confidence 99997753210 000 00 11233455556554 4431 12221 10 01113566666 78999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCCEEEEEeCC
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQD-IAEAGKTVVTTIHQ 354 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~-l~~~g~TvI~~tH~ 354 (640)
.+++|+++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 175 ~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 175 SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999988999999986 76779999888754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-15 Score=164.16 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=99.2
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCc-ccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTV-GGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~-~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
.+|++++ +++|++++|+||||||||||+++|+|.+. +. +|+|.+.|.++...++..++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIEYVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCCSCCCCSSSEEEEEE-----------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHhhhhccCceEEEeee-----------
Confidence 4678776 89999999999999999999999998543 33 69998877766434566788888841
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+|+. +..+ +.+|+++|..+|++|++|||+ |+.
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 2221 0234 469999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 330 TALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 330 s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
+... .++. +..|.+|++++|+.+ +...+||++.|.
T Consensus 223 ~~~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l~ 257 (372)
T 2ewv_A 223 TVET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 257 (372)
T ss_dssp HHHH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHTS
T ss_pred HHHH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHhc
Confidence 6433 3443 356899999999954 567889987764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-16 Score=148.72 Aligned_cols=153 Identities=12% Similarity=0.025 Sum_probs=96.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh--ccCcEEEEccCCCCCCCCCHHHHHHHHHhc
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS--LKSKIGFVTQDDVLFPHLTVKETLTYAALL 256 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~--~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~ 256 (640)
.+++|++++|+||||||||||+++|+|. +..|.|.++|.++... .++.++|++|+.. +.+||.||+.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc----cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 4779999999999999999999999985 2369999999875322 1234678888654 357899998765421
Q ss_pred cCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 006571 257 RLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336 (640)
Q Consensus 257 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~ 336 (640)
...... ...++.++..+++..... . +..+..+|+|++||+.++|++.++|+++ +|+.....+.+
T Consensus 79 ~~~~~~-----~~~~~~~~~~~~l~~~~~--~-~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGY-----FVILDGVVRPDWLPAFTA--L-ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSC-----EEEECSCCCTTTTHHHHT--T-CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCC-----eEEEeccCcHHHHHHHHh--c-CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 100000 000000001111111110 0 1123469999999999999999999876 68888777777
Q ss_pred HHHHHHHCCCEEEEEeC
Q 006571 337 MLQDIAEAGKTVVTTIH 353 (640)
Q Consensus 337 ~L~~l~~~g~TvI~~tH 353 (640)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665432334444443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-16 Score=165.43 Aligned_cols=152 Identities=19% Similarity=0.205 Sum_probs=107.9
Q ss_pred EEEeEEEE---Eeeccccccccccce---------eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE
Q 006571 151 KFTDVTYK---VILKGMTSSEEKDIL---------NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY 218 (640)
Q Consensus 151 ~~~~vs~~---~~~~~~~~~~~~~iL---------~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~ 218 (640)
+|+|++|+ |+. .++.+| +++|+.+++|++++|+||||||||||+++|+|.+ + +.+|.|.+
T Consensus 137 ~f~~v~f~~~~Y~~------~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~-~~~g~I~i 208 (361)
T 2gza_A 137 FFKHVRPMSKSLTP------FEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-P-FDQRLITI 208 (361)
T ss_dssp TTSCCCCSCSCCCH------HHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-C-TTSCEEEE
T ss_pred CcCccccccccccc------hhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-C-CCceEEEE
Confidence 67788876 521 123455 9999999999999999999999999999999854 3 46899999
Q ss_pred CCEeC-C-hhccCcEEEEc-cCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCc
Q 006571 219 NDHPY-S-KSLKSKIGFVT-QDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRG 295 (640)
Q Consensus 219 ~G~~~-~-~~~~~~i~yV~-Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~ 295 (640)
+|..- . ...++.++|++ |++.+ +
T Consensus 209 e~~~e~~~~~~~~~v~~v~~q~~~~------------------------------------------------------~ 234 (361)
T 2gza_A 209 EDVPELFLPDHPNHVHLFYPSEAKE------------------------------------------------------E 234 (361)
T ss_dssp ESSSCCCCTTCSSEEEEECC------------------------------------------------------------
T ss_pred CCccccCccccCCEEEEeecCcccc------------------------------------------------------c
Confidence 98532 2 12567789998 65432 0
Q ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 296 VSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
++++..+|-.|+.++..+|+.+++|||+. .++.+.|+.+.....|++.++|..+ ....+||+..+..|.
T Consensus 235 ~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 235 ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp ----CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 11222355666667777899999999986 2455667766554458899999965 567889999988764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-18 Score=181.58 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=102.8
Q ss_pred ceeceEEEEeC--CeEEEEECCCCCcHHHHHHHHHcCCCCCCcc----cEEEEC----CEeCC---hhccCcEEEEccCC
Q 006571 172 ILNGITGSVNP--GEVLALMGPSGSGKTTLLNLLSGRLMEPTVG----GSITYN----DHPYS---KSLKSKIGFVTQDD 238 (640)
Q Consensus 172 iL~~vs~~i~~--Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~----G~I~~~----G~~~~---~~~~~~i~yV~Q~~ 238 (640)
+.+.|++.|.+ |+.++|+||||||||||+++|+|.+. +.+ |+|.++ |.+.. ..+ +.|++++|+.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~ 233 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRY 233 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHH
Confidence 56789999999 99999999999999999999999653 346 776653 22210 011 2233433332
Q ss_pred CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh-hCCCEE
Q 006571 239 VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INPSLL 317 (640)
Q Consensus 239 ~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~-~~P~iL 317 (640)
.+++ .|+.|||.+. ..+..++ .+..+|+|++||..+++++. .+|+++
T Consensus 234 ~~~~-~t~~~nl~~~--------------------------~~~~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 234 IDYA-VRHSHKIAFI--------------------------DTDFITT-----QAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH-HHHCSSEEEE--------------------------SSCHHHH-----HHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH-HhccCCEEEE--------------------------eCCchHH-----HHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 2221 2222222211 0000111 11246677788888888775 599999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEc
Q 006571 318 FLDE---PT------SGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLG 370 (640)
Q Consensus 318 lLDE---PT------sgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~ 370 (640)
|||| |+ .++|+..+..+.+.|+++.+ .+.+||+++|. . ...+++|++.+++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 9999 65 58999999999999998764 48899999975 3 3456667665554
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-17 Score=165.35 Aligned_cols=153 Identities=15% Similarity=0.191 Sum_probs=101.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHH---cCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRL 258 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~---G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~ 258 (640)
++++++|+||||||||||+++|+ |... +..|+|.++|.+........+.+++|+..+++..++.+++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 9543 457888887765433333445667888888888899999987532100
Q ss_pred C-----CCccHHHHHHHHHHHHHHcCCC--ccc-------cccccCccCCcCCHHHHHHHHHHHHH-hhCCCEEEEe---
Q 006571 259 P-----NTLTKQQKEKRAIDVINELGLE--RCQ-------DTMIGGSFVRGVSGGERKRVCIGNEI-IINPSLLFLD--- 320 (640)
Q Consensus 259 ~-----~~~~~~~~~~~v~~~l~~lgL~--~~~-------~t~vg~~~~~~LSGGqrqRv~IA~aL-~~~P~iLlLD--- 320 (640)
. ...+... ..++.+....... -.. -..+.++.+..||| |+ ++| +.+|++++||
T Consensus 104 ~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 104 GQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp TSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred CCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 0 0111111 1122221111111 000 01112334567999 66 777 9999999999
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHCC
Q 006571 321 -EPTSGLDSTTALRIVQMLQDIAEAG 345 (640)
Q Consensus 321 -EPTsgLD~~s~~~i~~~L~~l~~~g 345 (640)
|||++||..+...+.+.|+++.+++
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999999999999999887654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-17 Score=175.42 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=102.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC------CCcccEEEECCEeCCh-------------------hccCcEEEE---c
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLME------PTVGGSITYNDHPYSK-------------------SLKSKIGFV---T 235 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~------~~~~G~I~~~G~~~~~-------------------~~~~~i~yV---~ 235 (640)
++++|+|+||||||||+|.|.|.... .+..|+|.+||.++.. .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999985411 2468999999988642 123457777 6
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCCc---cHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNTL---TKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII 312 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~ 312 (640)
|++.+++..+|.||+.++.....-..+ .......++..++..+++.+..+.. .++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------NQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------HHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------hhchHHHHHHHhCCEEEEE
Confidence 777666677888877653100000000 0000000111122233343333322 2689999999988888888
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
+|+++ ||| ..+.+.|+++. .+.||++++|++.+
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~ 191 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID 191 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC
Confidence 99887 888 67888888874 58899999998653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-15 Score=162.78 Aligned_cols=153 Identities=14% Similarity=0.151 Sum_probs=105.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------h--ccCcEEEEccCCCCCC
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------S--LKSKIGFVTQDDVLFP 242 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~--~~~~i~yV~Q~~~l~~ 242 (640)
-+++||++++|++++|+||||||||||+++|+|.+. +.+|+|.++|.+... . .++.|+|++|+..+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 468999999999999999999999999999999654 358999998776532 1 2567999999988888
Q ss_pred CCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh-hCC-CEEEEe
Q 006571 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII-INP-SLLFLD 320 (640)
Q Consensus 243 ~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~-~~P-~iLlLD 320 (640)
.+||++|+.++..... ++ -+++..|+.+... .+-.--+|++.+++++. ..| .+||..
T Consensus 361 ~~tV~e~l~~a~~~~~--Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvL 419 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNI--DV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTI 419 (503)
T ss_dssp HHHHHHHHHHHHHTTC--SE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEE
T ss_pred HHHHHHHHHHHHhcCC--CE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEe
Confidence 8999999998743110 00 0112222221111 12223357888888764 456 356555
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQ 354 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~ 354 (640)
+||+|.|.. +.++.+.+ .+.|.|++||-
T Consensus 420 DattGq~al------~~ak~f~~~~~itgvIlTKL 448 (503)
T 2yhs_A 420 DASTGQNAV------SQAKLFHEAVGLTGITLTKL 448 (503)
T ss_dssp EGGGTHHHH------HHHHHHHHHTCCSEEEEECG
T ss_pred cCcccHHHH------HHHHHHHhhcCCCEEEEEcC
Confidence 688886554 33444443 48899999994
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-13 Score=145.13 Aligned_cols=78 Identities=27% Similarity=0.392 Sum_probs=68.1
Q ss_pred ccCCcCCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhcc
Q 006571 291 SFVRGVSGGERKRV------CIGNEIIIN-PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKF 363 (640)
Q Consensus 291 ~~~~~LSGGqrqRv------~IA~aL~~~-P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~ 363 (640)
..+..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||++||++. +...|
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~ 352 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVA 352 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGC
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhC
Confidence 34568999999988 567889999 99999999999999999999999999874 3569999999964 56889
Q ss_pred CEEEEEcC
Q 006571 364 DKLILLGK 371 (640)
Q Consensus 364 D~i~vL~~ 371 (640)
|++++|++
T Consensus 353 d~~~~l~k 360 (371)
T 3auy_A 353 DVIINVKK 360 (371)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 99999973
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=137.48 Aligned_cols=158 Identities=20% Similarity=0.311 Sum_probs=88.5
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCC-----cccEEEECCEeCChhccCcEEEEccCCCCCCCCC
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPT-----VGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~-----~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lT 245 (640)
.|+.+- +-+++|++++|+||||||||||++.|++....++ ..|.+++++.+.. .
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~--------------------~ 71 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF--------------------R 71 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------C
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc--------------------C
Confidence 344443 5799999999999999999999999998422122 3466666655320 1
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH-HHHHHHHh--hCCCEEEEeCC
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR-VCIGNEII--INPSLLFLDEP 322 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR-v~IA~aL~--~~P~iLlLDEP 322 (640)
..+-........ ...+ ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||
T Consensus 72 ~~~~~~~~~~~g----~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 72 PERLLAVAERYG----LSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHTT----CCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHcC----CCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 110000000000 0000 11111100 11244444332 23333343 48999999999
Q ss_pred CCCCCHH-------H-----HHHHHHHHHHHHHC-CCEEEEEeCCCCcH------------------HHhccCEEEEEcC
Q 006571 323 TSGLDST-------T-----ALRIVQMLQDIAEA-GKTVVTTIHQPSSR------------------LFHKFDKLILLGK 371 (640)
Q Consensus 323 TsgLD~~-------s-----~~~i~~~L~~l~~~-g~TvI~~tH~~~~~------------------i~~~~D~i~vL~~ 371 (640)
++.+|+. . ...++..|++++++ |.|||+++|..... +...||.+++|++
T Consensus 129 ~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 129 TALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp SGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred hHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 9999985 3 34566667776654 99999999964321 2227899999987
Q ss_pred C
Q 006571 372 G 372 (640)
Q Consensus 372 G 372 (640)
|
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.42 E-value=7.8e-16 Score=148.03 Aligned_cols=136 Identities=20% Similarity=0.258 Sum_probs=88.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCC--cccEEEECCEeCC-------hhcc-CcEE----EEccCCCCCCCCCHHHH
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPT--VGGSITYNDHPYS-------KSLK-SKIG----FVTQDDVLFPHLTVKET 249 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~--~~G~I~~~G~~~~-------~~~~-~~i~----yV~Q~~~l~~~lTV~En 249 (640)
++++|+|+||||||||+++|+|.+. +. ..|.|.+||.++. +.+| +.+| +++|+..+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec-
Confidence 5899999999999999999998543 22 2699999998742 2344 3567 889987765 110
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHH-cCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEE-------EEeC
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINE-LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLL-------FLDE 321 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iL-------lLDE 321 (640)
. .. +....++++++. + + ..|+.++. +||||||||++|||+++.+|++. .=|.
T Consensus 77 ---------~---~~-~~~a~l~~~i~~~l--~-g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~ 136 (171)
T 2f1r_A 77 ---------V---SE-EEGNDLDWIYERYL--S-DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDE 136 (171)
T ss_dssp ---------C---CH-HHHTCHHHHHHHHT--T-TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSS
T ss_pred ---------C---Ch-hhhhCHHHHHHhhC--C-CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecC
Confidence 0 01 112245667765 4 3 57888874 59999999999999999999873 2245
Q ss_pred CCCC---CCHHHHHHHHHHHHHHHHCC
Q 006571 322 PTSG---LDSTTALRIVQMLQDIAEAG 345 (640)
Q Consensus 322 PTsg---LD~~s~~~i~~~L~~l~~~g 345 (640)
|..+ +|......+.+.+.+...+|
T Consensus 137 ~~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 137 RVDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CCSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred CcccCcccCcccHHHHHHHHHHHHhcc
Confidence 4322 33444567777776655554
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-14 Score=151.40 Aligned_cols=124 Identities=20% Similarity=0.227 Sum_probs=87.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC-CEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-DHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~-G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
.-++++++. .+|++++|+||||||||||+|+|+|.... +..|+|.++ |++.....++.+++++|+..+++..||+|+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 346677764 48999999999999999999999996531 457999987 765533445679999999999988899984
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEI 310 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL 310 (640)
+ + ..++.++..+.+.++++.+|+.+..+.. +.++| ||+||++||+++
T Consensus 282 ---~----l-~~l~~~e~~~~~~e~l~~~gl~~f~~~~-----~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 ---G----L-WHLEPEQITQGFVEFHDYLGHCKYRDCK-----HDADP-GCAIREAVENGA 328 (358)
T ss_dssp ---C----C-CCCCHHHHHHTSGGGGGGTTCSSSTTCC-----SSSCT-TCHHHHHHHHTS
T ss_pred ---h----h-cCCCHHHHHHHHHHHHHHcCCchhcCCC-----cccCC-HHHHHHHHHhcC
Confidence 1 1 1245556667788888889987766653 46899 999999999864
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-17 Score=171.02 Aligned_cols=173 Identities=15% Similarity=0.216 Sum_probs=114.6
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+.+|+++.| +.+.+|+++|+++++|++++|+||||||||||+|+|+|.+. +.+|+|.+.|.++..
T Consensus 30 ie~~~~~~~~--------~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~ 99 (337)
T 2qm8_A 30 AESRRADHRA--------AVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTG 99 (337)
T ss_dssp HTCSSHHHHH--------HHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSC
T ss_pred HeeCCccccc--------ChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccc
Confidence 5566666655 34579999999999999999999999999999999999653 458999999987632
Q ss_pred ----hccCcEEEEccCCCCCCCCC------------HHHHHHHHH-----------------------------hccCCC
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLT------------VKETLTYAA-----------------------------LLRLPN 260 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lT------------V~Enl~~~~-----------------------------~~~~~~ 260 (640)
..++++++++|++.+|+..+ ++|.+.... .+..+.
T Consensus 100 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 100 GSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG 179 (337)
T ss_dssp CCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC
T ss_pred cchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC
Confidence 23567999999988875321 233331110 000000
Q ss_pred CccHHHHH---HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHH
Q 006571 261 TLTKQQKE---KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIII------NPSLLFLDEPTSGLDSTTA 331 (640)
Q Consensus 261 ~~~~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~------~P~iLlLDEPTsgLD~~s~ 331 (640)
...+.. +.+.+....+.+ +..|. .....+|+|++|++..+++++. +|++++ ||++|....
T Consensus 180 --~~~~~~~i~~~i~~~~~ivvl-NK~Dl----~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi 248 (337)
T 2qm8_A 180 --AGDELQGIKKGIFELADMIAV-NKADD----GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGL 248 (337)
T ss_dssp --C------CCTTHHHHCSEEEE-ECCST----TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSH
T ss_pred --CcccHHHHHHHHhccccEEEE-Echhc----cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCH
Confidence 000000 001111111111 11121 0124589999999999999987 688887 999999999
Q ss_pred HHHHHHHHHHHH
Q 006571 332 LRIVQMLQDIAE 343 (640)
Q Consensus 332 ~~i~~~L~~l~~ 343 (640)
.++++.|.++..
T Consensus 249 ~~L~~~I~~~~~ 260 (337)
T 2qm8_A 249 DSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-14 Score=151.39 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=98.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hcc--CcEEEEccCCCCCCCCCHHHH
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLK--SKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~--~~i~yV~Q~~~l~~~lTV~En 249 (640)
.++|++++|+||||||||||++.|+|.+. +.+|+|.++|.++.. .++ ..+.+++|+..++|.+||+||
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 36899999999999999999999999653 458999999998742 122 346699999999999999999
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
+.++..... .. -+++..|+.+..+. ....|| .|++++..++.+++||.+|.
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~~~-----l~~eL~-------~i~ral~~de~llvLDa~t~----- 254 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETNRN-----LMDEMK-------KIARVTKPNLVIFVGDALAG----- 254 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTTTC-----HHHHHH-------HHHHHHCCSEEEEEEEGGGT-----
T ss_pred HHHHHhccc--hh----------hHHhhccchhHHHH-----HHHHHH-------HHHHHhcCCCCEEEEecHHH-----
Confidence 987642110 00 01112232221111 112233 48899998888888885554
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEeCCC
Q 006571 330 TALRIVQMLQDIAE-AGKTVVTTIHQP 355 (640)
Q Consensus 330 s~~~i~~~L~~l~~-~g~TvI~~tH~~ 355 (640)
.++++.++.+.+ .+.|+|++||..
T Consensus 255 --~~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 255 --NAIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp --THHHHHHHHHHHHSCCCEEEEECGG
T ss_pred --HHHHHHHHHHHHhcCCCEEEEeCcC
Confidence 355566666653 589999999963
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.41 E-value=7.4e-15 Score=139.36 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=66.9
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc-CcEEEEccCCCCCCCCCH
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK-SKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~-~~i~yV~Q~~~l~~~lTV 246 (640)
+++.+++++||++++|++++|+||||||||||+|+|+|.+ | .+|+|.++|.++..... ++ +++|++.+| .+||
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~-~~G~V~~~g~~i~~~~~~~~--~~~q~~~l~-~ltv 91 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--G-HQGNVKSPTYTLVEEYNIAG--KMIYHFDLY-RLAD 91 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--T-CCSCCCCCTTTCEEEEEETT--EEEEEEECT-TCSC
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--C-CCCeEEECCEeeeeeccCCC--cceeccccc-cCCc
Confidence 3467999999999999999999999999999999999965 3 47999999988743221 22 899998888 8999
Q ss_pred HHHHHH
Q 006571 247 KETLTY 252 (640)
Q Consensus 247 ~Enl~~ 252 (640)
.||+.+
T Consensus 92 ~e~l~~ 97 (158)
T 1htw_A 92 PEELEF 97 (158)
T ss_dssp TTHHHH
T ss_pred HHHHHH
Confidence 999965
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.7e-14 Score=148.52 Aligned_cols=126 Identities=21% Similarity=0.277 Sum_probs=88.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh----c
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL----L 256 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~----~ 256 (640)
+++.+++|.||||||||||.+.|.+.+. . .| . . ++.+.+|+||+.+++. ++++|+.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~--~-~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM--E-KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--H-HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh--h-cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchh
Confidence 4789999999999999999999998552 1 22 0 1 3456677999999975 99999988631 1
Q ss_pred c---CCCCccHHHHHHHHHHHHHHcCCCccccc------cccCccCCcCCHHHHHHHHHH--HHHhhCCCEEEEeCCCCC
Q 006571 257 R---LPNTLTKQQKEKRAIDVINELGLERCQDT------MIGGSFVRGVSGGERKRVCIG--NEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 257 ~---~~~~~~~~~~~~~v~~~l~~lgL~~~~~t------~vg~~~~~~LSGGqrqRv~IA--~aL~~~P~iLlLDEPTsg 325 (640)
. .|... ..+.+.+.++.+.- ..+| .+ ..+...+||||+||+++| +++ +|+|||+||||++
T Consensus 94 ~~~g~p~a~----d~~~l~~~l~~l~~--g~~t~~~~~v~~-p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ 164 (290)
T 1odf_A 94 QGRGLPGTH----DMKLLQEVLNTIFN--NNEHPDQDTVVL-PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLG 164 (290)
T ss_dssp SSSCSTTSB----CHHHHHHHHHHHTC--------CCEEEE-CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTT
T ss_pred hhccCcchh----HHHHHHHHHHHhhc--cCccccCcceee-ccCccccCCccccccccccceEc--CCCEEEEeCcccc
Confidence 1 12222 23445666766632 2121 11 123467999999999997 555 9999999999999
Q ss_pred CCHHH
Q 006571 326 LDSTT 330 (640)
Q Consensus 326 LD~~s 330 (640)
+|+..
T Consensus 165 ld~~~ 169 (290)
T 1odf_A 165 FNPIL 169 (290)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 99864
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=142.57 Aligned_cols=75 Identities=21% Similarity=0.279 Sum_probs=68.0
Q ss_pred CcCCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEII----INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~----~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.+.++|++||++ .....||++++|
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 58999999999999999999999999999865578999999994 356789999998
Q ss_pred c
Q 006571 370 G 370 (640)
Q Consensus 370 ~ 370 (640)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.8e-13 Score=128.91 Aligned_cols=49 Identities=20% Similarity=0.193 Sum_probs=43.3
Q ss_pred HhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcH
Q 006571 310 IIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSR 358 (640)
Q Consensus 310 L~~~P~iLlLDEPTs-gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~ 358 (640)
.+.+|++|+||||++ ++|+..+..+.+.+.+..++|+++|++||.+..+
T Consensus 97 ~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 97 TVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC
T ss_pred HhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhH
Confidence 355999999999995 9999999999999998887899999999997654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-13 Score=124.19 Aligned_cols=98 Identities=14% Similarity=0.313 Sum_probs=71.8
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
.+|+++ +|+.++|+||||+|||||+++|++... + .| ..+.|+...+... .
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~--~-~g--------------~~~~~~~~~~~~~-~------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL--E-AG--------------KNAAYIDAASMPL-T------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH--T-TT--------------CCEEEEETTTSCC-C-------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH--h-cC--------------CcEEEEcHHHhhH-H-------
Confidence 467777 899999999999999999999998543 2 35 0123333322110 0
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
+++.+|++|++|||++ +|...
T Consensus 79 ----------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~ 99 (149)
T 2kjq_A 79 ----------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEE 99 (149)
T ss_dssp ----------------------------------------------------------GGGGGCSEEEEESTTC-CCSHH
T ss_pred ----------------------------------------------------------HHHhCCCEEEEeCccc-cChHH
Confidence 1246799999999998 66555
Q ss_pred HHHHHHHHHHHHHCCCE-EEEEeCCCCc
Q 006571 331 ALRIVQMLQDIAEAGKT-VVTTIHQPSS 357 (640)
Q Consensus 331 ~~~i~~~L~~l~~~g~T-vI~~tH~~~~ 357 (640)
+..+.+.+.++.++|++ +|+++|.+..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 88999999998877888 8899997543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-14 Score=153.55 Aligned_cols=168 Identities=15% Similarity=0.167 Sum_probs=97.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 173 LNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 173 L~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
-++++++++.|+.++|+|+|||||||||++|+|.. + .+.+.+.. .+...+++|.+++. ..+++.|+.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~--~------~i~~~~ft-Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH--P------KIAPYPFT-TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC--C------EECCCTTC-SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC--c------cccCcccc-eecceeeEEEecCc--ceEEEEecccc
Confidence 48999999999999999999999999999999842 1 23333322 12334566665430 01111111100
Q ss_pred HHhccCCCCccHHHHH--HHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 253 AALLRLPNTLTKQQKE--KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~--~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
.........+.....+ ++++.++..+++. ...+..||+|++||+.+|++|+.+|.||++ +.+|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls--------~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA--------DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--------SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--------cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000011111100 1111222223332 123467999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HCCCEEEEEeCCCCcHHHhccC
Q 006571 331 ALRIVQMLQDIA-EAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 331 ~~~i~~~L~~l~-~~g~TvI~~tH~~~~~i~~~~D 364 (640)
+ ..++.+++.. +.+.+++.+|..-...+.++++
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~ 317 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKE 317 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHH
Confidence 6 4555555544 4577777665433333444444
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1e-15 Score=166.97 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=94.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hccCcEEEEc-----
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SLKSKIGFVT----- 235 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~~~~i~yV~----- 235 (640)
...+|+++ + .++|++++|+|||||||||||++|+|.+. +.+|+|.+.|.++.. ..++++++.+
T Consensus 155 ~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 155 NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 45688888 5 38999999999999999999999999653 347999999987631 1234566655
Q ss_pred ----cCCCC--CCC----CCHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH
Q 006571 236 ----QDDVL--FPH----LTVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV 304 (640)
Q Consensus 236 ----Q~~~l--~~~----lTV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv 304 (640)
|++.+ ++. .|+.+++.++...... ..+......+ +.+.+..+|+.+.. .+..|||||+||
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~-------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL-------ISSSLLGVLAQR- 301 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH-------HHHHEEEEEEEE-
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH-------HHHHHHHHHHHH-
Confidence 88765 343 5899999876421100 0000000111 22346677886542 235799999999
Q ss_pred HHHHHHhhCCCEEEE
Q 006571 305 CIGNEIIINPSLLFL 319 (640)
Q Consensus 305 ~IA~aL~~~P~iLlL 319 (640)
|||+|+.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-12 Score=136.36 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=75.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCcc
Q 006571 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT 263 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~ 263 (640)
+.|.||||+|||||+++|++.+.. +..|.|.++|.+... ..+..+++++|.+.+.-..+ + .+ ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~-------~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG-PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D---MG-------NND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC-TTCCC------------------CCEECSSEEEECCC----------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC-CCCCeEEecceeecccccccceeeeecccceEEecHh--h---cC-------Ccc
Confidence 899999999999999999984443 347999999987642 22456889998765421111 0 00 001
Q ss_pred HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 264 KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 264 ~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
. ..+.+.++.+......+.. . .+|| +..+|+++|+|||++ ||+.++..+.+.|.+..
T Consensus 106 ~----~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~- 162 (354)
T 1sxj_E 106 R----IVIQELLKEVAQMEQVDFQ-----D-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS- 162 (354)
T ss_dssp H----HHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-
T ss_pred h----HHHHHHHHHHHHhcccccc-----c-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-
Confidence 1 1233344433211111111 1 3566 788999999999999 99999999999998764
Q ss_pred CCCEEEEEeCCCCc
Q 006571 344 AGKTVVTTIHQPSS 357 (640)
Q Consensus 344 ~g~TvI~~tH~~~~ 357 (640)
.+.++|+++|++..
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 37899999999764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-13 Score=142.06 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=81.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCChh---cc-CcEEEEccCCCCC-----CCCCHH
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---LK-SKIGFVTQDDVLF-----PHLTVK 247 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~---~G~~~~~~---~~-~~i~yV~Q~~~l~-----~~lTV~ 247 (640)
+.+|++++|+||||||||||+|+|+ ... +.+|+|.+ +|++++.. .+ +.+|||+|+|.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 4569999999999999999999999 653 45899999 99887532 22 3689999998653 67899
Q ss_pred HHH--HHHH----hccCCCCccHHHHHHHHHHHHHHcCCCc-cccccccCccCCcCCHHHHHHHHHHHH
Q 006571 248 ETL--TYAA----LLRLPNTLTKQQKEKRAIDVINELGLER-CQDTMIGGSFVRGVSGGERKRVCIGNE 309 (640)
Q Consensus 248 Enl--~~~~----~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg~~~~~~LSGGqrqRv~IA~a 309 (640)
||+ .|+. .++........+...++.++++.++|.+ ..+. +++.|||.++|++.|||+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKS-----YLKIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHH-----HHHHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH-----HHHHHHHHHHHHHHHhcc
Confidence 888 4431 0111111112233456889999999975 4444 346899988999999873
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-11 Score=133.50 Aligned_cols=62 Identities=19% Similarity=0.196 Sum_probs=46.5
Q ss_pred hCCCEEEEeCCCCCCCHHHH------------HHHHHHHHHHHHC-CCEEEEEeCCCC------------------cHHH
Q 006571 312 INPSLLFLDEPTSGLDSTTA------------LRIVQMLQDIAEA-GKTVVTTIHQPS------------------SRLF 360 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~------------~~i~~~L~~l~~~-g~TvI~~tH~~~------------------~~i~ 360 (640)
.+|+++++||||+.+|+... .++++.|++++++ |.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 6788888888765 999999999821 2345
Q ss_pred hccCEEEEEcCCe
Q 006571 361 HKFDKLILLGKGS 373 (640)
Q Consensus 361 ~~~D~i~vL~~G~ 373 (640)
..+|.+++|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 6689999998764
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.6e-14 Score=138.99 Aligned_cols=165 Identities=19% Similarity=0.152 Sum_probs=94.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
.++|++++|+||||||||||+++|+|.+. + . | ..+++|++++..++. +..+++........+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-~-~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-A-Q-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-H-T-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-h-c-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCC
Confidence 57999999999999999999999999653 1 1 3 235666666655532 233332110000011
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG-NEIIINPSLLFLDEPTSGLDSTTALRIVQML 338 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA-~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L 338 (640)
..... ..+.+.+..+...+..+..+.+. ...+|+||+||++++ ++++.++.++++|||.-
T Consensus 81 ~~~~~----~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-------------- 141 (208)
T 3c8u_A 81 ETFDF----EGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-------------- 141 (208)
T ss_dssp GGBCH----HHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------
T ss_pred chhhH----HHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCchh--------------
Confidence 11111 22233343332122223333332 235899999999998 78888888888888731
Q ss_pred HHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHHHHH
Q 006571 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFS 388 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~~f~ 388 (640)
.++.+.--.+|++.+.....+.+.+.|. +..|+ +.+++.+.+.
T Consensus 142 ~~l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 142 RDLTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 1111222367777777554455666662 34564 6677766554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-15 Score=149.28 Aligned_cols=152 Identities=21% Similarity=0.253 Sum_probs=87.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcccEEEECCEeCC----hhccCcEEEEccCCCCCCCCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLME-----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLT 245 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~-----------~~~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lT 245 (640)
++|++++|+||||||||||+++|+|.... ++..|+ ++|.++. ..+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 58999999999999999999999985320 123455 3555432 1233332 4544444 234
Q ss_pred HHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 006571 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERK----RVCIGN-EIIINPSLLFLD 320 (640)
Q Consensus 246 V~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrq----Rv~IA~-aL~~~P~iLlLD 320 (640)
+.+|+ |+ .+.+ .++++++. +.....+. .+ .|-++ ++ +++ +++.+|++++||
T Consensus 76 ~~~n~-~g--------~~~~----~i~~~~~~-~~~~~~~~--------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-YG--------TSKE----AVRAVQAM-NRICVLDV--------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-EE--------EEHH----HHHHHHHT-TCEEEEEC--------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-CC--------CCHH----HHHHHHHc-CCcEEEEC--------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 54444 22 1222 23333332 10000010 00 01111 12 455 678888888999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 321 EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 321 EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
|+|+++|..+...|.+.|.+..+. +.+.|. . ..||+|+++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~--~---~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKE--P---GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGS--T---TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhc--c---CCceEEEECCC
Confidence 999999999999999999887653 244562 1 56899988864
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-14 Score=161.32 Aligned_cols=176 Identities=16% Similarity=0.116 Sum_probs=108.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe-CChhccCcEEEEccCCCCCCCCCHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP-YSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~-~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
..+++++++.+++|+.++|+|||||||||||++|+|.+. +..|.|+++|.+ +.......++++.|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 458899999999999999999999999999999999653 458999999865 32122345677776544222345555
Q ss_pred HHHHHHhccCC-----CCccHHHHHH------------------HHHHHHHHcCC-----Cc----cccccccCccCCcC
Q 006571 249 TLTYAALLRLP-----NTLTKQQKEK------------------RAIDVINELGL-----ER----CQDTMIGGSFVRGV 296 (640)
Q Consensus 249 nl~~~~~~~~~-----~~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~t~vg~~~~~~L 296 (640)
++....+.+ | ..+...+... .+.++++.+.. +. ..+..+ .....+
T Consensus 325 ~l~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~ 401 (511)
T 2oap_1 325 LLRAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWV 401 (511)
T ss_dssp HHHTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEE
T ss_pred HHHHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEE
Confidence 554333221 1 0111111000 12233333322 11 011000 112358
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE--EeCCCCcHHHhcc
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVT--TIHQPSSRLFHKF 363 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~--~tH~~~~~i~~~~ 363 (640)
|||||||.+++. + | |+|||+.....+++.|.++.+.++|+++ ++|++. ++...|
T Consensus 402 s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~ 457 (511)
T 2oap_1 402 RGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFL 457 (511)
T ss_dssp SSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHH
T ss_pred eCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHc
Confidence 999999987651 2 7 9999998877777777666556888875 888864 344444
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.9e-14 Score=149.82 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=117.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCC----------CCCcccEEEECCEeCCh-----hccCcE---EEEccCCCC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLM----------EPTVGGSITYNDHPYSK-----SLKSKI---GFVTQDDVL 240 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~----------~~~~~G~I~~~G~~~~~-----~~~~~i---~yV~Q~~~l 240 (640)
.+++|..++|+|+||||||||+|+|+|... ..+..|.|.++|..+.. ..++.+ .++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999321 12457999998854321 112223 477788888
Q ss_pred CCCCCHHHHH--HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC--CE
Q 006571 241 FPHLTVKETL--TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP--SL 316 (640)
Q Consensus 241 ~~~lTV~Enl--~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P--~i 316 (640)
++..+..|++ .|...++. ++.++..++..+ +..+..++|+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~-------d~~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD-------DAEIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC-------TTCSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc-------cceeeeecccc------------Ccchhh
Confidence 8877776655 33322221 001111111111 12233466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCCEEEEEeCCCCcHHHhccCEEE-EEcCC-eEEEecChH
Q 006571 317 LFLDEPTSGLDSTTALRIVQMLQDI-AEAGKTVVTTIHQPSSRLFHKFDKLI-LLGKG-SLLYFGKAS 381 (640)
Q Consensus 317 LlLDEPTsgLD~~s~~~i~~~L~~l-~~~g~TvI~~tH~~~~~i~~~~D~i~-vL~~G-~iv~~G~~~ 381 (640)
+++|||+.++|+....+.++.++++ .+.|.|++ +|... .+.++||++. +|++| ++++.|+.+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCC
Confidence 9999999999999999999999988 66677764 99854 5788999999 99999 988877653
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-14 Score=147.04 Aligned_cols=142 Identities=15% Similarity=0.178 Sum_probs=98.4
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCC-CCCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDD-VLFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~-~l~~~ 243 (640)
...+++++++.+++| ++|+||||||||||+++|+|... .|.|.++|.++.. ...+.+++++|+. ...|.
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 456899999999999 99999999999999999999542 2789999987642 2345678888874 55666
Q ss_pred CCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 244 LTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
+++.|++......+ . .. .. . .+.+..+. ....|||||+||+.|++++..+|++| |||+
T Consensus 106 i~~~Deid~~~~~r---~----~~--~~----~--~~~~~~~~-----~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 106 VIFFDEVDALCPRR---S----DR--ET----G--ASVRVVNQ-----LLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp EEEEETCTTTCC------------------------CTTHHHH-----HHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred eEeeehhhhhhccc---C----CC--cc----h--HHHHHHHH-----HHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 77777776432111 0 00 00 0 01222222 23579999999999999999999975 9886
Q ss_pred C------------CCCHHHHHHHHHHH
Q 006571 324 S------------GLDSTTALRIVQML 338 (640)
Q Consensus 324 s------------gLD~~s~~~i~~~L 338 (640)
. -.|...+.+|++.+
T Consensus 164 ~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 164 LRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred cCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 4 23666666666543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-13 Score=141.18 Aligned_cols=151 Identities=21% Similarity=0.222 Sum_probs=97.9
Q ss_pred cccceeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHHcCCCC--CCcccEEEECCEeCCh---hc-cCcEEEEc
Q 006571 169 EKDILNGITGSVNPG-------EVLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSK---SL-KSKIGFVT 235 (640)
Q Consensus 169 ~~~iL~~vs~~i~~G-------e~~aIvGpsGsGKSTLl~~L~G~~~~--~~~~G~I~~~G~~~~~---~~-~~~i~yV~ 235 (640)
.+.+++++++.+++| +.++|.||||+|||||+++|+|.+.. .+.+|.+..++.++.. .. +..|.|++
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456899999999887 89999999999999999999986521 1245666666555432 12 45799999
Q ss_pred cCCCCCCCCCHHHHHHHHHhccCCCC-ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCC
Q 006571 236 QDDVLFPHLTVKETLTYAALLRLPNT-LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINP 314 (640)
Q Consensus 236 Q~~~l~~~lTV~Enl~~~~~~~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P 314 (640)
|.+.+.+ ++.|++..........- .......+.+...+..++|.. .++. +..||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 9888775 78888864433211000 001112233444444444433 3332 357999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 315 SLLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 315 ~iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
.+||+.+..++.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 78888889999999998875
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-11 Score=127.94 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=67.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCCh--hc-cCcEEEEccCCCCCC----CCCHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSK--SL-KSKIGFVTQDDVLFP----HLTVK 247 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~---~G~~~~~--~~-~~~i~yV~Q~~~l~~----~lTV~ 247 (640)
+++.+|++++|+||||+|||||+|+|+|... +..|+|.+ +|+..+. .+ +..++|++|.|.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 4567899999999999999999999999653 45899999 8877643 22 222799999987765 6899
Q ss_pred HHHH--HHH------hccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 248 ETLT--YAA------LLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 248 Enl~--~~~------~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
|+|. |.. .++........+...++.++++.++|.+..... ...++.|++||
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~-----y~~lls~~~~~ 303 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDH-----YVEFMTEIKDR 303 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHH-----HHHHHHHHhhc
Confidence 8883 331 112111111122345688899999997643221 13577777763
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.8e-11 Score=122.07 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=45.2
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCCEEEEEeCCCCcH-------HHhccCEEEEEcC
Q 006571 312 INPSLLFLDEPTSGL--DSTTALRIVQMLQDIA-EAGKTVVTTIHQPSSR-------LFHKFDKLILLGK 371 (640)
Q Consensus 312 ~~P~iLlLDEPTsgL--D~~s~~~i~~~L~~l~-~~g~TvI~~tH~~~~~-------i~~~~D~i~vL~~ 371 (640)
.+|+++++|+|+..+ |+....+++..|.+++ +.|.|||+++|..... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655556666666665 5689999999986531 4577899999975
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.5e-11 Score=123.51 Aligned_cols=107 Identities=15% Similarity=0.192 Sum_probs=69.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEE---CCEeCChh---c-cCcEEEEccCCC-----------
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITY---NDHPYSKS---L-KSKIGFVTQDDV----------- 239 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~---~G~~~~~~---~-~~~i~yV~Q~~~----------- 239 (640)
+++.+|++++|+||||||||||+|+|+|... +.+|+|.+ +|+++... . .+.+|||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 3456799999999999999999999999653 45899999 89887531 2 246899999974
Q ss_pred -----CCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCC-ccccccccCccCCcCCH
Q 006571 240 -----LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLE-RCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 240 -----l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~t~vg~~~~~~LSG 298 (640)
+||.+|+ ||+.|+. +. . ..+...++.++++.+||+ +..+. +++.||+
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~-~~-~----~~e~~~~v~~~l~~~~L~~~~~~~-----~~~~lse 294 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSD-CN-H----VDEPECGVKEAVENGEIAESRYEN-----YVKMFYE 294 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTT-CC-S----SSCSSCHHHHHHHHTSSCHHHHHH-----HHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCC-Cc-C----CCCCCcHHHHHHHcCCCCHHHHHH-----HHHHHHH
Confidence 5889999 9998853 11 1 112345688999999995 44443 3345664
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-10 Score=119.22 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=79.8
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHh
Q 006571 176 ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAAL 255 (640)
Q Consensus 176 vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~ 255 (640)
+++..++|++++|+|||||||||+++.|++.+. +.+|+|.+.+.|..+. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~------------------~a~eq------ 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA------------------AAIEQ------ 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH------------------HHHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH------------------HHHHH------
Confidence 455567899999999999999999999998653 3467787776654210 01111
Q ss_pred ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 256 LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV---CIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 256 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv---~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
+..+.+.++++. ....|||+.+++ +|++++..+|+++|+|||.. .....
T Consensus 151 ---------------L~~~~~~~gl~~----------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~ 202 (306)
T 1vma_A 151 ---------------LKIWGERVGATV----------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKK 202 (306)
T ss_dssp ---------------HHHHHHHHTCEE----------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHH
T ss_pred ---------------HHHHHHHcCCcE----------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHH
Confidence 223344556542 135789999999 99999999999999999974 34445
Q ss_pred HHHHHHHHHH
Q 006571 333 RIVQMLQDIA 342 (640)
Q Consensus 333 ~i~~~L~~l~ 342 (640)
.+++.|+++.
T Consensus 203 ~l~~eL~~l~ 212 (306)
T 1vma_A 203 NLMEELRKVH 212 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-11 Score=126.25 Aligned_cols=98 Identities=10% Similarity=0.119 Sum_probs=79.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHHcCCCC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSV-------------------NPGEVLALMGPSGSGKTTLLNLLSGRLME 209 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i-------------------~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~ 209 (640)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+|.+..
T Consensus 37 ~i~~~~v~~~y----------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~ 106 (308)
T 1sq5_A 37 DLSLEEVAEIY----------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp TCCHHHHHHTH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred ccchHhHHHHH----------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47888998876 25899999988 99999999999999999999999995431
Q ss_pred CCcccEEEE---CCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 210 PTVGGSITY---NDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 210 ~~~~G~I~~---~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
.+.+|+|.+ ||.......++.++++ |+..+++.+|+.+++.+...++
T Consensus 107 ~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 107 WPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp STTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred CCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 135899999 9887654445668888 8777888899999998876543
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=117.69 Aligned_cols=180 Identities=12% Similarity=0.112 Sum_probs=110.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-EEEECCEeCCh-hccCc-EEEEccCCCCCCCCCH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SITYNDHPYSK-SLKSK-IGFVTQDDVLFPHLTV 246 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~I~~~G~~~~~-~~~~~-i~yV~Q~~~l~~~lTV 246 (640)
-+.|+++.+-+++|+++.|.|+||+|||||+..|++... ...| .|.+.+.+.+. .+.++ ++... ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~--~~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~ 260 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA--TKTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA 260 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH--HHSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH--HhCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH
Confidence 357889988899999999999999999999999987432 1123 33333322211 11100 00000 0000
Q ss_pred HHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEeCCCC
Q 006571 247 KETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTS 324 (640)
Q Consensus 247 ~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTs 324 (640)
+.+ +.. .+..++ ..++.+.++.++..+..- - ...++|.+|.+ +.++.++ .+|+++++|+++.
T Consensus 261 -~~l------~~g-~l~~~~-~~~~~~a~~~l~~~~l~i---~--d~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~ 324 (454)
T 2r6a_A 261 -QNL------RTG-KLTPED-WGKLTMAMGSLSNAGIYI---D--DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQL 324 (454)
T ss_dssp -HHH------HTS-CCCHHH-HHHHHHHHHHHHSSCEEE---E--CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGG
T ss_pred -HHH------hcC-CCCHHH-HHHHHHHHHHHhcCCEEE---E--CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHH
Confidence 001 001 123222 234555555554332221 1 12468999987 5667776 6899999999999
Q ss_pred CCCH--------HHHHHHHHHHHHHHHC-CCEEEEEeC---------C--CC-------cHHHhccCEEEEEcCCeE
Q 006571 325 GLDS--------TTALRIVQMLQDIAEA-GKTVVTTIH---------Q--PS-------SRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 325 gLD~--------~s~~~i~~~L~~l~~~-g~TvI~~tH---------~--~~-------~~i~~~~D~i~vL~~G~i 374 (640)
..++ ....++.+.|+.++++ +.+||+++| + |. ..+...||.|++|+.++.
T Consensus 325 ~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 325 IQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp SCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred hccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 7742 3446788888888854 899999999 2 32 136678999999987764
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-09 Score=110.67 Aligned_cols=118 Identities=16% Similarity=0.088 Sum_probs=81.7
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHH
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYA 253 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~ 253 (640)
++++++ +|++++|+|+||+||||++..|++.+. ..+|+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~~-----------------~-~ql--- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPAA-----------------R-EQL--- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHHH-----------------H-HHH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHhH-----------------H-HHH---
Confidence 678888 999999999999999999999998653 346888887776532100 0 000
Q ss_pred HhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHH
Q 006571 254 ALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTAL 332 (640)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEP-TsgLD~~s~~ 332 (640)
..+.+..+++.... + ..-.-.+.+|.+|+++...+++++|+||| ++++|.....
T Consensus 146 ------------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~ 200 (295)
T 1ls1_A 146 ------------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMG 200 (295)
T ss_dssp ------------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHH
T ss_pred ------------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHH
Confidence 01123345542211 0 11233456789999998899999999999 9999988877
Q ss_pred HHHHHHHHH
Q 006571 333 RIVQMLQDI 341 (640)
Q Consensus 333 ~i~~~L~~l 341 (640)
.+.+..+.+
T Consensus 201 ~l~~~~~~~ 209 (295)
T 1ls1_A 201 ELARLKEVL 209 (295)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhc
Confidence 777776654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-09 Score=114.15 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=90.4
Q ss_pred ceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 172 ILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 172 iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-|+.+- +-+++|+++.|.||||+|||||+..++..... .+| .+.|+.-+..+-+ .
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~---------------~vlyi~~E~~~~~---~--- 104 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA--AGG---------------IAAFIDAEHALDP---E--- 104 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CEEEEESSCCCCH---H---
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh--CCC---------------eEEEEECCCCcCH---H---
Confidence 444443 37899999999999999999998888753221 112 2445544421110 0
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC-
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIIN--PSLLFLDEPTSGL- 326 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~--P~iLlLDEPTsgL- 326 (640)
+. +.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+
T Consensus 105 --~a----------------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 105 --YA----------------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp --HH----------------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred --HH----------------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 01 1122210 000010 11232 3345678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----HHCCCEEEEEeCCCCc---------------HHHhccCEEEEEcCCeEE
Q 006571 327 ---------DS---TTALRIVQMLQDI----AEAGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSLL 375 (640)
Q Consensus 327 ---------D~---~s~~~i~~~L~~l----~~~g~TvI~~tH~~~~---------------~i~~~~D~i~vL~~G~iv 375 (640)
|+ ..+..+.+.++++ .+.|.|||++.|.... .+...||.++.+.+++++
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 33 2223445555555 3458999999996431 245678999988887765
Q ss_pred EecC
Q 006571 376 YFGK 379 (640)
Q Consensus 376 ~~G~ 379 (640)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.9e-11 Score=131.00 Aligned_cols=165 Identities=17% Similarity=0.193 Sum_probs=99.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC-CCCCCcccEEEECCEeCCh-hccCcEEEEccCCCCCCCC--CHHHHH
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR-LMEPTVGGSITYNDHPYSK-SLKSKIGFVTQDDVLFPHL--TVKETL 250 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~-~~~~~~~G~I~~~G~~~~~-~~~~~i~yV~Q~~~l~~~l--TV~Enl 250 (640)
.+++++.++..++|.|++||||||+++.|... ++. ...|++.+.+.|... .+ +....+|++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-~~p~~v~l~liDpK~~el--------~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-AQPEDVRFIMIDPKMLEL--------SVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-CCTTTEEEEEECCSSSGG--------GGGTTCTTBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-CCCceEEEEEECCchhhh--------hhhccCCcccceeecCH
Confidence 47788889999999999999999999998752 222 224667776666432 11 110111111 122222
Q ss_pred HHHHh-ccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHH----------HHHHHHhhCCC-EEE
Q 006571 251 TYAAL-LRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRV----------CIGNEIIINPS-LLF 318 (640)
Q Consensus 251 ~~~~~-~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv----------~IA~aL~~~P~-iLl 318 (640)
..+.. ++ ...++.++| .+++...|+.+..+.. ......+||||+||. .+++++...|. +++
T Consensus 230 ~~a~~~L~----~~~~EmerR-~~ll~~~Gv~~i~~yn--~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 230 KDAANALR----WCVNEMERR-YKLMSALGVRNLAGYN--EKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHHH----HHHHHHHHH-HHHHHHTTCSSHHHHH--HHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHHH----HHHHHHHHH-HHHHHHcCCccHHHHH--HHHHHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 22111 10 112344444 3677888876543210 001135788988753 35566777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC----CCEEEEEeCCCC
Q 006571 319 LDEPTSGLDSTTALRIVQMLQDIAEA----GKTVVTTIHQPS 356 (640)
Q Consensus 319 LDEPTsgLD~~s~~~i~~~L~~l~~~----g~TvI~~tH~~~ 356 (640)
+||++.-+|.. ...+.+.|.++++. |.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 35566666666543 779999999987
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-12 Score=134.79 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=84.7
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCC-CCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~-l~~~ 243 (640)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.+++.++.. ..++.+++++|+.. ..+.
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 134 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 134 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCc
Confidence 346899999999999 89999999999999999998542 6889999876532 22345778888753 5667
Q ss_pred CCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 244 LTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
+++.|++......+... .....+..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 135 i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 135 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred EEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 78888885432211100 000111222222222 35899999999999999999875
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-09 Score=111.11 Aligned_cols=141 Identities=20% Similarity=0.196 Sum_probs=88.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPN 260 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~ 260 (640)
++|++++|+||||+||||+++.|++.+. +..| +++.++.+|+. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~----- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH--------------KKIAFITTDTY---RIAAVEQLKTYAE----- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC--------------CCEEEEECCCS---STTHHHHHHHHHT-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC--------------CEEEEEecCcc---cchHHHHHHHHHH-----
Confidence 4799999999999999999999998653 1245 35777777763 3466666654321
Q ss_pred CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006571 261 TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (640)
Q Consensus 261 ~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (640)
..|++... ..+ +..-+.+|++ +.+|+++|+| |+|+|+.....+.++.+-
T Consensus 159 ----------------~~gl~~~~----------~~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~ 207 (296)
T 2px0_A 159 ----------------LLQAPLEV----------CYT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKET 207 (296)
T ss_dssp ----------------TTTCCCCB----------CSS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHH
T ss_pred ----------------hcCCCeEe----------cCC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHH
Confidence 12332110 112 2333555554 5999999999 999998766544443332
Q ss_pred HH---HCCCEEEE-EeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 341 IA---EAGKTVVT-TIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 341 l~---~~g~TvI~-~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
+. ..+.++++ ++|.. .++.+.+|++..+..+.++..
T Consensus 208 l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 208 IPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp SCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 22 12334444 47774 356677787766677777764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.9e-10 Score=108.15 Aligned_cols=140 Identities=17% Similarity=0.142 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCC----CC-----cccEEEECCEeCCh------hccCcEEEEccCCCC-CCCCCHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLME----PT-----VGGSITYNDHPYSK------SLKSKIGFVTQDDVL-FPHLTVKE 248 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~----~~-----~~G~I~~~G~~~~~------~~~~~i~yV~Q~~~l-~~~lTV~E 248 (640)
.++|+|+||||||||++.|+|.... ++ ..|+|.++|+++.- ...+..++++|.... ...++|.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999986532 11 36899999976421 111112222221000 00011111
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHH---HHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVI---NELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l---~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
.. .. ...+.+..++ ......+..-..++++ .+|..-..+.+.+|++|+.+|+++++| ||+
T Consensus 111 ~~------------~~-~s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KH-LTYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CH-HHHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CH-HHHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 00 0000111111 1111111111112222 123332334578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 006571 326 LDSTTALRIVQMLQDI 341 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l 341 (640)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-09 Score=120.81 Aligned_cols=52 Identities=17% Similarity=0.143 Sum_probs=46.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
..+|+|+||+|++ ++++|+|||||||||||++|+|.+. +.+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEcc
Confidence 3589999999999 9999999999999999999999653 46899999998764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.1e-12 Score=130.60 Aligned_cols=124 Identities=15% Similarity=0.204 Sum_probs=83.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCC-CCCC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDV-LFPH 243 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~-l~~~ 243 (640)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ..++.+++++|+.. ..+.
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 110 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPC 110 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCe
Confidence 346899999999999 89999999999999999998542 6889999876522 22345677888743 5666
Q ss_pred CCHHHHHHHHHhccCCC-CccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE
Q 006571 244 LTVKETLTYAALLRLPN-TLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL 316 (640)
Q Consensus 244 lTV~Enl~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i 316 (640)
+++.|++......+... ....++..+.+.+++ ..|||||+||+.|++++..+|++
T Consensus 111 i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~l~g~~~~~~~i~~a~t~~p~~ 166 (254)
T 1ixz_A 111 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 166 (254)
T ss_dssp EEEEETHHHHHC---------CHHHHHHHHHHH------------------HHHHTCCTTCCEEEEEEESCGGG
T ss_pred EEEehhhhhhhcccCccccccchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEccCCchh
Confidence 78888884332211100 001111222222222 35889999999999999999986
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-10 Score=111.86 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=48.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
|+++++|++++|+||||||||||+++|+|.. + .+.+++.+... ..+..++|++|++.+|+.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL--A----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS--S----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC--C----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 5678899999999999999999999999953 2 36677765532 2345689999987776665555544
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.1e-11 Score=134.20 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=100.4
Q ss_pred ccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCC---------
Q 006571 168 EEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD--------- 238 (640)
Q Consensus 168 ~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~--------- 238 (640)
+...+++++++.+.+|+.++|+||||+|||||+++|++.+. +...|.+.+++.+... ....++++++..
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-TETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-CSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-cccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHH
Confidence 45578999999999999999999999999999999999654 3345889998877642 345688888743
Q ss_pred -------------CCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 239 -------------VLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 239 -------------~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..+..+++.+|+........+...-.. ...... +.+|.-+... ....++|+|++|++.
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~---~L~G~~~~~~-----~~~g~~~~g~~~~i~ 193 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAG---ALLGDVRHDP-----FQSGGLGTPAHERVE 193 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHH---HHHCEECCCC-----C----CCCCGGGGEE
T ss_pred HhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHH---hcCceEEech-----hhcCCcccccccccc
Confidence 112222222222110000000000000 000011 1122111111 111469999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~ 340 (640)
.++....++.+|||||... |++..+..+.+.|.+
T Consensus 194 ~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 194 PGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred CceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999988 899888888888764
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.63 E-value=1e-09 Score=109.93 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=48.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++|++..+ +. ++++.+ ++++|+|||||||||||++|+|.+. +.+|+|.++|.++..
T Consensus 8 ~~l~l~~~~~~~--------~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~ 69 (227)
T 1qhl_A 8 RSLTLINWNGFF--------AR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGAT 69 (227)
T ss_dssp EEEEEEEETTEE--------EE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC-----------
T ss_pred eEEEEEeeeccc--------CC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCC
Confidence 468888876543 11 456666 8999999999999999999999654 458999999987621
Q ss_pred ----------hccCcEEEEccC
Q 006571 226 ----------SLKSKIGFVTQD 237 (640)
Q Consensus 226 ----------~~~~~i~yV~Q~ 237 (640)
..+..++||+|+
T Consensus 70 ~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 70 SGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp -------CGGGBCSSEEEEEEE
T ss_pred ccccccchhhHhhcCcEEEEEe
Confidence 135679999984
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.61 E-value=7.8e-10 Score=110.20 Aligned_cols=38 Identities=32% Similarity=0.305 Sum_probs=22.9
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH-cCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS-GRL 207 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~-G~~ 207 (640)
.+..+++||++++|++++|+||||||||||+++|+ |.+
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45789999999999999999999999999999999 964
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.57 E-value=5.7e-08 Score=107.42 Aligned_cols=59 Identities=22% Similarity=0.397 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCCEEEEEeCCCC
Q 006571 298 GGERKRVCIGNEIIINPSLLFLDEP----------TSGLDSTTALRIVQMLQDIA----EAGKTVVTTIHQPS 356 (640)
Q Consensus 298 GGqrqRv~IA~aL~~~P~iLlLDEP----------TsgLD~~s~~~i~~~L~~l~----~~g~TvI~~tH~~~ 356 (640)
|++++|-.+++|....|.|||+||+ +.|.|......+.++|..+- ..+..||.+||++.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5788888899999999999999999 44677777677777777664 24678999999973
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.5e-08 Score=104.32 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=47.8
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-EECCEeCC-hhccCcEEEEccCCCCCCCCCH
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPYS-KSLKSKIGFVTQDDVLFPHLTV 246 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-~~~G~~~~-~~~~~~i~yV~Q~~~l~~~lTV 246 (640)
+-|+.+- +-+++|+++.|.||||||||||+..++.... ..+|.| ++++.... ....+++|+.+|+..+....++
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~ 124 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHG 124 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCH
Confidence 3455543 3689999999999999999999999997432 124544 55555432 2223445555555433333344
Q ss_pred HHHH
Q 006571 247 KETL 250 (640)
Q Consensus 247 ~Enl 250 (640)
.+.+
T Consensus 125 e~~l 128 (356)
T 3hr8_A 125 EQAL 128 (356)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.3e-08 Score=95.55 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 006571 304 VCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342 (640)
Q Consensus 304 v~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~ 342 (640)
...|++|+.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999999887754
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.9e-09 Score=102.14 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=44.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh---ccCcEEEEccCCCCCCCCCHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS---LKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~---~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
....++|++++|+||||||||||+++|++.+ |.+.++|.++... .+..+++++|++..++.+++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 4667899999999999999999999999843 7899998876421 12245777776544433333333
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.7e-08 Score=107.98 Aligned_cols=151 Identities=19% Similarity=0.209 Sum_probs=87.9
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHHcCCCCC---------CcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHH---H
Q 006571 182 PGEV-LALMGPSGSGKTTLLNLLSGRLMEP---------TVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVK---E 248 (640)
Q Consensus 182 ~Ge~-~aIvGpsGsGKSTLl~~L~G~~~~~---------~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~---E 248 (640)
.|-. ++|+|++|||||||+|.|+|..... +..|.|.++|.++. +....|++.+.+. ..|. .
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHH
Confidence 3444 9999999999999999999864310 34688999886541 2233455544221 1121 1
Q ss_pred HHHHHHh--c--c-CC-CCcc--HHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH----HHH-hhCCC
Q 006571 249 TLTYAAL--L--R-LP-NTLT--KQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG----NEI-IINPS 315 (640)
Q Consensus 249 nl~~~~~--~--~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA----~aL-~~~P~ 315 (640)
.+..... + . .. .... ..+..+.+.++++.+++.+..--.++++ +..+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111000 0 0 00 0111 1223344667788877654432223332 345788899988887 554 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 006571 316 LLFLDEPTSGLDSTTALRIVQMLQDIAE 343 (640)
Q Consensus 316 iLlLDEPTsgLD~~s~~~i~~~L~~l~~ 343 (640)
+ +|+|++|......+.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-10 Score=122.06 Aligned_cols=144 Identities=19% Similarity=0.193 Sum_probs=83.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCC-CCCCCCHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDV-LFPHLTVKE 248 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~-l~~~lTV~E 248 (640)
..+|+++++.+++|++++|+||||||||||+++|+|. .+|.+..-+.+- ..+...+++++|... ++++.+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~-----~~g~~~~~~~~~-~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL-----CGGKALNVNLPL-DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH-----HCCEEECCSSCT-TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh-----cCCcEEEEeccc-hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4689999999999999999999999999999999983 257776522111 111223667777653 233333221
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHH---cCCCc----ccccc----ccCccCCcCCHHHHHHHHHHHHHhhCCCEE
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINE---LGLER----CQDTM----IGGSFVRGVSGGERKRVCIGNEIIINPSLL 317 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~---lgL~~----~~~t~----vg~~~~~~LSGGqrqRv~IA~aL~~~P~iL 317 (640)
.+. .+.... ........+.+.++. +.+.. ..+.. .-+.....+++|+++|+..+.+++.+|+++
T Consensus 230 ~~~----r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLl 304 (377)
T 1svm_A 230 GES----RDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLK 304 (377)
T ss_dssp TTT----TTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHH
T ss_pred HHH----hhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeE
Confidence 110 000000 000011223333321 00110 00000 001233568999999999988888999988
Q ss_pred E-EeCCCC
Q 006571 318 F-LDEPTS 324 (640)
Q Consensus 318 l-LDEPTs 324 (640)
+ ||+|+.
T Consensus 305 iyLd~~~~ 312 (377)
T 1svm_A 305 HCLERSEF 312 (377)
T ss_dssp HHHHTCTH
T ss_pred EEEeCCHH
Confidence 7 999987
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-09 Score=101.81 Aligned_cols=56 Identities=25% Similarity=0.268 Sum_probs=45.5
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE--EECCEeCChhc
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI--TYNDHPYSKSL 227 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I--~~~G~~~~~~~ 227 (640)
.....+.+++..++|++++|+||||||||||.++|++++. ..|.+ +++|.++.+.+
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~~~~~ 68 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNVRHGL 68 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHHTTTT
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchhhhHh
Confidence 4556778888889999999999999999999999998653 35777 88887765433
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.4e-08 Score=100.36 Aligned_cols=52 Identities=33% Similarity=0.456 Sum_probs=35.8
Q ss_pred eEEEEeE-EEEEeeccccccccccceeceEEEEeC---CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 149 YLKFTDV-TYKVILKGMTSSEEKDILNGITGSVNP---GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 149 ~l~~~~v-s~~~~~~~~~~~~~~~iL~~vs~~i~~---Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.|+++|| +++|. +++++|+|+|++|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~-------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD-------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec-------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 6999999 99871 345799999999999 9999999999999999999999743
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.28 E-value=4.6e-07 Score=86.25 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.9
Q ss_pred cce--eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 171 DIL--NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 171 ~iL--~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
..+ +++++.+.+| +++|+||||||||||+++|.+.+.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence 355 7899999999 999999999999999999998654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-07 Score=96.13 Aligned_cols=130 Identities=12% Similarity=0.186 Sum_probs=84.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-+-|+.+.+-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.= .++..+.
T Consensus 33 ~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a--~-------~g--------~~Vl~fSl------Ems~~ql 89 (338)
T 4a1f_A 33 FVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL--N-------DD--------RGVAVFSL------EMSAEQL 89 (338)
T ss_dssp CHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH--H-------TT--------CEEEEEES------SSCHHHH
T ss_pred ChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH--H-------cC--------CeEEEEeC------CCCHHHH
Confidence 346777777899999999999999999999988885321 0 11 12444432 2333322
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
..++......+++.+..+ ..||.++++|+..|...+.++++++.|+|...+
T Consensus 90 ------------------~~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si--- 140 (338)
T 4a1f_A 90 ------------------ALRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI--- 140 (338)
T ss_dssp ------------------HHHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH---
T ss_pred ------------------HHHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH---
Confidence 222222222222222211 259999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHH-C-CCEEEEEeC
Q 006571 330 TALRIVQMLQDIAE-A-GKTVVTTIH 353 (640)
Q Consensus 330 s~~~i~~~L~~l~~-~-g~TvI~~tH 353 (640)
.+|...++++.+ . |..+|++-|
T Consensus 141 --~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 141 --EQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHHhcCCCCEEEEec
Confidence 366667777654 3 567777744
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-07 Score=89.78 Aligned_cols=30 Identities=30% Similarity=0.381 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|++|++++|+||||||||||+++|++.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 367899999999999999999999999965
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.8e-07 Score=98.29 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=57.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--------hc-----cCcEEEE-ccC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--------SL-----KSKIGFV-TQD 237 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--------~~-----~~~i~yV-~Q~ 237 (640)
++++++|.+++|++++|+|+||+||||++..|++.+. ..+|+|.+.+.|... .+ +..+.++ +|.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANK 171 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCC
Confidence 3478999999999999999999999999999998654 347899998887632 12 5568999 676
Q ss_pred CCCCCCCCHHHHHH
Q 006571 238 DVLFPHLTVKETLT 251 (640)
Q Consensus 238 ~~l~~~lTV~Enl~ 251 (640)
....|..++.+++.
T Consensus 172 ~~~~p~~~~~~~l~ 185 (320)
T 1zu4_A 172 LNADPASVVFDAIK 185 (320)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 55444434445444
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.23 E-value=1e-06 Score=103.02 Aligned_cols=72 Identities=13% Similarity=0.204 Sum_probs=56.6
Q ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCCCcHHHhccCE
Q 006571 293 VRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTT-IHQPSSRLFHKFDK 365 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~s~~~i~~~L~~l~~~g~TvI~~-tH~~~~~i~~~~D~ 365 (640)
+.-+|.|+.+|..+++.++.+++++++|||.. +||......+++.+.......++|+++ ||++ ..+.+++++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~-~~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDA-EKFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCC-HHHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccH-HHHHHHhcC
Confidence 44589999999999999999999999999996 999887777776666554445678875 8874 456666664
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.5e-08 Score=97.11 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=47.1
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH---cCCCCCCcccEEE--------ECCEeCCh-----hccCcEEEE
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS---GRLMEPTVGGSIT--------YNDHPYSK-----SLKSKIGFV 234 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~---G~~~~~~~~G~I~--------~~G~~~~~-----~~~~~i~yV 234 (640)
.++++.+ ++|++++|+|||||||||++++|+ |... +++|.|. .+|.++.. .+++.++++
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 3555544 789999999999999999999999 7432 4689998 88887732 456789999
Q ss_pred ccCC
Q 006571 235 TQDD 238 (640)
Q Consensus 235 ~Q~~ 238 (640)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 9754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.5e-07 Score=87.42 Aligned_cols=43 Identities=28% Similarity=0.169 Sum_probs=24.5
Q ss_pred cccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 165 ~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.+...+++||||++++|++++|+||+||||||+.+.|++.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 7 HSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3455678999999999999999999999999999999999743
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-09 Score=116.22 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=85.3
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChh----ccCcEEEEccCCC-CCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKS----LKSKIGFVTQDDV-LFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~----~~~~i~yV~Q~~~-l~~~l 244 (640)
..+++++++.+++| +.|+||||+|||||+++|++... .+.|.++|.++... ..+++..++|+.. ..|.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~i 126 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 126 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCE
Confidence 45789999999999 89999999999999999998542 57899998776421 1234556676643 34555
Q ss_pred CHHHHHHHHHhccCC-CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 006571 245 TVKETLTYAALLRLP-NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323 (640)
Q Consensus 245 TV~Enl~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT 323 (640)
.+.|++......+.. .....++....+.+++. .|||||+|+..|+++...+|++ |||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 556666322111100 00012223333333332 4788888998899999999987 88887
Q ss_pred C
Q 006571 324 S 324 (640)
Q Consensus 324 s 324 (640)
-
T Consensus 187 l 187 (499)
T 2dhr_A 187 L 187 (499)
T ss_dssp S
T ss_pred c
Confidence 5
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.3e-07 Score=89.16 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=71.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccH
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTK 264 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~ 264 (640)
+++|+|||||||||+.++|++ + |...+++.++.+... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l------g~~~id~d~~~~~~~-------~-----~~-----------------~--- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L------GVPLVDADVVAREVV-------A-----KD-----------------S--- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T------TCCEEEHHHHHHHTT-------C-----SS-----------------C---
T ss_pred EEEEECCCCCCHHHHHHHHHH-C------CCcccchHHHHHHHc-------c-----CC-----------------h---
Confidence 689999999999999999997 2 333344322110000 0 00 0
Q ss_pred HHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 006571 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA 344 (640)
Q Consensus 265 ~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~ 344 (640)
..+.++.+.+|... -.+.|+.+|..++..+..+|+.+.++ .+.++|.....+.+.++.. .
T Consensus 45 ----~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~ 104 (206)
T 1jjv_A 45 ----PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--T 104 (206)
T ss_dssp ----HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--C
T ss_pred ----HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--C
Confidence 11334445555421 13678889999998888887654333 3345566555555444322 3
Q ss_pred CCEEEEEeCCCCcH-HHhccCEEEEEc
Q 006571 345 GKTVVTTIHQPSSR-LFHKFDKLILLG 370 (640)
Q Consensus 345 g~TvI~~tH~~~~~-i~~~~D~i~vL~ 370 (640)
+.++|+.+|.+... +...||.+++++
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 56888888876432 246788888774
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7e-06 Score=87.22 Aligned_cols=159 Identities=16% Similarity=0.169 Sum_probs=82.4
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC----hhccCcEEEEccCCC-CCCCC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS----KSLKSKIGFVTQDDV-LFPHL 244 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~-l~~~l 244 (640)
..+|++++++++ .++|+|++|||||||++.|.|....|...|.++-....+. ..-....+...+.+. .+.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458999999998 8999999999999999999995432344454433322211 001122333333221 11110
Q ss_pred -CHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCC----C----------------ccccccccCcc---CCcCCHHH
Q 006571 245 -TVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL----E----------------RCQDTMIGGSF---VRGVSGGE 300 (640)
Q Consensus 245 -TV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~t~vg~~~---~~~LSGGq 300 (640)
.+.+.+. .+.....|- . ...||. |-.. ....++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtP-G~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLP-GLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECC-CBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECC-CCCcCCcCCCchhHH
Confidence 1111111 011111110 0 011221 2110 11256788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG-KTVVTTIH 353 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g-~TvI~~tH 353 (640)
+++..+++..+.+|++++|.-..+..|..+ ...++.++.+...| ++|++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999777774333445443 45566666665545 47777665
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.15 E-value=2e-06 Score=91.49 Aligned_cols=62 Identities=8% Similarity=0.109 Sum_probs=49.2
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe--CCCCc
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLD-EPTSGLDSTTALRIVQMLQDIAEAGKTVVTTI--HQPSS 357 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLD-EPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~t--H~~~~ 357 (640)
..+|+||+|++. +.+...++-++++| +|+.++|......+++.+.+... ++.+|++. ||...
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVAD 294 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCC
Confidence 468999998876 55555677789999 99999999998888888776543 77888888 77543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-06 Score=94.11 Aligned_cols=96 Identities=10% Similarity=0.158 Sum_probs=61.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE-EcCCeEEEecChH--HHHHHH
Q 006571 312 INPSLLFLDEPTSGLDS-TTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL-LGKGSLLYFGKAS--EAMAYF 387 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~-~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v-L~~G~iv~~G~~~--~~~~~f 387 (640)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|++..++..+.+++.- +..|.++..++++ +..+.+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 38999999999887764 6778899999988878899999999865432223333332 4567777776653 333332
Q ss_pred ----HhcCCCCCCCCChHHHHHHhhc
Q 006571 388 ----SSIGCSPQIAMNPAEFLLDLAN 409 (640)
Q Consensus 388 ----~~~g~~~~~~~npad~~~~~~~ 409 (640)
...|...++ +..+++.....
T Consensus 273 ~~~~~~~~~~i~~--e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELPE--EVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCCT--THHHHHHHHCC
T ss_pred HHHHHHcCCCCCH--HHHHHHHHhcC
Confidence 334544332 33555555443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=9.4e-07 Score=84.51 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEEC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN 219 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~ 219 (640)
.+|++++|+||||||||||+++|++... +...|.|...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~-~~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP-DRFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT-TTEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC-ccEEEeeecc
Confidence 3689999999999999999999998542 2234555443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.01 E-value=3.1e-05 Score=81.87 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=79.8
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHH
Q 006571 173 LNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLT 251 (640)
Q Consensus 173 L~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~ 251 (640)
|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ....-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g------~~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----Y------PGGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----B------CCCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHHH
Confidence 44433 5689999999999999999999999986422121101 0 01235566544321 2222222
Q ss_pred HHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH-HHHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 006571 252 YAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII----INPSLLFLDEPTSGL 326 (640)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IA~aL~----~~P~iLlLDEPTsgL 326 (640)
+..... ... +++++.+-+. +..++. +.+.+..++.++ .+++++++|+.++-.
T Consensus 176 ~~~~~g----~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRFN----VDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHTT----CCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHcC----CCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 221111 111 1223322111 112232 234555666666 568999999999866
Q ss_pred CHH------------HHHHHHHHHHHHHH-CCCEEEEEeCCC
Q 006571 327 DST------------TALRIVQMLQDIAE-AGKTVVTTIHQP 355 (640)
Q Consensus 327 D~~------------s~~~i~~~L~~l~~-~g~TvI~~tH~~ 355 (640)
+.. ...+++..|+++++ .+.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 12455666666665 488999888853
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.4e-05 Score=84.53 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=35.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAE---AGKTVVTTIHQP 355 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~---~g~TvI~~tH~~ 355 (640)
.+|.+|++||+... |......+.+.+.++.. .+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876655 577899999986
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.1e-06 Score=98.86 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=77.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----hccCcEEEEccCCCCCCCCCHHHHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTY 252 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~----~~~~~i~yV~Q~~~l~~~lTV~Enl~~ 252 (640)
|+.+++|+.++|+|++|+|||||++.|++........|+| .+|..+.+ +.++.+++.+|...++.. ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 4567899999999999999999999999643221246777 56655432 234556666665544321 1111
Q ss_pred HHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 006571 253 AALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTAL 332 (640)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~ 332 (640)
...||. |. ..++ .......-..++.++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 112221 11 0111 112222235678889999 9999998876
Q ss_pred HHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 333 RIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 333 ~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.++ +.+.+.+.++|++.|...
T Consensus 117 ~~~---~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 RAW---TVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp HHH---HHHHHTTCCEEEEEECGG
T ss_pred HHH---HHHHHccCCEEEEecCCc
Confidence 333 333345888889988854
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=3.3e-05 Score=80.92 Aligned_cols=145 Identities=23% Similarity=0.304 Sum_probs=80.4
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
.|+.+- +-+++|+++.|.||+|+|||||+..++.....+...| | ....+.|+.-+..+ ...+-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g------~~~~vlyi~~e~~~----~~~~l~ 159 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----G------LSGKAVYIDTEGTF----RWERIE 159 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----C------CSCEEEEEESSSCC----CHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----C------CCCeEEEEECCCCC----CHHHHH
Confidence 344443 5799999999999999999999999886432221111 0 01235555544321 122111
Q ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHH-HHHHHHHHHHHh---hCCCEEEEeCCCCCC
Q 006571 251 TYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG-ERKRVCIGNEII---INPSLLFLDEPTSGL 326 (640)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGG-qrqRv~IA~aL~---~~P~iLlLDEPTsgL 326 (640)
.....+. ... +++++.+-+ .+..+.. +.+.+..++.++ .+|+++++|+.++-.
T Consensus 160 ~~~~~~g----~~~-------~~~~~~l~~------------~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 216 (324)
T 2z43_A 160 NMAKALG----LDI-------DNVMNNIYY------------IRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHF 216 (324)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHH
T ss_pred HHHHHhC----CCH-------HHHhccEEE------------EeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHh
Confidence 1111111 111 112221111 0122333 335677778887 579999999999865
Q ss_pred CH--------HH----HHHHHHHHHHHHHC-CCEEEEEeCC
Q 006571 327 DS--------TT----ALRIVQMLQDIAEA-GKTVVTTIHQ 354 (640)
Q Consensus 327 D~--------~s----~~~i~~~L~~l~~~-g~TvI~~tH~ 354 (640)
+. .. ..+++..|++++++ +.+||++.|-
T Consensus 217 ~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 217 RAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 32 11 24555666666643 8899988775
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=3e-06 Score=84.25 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=35.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
++..++|++++|.|+||||||||+++|+|. +|+|.+++.|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 344579999999999999999999999984 57898888775
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.3e-05 Score=83.76 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=84.5
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHH
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-+-|+++.+-+++|+++.|.|++|+|||||+.-++.... ..| ..+.|+.=+ ++..+.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g--------------~~vl~~slE------~s~~~l 111 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND--------------DVVNLHSLE------MGKKEN 111 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT--------------CEEEEEESS------SCHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC--------------CeEEEEECC------CCHHHH
Confidence 346788877799999999999999999999988874221 111 124555432 343332
Q ss_pred HHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 006571 250 LTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDST 329 (640)
Q Consensus 250 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~ 329 (640)
.. ++......+.+.+..+ | . ..||.++++|+..|...+.++++++.|+|...
T Consensus 112 ~~------------------R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~---- 163 (315)
T 3bh0_A 112 IK------------------RLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS---- 163 (315)
T ss_dssp HH------------------HHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB----
T ss_pred HH------------------HHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC----
Confidence 21 1111111122111111 0 0 13899999999999999999999999998643
Q ss_pred HHHHHHHHHHHHHHC-CCE--EEEEeCC
Q 006571 330 TALRIVQMLQDIAEA-GKT--VVTTIHQ 354 (640)
Q Consensus 330 s~~~i~~~L~~l~~~-g~T--vI~~tH~ 354 (640)
..++...++++.++ |.. +|++-|-
T Consensus 164 -~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 164 -VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp -HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred -HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 34566667776654 666 7777653
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.83 E-value=7.1e-05 Score=76.63 Aligned_cols=73 Identities=18% Similarity=0.324 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCCEEEEEeCCC---CcHH
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDST----------TALRIVQMLQDIAE----AGKTVVTTIHQP---SSRL 359 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~----------s~~~i~~~L~~l~~----~g~TvI~~tH~~---~~~i 359 (640)
+++++.|..++.+...+|.+|++||+.+-++.. ....++..+..... .+..||.+++++ ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 356777778888888899999999998776532 22234444433211 234677788874 3334
Q ss_pred HhccCEEEEE
Q 006571 360 FHKFDKLILL 369 (640)
Q Consensus 360 ~~~~D~i~vL 369 (640)
.+.||+++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456665444
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.83 E-value=1.2e-05 Score=83.60 Aligned_cols=63 Identities=13% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-CC--EEEEEeCCCCcHHHhccCEE
Q 006571 296 VSGGERKRVCIGNEII--INPSLLFLDEPTSGLDSTT-ALRIVQMLQDIAEA-GK--TVVTTIHQPSSRLFHKFDKL 366 (640)
Q Consensus 296 LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgLD~~s-~~~i~~~L~~l~~~-g~--TvI~~tH~~~~~i~~~~D~i 366 (640)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.++++++. |. .+.+++|+-. .+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 898886 5566666 68999998 7888876 66777888888753 43 5566666633 344444443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.82 E-value=6e-06 Score=80.77 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|++++|+||||||||||++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999999999865
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=1.5e-05 Score=77.41 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=36.7
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (640)
--++++|++++|+|+||||||||.+.|++.+. .+.+++||+.+++.
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~---------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP---------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST---------------------TEEEEEGGGGBCCG
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC---------------------CcEEEeCCccccCH
Confidence 34567899999999999999999999997431 26778888776653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=8.1e-06 Score=76.95 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
.+|++++|+|||||||||++++|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999999742 6778877654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.68 E-value=6.9e-05 Score=81.70 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
++.+++++||+|+||||++..|++.+. ..+++|.+-+.|. + .....|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~--~~G~kVllv~~D~-----------------~-r~~a~eqL~~--------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK--KRGYKVGLVAADV-----------------Y-RPAAYDQLLQ--------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECC-----------------S-CHHHHHHHHH---------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEecCc-----------------c-chhHHHHHHH---------
Confidence 678999999999999999999997553 2345555443331 1 0011222221
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHH
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT-SG--LDSTTALRIVQML 338 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPT-sg--LD~~s~~~i~~~L 338 (640)
.-+..|++-.... .+..--.--+-+++.+...+++++|+|+|- .+ .|+....++.+.+
T Consensus 147 ------------~~~~~gv~~~~~~-------~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~ 207 (433)
T 3kl4_A 147 ------------LGNQIGVQVYGEP-------NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMY 207 (433)
T ss_dssp ------------HHHTTTCCEECCT-------TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHH
T ss_pred ------------HHHhcCCceeecc-------ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHH
Confidence 1222333211100 011111122234555555689999999997 34 7877766666655
Q ss_pred HHHHHCCCEEEEEeCC
Q 006571 339 QDIAEAGKTVVTTIHQ 354 (640)
Q Consensus 339 ~~l~~~g~TvI~~tH~ 354 (640)
+.+......+++.+|.
T Consensus 208 ~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 208 DVLKPDDVILVIDASI 223 (433)
T ss_dssp HHHCCSEEEEEEEGGG
T ss_pred HhhCCcceEEEEeCcc
Confidence 5443334444555554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.5e-05 Score=77.83 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+|++++|+||||||||||++.|.+..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 33589999999999999999999999854
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.62 E-value=4e-06 Score=88.07 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=44.0
Q ss_pred cccceeceEEEEeCCe------EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCC
Q 006571 169 EKDILNGITGSVNPGE------VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge------~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~ 242 (640)
.+..|++++..+..++ ++||+||||||||||+++|.+.+...+.+| .++++.+|+...+
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~---------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP---------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC---------------CEEEEEGGGGBCC
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC---------------eEEEEeecccccc
Confidence 4567888888888777 999999999999999999998653211222 3667777766554
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.62 E-value=1e-05 Score=78.67 Aligned_cols=41 Identities=39% Similarity=0.297 Sum_probs=33.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
.++|++++|+|+||||||||++.|++.+. +.+|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 57899999999999999999999998552 236777665544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=4.2e-06 Score=82.19 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=41.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEE--------CCEeCCh-----hccCcEEEEccCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITY--------NDHPYSK-----SLKSKIGFVTQDD 238 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~--------~G~~~~~-----~~~~~i~yV~Q~~ 238 (640)
+.+++|+|||||||||+.++|++.+.- ..+.|++.. +|.++.. .+++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 568999999999999999999975311 135687776 6766542 3567788888864
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.55 E-value=7.9e-06 Score=91.91 Aligned_cols=43 Identities=35% Similarity=0.539 Sum_probs=35.4
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc-EEE-ECCEeC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG-SIT-YNDHPY 223 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G-~I~-~~G~~~ 223 (640)
.+++|++++|+|+||||||||+++|+|++. +.+| +|. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~--~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM--EMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH--TTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc--ccCCceEEEECCcHH
Confidence 578999999999999999999999999764 2344 674 888654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=78.01 Aligned_cols=171 Identities=15% Similarity=0.216 Sum_probs=95.6
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHH
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETL 250 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl 250 (640)
+-|+.+.+-+++|+++.|.|++|+|||||..-++.... ...| ..+.|+.=+ ++..+..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a--~~~g--------------~~vl~~slE------~~~~~l~ 245 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA--LKEG--------------VGVGIYSLE------MPAAQLT 245 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH--HTTC--------------CCEEEEESS------SCHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCC--------------CeEEEEECC------CCHHHHH
Confidence 46777777799999999999999999999988885321 0011 123333321 2222211
Q ss_pred HH--HHhccCC------CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEe
Q 006571 251 TY--AALLRLP------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLD 320 (640)
Q Consensus 251 ~~--~~~~~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLD 320 (640)
.- ......+ ..++.++ ..++.+.++.+.-.+.. +-+ ..++|..+- .+.++.+. .+|+++++|
T Consensus 246 ~R~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l~---i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID 317 (444)
T 2q6t_A 246 LRMMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPIY---IDD--TPDLTLMEV--RARARRLVSQNQVGLIIID 317 (444)
T ss_dssp HHHHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCEE---EEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCEE---EEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEc
Confidence 10 0000000 0122322 22333344333211111 111 134676664 34556665 479999999
Q ss_pred CCCCCCCH----------HHHHHHHHHHHHHHHC-CCEEEEEeCC-----------CC-------cHHHhccCEEEEEcC
Q 006571 321 EPTSGLDS----------TTALRIVQMLQDIAEA-GKTVVTTIHQ-----------PS-------SRLFHKFDKLILLGK 371 (640)
Q Consensus 321 EPTsgLD~----------~s~~~i~~~L~~l~~~-g~TvI~~tH~-----------~~-------~~i~~~~D~i~vL~~ 371 (640)
..+.-.+. .....+.+.|+.++++ +.+||+++|- |. ..+.+.||.|++|+.
T Consensus 318 ~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 318 YLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp CGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred ChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 98764432 1224677888888764 8899999883 11 024567899988864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=1.1e-05 Score=76.48 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=31.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc--EEEECCEeCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHPYS 224 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G--~I~~~G~~~~ 224 (640)
++|++++|+|++||||||+.+.|++.+. + .| .|.+++..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~--~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV--C-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH--H-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh--h-CCCcEEEECChHHH
Confidence 4799999999999999999999998542 1 35 5666765543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00013 Score=75.32 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.4
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.+.++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788999999999999999999999743
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=2.5e-05 Score=77.74 Aligned_cols=153 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
+..|+.++|.||+||||||++.++..... ...| ....++.+.+.|......++.+++.........
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~--~~~~------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~ 138 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF--IQND------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG 138 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH--HHTT------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch--hhcC------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC
Confidence 35789999999999999999887763110 0011 012355666665443334455555422110000
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccc--cCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMI--GGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS-GLDSTTALRIVQ 336 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~v--g~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTs-gLD~~s~~~i~~ 336 (640)
. ..|.....+... .+..+--.+.|.-.+.. ...+.+-+++++||.-. ++|.......++
T Consensus 139 ~----------------~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 139 K----------------SCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp S----------------SEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred c----------------eEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 000000000000 00001113456655553 33578999999999976 677776544554
Q ss_pred HHHHHHHCCCEEEEEeCCCCcHHHhccC
Q 006571 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFD 364 (640)
Q Consensus 337 ~L~~l~~~g~TvI~~tH~~~~~i~~~~D 364 (640)
.+......-++++++.--+...+.++++
T Consensus 201 ~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 201 DVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 4444333334666665544443444443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.46 E-value=3.5e-05 Score=81.01 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++..+.|.||+|+|||||++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999743
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.4e-05 Score=69.84 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=25.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.++++.+| +++|+|||||||||++++|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3455666665 999999999999999999973
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.44 E-value=4.4e-05 Score=71.51 Aligned_cols=26 Identities=35% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.|++++|+||||||||||+++|++.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999999854
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.43 E-value=1.3e-05 Score=85.74 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=44.8
Q ss_pred eEEEEeEEEEEeecccccccccccee--------------ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILN--------------GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~--------------~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|+||++.|+ .++.+|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP-------~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHA-------NSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESC-------CSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCC-------CCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 578999999874 3456788 89999999999999999999999999999863
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=69.26 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=65.40 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999999854
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.26 E-value=2.3e-05 Score=82.78 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=41.3
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
.+.+++++++.+.+|.+++|+|++|+|||||++.|++.+. +.+|+|.+-+.+
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~--~~~~~v~v~~~d 93 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI--REGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH--HTTCCEEEEEEC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEeec
Confidence 3568899999999999999999999999999999998543 234555554443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00026 Score=77.22 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=39.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC----------CCcccEEEECCEeCC----hhccCcEEEEccCCCCCCCCCHHHH
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLME----------PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKET 249 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~----------~~~~G~I~~~G~~~~----~~~~~~i~yV~Q~~~l~~~lTV~En 249 (640)
-.++|+|+||+|||||+|.|+|.... .+..|.+.++|+++. ...++..++.+|....|..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 37999999999999999999986420 134689999998642 2234444555555555554445555
Q ss_pred HHH
Q 006571 250 LTY 252 (640)
Q Consensus 250 l~~ 252 (640)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00083 Score=71.39 Aligned_cols=35 Identities=31% Similarity=0.422 Sum_probs=28.7
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+.+- +-+++|+++.|.|++|+|||||...++.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3455543 3589999999999999999999988875
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00015 Score=78.78 Aligned_cols=30 Identities=27% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++.+|++++|+|||||||||||++|++.+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 456789999999999999999999999855
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00011 Score=73.14 Aligned_cols=37 Identities=32% Similarity=0.413 Sum_probs=26.5
Q ss_pred ceeceEEEEe---CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 172 ILNGITGSVN---PGEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 172 iL~~vs~~i~---~Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
=|.++|+++. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 999999999999999999999998653
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00025 Score=69.26 Aligned_cols=45 Identities=11% Similarity=0.164 Sum_probs=31.5
Q ss_pred hCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHHCCCE-EEEEeCCCC
Q 006571 312 INPSLLFLDEPTSGL-DSTTALRIVQMLQDIAEAGKT-VVTTIHQPS 356 (640)
Q Consensus 312 ~~P~iLlLDEPTsgL-D~~s~~~i~~~L~~l~~~g~T-vI~~tH~~~ 356 (640)
.+|.+|++||.-.-- +......+.+.+....+.++. +|++++...
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 568999999965432 233367788888887766665 788877643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.001 Score=69.03 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=34.9
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 311 IINPSLLFLDEPTS-GLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 311 ~~~P~iLlLDEPTs-gLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
..+|++|++||+-. ..|...+..+...+..+.+.++.+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45799999999866 2344778889999988877777788887754
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.11 E-value=7.1e-05 Score=84.05 Aligned_cols=50 Identities=28% Similarity=0.336 Sum_probs=39.8
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
..+++++++.+ +|+.++|+||||+|||||+++|++.+. ...|.|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 45778888888 899999999999999999999998653 336777777643
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00058 Score=64.03 Aligned_cols=27 Identities=37% Similarity=0.634 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00031 Score=68.52 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=25.1
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+.++.+.+| +++|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 455666665 999999999999999999974
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00067 Score=65.14 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999743
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00015 Score=76.95 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=31.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
+++.+++|+|++|||||||+|.|+|.+. +.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~--~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT--ERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh--hcCCeEEEEeecC
Confidence 5688999999999999999999998542 2356666655543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00069 Score=68.68 Aligned_cols=28 Identities=32% Similarity=0.599 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.++.-+.|.||+|+|||||++.|+..+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566779999999999999999999743
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0029 Score=65.76 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=28.3
Q ss_pred ceeceE-EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 172 ILNGIT-GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 172 iL~~vs-~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-|+.+- +-+++|+++.|.||+|+|||||...++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344443 5689999999999999999999988874
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00075 Score=73.88 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=29.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+.+.+-+.+|+++.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 45666666789999999999999999999887774
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00062 Score=64.83 Aligned_cols=35 Identities=34% Similarity=0.507 Sum_probs=20.9
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+|+++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999998888 6689999999999999999974
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00044 Score=66.95 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=25.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+|.+++|+||||||||||.+.|+..+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4688999999999999999999999754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00048 Score=65.62 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=26.2
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46888889999999999999999999999964
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0027 Score=63.05 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=41.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------CCCcHHHhccCEEEEEc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------~~~~~i~~~~D~i~vL~ 370 (640)
+|+++++||.-- |+. .+++.++.+++.|.+||++-| ..+..+..+||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 654 355666777777999999999 55567888999998875
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00028 Score=67.78 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=31.9
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-..+++++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 12 ~~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 3468999999988885 689999999999999999863
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0058 Score=64.55 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+..-+.|.||+|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45567899999999999999999964
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.004 Score=61.91 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++..-+.|.||+|+|||||.+.|+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999964
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00035 Score=68.03 Aligned_cols=43 Identities=26% Similarity=0.211 Sum_probs=33.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCccc--EEEECCEe
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG--SITYNDHP 222 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G--~I~~~G~~ 222 (640)
..+++|.+++|+|++||||||+.+.|++.+. +..| .+.++|..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECChH
Confidence 3457899999999999999999999998542 2356 67777544
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00013 Score=77.83 Aligned_cols=46 Identities=33% Similarity=0.530 Sum_probs=33.8
Q ss_pred CeeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 147 PIYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 147 ~~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+..+.++|++..| +.+.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 15 ~~~v~~~~l~~~~--------~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQV--------HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHH--------HTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHh--------CCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 3467777777654 3567899999987 99999999999999999874
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0016 Score=69.40 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=27.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
.+++..+++.+| +++|.|||||||||+|.+|.
T Consensus 15 ~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 15 SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346778888775 99999999999999999986
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00042 Score=75.38 Aligned_cols=47 Identities=21% Similarity=0.047 Sum_probs=39.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCC
Q 006571 174 NGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224 (640)
Q Consensus 174 ~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~ 224 (640)
+++++. +|++++++|+|||||||++..|++.+. ..+|+|.+.+.|..
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~--~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQ 137 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEEECCSS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEeecccc
Confidence 567777 899999999999999999999998654 34788888777653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00079 Score=64.76 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00067 Score=68.21 Aligned_cols=47 Identities=23% Similarity=0.390 Sum_probs=35.9
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
++++.+ ..+++.++.|+|+|||||||+.+.|+..+. .+.+.+++..+
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~----~~~~~~~~D~~ 68 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ----GNIVIIDGDSF 68 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT----TCCEEECGGGG
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC----CCcEEEecHHH
Confidence 444544 567889999999999999999999997542 24577777554
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=67.66 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+..+.|.||+|+|||||++.++..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999643
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00033 Score=74.27 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.8
Q ss_pred cceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 006571 171 DILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~--~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++++++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 588899999999998 9999999999999999999854
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0015 Score=60.50 Aligned_cols=22 Identities=41% Similarity=0.742 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|+|.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0016 Score=61.81 Aligned_cols=28 Identities=43% Similarity=0.566 Sum_probs=25.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+|.++.|+|++||||||+.+.|+..+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999999754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0016 Score=61.52 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999985
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00034 Score=72.55 Aligned_cols=47 Identities=21% Similarity=0.147 Sum_probs=36.5
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeC
Q 006571 174 NG-ITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223 (640)
Q Consensus 174 ~~-vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~ 223 (640)
++ ++++.+ |++++++|++|+||||++..|++.+. ..+|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 45 777766 99999999999999999999998653 2356777665554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0015 Score=62.81 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999974
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.00041 Score=72.64 Aligned_cols=39 Identities=26% Similarity=0.605 Sum_probs=35.1
Q ss_pred cccceeceEEEEeCCeE--EEEECCCCCcHHHHHHHHHcCC
Q 006571 169 EKDILNGITGSVNPGEV--LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~--~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+++.++..++.|++ +.+.||+|+||||+++++++.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45688899999999998 9999999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=59.27 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|.|++||||||+.+.|+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0025 Score=59.60 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|.++.|.|++||||||+.+.|+.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999754
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.038 Score=61.05 Aligned_cols=35 Identities=23% Similarity=0.168 Sum_probs=29.4
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+.+..-+.+|+++.|.|++|+|||||+--++-
T Consensus 230 ~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 230 TGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp TTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 45666655699999999999999999999877764
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.015 Score=72.77 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=25.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=+++|+++.|.||+|+|||||+..++..
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~ 755 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAA 755 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHH
Confidence 5999999999999999999999999863
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0018 Score=64.64 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=24.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++++++.+++| +.|.||+|+|||||+++|++..
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 455556666665 8899999999999999999743
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0031 Score=62.74 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=45.2
Q ss_pred HHHhhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEeCCC---------------------CcHHHhccCE
Q 006571 308 NEIIINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQP---------------------SSRLFHKFDK 365 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsg-LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~---------------------~~~i~~~~D~ 365 (640)
.++..+|+++++||+-.- .+.......++.+..+...|..|+.++|-- .+.+++.||.
T Consensus 79 ~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~ 158 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFD 158 (228)
T ss_dssp HHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSE
T ss_pred HHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCe
Confidence 334578999999997642 332222333444444556688899998821 1234455666
Q ss_pred EEEEcCCeEEEecChHHHHHHHHh
Q 006571 366 LILLGKGSLLYFGKASEAMAYFSS 389 (640)
Q Consensus 366 i~vL~~G~iv~~G~~~~~~~~f~~ 389 (640)
|.+++ -+|+++.+.+..
T Consensus 159 v~lvD-------~~p~~l~~rl~~ 175 (228)
T 2r8r_A 159 LVLID-------LPPRELLERLRD 175 (228)
T ss_dssp EEEBC-------CCHHHHHHHHHT
T ss_pred EEEec-------CCHHHHHHHHHC
Confidence 66654 467777776654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=59.86 Aligned_cols=22 Identities=50% Similarity=0.685 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0027 Score=62.87 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.-.+|.+++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567889999999999999999999974
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.046 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..|..-+.|.||+|+|||||.+.++...
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566778899999999999999999743
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=60.41 Aligned_cols=38 Identities=39% Similarity=0.412 Sum_probs=27.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCC-CCcccEEEECCE
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLME-PTVGGSITYNDH 221 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~-~~~~G~I~~~G~ 221 (640)
.+++|+|+||||||||++.|.+.+.. ...-|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 58899999999999999999975421 112356665543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0032 Score=59.27 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+|.++.|.|++||||||+.+.|+-.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999853
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0022 Score=69.00 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=32.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCC---------CCCcccEEEECCE
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYNDH 221 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~---------~~~~~G~I~~~G~ 221 (640)
..+..|..++|+|+||+|||||+|.|+|... ..+..|.|.++|.
T Consensus 17 g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 17 GRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3557888999999999999999999998521 1134577777653
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0032 Score=59.54 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++.++.|.|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999985
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0036 Score=62.57 Aligned_cols=24 Identities=33% Similarity=0.547 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.-+++|.||+||||||+.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999963
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.011 Score=61.95 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=25.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-+.+|.++.|.||+|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999999999999999984
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.072 Score=56.61 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=24.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-+++|+++.|.||+|+|||||...++-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 689999999999999999999887764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.004 Score=57.28 Aligned_cols=19 Identities=42% Similarity=0.726 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLL 203 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L 203 (640)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0051 Score=58.73 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0044 Score=59.72 Aligned_cols=22 Identities=45% Similarity=0.752 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|+||||||||||++.|...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.005 Score=57.99 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++..+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0049 Score=58.66 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999743
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0049 Score=63.29 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=28.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G 220 (640)
..|.++.|.|||||||||+.+.|+..+. .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~----~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ----GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT----TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC----CCeEEEec
Confidence 4578999999999999999999986431 35566665
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0047 Score=62.11 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999743
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.019 Score=55.47 Aligned_cols=53 Identities=23% Similarity=0.357 Sum_probs=40.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------CCCcHHHhccCEEEEEc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------~~~~~i~~~~D~i~vL~ 370 (640)
+.+++++||.-- +|+. +++.+++++..|+.||++-+ .++.++..+||.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999644 6643 35677777777999999999 44567778889887764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0057 Score=58.54 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57789999999999999999999644
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0059 Score=59.33 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999996
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.01 Score=55.99 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999876654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=57.84 Aligned_cols=25 Identities=36% Similarity=0.321 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+..+.|.|++||||||+.+.|+-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.047 Score=58.10 Aligned_cols=26 Identities=38% Similarity=0.684 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++.-+.|.||+|+|||+|.+.|+..
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 35667899999999999999999964
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0064 Score=56.58 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0029 Score=60.95 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0062 Score=58.50 Aligned_cols=26 Identities=31% Similarity=0.415 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|.+++|.|++||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0061 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++.+++|.|++||||||+.+.|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3677999999999999999999985
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.007 Score=58.17 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|.+++|.|++||||||+.+.|+-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56889999999999999999999853
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0071 Score=56.62 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++||||||+.+.|+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999964
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0066 Score=61.39 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.008 Score=57.18 Aligned_cols=22 Identities=36% Similarity=0.620 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+++|+|++||||||+.+.|+.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999996
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0088 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.+++|.|++||||||+.+.|+-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0074 Score=56.72 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0098 Score=56.43 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+|++|||||||++.|...+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999998754
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0097 Score=55.94 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999853
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=57.60 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|-++.|+|++||||||+.+.|+..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999863
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0079 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++.+++|.|++||||||+.+.|+..
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999999853
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0099 Score=54.06 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.011 Score=54.32 Aligned_cols=23 Identities=39% Similarity=0.738 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.|..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.047 Score=69.30 Aligned_cols=153 Identities=16% Similarity=0.199 Sum_probs=86.1
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
+-|+.+- +=+++|+++.|.||+|+|||||...++.... . .| ..+.|+.-+..+-+ ++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a--~-~G--------------~~vlyis~E~s~~~---~~- 427 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ--R-EG--------------KTCAFIDAEHALDP---IY- 427 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH--T-TT--------------CCEEEECTTSCCCH---HH-
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH--h-cC--------------CeEEEEEcCCCHHH---HH-
Confidence 3466554 3599999999999999999999888874321 1 11 12444443322111 00
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL 326 (640)
+. .+|++. .+-.+- ...+. .+-+.+++.++ .+|+++++|.-++-.
T Consensus 428 ----a~----------------------~lGvd~-~~L~I~----~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 428 ----AR----------------------KLGVDI-DNLLCS----QPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ----HH----------------------HTTCCT-TTCEEE----CCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ----HH----------------------HcCCCH-HHeEEe----CCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 11 112110 000110 11233 23456666665 479999999987655
Q ss_pred C-H------------HHHHHHHHHHHHH---HH-CCCEEEEEeCCCCc---------------HHHhccCEEEEEcCCeE
Q 006571 327 D-S------------TTALRIVQMLQDI---AE-AGKTVVTTIHQPSS---------------RLFHKFDKLILLGKGSL 374 (640)
Q Consensus 327 D-~------------~s~~~i~~~L~~l---~~-~g~TvI~~tH~~~~---------------~i~~~~D~i~vL~~G~i 374 (640)
. + ..+..+.+.|++| ++ .+.+||++.|--.. .+...+|-++.|++...
T Consensus 475 ~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEeccc
Confidence 2 1 1223455666666 33 58899998874211 25567898888876554
Q ss_pred EEe
Q 006571 375 LYF 377 (640)
Q Consensus 375 v~~ 377 (640)
...
T Consensus 555 ~~~ 557 (2050)
T 3cmu_A 555 VKE 557 (2050)
T ss_dssp EEE
T ss_pred ccC
Confidence 333
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.011 Score=53.82 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.032 Score=50.68 Aligned_cols=42 Identities=7% Similarity=0.154 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
+..+|++||.- .|+...+..+.+.+.+....+..+|+++..+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888776433355677777654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.008 Score=56.28 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=18.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998543
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.0092 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47899999999999999998743
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.011 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.03 E-value=0.017 Score=60.22 Aligned_cols=36 Identities=31% Similarity=0.327 Sum_probs=31.7
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
...+++..+.+ .|.-++|+|+||+|||||...|.++
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 46788888887 8899999999999999999999873
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.012 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=53.42 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999753
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.013 Score=59.80 Aligned_cols=22 Identities=50% Similarity=0.872 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|+|.
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.013 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=53.54 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.012 Score=57.49 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=21.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++.+++|.|++||||||+.+.|+..
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999853
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.013 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999975
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=54.24 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=55.89 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|.|++||||||+.+.|+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999974
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.88 E-value=0.013 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999754
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.015 Score=55.54 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+-+++|.|++||||||+.+.|+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999853
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=53.18 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47899999999999999999753
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=53.91 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999743
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=53.97 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998743
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.017 Score=53.28 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.-.++|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456899999999999999999974
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.24 Score=62.17 Aligned_cols=154 Identities=17% Similarity=0.233 Sum_probs=86.8
Q ss_pred cceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 171 DILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 171 ~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
+-|+.+- +=+++|+++.|.||+|+|||||.--++.... ..| ..+.|+.-+...-+ +
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~---~~G--------------~~vlyis~E~s~~~---~-- 426 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REG--------------KTCAFIDAEHALDP---I-- 426 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---HTT--------------CCEEEECTTSCCCH---H--
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HhC--------------CCeEEEEccCchHH---H--
Confidence 4566664 3599999999999999999999887764221 111 23556654432211 0
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEII--INPSLLFLDEPTSGL 326 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~--~~P~iLlLDEPTsgL 326 (640)
++ +.+|++. .+-.+- ..-++.| -+.+++.++ .+|+++++|..+.=.
T Consensus 427 ---~a----------------------~~lGvd~-~~L~i~----~~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~ 474 (1706)
T 3cmw_A 427 ---YA----------------------RKLGVDI-DNLLCS----QPDTGEQ--ALEICDALARSGAVDVIVVDSVAALT 474 (1706)
T ss_dssp ---HH----------------------HHTTCCG-GGCEEE----CCSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---HH----------------------HHcCCCH-HHeEEc----CCCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhh
Confidence 01 1122210 000010 0112333 234555554 479999999998766
Q ss_pred CH-------------HHHHHHHHHHHHH---H-HCCCEEEEEeCCC---------------CcHHHhccCEEEEEcCCeE
Q 006571 327 DS-------------TTALRIVQMLQDI---A-EAGKTVVTTIHQP---------------SSRLFHKFDKLILLGKGSL 374 (640)
Q Consensus 327 D~-------------~s~~~i~~~L~~l---~-~~g~TvI~~tH~~---------------~~~i~~~~D~i~vL~~G~i 374 (640)
.. .....+.+.+++| + +.+.+||++.|-. ...+...+|-++.+.+.+.
T Consensus 475 ~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~ 554 (1706)
T 3cmw_A 475 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGA 554 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEE
T ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccc
Confidence 41 1223445555555 3 3589999998852 1235577898888876554
Q ss_pred EEec
Q 006571 375 LYFG 378 (640)
Q Consensus 375 v~~G 378 (640)
...|
T Consensus 555 ~~~g 558 (1706)
T 3cmw_A 555 VKEG 558 (1706)
T ss_dssp EEET
T ss_pred cccC
Confidence 3333
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.023 Score=60.43 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=28.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCCC---------CCCcccEEEECC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRLM---------EPTVGGSITYND 220 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~~---------~~~~~G~I~~~G 220 (640)
|-.++|+|.+|+|||||+|.|+|... ..+..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998321 012457777765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.012 Score=55.31 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.7
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.+.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999974
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.015 Score=56.18 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|.||+||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999975
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.012 Score=55.20 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.|.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999975
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.22 Score=54.24 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 56899999999999999999999644
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.0092 Score=63.65 Aligned_cols=45 Identities=11% Similarity=0.117 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 313 NPSLLFLDEPTSGLD---STTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD---~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
.|.++++||.=.-++ +.....+.+.+++.++.|..++++||.+++
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 578999999988774 667777888888877778899999999864
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.016 Score=54.56 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=53.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999975
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.017 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+++|.|++||||||+.+.|+-
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=57.03 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999853
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=52.77 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.015 Score=54.40 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68899999999999999999853
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=54.34 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|+.|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999999853
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.016 Score=53.92 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999999754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++|.|++||||||+.+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999853
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.017 Score=54.06 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.++|+|++|+|||||++.|.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.019 Score=53.24 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++++|.|+.||||||+.+.|+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999853
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=54.04 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+++|.|++||||||+.+.|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.018 Score=53.08 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.014 Score=54.29 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999999974
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.02 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.018 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+||+||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999853
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=53.90 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.019 Score=52.92 Aligned_cols=21 Identities=43% Similarity=0.445 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|.|++||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.017 Score=52.79 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.13 Score=51.15 Aligned_cols=53 Identities=25% Similarity=0.291 Sum_probs=44.3
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---------CCcHHHhccCEEEEEc
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQ---------PSSRLFHKFDKLILLG 370 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~---------~~~~i~~~~D~i~vL~ 370 (640)
.+.+++++||.---.| +.+.++.+++.|+.||++-++ .+..+..+||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999987754 566666666689999999999 8888999999998875
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.017 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.52 E-value=0.018 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.016 Score=54.44 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++|+|++||||||+.+.|+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999853
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.022 Score=56.69 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++-+++|.||+||||||+.+.|+-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999985
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.017 Score=53.06 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=53.02 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999999743
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.019 Score=53.14 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48899999999999999999743
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.012 Score=54.70 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999875
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=94.41 E-value=0.019 Score=52.68 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=94.38 E-value=0.02 Score=59.05 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.| .++|+|++|+|||||+|.|.|.
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCC
Confidence 344 5899999999999999999985
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.02 Score=53.59 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999999753
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.02 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|||||||+|.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.022 Score=58.91 Aligned_cols=23 Identities=43% Similarity=0.611 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999853
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.021 Score=54.89 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999999854
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.018 Score=58.30 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.043 Score=53.50 Aligned_cols=36 Identities=25% Similarity=0.288 Sum_probs=29.0
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
...++..-.. ..|..++|+||+|+|||||...|+.+
T Consensus 22 ~~~lHa~~v~-~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 22 RRSMHGVLVD-IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCCEESEEEE-ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ceeeeEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3466765555 46789999999999999999999854
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.022 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.1 Score=51.32 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC---------CCCcHHHhccCEEEEEc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH---------QPSSRLFHKFDKLILLG 370 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH---------~~~~~i~~~~D~i~vL~ 370 (640)
+.+++++||.-- +|+. +++.+++++..|+.||++-+ .++..+..+||.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999866 6643 33677777777999999999 66677888888888775
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.022 Score=53.95 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999999753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.02 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998753
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.037 Score=58.20 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.++.|+||+|||||||...|+.++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999644
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.023 Score=53.32 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999999753
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.023 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.=.++|+|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999999743
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=53.25 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999999743
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.022 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 5899999999999999999974
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.02 Score=54.53 Aligned_cols=21 Identities=43% Similarity=0.692 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|++|+|||||++.+.|
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999975
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.025 Score=56.36 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998633
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.10 E-value=0.022 Score=60.69 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||+|.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999974
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=94.09 E-value=0.03 Score=51.73 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=22.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998643
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.024 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 46899999999999999999753
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.022 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999753
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.028 Score=57.29 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+.|.||+|+|||||.++|++.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3689999999999999999999754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.05 E-value=0.03 Score=51.69 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=94.05 E-value=0.028 Score=55.06 Aligned_cols=21 Identities=43% Similarity=0.678 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.023 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.04 E-value=0.025 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.03 E-value=0.025 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.|.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.032 Score=57.15 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|+.|+|||||++.|.|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999964
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.027 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.028 Score=56.57 Aligned_cols=22 Identities=45% Similarity=0.658 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|+|.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.026 Score=54.93 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+|-.+.|+|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3557899999999999999999853
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.029 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.-+++|.|+.||||||+.+.|+.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.026 Score=53.58 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|++|+|||||++.+.|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999996
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.027 Score=52.79 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.027 Score=53.32 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.++|+|++|+|||||++.+.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999998643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.034 Score=54.47 Aligned_cols=27 Identities=41% Similarity=0.644 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998654
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.027 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.|++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.025 Score=56.10 Aligned_cols=28 Identities=36% Similarity=0.616 Sum_probs=21.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+|.++.|.|++||||||+.+.|+..+
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999999998644
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.026 Score=53.28 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.025 Score=53.70 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
=.++|+|++|+|||||++.|.+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 368899999999999999999854
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.028 Score=57.00 Aligned_cols=22 Identities=50% Similarity=0.809 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|.+|||||||+|.|.|.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.029 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.83 E-value=0.027 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999999853
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.029 Score=52.41 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999999753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.026 Score=53.04 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.017 Score=55.74 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++.|.|.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 36899999999999999999985
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.03 Score=52.61 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999974
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.029 Score=57.16 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHH
Q 006571 184 EVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~ 204 (640)
-+++|.|++||||||+.+.|+
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.03 Score=53.34 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
=.++|+|++|+|||||++.|.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999999743
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.031 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999975
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=0.027 Score=53.55 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.029 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999999874
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.75 E-value=0.03 Score=52.42 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=.++|+|++|+|||||++.+.+.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999963
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.031 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999999753
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.029 Score=52.65 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999974
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.032 Score=54.33 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999873
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.023 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.037 Score=54.51 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++..++.|+||+||||+|..+.|+-.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 355678999999999999999999953
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=0.032 Score=54.02 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|.|++||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999985
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.031 Score=52.96 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
=.++|+|++|+|||||++.+.+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 467999999999999999999743
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.034 Score=53.31 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999743
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.66 E-value=0.018 Score=59.13 Aligned_cols=24 Identities=21% Similarity=0.479 Sum_probs=18.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++-+++|.||+||||||+.+.|+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999985
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.037 Score=56.33 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999995
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.028 Score=52.41 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999974
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.04 Score=54.19 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+..+.|+|++||||||+.+.|+-.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999853
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.60 E-value=0.03 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999988643
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.039 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.026 Score=52.06 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999974
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.032 Score=53.33 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999743
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.038 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=.++|+|++|+|||||++.+.+.
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.037 Score=52.03 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 57899999999999999988643
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.04 Score=54.99 Aligned_cols=26 Identities=23% Similarity=0.495 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|.|++||||||+++.|...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.037 Score=53.33 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999999974
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.041 Score=52.65 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999743
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.36 E-value=0.035 Score=53.41 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999853
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.038 Score=51.07 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998643
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.026 Score=52.41 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=9.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999863
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.041 Score=59.36 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=23.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-.+..++.|+|++||||||+.+.|+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34578999999999999999999985
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.046 Score=53.59 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.++.+.|++||||||+++.|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998654
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=93.20 E-value=0.038 Score=52.52 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999999743
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.036 Score=52.44 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.=.++|+|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999975
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.05 Score=59.61 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=29.8
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++.+ ..+-+|+.++|+||||+|||||++.|+..
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence 466666 66778999999999999999999999863
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=0.047 Score=53.69 Aligned_cols=27 Identities=33% Similarity=0.529 Sum_probs=24.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|.++.+.|++||||||+.+.|...+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999999755
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.055 Score=53.49 Aligned_cols=27 Identities=37% Similarity=0.439 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998644
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.055 Score=56.37 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.+++|+||+|||||||...|+-.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4589999999999999999999643
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.061 Score=52.50 Aligned_cols=60 Identities=22% Similarity=0.184 Sum_probs=39.3
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCc---------HHHhccCEEEEEc
Q 006571 311 IINPSLLFLDEPTS----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSS---------RLFHKFDKLILLG 370 (640)
Q Consensus 311 ~~~P~iLlLDEPTs----gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~---------~i~~~~D~i~vL~ 370 (640)
-.+|+++++|--+. .-|.....+++..|+.++++ +.++++++|.... .+...+|-|+.|+
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 34788999986432 11444556777788887754 8999999886321 1234678887774
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.052 Score=53.58 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999654
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.047 Score=57.43 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+||+|||||||.+.|+..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 479999999999999999999744
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=93.07 E-value=0.053 Score=51.85 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=29.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 312 INPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 312 ~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+|.+|++||.-. +|......+.+.+.+. ..+..+|++++++.
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChH
Confidence 3578999999765 7877777666666432 12567788887753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=93.07 E-value=0.034 Score=55.74 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999999644
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.047 Score=54.78 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.02 E-value=0.043 Score=51.51 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999974
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.048 Score=54.93 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++++|++|+|||||+|.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999853
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.055 Score=52.67 Aligned_cols=22 Identities=41% Similarity=0.745 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999973
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.049 Score=52.60 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.+++|+|++||||||+.+.|+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999999999964
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.056 Score=52.67 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.|+||+||||+|.-+.|+-
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999995
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.049 Score=52.63 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++|+|++|+|||||++-+++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.025 Score=54.38 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.055 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.577 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.051 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4799999999999999999874
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.06 Score=56.25 Aligned_cols=24 Identities=42% Similarity=0.639 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999744
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.058 Score=54.50 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-.++++|.+|+|||||+|.|.|..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred hheEEeCCCCCCHHHHHHHHhccc
Confidence 578999999999999999999854
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.036 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
=.++|+|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999975
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.60 E-value=0.026 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999874
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.05 Score=59.33 Aligned_cols=53 Identities=9% Similarity=0.092 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEP-TSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEP-TsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
.|.+-...+...+.+++++|+... +.++.... ..+.+.|+ +.++.+|++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~ 141 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKL 141 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECc
Confidence 366667777778888887665443 44566554 45555554 3577888777653
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.55 E-value=0.22 Score=57.72 Aligned_cols=23 Identities=35% Similarity=0.686 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+.|.||+|+|||+|.+.|+..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999643
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=92.51 E-value=0.19 Score=55.36 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=52.9
Q ss_pred CCcCCHHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 293 VRGVSGGERKRVCIGNE--III---------------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~a--L~~---------------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
..++||||+|-.-+|.+ ++. .=.+++|||+ +-+|.......+++++++ |-=+|+++-.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 45799999997544443 322 1247999999 999999999999999865 7767777755
Q ss_pred CcHHHhccCEEEEEc
Q 006571 356 SSRLFHKFDKLILLG 370 (640)
Q Consensus 356 ~~~i~~~~D~i~vL~ 370 (640)
.+....|.++.+-
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 2456778888774
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=92.50 E-value=0.1 Score=49.65 Aligned_cols=35 Identities=20% Similarity=0.076 Sum_probs=27.2
Q ss_pred ccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 170 ~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+..++.. +---.|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas-~v~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHAN-FLVIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESE-EEEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEE-EEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3455554 4445688999999999999999998875
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.37 Score=61.28 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=32.1
Q ss_pred cccceeceE--EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 169 EKDILNGIT--GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 169 ~~~iL~~vs--~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
..+.|+++. +-+++|+.+.|.||+|+|||||...+.
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 346788888 589999999999999999999999887
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.02 Score=59.30 Aligned_cols=42 Identities=7% Similarity=0.135 Sum_probs=31.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
++.++++|| ...|++..+..+.+.+.+... ...+|++++++.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchh
Confidence 567999999 788999888888888776432 345666776654
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.058 Score=51.51 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
=.++|+|++|+|||||++.+.+.
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999999864
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.065 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=92.24 E-value=0.062 Score=51.28 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.02 Score=57.22 Aligned_cols=30 Identities=33% Similarity=0.701 Sum_probs=23.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 175 GITGSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 175 ~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++......| +.|.||+|+|||||.+.|+..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444555 779999999999999999974
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=92.11 E-value=0.088 Score=54.70 Aligned_cols=25 Identities=44% Similarity=0.551 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+++|+||+|||||||...|+..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999643
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.088 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.533 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-.+++|+||+|||||||.+.|+-.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999999643
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=91.53 E-value=0.083 Score=55.52 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.095 Score=49.48 Aligned_cols=41 Identities=12% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~ 355 (640)
++.+|++||. ..+++.....+.+.+.+.. .+..+|+++..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~ 142 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYV 142 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCCh
Confidence 6789999996 4567777666666665532 245566676654
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.1 Score=49.62 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC---------cHHHhccCEEEEE
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS---------SRLFHKFDKLILL 369 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~---------~~i~~~~D~i~vL 369 (640)
+++++++||.=- +|+ .+++.|+.+++.|..||++.++.. ..+...+|.|.-|
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l 136 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKK 136 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEEC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEe
Confidence 578999999743 443 366677777777999999888533 2344456666444
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.11 Score=47.20 Aligned_cols=42 Identities=14% Similarity=0.147 Sum_probs=28.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
+..+|++||. ..|++..+..+.+.|... .....+|+++..+.
T Consensus 76 ~~g~l~ldei-~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHP-EHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECG-GGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcCh-HHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 4468999998 468888888888887322 12456777777643
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.1 Score=53.65 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+-.++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 446899999999999999998875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.00013 Score=74.15 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=53.6
Q ss_pred ccccccccCccCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHHHH--------HHHHHHHHHHHHCCCEEEEE
Q 006571 282 RCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSL--LFLDEPTSGLDSTTA--------LRIVQMLQDIAEAGKTVVTT 351 (640)
Q Consensus 282 ~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~i--LlLDEPTsgLD~~s~--------~~i~~~L~~l~~~g~TvI~~ 351 (640)
+..++.++.+.++ +|+| ||++|+++++.+|++ +|+||+|+.||...+ ..+.+...++..+|+|.+.+
T Consensus 160 ~~l~~vi~qrl~~-~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~ 236 (261)
T 2eyu_A 160 FILQGIISQRLLP-KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLED 236 (261)
T ss_dssp HHEEEEEEEEEEC-CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHH
T ss_pred HHhhEEEEEEeEe-cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHH
Confidence 3445666544433 7888 899999999999999 999999999998743 22344444445569998888
Q ss_pred eCCCCc
Q 006571 352 IHQPSS 357 (640)
Q Consensus 352 tH~~~~ 357 (640)
.|+.+.
T Consensus 237 a~r~~~ 242 (261)
T 2eyu_A 237 AMEASP 242 (261)
T ss_dssp HHHHCS
T ss_pred HHHHhC
Confidence 887553
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.1 Score=52.95 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355678999999999999999988643
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.30 E-value=0.11 Score=53.01 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+-.++|+|.+|+|||||+|.|.|..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3468999999999999999999854
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.12 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..-+++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44689999999999999999998643
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.094 Score=56.80 Aligned_cols=22 Identities=36% Similarity=0.736 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|.|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.34 E-value=0.042 Score=52.18 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
=.++|+|++|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3589999999999999998875
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.14 Score=49.71 Aligned_cols=25 Identities=44% Similarity=0.729 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|.+++|=|+-||||||+++.|+..+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 5688999999999999999999755
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=90.93 E-value=0.1 Score=56.02 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+++|||||+|.|.|..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37899999999999999999853
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.12 Score=51.35 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.+||+|++||||||+.+.|+-.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 35799999999999999999853
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=90.68 E-value=0.097 Score=57.37 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+|=.++|+|++|+|||||+|.|.|.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3445999999999999999999984
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=90.68 E-value=0.081 Score=50.94 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHH-HHcC
Q 006571 185 VLALMGPSGSGKTTLLNL-LSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~-L~G~ 206 (640)
.++|+|++|+|||||++. +.|.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~ 39 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGE 39 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 378999999999999998 5553
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.14 Score=51.37 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=21.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+..-+.|.||+|+|||||.+.|+.
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHH
Confidence 4556788999999999999999996
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.14 Score=53.48 Aligned_cols=27 Identities=26% Similarity=0.450 Sum_probs=23.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|..+.|.||+|+|||||.+.++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999744
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.029 Score=53.20 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=90.35 E-value=0.15 Score=53.74 Aligned_cols=29 Identities=10% Similarity=0.259 Sum_probs=22.8
Q ss_pred cCCHHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 006571 295 GVSGGERKRVCIGNEI---II--NPSLLFLDEPT 323 (640)
Q Consensus 295 ~LSGGqrqRv~IA~aL---~~--~P~iLlLDEPT 323 (640)
.+|+||+||..|+++| +. +++++++|||+
T Consensus 296 ~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 296 RSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 4899999999999999 77 89999999997
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=90.34 E-value=0.13 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+-..+.|.||+|+|||+|.+.|+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3346778899999999999999964
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=90.22 E-value=0.13 Score=54.63 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4567999999999999999999985
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=90.20 E-value=0.12 Score=58.41 Aligned_cols=34 Identities=41% Similarity=0.632 Sum_probs=26.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|.+++ .+--.++|+|++|+|||||+|.|.|..
T Consensus 29 ~~L~~i~---~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 29 KILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHhcc---CCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3566642 344678999999999999999999853
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=90.17 E-value=0.17 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+.-+.|.||+|+|||+|+++|+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 640 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-42 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-41 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-40 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 9e-40 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-38 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-38 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-37 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 4e-37 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-37 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-37 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-36 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-35 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-35 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-33 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-32 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 9e-31 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-30 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-30 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-28 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-25 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-11 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-09 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-06 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 2e-05 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 5e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 1e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 1e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-04 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 4e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 6e-04 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 7e-04 | |
| d1m8pa3 | 183 | c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d | 8e-04 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.001 | |
| d1f5na2 | 277 | c.37.1.8 (A:7-283) Interferon-induced guanylate-bi | 0.002 | |
| d1x6va3 | 195 | c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin | 0.003 | |
| d1kaga_ | 169 | c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.004 | |
| d1xjca_ | 165 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.004 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 150 bits (381), Expect = 2e-42
Identities = 65/224 (29%), Positives = 111/224 (49%), Gaps = 17/224 (7%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
E L + ++ GE +++MGPSGSGK+T+LN++ L +PT G + ++ +
Sbjct: 13 MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPT-EGEVYIDNIKTN 70
Query: 225 --------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVIN 276
K + KIGFV Q L P LT E + + + ++ +++ KRA++ +
Sbjct: 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLK 130
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
LE +SGG+++RV I + NP ++ D+PT LDS T +I+Q
Sbjct: 131 MAELEE----RFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 337 MLQDIA-EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379
+L+ + E GKTVV H + + +++I L G + K
Sbjct: 187 LLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 148 bits (374), Expect = 3e-41
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 226
+N + ++ GE L L+GPSG GKTT L +++G L EPT G I + D +
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPT-EGRIYFGDRDVTYLPP 75
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
I V Q ++PH+TV E + + ++ K + +KR L +E +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN- 131
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 345
+ +SGG+R+RV + I++ P +L +DEP S LD+ + + ++ + +
Sbjct: 132 ----RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 187
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
T + H D++ ++ +G LL G +E
Sbjct: 188 VTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTE 223
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 145 bits (368), Expect = 5e-40
Identities = 53/216 (24%), Positives = 95/216 (43%), Gaps = 18/216 (8%)
Query: 170 KDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKS 229
+L I ++ GE+LA+ G +GSGKT+LL L+ G +E + G I ++
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILG-ELEAS-EGIIKHSG--------- 97
Query: 230 KIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIG 289
++ F +Q + P T+KE + + + K + +T++G
Sbjct: 98 RVSFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 290 GSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVV 349
V +SGG+R R+ + + + L LD P LD T ++ + A KT +
Sbjct: 154 EGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 350 TTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ K DK+++L +GS ++G SE +
Sbjct: 213 LVTSKMEH--LRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 144 bits (364), Expect = 9e-40
Identities = 60/231 (25%), Positives = 112/231 (48%), Gaps = 26/231 (11%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
++L G++ G+V++++G SGSGK+T L ++ +E G+I N +
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF--LEKPSEGAIIVNGQNINLVRD 71
Query: 225 -------------KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRA 271
+ L++++ V Q L+ H+TV E + A + L L+K +RA
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERA 129
Query: 272 IDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTA 331
+ + ++G++ G + +SGG+++RV I + + P +L DEPTS LD
Sbjct: 130 LKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 185
Query: 332 LRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++++Q +AE GKT+V H+ H +I L +G + G +
Sbjct: 186 GEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQ 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 141 bits (357), Expect = 1e-38
Identities = 70/242 (28%), Positives = 115/242 (47%), Gaps = 23/242 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
+ V+++ + E IL I S+ GE +A +G SG GK+TL+NL+ R +
Sbjct: 17 IDIDHVSFQY------NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP-RFYD 69
Query: 210 PTVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
T G I + H SL+++IG V Q D + TVKE + + +
Sbjct: 70 VT-SGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLGRPTATDEEVVEA 127
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
K A D I L G DT +G V+ +SGG+++R+ I + NP +L LDE T
Sbjct: 128 AKMANAHDFIMNLPQGY----DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 182
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD + I + L +++ +T + H+ S+ DK++++ G ++ G E
Sbjct: 183 SALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHREL 239
Query: 384 MA 385
+A
Sbjct: 240 IA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (356), Expect = 1e-38
Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 19/242 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
++F DV++ + + +L G+T ++ PGEV AL+GP+GSGK+T+ LL L +
Sbjct: 12 VQFQDVSFA-----YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL-QNLYQ 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR-LPNTLTK 264
PT GG + + P + L ++ V Q+ +F +++E + Y + +T
Sbjct: 66 PT-GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITA 123
Query: 265 QQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTS 324
+ A I+ GL + DT + +SGG+R+ V + +I P +L LD+ TS
Sbjct: 124 AAVKSGAHSFIS--GLPQGYDTEV-DEAGSQLSGGQRQAVALARALIRKPCVLILDDATS 180
Query: 325 GLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
LD+ + L++ Q+L + E ++V+ S L + D ++ L G++ G +
Sbjct: 181 ALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQL 238
Query: 384 MA 385
M
Sbjct: 239 ME 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 136 bits (344), Expect = 1e-37
Identities = 44/194 (22%), Positives = 97/194 (50%), Gaps = 15/194 (7%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
++ ++ +K +L IT ++ G V+ GP+G GKTTLL +S ++P G I YN
Sbjct: 5 IRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-YLKPL-KGEIIYNG 62
Query: 221 HPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
P +K +K KI F+ ++ ++ ++V++ L A L + + +D + + +
Sbjct: 63 VPITK-VKGKIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEV 116
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ + +S G +RV + + +++N + LD+P +D + ++++ + +
Sbjct: 117 LDLKK------KLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170
Query: 341 I-AEAGKTVVTTIH 353
I E G ++++
Sbjct: 171 ILKEKGIVIISSRE 184
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 136 bits (345), Expect = 4e-37
Identities = 62/242 (25%), Positives = 113/242 (46%), Gaps = 22/242 (9%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L+F +VT+ E L I + G+ +AL+G SGSGK+T+ +L++
Sbjct: 14 LEFRNVTFT------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR--FY 65
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
G I + H SL++++ V+Q+ LF + +
Sbjct: 66 DIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEA 125
Query: 266 QKEKRAIDVINEL--GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPT 323
+ A+D IN++ GL DT+IG +SGG+R+R+ I ++ + +L LDE T
Sbjct: 126 ARMAYAMDFINKMDNGL----DTIIG-ENGVLLSGGQRQRIAIARALLRDSPILILDEAT 180
Query: 324 SGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEA 383
S LD+ + I L ++ + +T + H+ S + D+++++ G ++ G SE
Sbjct: 181 SALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSEL 237
Query: 384 MA 385
+A
Sbjct: 238 LA 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 136 bits (343), Expect = 4e-37
Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 19/239 (7%)
Query: 151 KFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEP 210
F ++ ++ + IL+ I S+ GEV+ ++G SGSGK+TL L+ R P
Sbjct: 3 TFRNIRFR------YKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQ-RFYIP 55
Query: 211 TVGGSITYNDHPYSK----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQ 266
G + + H + L+ ++G V QD+VL ++ + ++ A +
Sbjct: 56 E-NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR-SIIDNISLANPGMSVEKVIYAA 113
Query: 267 KEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGL 326
K A D I+EL G+ G+SGG+R+R+ I ++ NP +L DE TS L
Sbjct: 114 KLAGAHDFISELREGYNTIVGEQGA---GLSGGQRQRIAIARALVNNPKILIFDEATSAL 170
Query: 327 DSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
D + I++ + I + G+TV+ H+ S D++I++ KG ++ GK E ++
Sbjct: 171 DYESEHVIMRNMHKICK-GRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 135 bits (341), Expect = 9e-37
Identities = 66/240 (27%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLME 209
L V + + + IL I+ P ++A GPSG GK+T+ +LL +
Sbjct: 2 LSARHVDFAY-------DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLER-FYQ 53
Query: 210 PTVGGSITYNDHPYS----KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQ 265
PT G IT + P ++ +S+IGFV+QD + T++E LTY + Q
Sbjct: 54 PT-AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQ 111
Query: 266 QKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325
+ E ++ + G +SGG+R+R+ I + NP +L LDE T+
Sbjct: 112 VLDLAFARSFVENMPDQLNTEV--GERGVKISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
LDS + + + L + + G+T + H+ S+ DK+ + KG + GK +E +A
Sbjct: 170 LDSESESMVQKALDSLMK-GRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELVA 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 135 bits (342), Expect = 1e-36
Identities = 53/229 (23%), Positives = 104/229 (45%), Gaps = 23/229 (10%)
Query: 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS-----KS 226
L+G++ SVN G+V ++GP+GSGK+TL+N+++G ++ G + + + + +
Sbjct: 19 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITG-FLKAD-EGRVYFENKDITNKEPAEL 76
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLT----------KQQKEKRAIDVIN 276
I Q +TV E L + + L +++ ++A ++
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 277 ELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQ 336
L L D G +SGG+ K V IG ++ NP ++ +DEP +G+ A I
Sbjct: 137 FLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 191
Query: 337 MLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
+ ++ G T + H+ + + D L ++ G ++ G+ E +
Sbjct: 192 HVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEIK 239
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 130 bits (329), Expect = 4e-35
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 19/226 (8%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS 224
+ LN ++ V G++ ++G SG+GK+TL+ ++ L PT GS+ + +
Sbjct: 13 QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPT-EGSVLVDGQELT 70
Query: 225 K-------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINE 277
+ +IG + Q L TV + L K + ++R ++++
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSL 127
Query: 278 LGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQM 337
+GL D S+ +SGG+++RV I + NP +L DE TS LD T I+++
Sbjct: 128 VGLGDKHD-----SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182
Query: 338 LQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
L+DI G T++ H+ + D + ++ G L+ SE
Sbjct: 183 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSE 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 130 bits (328), Expect = 5e-35
Identities = 54/224 (24%), Positives = 105/224 (46%), Gaps = 14/224 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY---SK 225
+K+IL GI+ + GE+ L+GP+G+GKTT L ++S L++P+ G +T
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST-LIKPS-SGIVTVFGKNVVEEPH 71
Query: 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQD 285
++ I ++ ++ + ++ E L + A + + E+ GL
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIK 128
Query: 286 TMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAG 345
V S G +++ I +++NP L LDEPTSGLD A + ++L+ ++ G
Sbjct: 129 DR-----VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 183
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMAYFSS 389
T++ + H + D++ L+ G+++ G E + +
Sbjct: 184 LTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 125 bits (316), Expect = 2e-33
Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 18/220 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYN-----DHPY 223
+ GI V G+++ L+G +G+GKTT L+ ++G + G I +N + P
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAG--LVRAQKGKIIFNGQDITNKPA 75
Query: 224 SKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLER 282
+ I V + +FP LTV E L A R K+ ++ + + L+
Sbjct: 76 HVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKE 131
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA 342
+SGGE++ + IG ++ P LL +DEP+ GL + +++Q I
Sbjct: 132 RLKQ-----LGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN 186
Query: 343 EAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T++ +L G ++ GKASE
Sbjct: 187 QEGTTILLVEQNALG-ALKVAHYGYVLETGQIVLEGKASE 225
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 121 bits (306), Expect = 4e-32
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 28/228 (12%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS---- 224
E L ++G V GE+L L+GP+G+GK+TLL ++G M GSI + P
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG--MTSG-KGSIQFAGQPLEAWSA 67
Query: 225 KSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQ 284
L +++Q V LT + + + DV L L+
Sbjct: 68 TKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVAGALALDD-- 117
Query: 285 DTMIGGSFVRGVSGGERKRVCIGNEII-------INPSLLFLDEPTSGLDSTTALRIVQM 337
G +SGGE +RV + ++ LL LDEP + LD + ++
Sbjct: 118 ---KLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKI 174
Query: 338 LQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385
L + + G +V + H + L H + LL G +L G+ E +
Sbjct: 175 LSALCQQGLAIVMSSHDLNHTLRH-AHRAWLLKGGKMLASGRREEVLT 221
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (297), Expect = 9e-31
Identities = 64/223 (28%), Positives = 104/223 (46%), Gaps = 20/223 (8%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228
E + ++ V GE + L+GPSG GKTT L +++G L EP+ G I D + K
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPS-RGQIYIGDKLVADPEK 72
Query: 229 SK--------IGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL 280
I V Q L+PH+TV + + + LR + +Q+ ++R +V LGL
Sbjct: 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGL 129
Query: 281 ERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQD 340
+ R +SGG+R+RV +G I+ P + +DEP S LD+ +R+ L+
Sbjct: 130 TELLNRK-----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184
Query: 341 IAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ G T + H D++ ++ +G L G E
Sbjct: 185 LQRQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDE 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 117 bits (295), Expect = 1e-30
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 14/217 (6%)
Query: 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KS 226
E + I ++ GE + +GPSG GK+TLL +++G +E G + + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG--LETITSGDLFIGEKRMNDTPP 69
Query: 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDT 286
+ +G V Q L+PHL+V E +++ L K+ +R V L L D
Sbjct: 70 AERGVGMVFQSYALYPHLSVAENMSFGLKLAGAK---KEVINQRVNQVAEVLQLAHLLD- 125
Query: 287 MIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIA-EAG 345
+ +SGG+R+RV IG ++ PS+ LDEP S LD+ +++ + + G
Sbjct: 126 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 181
Query: 346 KTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+T++ H DK+++L G + GK E
Sbjct: 182 RTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLE 217
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 115 bits (290), Expect = 6e-30
Identities = 62/225 (27%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 161 LKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
++ ++ + L+ ++ V GE ++GP+G+GKT L L++G G I +
Sbjct: 4 IESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG--FHVPDSGRILLDG 61
Query: 221 HPYSK--SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL 278
+ K I FV Q+ LFPH+ VK+ L + + K + KR +D +L
Sbjct: 62 KDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGM------RMKKIKDPKRVLDTARDL 115
Query: 279 GLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQML 338
+E D +SGGE++RV + ++ NP +L LDEP S LD T +ML
Sbjct: 116 KIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 339 QDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+ + TV+ H + D++ ++ G L+ GK E
Sbjct: 171 SVLHKKNKLTVLHITHDQTE-ARIMADRIAVVMDGKLIQVGKPEE 214
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 112 bits (281), Expect = 1e-28
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 20/235 (8%)
Query: 158 KVILKGMT---SSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGG 214
++I+K ++ + L+ + ++ GE ++GPSG+GKTT + +++G L P+ G
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGE 61
Query: 215 ------SITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE 268
+ N KIG V Q L+P+LT E + + ++K++
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIR 118
Query: 269 KRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328
KR +V L + + R +SG +++RV + ++ +PSLL LDEP S LD+
Sbjct: 119 KRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 329 TTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382
+++++ G T++ H P+ +F D++ +L KG L+ GK +
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPED 227
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 102 bits (254), Expect = 5e-25
Identities = 52/204 (25%), Positives = 96/204 (47%), Gaps = 16/204 (7%)
Query: 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYS--KSLKSKIGFVTQDDV 239
+ L+GP+G+GK+ L L++G +++P G + N + + IGFV QD
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAG-IVKPD-RGEVRLNGADITPLPPERRGIGFVPQDYA 80
Query: 240 LFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGG 299
LFPHL+V + Y + + ++++R ++ E+ + +SGG
Sbjct: 81 LFPHLSVYRNIAYG-----LRNVERVERDRRVREM-----AEKLGIAHLLDRKPARLSGG 130
Query: 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSR 358
ER+RV + ++I P LL LDEP S +D T +++ L+ + ++ H
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE- 189
Query: 359 LFHKFDKLILLGKGSLLYFGKASE 382
D++ ++ G ++ GK E
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKE 213
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 58.5 bits (140), Expect = 1e-10
Identities = 19/194 (9%), Positives = 45/194 (23%), Gaps = 34/194 (17%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLT 245
+ + G G GKTTL+ + + G ++V P
Sbjct: 3 IIITGEPGVGKTTLVKKIVE-RLGKRAIG-------------------FWTEEVRDPETK 42
Query: 246 VKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305
+ + + + + + ++ +
Sbjct: 43 KRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-----------ELAIPILERA 91
Query: 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDK 365
++ +DE + + Q + + VV TI +
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFSKK-FRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 366 LILLGKGSLLYFGK 379
+ L L+
Sbjct: 149 IRRLPGAVLIELTP 162
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G V+ L GPS GK+T++ L R+ P + S++
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERI--PNLHFSVSATTRA 39
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 5e-05
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 283 CQDTMIGGSFVRGVSGGERKRVCIGNEIII---NPS-LLFLDEPTSGLDSTTALRIVQML 338
+ + +SGGE+ + I PS LDE + LD T RI +
Sbjct: 320 ATPPLKRFKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYI 379
Query: 339 QDIAEAGKTVVTTIHQPSSRLFHKFDKLI 367
+ + + +F K D L+
Sbjct: 380 RRHRNPDLQFIVISLKN--TMFEKSDALV 406
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 15/93 (16%), Positives = 30/93 (32%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
++ L G S +GK+ ++ L L EP + + ++S G + D
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI 275
+ + A + + DV
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVF 95
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 40.7 bits (94), Expect = 1e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTV 212
G +L L G GSGK+T+ L+ P V
Sbjct: 4 GNILLLSGHPGSGKSTIAEALANLPGVPKV 33
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 25/173 (14%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLME--PTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFP 242
+ L GP G GKTTL++ S L V G T + + + ++
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 243 HLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGL--ERCQDTMIGGSFVRGVSGGE 300
+ ++ + E+ A+ V+ Q + + +
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCV-IDEIGKMELFS 121
Query: 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIH 353
+ + + + P + L AL V+ +++ + VT +
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLAL--VEEIRNRKDVKVFNVTKEN 172
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 39.8 bits (92), Expect = 4e-04
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222
G + + PSG+GK++L+ L S+++
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 41
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 6e-04
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
+LA SG+GKTTLL L L + + + H
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYND 220
+ + LMG SGSGK+ + + ++ +L + G +
Sbjct: 4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR 43
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLME 209
G + L G SGK + L L +
Sbjct: 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 38.6 bits (88), Expect = 0.001
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPY 223
VL + G S SGKTTL N LS L E + + + D
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.1 bits (87), Expect = 0.001
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVG-----GSITYNDHPY 223
+ + GP SGKT+LL LL+ + PTV + Y+
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGV 48
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 0.002
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 165 TSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI---TYNDH 221
+ E IL+ IT + V+A++G +GK+ L+N L+G+ ++G ++ T
Sbjct: 17 ANPEALKILSAITQPMV---VVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIW 73
Query: 222 PYSKSLKSKIGFVT 235
+ K G +
Sbjct: 74 MWCVPHPKKPGHIL 87
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.4 bits (85), Expect = 0.003
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 183 GEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225
G + L G SG+GKTT+ L L+ + D+
Sbjct: 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 61
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Score = 36.6 bits (83), Expect = 0.003
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 186 LALMGPSGSGKTTLLNLLSGRLMEPTV 212
+ L+GP G+GK+T+ L+ +L
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNMEFY 31
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 36.5 bits (83), Expect = 0.004
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRL 207
+ + GP+G GK+T L+ +L
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQL 26
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Score = 36.4 bits (83), Expect = 0.004
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221
V ++G SGKTTL+ + +
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 640 | |||
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.85 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.57 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.1 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.82 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.87 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.78 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.5 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.31 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.03 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.0 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.97 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.89 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.88 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.81 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.73 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.61 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.54 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.49 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.48 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.43 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.39 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.37 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.33 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.32 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.31 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.3 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.26 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.24 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.14 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.13 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.12 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.98 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.98 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.97 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.96 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.95 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.89 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.88 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.85 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.83 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.73 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.72 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.71 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.68 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.67 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.65 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.63 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.62 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.61 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.61 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.56 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.5 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.49 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.49 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.45 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.39 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.38 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.38 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.26 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.24 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.17 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.17 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.14 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.13 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.13 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.11 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.03 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.96 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.89 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.85 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.84 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.83 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.82 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.76 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.73 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.71 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.7 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.58 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.53 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.44 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.41 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.29 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.2 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.18 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.09 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.04 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.03 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.03 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.0 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.99 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.96 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 93.93 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.91 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.9 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.9 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.76 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.71 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.69 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.68 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.68 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.63 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.55 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.49 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.45 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.44 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.43 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.42 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.36 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.32 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.24 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 93.21 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.18 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.07 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.99 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.9 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.89 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.84 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.81 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.77 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.76 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.72 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.71 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.65 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.63 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.61 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.57 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.56 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.55 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.55 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.52 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.38 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.29 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.26 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.2 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.13 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.1 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.04 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.04 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.02 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.94 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.91 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 91.73 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.71 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.64 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.58 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.57 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.51 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.36 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.31 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.19 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.08 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.05 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.01 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.92 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.84 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.79 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.77 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.71 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.44 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.24 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.2 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.13 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.12 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.94 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.84 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.75 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 88.48 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.33 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.22 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 88.0 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.93 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.84 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.8 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.79 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.69 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.64 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.61 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.59 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 86.18 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.81 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.68 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.06 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.25 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.08 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.42 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.37 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.27 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.05 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 82.05 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.93 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.29 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.1 |
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.1e-56 Score=445.34 Aligned_cols=217 Identities=26% Similarity=0.475 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
.|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|.+. +++|+|.+||+++.+ .
T Consensus 6 ~I~v~nlsk~y--------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~ 75 (239)
T d1v43a3 6 EVKLENLTKRF--------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPP 75 (239)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCG
T ss_pred eEEEEEEEEEE--------CCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCCCEEEEcceecccCCc
Confidence 48999999999 56789999999999999999999999999999999999653 569999999999863 4
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.+++||||||++.+||++||+||+.|++..+ ..++++.+++++++++.+||++..|. ++.+|||||||||+|
T Consensus 76 ~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~LSGGq~QRvai 147 (239)
T d1v43a3 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNR-----YPAQLSGGQRQRVAV 147 (239)
T ss_dssp GGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTS-----CTTTCCSSCHHHHHH
T ss_pred ccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcC-----ChhhCCHHHHHHHHH
Confidence 5678999999999999999999999987554 46788889999999999999887765 568999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|+||||||||+|||+.++.++++.|+++.++ |+|||++|||+. ++.++||||++|++|+|++.|+++++.
T Consensus 148 AraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~ 225 (239)
T d1v43a3 148 ARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTEVY 225 (239)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999765 999999999975 578999999999999999999999985
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.2e-56 Score=444.34 Aligned_cols=217 Identities=28% Similarity=0.485 Sum_probs=161.4
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.+||+++.+ ..
T Consensus 1 Iev~nv~k~y--------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~ 70 (232)
T d2awna2 1 VQLQNVTKAW--------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70 (232)
T ss_dssp EEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGG
T ss_pred CEEEEEEEEE--------CCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEECCCCchh
Confidence 6899999999 56789999999999999999999999999999999999653 569999999999863 35
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
++.||||||++.+|+.+||+||+.|+...+ ..++++.+++++++++.++|.+..|.. +.+|||||||||+||
T Consensus 71 ~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~-----~~~LSGGqkQRvaiA 142 (232)
T d2awna2 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRK-----PKALSGGQRQRVAIG 142 (232)
T ss_dssp GTCEEEECSSCCC------------------------CHHHHHHHHHHHHC--------------------------CHH
T ss_pred hceeeeeccccccccchhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCChhhhhCC-----hhhCCHHHHHHHHHH
Confidence 678999999999999999999999987654 345667788899999999999877754 578999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.+|++|||||||+|||+.++.++++.|+++.+ .|+|||++||++. ++.++||||++|++|+|++.|+++++.+
T Consensus 143 raL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~G~iv~~G~~~el~~ 220 (232)
T d2awna2 143 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLELYH 220 (232)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999999999999999999999999965 5999999999965 5889999999999999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.4e-55 Score=440.47 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=197.9
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++..
T Consensus 3 ~i~v~nl~k~y--------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~ 72 (240)
T d1g2912 3 GVRLVDVWKVF--------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEK 72 (240)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGG
T ss_pred cEEEEeEEEEE--------CCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCCEEEECCEEecccch
Confidence 58999999999 46789999999999999999999999999999999999653 569999999998742
Q ss_pred -----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHH
Q 006571 226 -----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGE 300 (640)
Q Consensus 226 -----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGq 300 (640)
..+++||||||++.+||.+||+||+.++...+ ..++++.++++.++++.++|++..+. ++++|||||
T Consensus 73 ~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~-----~p~~LSGGq 144 (240)
T d1g2912 73 GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNR-----KPRELSGGQ 144 (240)
T ss_dssp TEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTC-----CGGGSCHHH
T ss_pred hhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcC-----ChhhCCHHH
Confidence 12578999999999999999999999998765 45778889999999999999887765 467999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 301 RKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 301 rqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||+. ++.++||||++|++|+|++.|+
T Consensus 145 kQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 145 RQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999765 999999999965 5789999999999999999999
Q ss_pred hHHHH
Q 006571 380 ASEAM 384 (640)
Q Consensus 380 ~~~~~ 384 (640)
++|+.
T Consensus 224 ~~el~ 228 (240)
T d1g2912 224 PDEVY 228 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.5e-55 Score=442.99 Aligned_cols=220 Identities=27% Similarity=0.475 Sum_probs=197.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++|. .++..+|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 3 ~i~v~nlsk~y~------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~~~~~ 74 (242)
T d1oxxk2 3 RIIVKNVSKVFK------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGK 74 (242)
T ss_dssp CEEEEEEEEEEG------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTE
T ss_pred EEEEEeEEEEEC------CCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC--CCCceEEECCEEeecCch
Confidence 489999999993 245689999999999999999999999999999999999543 569999999998742
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
..|++||||||++.+||++||+|||.|++..+ ..++++.+++++++++.+||.+..|. ++.+||||||
T Consensus 75 ~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~-----~p~~LSGGqk 146 (242)
T d1oxxk2 75 LIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNH-----FPRELSGAQQ 146 (242)
T ss_dssp ESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTS-----CGGGSCHHHH
T ss_pred hhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhC-----ChhhCCHHHH
Confidence 24678999999999999999999999987543 46788888999999999999877665 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|+||||||||+|||+.++.++++.|+++.++ |.|||++|||+. ++.++||||++|++|+|++.|++
T Consensus 147 QRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~G~iv~~g~~ 225 (242)
T d1oxxk2 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKP 225 (242)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred hHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999654 999999999965 57899999999999999999999
Q ss_pred HHHHH
Q 006571 381 SEAMA 385 (640)
Q Consensus 381 ~~~~~ 385 (640)
+++..
T Consensus 226 ~el~~ 230 (242)
T d1oxxk2 226 EDLYD 230 (242)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99863
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-55 Score=439.95 Aligned_cols=221 Identities=25% Similarity=0.410 Sum_probs=196.5
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ .....+|+||||+|++||+++|+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 1 mi~v~nlsk~y~~~----~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~ 74 (240)
T d3dhwc1 1 MIKLSNITKVFHQG----TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSE 74 (240)
T ss_dssp CEEEEEEEEEEECS----SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCH
T ss_pred CEEEEeEEEEeCCC----CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc--ccCCceEEcCeEeeeCCh
Confidence 48999999999432 123468999999999999999999999999999999999653 569999999999842
Q ss_pred ----hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHH
Q 006571 226 ----SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 ----~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+|++||||||++.+++.+||+||+.+++..+ ..++++.++++.++++.+||++..|. ++++||||||
T Consensus 75 ~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~-----~~~~LSGG~~ 146 (240)
T d3dhwc1 75 SELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDS-----YPSNLSGGQK 146 (240)
T ss_dssp HHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSS-----CBSCCCHHHH
T ss_pred hhhhhhhccccccccccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhC-----ChhhCCHHHH
Confidence 34678999999999999999999999988654 34667778899999999999887765 4679999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecCh
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKA 380 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~ 380 (640)
|||+|||||+.+|+||||||||+|||+.++.+|++.|+++.++ |.|||++|||+. ++..+||||++|++|+|++.|++
T Consensus 147 QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEETTEEEEEEET
T ss_pred HHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999999765 999999999965 57789999999999999999999
Q ss_pred HHHH
Q 006571 381 SEAM 384 (640)
Q Consensus 381 ~~~~ 384 (640)
++++
T Consensus 226 ~ei~ 229 (240)
T d3dhwc1 226 SEVF 229 (240)
T ss_dssp TTTT
T ss_pred HHHH
Confidence 9974
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.5e-54 Score=431.87 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=191.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+++|..+ .....+|+||||+|++||++||+||||||||||+++|+|... +++|+|+++|+++..
T Consensus 1 mI~i~nlsk~y~~~----~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~ 74 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMG----EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDD 74 (230)
T ss_dssp CEEEEEEEEEEEET----TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred CEEEEeEEEEeCCC----CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC--CCcceeEECCEEcCcCCh
Confidence 48999999999532 123468999999999999999999999999999999999643 569999999999852
Q ss_pred ----hc-cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCcc-ccccccCccCCcCCHH
Q 006571 226 ----SL-KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERC-QDTMIGGSFVRGVSGG 299 (640)
Q Consensus 226 ----~~-~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~LSGG 299 (640)
.+ +++||||||++.++|.+||+||+.++...+.....+.++..+++.++++.++|++. .+ .++.+||||
T Consensus 75 ~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----~~p~~LSGG 149 (230)
T d1l2ta_ 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN-----HKPNQLSGG 149 (230)
T ss_dssp HHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTT-----CCGGGSCHH
T ss_pred hhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhc-----CChhhCCHH
Confidence 12 35799999999999999999999999876544456778888899999999999753 44 356799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
|||||+|||||+.+|+||||||||+|||+.++.+|++.|+++.++ |+|||++|||+. . .++||||++|++|+|++.|
T Consensus 150 qkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~-a~~~drv~~m~~G~Iv~~g 227 (230)
T d1l2ta_ 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVEREE 227 (230)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH-H-HTTSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH-H-HHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999765 999999999974 3 4799999999999999998
Q ss_pred Ch
Q 006571 379 KA 380 (640)
Q Consensus 379 ~~ 380 (640)
++
T Consensus 228 ~~ 229 (230)
T d1l2ta_ 228 KL 229 (230)
T ss_dssp EC
T ss_pred cC
Confidence 64
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.2e-54 Score=431.44 Aligned_cols=213 Identities=29% Similarity=0.487 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--h
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--S 226 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~ 226 (640)
+|+++||+++| ++ .+|+||||+|++||+++|+||||||||||+|+|+|... +++|+|.++|+++.+ .
T Consensus 1 mi~v~nlsk~y--------~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~ 69 (229)
T d3d31a2 1 MIEIESLSRKW--------KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP 69 (229)
T ss_dssp CEEEEEEEEEC--------SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH
T ss_pred CEEEEEEEEEe--------CC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCCEEEEccEeccccch
Confidence 48999999998 22 48999999999999999999999999999999999653 569999999999863 3
Q ss_pred ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHH
Q 006571 227 LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCI 306 (640)
Q Consensus 227 ~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~I 306 (640)
.+++||||||++.+||++||+|||.|+...+.- . ..+++.++++.++|.+..|.. +.+|||||||||+|
T Consensus 70 ~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~-----~~~LSGG~~QRvai 138 (229)
T d3d31a2 70 EKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRN-----PLTLSGGEQQRVAL 138 (229)
T ss_dssp HHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSC-----GGGSCHHHHHHHHH
T ss_pred hHhcceeeccccccCccccHHHHHHHHHhhccc---c---HHHHHHHHHHHhcchhhHhCC-----hhhCCHHHhcchhh
Confidence 467899999999999999999999999876532 2 134688899999999887754 57899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHH
Q 006571 307 GNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAM 384 (640)
Q Consensus 307 A~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~ 384 (640)
||||+.+|+||||||||+|||+.++.++.+.|+++.+ .|.|||++||++. ++.++||||++|++|++++.|+++++.
T Consensus 139 AraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 139 ARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999999999999999999975 5999999999975 588899999999999999999999985
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.9e-53 Score=428.49 Aligned_cols=220 Identities=28% Similarity=0.480 Sum_probs=195.4
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||++||+||||||||||+++|+|... +++|+|.++|+++..
T Consensus 2 ~Lev~nl~k~y--------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~ 71 (258)
T d1b0ua_ 2 KLHVIDLHKRY--------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRD 71 (258)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEEC
T ss_pred eEEEEEEEEEE--------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc--CCCCCEEECCEEeccCCc
Confidence 48999999999 46789999999999999999999999999999999999543 569999999998741
Q ss_pred --------------hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCc
Q 006571 226 --------------SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGS 291 (640)
Q Consensus 226 --------------~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~ 291 (640)
..+++||||||++.+++.+||.||+.++..... ..+.++.++++.++++.++|.+... ++
T Consensus 72 ~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~----~~ 145 (258)
T d1b0ua_ 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQ----GK 145 (258)
T ss_dssp TTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHH----TS
T ss_pred cchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhh----cc
Confidence 245789999999999999999999998753322 3567788889999999999976432 23
Q ss_pred cCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 292 FVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 292 ~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
++.+|||||||||+|||||+.+|++|||||||+|||+.++.+|++.|++++++|+|||++|||+. ++..+||||++|++
T Consensus 146 ~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~ 224 (258)
T d1b0ua_ 146 YPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ 224 (258)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET
T ss_pred CcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEEEEEEC
Confidence 45789999999999999999999999999999999999999999999999988999999999975 57889999999999
Q ss_pred CeEEEecChHHHHH
Q 006571 372 GSLLYFGKASEAMA 385 (640)
Q Consensus 372 G~iv~~G~~~~~~~ 385 (640)
|+|++.|+++|++.
T Consensus 225 G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 225 GKIEEEGDPEQVFG 238 (258)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999999863
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.5e-52 Score=422.31 Aligned_cols=232 Identities=24% Similarity=0.401 Sum_probs=206.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| ++++||+||||+|++||++||+||||||||||+|+|+|.+. +++|+|.++|+++.+
T Consensus 2 aI~v~nl~k~y--------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~ 71 (238)
T d1vpla_ 2 AVVVKDLRKRI--------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPH 71 (238)
T ss_dssp CEEEEEEEEEE--------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHH
T ss_pred CEEEEeEEEEE--------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECcEecccChH
Confidence 48899999999 57789999999999999999999999999999999999654 569999999999853
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVC 305 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~ 305 (640)
..++.+|||||++.+|+++||.||+.|...++ ..+..+..+.++.+++.++|.+..+.. +++||||||||++
T Consensus 72 ~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lSgG~~qrv~ 143 (238)
T d1vpla_ 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDR-----VSTYSKGMVRKLL 143 (238)
T ss_dssp HHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSB-----GGGCCHHHHHHHH
T ss_pred HHHhhEeEeeeccccCCCccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCCHHHHhhh-----hhhCCHHHHHHHH
Confidence 45788999999999999999999999987665 245667778899999999998887765 4689999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 306 IGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 306 IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||||+.+|+||||||||+|||+.++.++.+.|++++++|+|||++||++. ++..+||||++|++|++++.|+++++.+
T Consensus 144 iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~el~~ 222 (238)
T d1vpla_ 144 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVEELKE 222 (238)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999999999999999999989999999999975 5888999999999999999999999976
Q ss_pred HHHhcCCCCCCCCChHHHHHHh
Q 006571 386 YFSSIGCSPQIAMNPAEFLLDL 407 (640)
Q Consensus 386 ~f~~~g~~~~~~~npad~~~~~ 407 (640)
.|. ..|..+.+.++
T Consensus 223 ~~~--------~~~~~~~f~~~ 236 (238)
T d1vpla_ 223 RYK--------AQNIEEVFEEV 236 (238)
T ss_dssp HTT--------CSSHHHHHHHH
T ss_pred ccC--------CchHHHHHHHh
Confidence 433 24556666554
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-53 Score=426.85 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=182.5
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh----
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK---- 225 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~---- 225 (640)
|+|+||+|+|+ ...+++|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 2 I~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~~ 73 (241)
T d2pmka1 2 ITFRNIRFRYK------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-I-PENGQVLIDGHDLALADPN 73 (241)
T ss_dssp EEEEEEEEESS------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-C-CSEEEEEETTEETTTSCHH
T ss_pred eEEEEEEEEeC------CCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcC-C-CCCCEEEECCEEecccchh
Confidence 79999999983 24567999999999999999999999999999999999954 3 468999999999863
Q ss_pred hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHH-cCCCccccccccCccCCcCCHHHHH
Q 006571 226 SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAI--DVINE-LGLERCQDTMIGGSFVRGVSGGERK 302 (640)
Q Consensus 226 ~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~--~~l~~-lgL~~~~~t~vg~~~~~~LSGGqrq 302 (640)
.+|++|+||+|++.+|+ .||+|||.++.. ..+.++..+..+ .+.+. ..++...++.+|.. +..|||||||
T Consensus 74 ~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g~~LSGGq~Q 146 (241)
T d2pmka1 74 WLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQ-GAGLSGGQRQ 146 (241)
T ss_dssp HHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTT-TTCCCHHHHH
T ss_pred hhhceEEEEecccccCC-ccccccccccCc-----cccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCC-CCccCHHHHH
Confidence 57889999999999996 599999988632 223322222111 11111 24567778888754 5789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHH
Q 006571 303 RVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASE 382 (640)
Q Consensus 303 Rv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~ 382 (640)
||+|||||+++|+|||||||||+||+.++..|++.|+++.+ ++|+|++||+++. .+.||||++|++|+|++.|++++
T Consensus 147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~i~vl~~G~Iv~~G~~~e 223 (241)
T d2pmka1 147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNADRIIVMEKGKIVEQGKHKE 223 (241)
T ss_dssp HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTSSEEEEEETTEEEEEECHHH
T ss_pred HHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC-CCEEEEEECCHHH--HHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999865 8999999999853 47899999999999999999999
Q ss_pred HHH
Q 006571 383 AMA 385 (640)
Q Consensus 383 ~~~ 385 (640)
++.
T Consensus 224 ll~ 226 (241)
T d2pmka1 224 LLS 226 (241)
T ss_dssp HHH
T ss_pred HHh
Confidence 974
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.2e-52 Score=420.55 Aligned_cols=217 Identities=26% Similarity=0.411 Sum_probs=188.9
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++| +++.+|+||||+|++||+++|+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 5 ~~Lev~~l~k~y--------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i~~~~ 74 (240)
T d1ji0a_ 5 IVLEVQSLHVYY--------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKP 74 (240)
T ss_dssp EEEEEEEEEEEE--------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCC
T ss_pred eEEEEeeEEEEE--------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEeccccccccc
Confidence 479999999999 56789999999999999999999999999999999999653 569999999999853
Q ss_pred -h--ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-CCCccccccccCccCCcCCHHHH
Q 006571 226 -S--LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-GLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 -~--~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~t~vg~~~~~~LSGGqr 301 (640)
. .|..++|+||+..+|+.+||+||+.+++..+.+ ++..++.++++++.+ +|.+..+.. +.+||||||
T Consensus 75 ~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSGG~~ 145 (240)
T d1ji0a_ 75 AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQL-----GGTLSGGEQ 145 (240)
T ss_dssp HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSB-----SSSSCHHHH
T ss_pred HHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCc-----hhhCCHHHH
Confidence 1 244599999999999999999999987654322 223444566666665 566666654 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||++||++. ++.++||||++|++|++++.|+++
T Consensus 146 Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~G~iv~~g~~~ 224 (240)
T d1ji0a_ 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGKAS 224 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999988999999999975 578999999999999999999999
Q ss_pred HHH
Q 006571 382 EAM 384 (640)
Q Consensus 382 ~~~ 384 (640)
++.
T Consensus 225 el~ 227 (240)
T d1ji0a_ 225 ELL 227 (240)
T ss_dssp HHH
T ss_pred HHh
Confidence 985
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.4e-52 Score=422.53 Aligned_cols=221 Identities=24% Similarity=0.390 Sum_probs=193.8
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
.|+++||+++| +++++|+||||+|++||++||+||||||||||+|+|+|.+. +++|+|.++|+++..
T Consensus 4 iL~v~nlsk~y--------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~ 73 (254)
T d1g6ha_ 4 ILRTENIVKYF--------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEP 73 (254)
T ss_dssp EEEEEEEEEEE--------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCH
T ss_pred eEEEEEEEEEE--------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc--CCCcEEEECCEeccchhH
Confidence 69999999998 56789999999999999999999999999999999999653 569999999999853
Q ss_pred -h-ccCcEEEEccCCCCCCCCCHHHHHHHHHhccCC----------CCccHHHHHHHHHHHHHHcCCCccccccccCccC
Q 006571 226 -S-LKSKIGFVTQDDVLFPHLTVKETLTYAALLRLP----------NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFV 293 (640)
Q Consensus 226 -~-~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~----------~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 293 (640)
+ .+..|+||||++.+|+.+||.||+.++...+.. ....+++..+++.++++.+++.+..|+. +
T Consensus 74 ~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 148 (254)
T d1g6ha_ 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK-----A 148 (254)
T ss_dssp HHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB-----G
T ss_pred HHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCc-----h
Confidence 2 345699999999999999999999987543211 1123345567788999999998877765 4
Q ss_pred CcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCe
Q 006571 294 RGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGS 373 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~ 373 (640)
..|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++|+|||+++|++. ++.++||||++|++|+
T Consensus 149 ~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~G~ 227 (254)
T d1g6ha_ 149 GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFNGQ 227 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEETTE
T ss_pred hhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEEeCCE
Confidence 689999999999999999999999999999999999999999999999888999999999976 4789999999999999
Q ss_pred EEEecChHHHHH
Q 006571 374 LLYFGKASEAMA 385 (640)
Q Consensus 374 iv~~G~~~~~~~ 385 (640)
|++.|+++|+.+
T Consensus 228 iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 228 IIAEGRGEEEIK 239 (254)
T ss_dssp EEEEEESHHHHH
T ss_pred EEEEecHHHHhh
Confidence 999999998754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.6e-52 Score=423.18 Aligned_cols=219 Identities=29% Similarity=0.472 Sum_probs=182.2
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh---
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--- 225 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--- 225 (640)
+|+++||+|+|+ +.+++|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 1 mle~knvsf~Y~-------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~~ 71 (242)
T d1mv5a_ 1 MLSARHVDFAYD-------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-Q-PTAGEITIDGQPIDNISL 71 (242)
T ss_dssp CEEEEEEEECSS-------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-C-CSBSCEEETTEESTTTSC
T ss_pred CEEEEEEEEECC-------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh-C-CCCCEEEECCEEeccccH
Confidence 489999999982 3457999999999999999999999999999999999854 3 458999999999853
Q ss_pred -hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHH--H-HcCCCccccccccCccCCcCCHHHH
Q 006571 226 -SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVI--N-ELGLERCQDTMIGGSFVRGVSGGER 301 (640)
Q Consensus 226 -~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l--~-~lgL~~~~~t~vg~~~~~~LSGGqr 301 (640)
.+|++||||+|++.+|+. ||+||+.++... ..+.+...+..+... + ...+++..++.+|.. ...||||||
T Consensus 72 ~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-g~~LSGGqk 145 (242)
T d1mv5a_ 72 ENWRSQIGFVSQDSAIMAG-TIRENLTYGLEG----DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGER-GVKISGGQR 145 (242)
T ss_dssp SCCTTTCCEECCSSCCCCE-EHHHHTTSCTTS----CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTT-SBCCCHHHH
T ss_pred HHHHhheEEEccccccCCc-chhhheeccccc----ccchhhHHHHHHHHHhhhhhccCcccccccccCC-CCCCCHHHH
Confidence 578899999999999986 999999875321 122332222221111 1 124566778888754 467999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChH
Q 006571 302 KRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKAS 381 (640)
Q Consensus 302 qRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~ 381 (640)
|||+|||||+++|+|||||||||+||+.++..|++.|+++.+ |+|||++||+++ .+ ..||||++|++|+|++.|+++
T Consensus 146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~i~vl~~G~iv~~G~~~ 222 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLS-TI-VDADKIYFIEKGQITGSGKHN 222 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHH-HH-HHCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999999874 899999999975 34 679999999999999999999
Q ss_pred HHHH
Q 006571 382 EAMA 385 (640)
Q Consensus 382 ~~~~ 385 (640)
|+++
T Consensus 223 eLl~ 226 (242)
T d1mv5a_ 223 ELVA 226 (242)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9985
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-51 Score=419.25 Aligned_cols=221 Identities=29% Similarity=0.478 Sum_probs=185.0
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+|+||+|+|+. .+++.+|+||||+|++||++||+||||||||||+++|+|.+ . +.+|+|.+||+++..
T Consensus 10 g~I~~~nvsf~Y~~-----~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~-~-p~~G~I~i~g~~i~~~~ 82 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPN-----RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY-Q-PTGGQLLLDGKPLPQYE 82 (251)
T ss_dssp CCEEEEEEEECCTT-----STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-C-CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEECCC-----CCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-C-CCcCEEEECCEecchhh
Confidence 36999999999832 23567999999999999999999999999999999999854 3 468999999999853
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHH-----HHHHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKE-----KRAIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.+|++|+||+|++.+|+ .||+||+.++.... ....... ....+.++ +|++..++.++. .+..|||
T Consensus 83 ~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~----~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~-~~~~LSG 154 (251)
T d1jj7a_ 83 HRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQK----PTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDE-AGSQLSG 154 (251)
T ss_dssp HHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSC----CCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCS-SCSSSCH
T ss_pred hHHHHHHhhhccccccccC-cchhhhhhhhhccc----chHHHHHHHHHHHHHHHHHH--hccccchhhHhc-cCccCCh
Confidence 46788999999999996 59999999874321 1222211 12233333 567778888864 4578999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEe
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYF 377 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~ 377 (640)
||||||+|||||+++|+|||||||||+||+.++.+|++.|+++.++ |+|||++||+++ ..+.||||++|++|+|++.
T Consensus 155 GqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~G~iv~~ 232 (251)
T d1jj7a_ 155 GQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEGGAIREG 232 (251)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEETTEEEEE
T ss_pred hHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 899999999975 3577999999999999999
Q ss_pred cChHHHHH
Q 006571 378 GKASEAMA 385 (640)
Q Consensus 378 G~~~~~~~ 385 (640)
|+|+|+++
T Consensus 233 Gt~~eLl~ 240 (251)
T d1jj7a_ 233 GTHQQLME 240 (251)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHHh
Confidence 99999975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8e-52 Score=420.53 Aligned_cols=216 Identities=31% Similarity=0.506 Sum_probs=184.1
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+|+||+|+|+ ...+++|+||||+|++||++||+||||||||||+++|+|.. . +.+|+|.+||+++..
T Consensus 15 g~I~~~nvsf~Y~------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~ 86 (255)
T d2hyda1 15 GRIDIDHVSFQYN------DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-D-VTSGQILIDGHNIKDFL 86 (255)
T ss_dssp CCEEEEEEEECSC------SSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-C-CSEEEEEETTEEGGGSC
T ss_pred CEEEEEEEEEEeC------CCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcC-C-ccccccccCCEEcccCC
Confidence 3699999999983 23568999999999999999999999999999999999854 3 468999999999853
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHc-------CCCccccccccCccCCcC
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINEL-------GLERCQDTMIGGSFVRGV 296 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~t~vg~~~~~~L 296 (640)
.+|++|+||+|++.+|+ .||+|||.|+. + ..+.++ +.++++.. .|++..+|.+|.. ...|
T Consensus 87 ~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~~----~~~al~~~~l~~~i~~lp~gl~t~i~~~-g~~L 155 (255)
T d2hyda1 87 TGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDEE----VVEAAKMANAHDFIMNLPQGYDTEVGER-GVKL 155 (255)
T ss_dssp HHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHHH----HHHHHHHTTCHHHHHTSTTGGGCBCCGG-GTTS
T ss_pred HHHhhheeeeeeccccCCC-CCHHHHHhccC----c-CCCHHH----HHHHHHHhCCHHHHHhccccccchhcCC-CCCc
Confidence 57899999999999996 59999999863 2 123332 22233322 4577889988754 5679
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 297 SGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 297 SGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+ ++|+|++||+++. ...||||++|++|+|++
T Consensus 156 SgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~--~~~~D~ii~l~~G~iv~ 232 (255)
T d2hyda1 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHADKIVVIENGHIVE 232 (255)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHHH--HHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999865 8999999999863 47899999999999999
Q ss_pred ecChHHHHH
Q 006571 377 FGKASEAMA 385 (640)
Q Consensus 377 ~G~~~~~~~ 385 (640)
.|+++|+++
T Consensus 233 ~G~~~eLl~ 241 (255)
T d2hyda1 233 TGTHRELIA 241 (255)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.1e-51 Score=413.25 Aligned_cols=219 Identities=30% Similarity=0.494 Sum_probs=184.6
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+|+||+|+|+ ..++++|+||||+|++||++||+||||||||||+++|+|.. . +.+|+|.+||+++.+
T Consensus 12 g~I~~~nvsf~Y~------~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~-~-p~~G~I~i~g~~i~~~~ 83 (253)
T d3b60a1 12 GDLEFRNVTFTYP------GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-D-IDEGHILMDGHDLREYT 83 (253)
T ss_dssp CCEEEEEEEECSS------SSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-C-CSEEEEEETTEETTTBC
T ss_pred eEEEEEEEEEEeC------CCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc-C-CCccEEEECCcccchhh
Confidence 3699999999983 23567999999999999999999999999999999999854 3 458999999999863
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHH-----HHHHHHHcCCCccccccccCccCCcCCH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKR-----AIDVINELGLERCQDTMIGGSFVRGVSG 298 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSG 298 (640)
.+|++|+||+|++.+|+. |+++|+.++.. ...+.++..+. +.++++. +++..++.++. .+..|||
T Consensus 84 ~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~--l~~gl~t~~~~-~~~~LSG 155 (253)
T d3b60a1 84 LASLRNQVALVSQNVHLFND-TVANNIAYART----EEYSREQIEEAARMAYAMDFINK--MDNGLDTIIGE-NGVLLSG 155 (253)
T ss_dssp HHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHH--STTGGGSBCCT-TSCSSCH
T ss_pred hhhhhheEEEEeeccccCCc-chhhhhhhcCc----ccCCHHHHHHHHHHHhHHHHHHh--ccccchhhhcC-CCCCcCH
Confidence 568889999999999965 99999998632 22333332221 2333433 46677888875 4678999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEec
Q 006571 299 GERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFG 378 (640)
Q Consensus 299 GqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G 378 (640)
||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+ ++|||+|||+++. .+.||+|++|++|+|++.|
T Consensus 156 GqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~v~vl~~G~Iv~~G 232 (253)
T d3b60a1 156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERG 232 (253)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG--TTTCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHHH--HHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 8999999999863 4789999999999999999
Q ss_pred ChHHHHH
Q 006571 379 KASEAMA 385 (640)
Q Consensus 379 ~~~~~~~ 385 (640)
+|+|+++
T Consensus 233 ~~~eLl~ 239 (253)
T d3b60a1 233 THSELLA 239 (253)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=6.4e-51 Score=408.24 Aligned_cols=211 Identities=26% Similarity=0.464 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--hc
Q 006571 150 LKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK--SL 227 (640)
Q Consensus 150 l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~--~~ 227 (640)
|++ ++.+++ ++..+ ||||++. ||+++|+||||||||||+|+|+|.+. +++|+|.+||+++.+ ..
T Consensus 3 l~v-~~~k~~--------g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~ 68 (240)
T d2onka1 3 LKV-RAEKRL--------GNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPE 68 (240)
T ss_dssp EEE-EEEEEE--------TTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTT
T ss_pred EEE-EEEEEE--------CCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCcCCHH
Confidence 555 456665 33333 8999995 68999999999999999999999653 569999999999863 34
Q ss_pred cCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHH
Q 006571 228 KSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIG 307 (640)
Q Consensus 228 ~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA 307 (640)
+++||||||++.+||++||+|||.|+.. ..++.+.++++.++++.+||.+..+. ++++|||||||||+||
T Consensus 69 ~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~-----~~~~LSGG~kQRvaiA 138 (240)
T d2onka1 69 RRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDR-----KPARLSGGERQRVALA 138 (240)
T ss_dssp TSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTC-----CGGGSCHHHHHHHHHH
T ss_pred HcCceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhC-----ChhhCCHHHHHHHHHH
Confidence 6789999999999999999999999742 34677788899999999999887765 4679999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 308 NEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEA-GKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 308 ~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
|||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||++. ++.++||||++|++|++++.|+++|+.+
T Consensus 139 ral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~G~ii~~G~~~el~~ 216 (240)
T d2onka1 139 RALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp HHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence 9999999999999999999999999999999999765 999999999965 5789999999999999999999999963
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7e-46 Score=372.28 Aligned_cols=208 Identities=27% Similarity=0.419 Sum_probs=179.5
Q ss_pred eeEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh--
Q 006571 148 IYLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK-- 225 (640)
Q Consensus 148 ~~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~-- 225 (640)
..|+++||+++ .+|+||||+|++||++||+||||||||||+++|+|. . + .+|+|.++|+++..
T Consensus 2 ~il~~~dv~~~------------~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl-~-~-~~G~I~~~g~~i~~~~ 66 (231)
T d1l7vc_ 2 IVMQLQDVAES------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-T-S-GKGSIQFAGQPLEAWS 66 (231)
T ss_dssp EEEEEEEECCT------------TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS-C-C-CSSEEEESSSBGGGSC
T ss_pred eEEEEECcccC------------ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-C-C-CceEEEECCEECCcCC
Confidence 46899998643 379999999999999999999999999999999994 3 3 47999999998743
Q ss_pred --hccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHH
Q 006571 226 --SLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKR 303 (640)
Q Consensus 226 --~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqR 303 (640)
.++...+|++|+.......++.+++.+.... ..+.+.++++++.++|.+..+.. ++.||||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~-----~~~LSgG~~Qr 133 (231)
T d1l7vc_ 67 ATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRS-----TNQLSGGEWQR 133 (231)
T ss_dssp HHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSB-----GGGCCHHHHHH
T ss_pred HHHHHhhceeeeccccCCccccHHHHhhhccch--------hhHHHHHHHHHHhcCCHhHhCcC-----hhhcCHHHHHH
Confidence 3455689999997765567999999876421 12345678889999998877654 46899999999
Q ss_pred HHHHHHHhh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEE
Q 006571 304 VCIGNEIII-------NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLY 376 (640)
Q Consensus 304 v~IA~aL~~-------~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~ 376 (640)
|+|||+|++ +|+||||||||+|||+.++..+.+.|++++++|+|||+++|++. ++.++||||++|++|++++
T Consensus 134 v~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~~G~iv~ 212 (231)
T d1l7vc_ 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKMLA 212 (231)
T ss_dssp HHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEETTEECC
T ss_pred HHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEE
Confidence 999999997 77999999999999999999999999999989999999999975 5889999999999999999
Q ss_pred ecChHHHH
Q 006571 377 FGKASEAM 384 (640)
Q Consensus 377 ~G~~~~~~ 384 (640)
.|+++|++
T Consensus 213 ~G~~~ev~ 220 (231)
T d1l7vc_ 213 SGRREEVL 220 (231)
T ss_dssp CSBHHHHS
T ss_pred ECCHHHHh
Confidence 99999984
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-45 Score=378.52 Aligned_cols=196 Identities=26% Similarity=0.395 Sum_probs=161.1
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKE 248 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~E 248 (640)
.++||+||||+|++||++||+||||||||||+++|+|.+. +.+|+|.++| +|+||+|++.+|+. ||+|
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g---------~i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RVSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCS---------CEEEECSSCCCCSE-EHHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc--CCCcEEEECC---------EEEEEeccccccCc-eeec
Confidence 4689999999999999999999999999999999999653 4689999998 39999999999985 9999
Q ss_pred HHHHHHhccCCCCccHHHHHHHHHH---HHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 006571 249 TLTYAALLRLPNTLTKQQKEKRAID---VINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSG 325 (640)
Q Consensus 249 nl~~~~~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsg 325 (640)
||.|+.. .........++. ......+++..++.++. ....|||||||||+|||||+++|+||||||||++
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred ccccccc------ccchHHHHHHHHHHhHHHHHhchhhhhhhhhh-hccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 9987632 122221111111 11234566777877764 3467999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecChHHHHH
Q 006571 326 LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGKASEAMA 385 (640)
Q Consensus 326 LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~~~~~~~ 385 (640)
||+.++..+++.+......++|+|++||++. ..+.||||++|++|+|++.|+++|++.
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999998865443445899999999974 457899999999999999999999864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.9e-43 Score=344.14 Aligned_cols=196 Identities=24% Similarity=0.405 Sum_probs=162.7
Q ss_pred eEEEEeEEEEEeeccccccccccceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhcc
Q 006571 149 YLKFTDVTYKVILKGMTSSEEKDILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLK 228 (640)
Q Consensus 149 ~l~~~~vs~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~ 228 (640)
.|+++||+++| +++||+||||+|++||+++|+||||||||||+|+|+|.+. |.+|+|.+||+++. ..+
T Consensus 2 ~lev~~ls~~y---------~~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~-~~~ 69 (200)
T d1sgwa_ 2 KLEIRDLSVGY---------DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT-KVK 69 (200)
T ss_dssp EEEEEEEEEES---------SSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG-GGG
T ss_pred eEEEEEEEEEe---------CCeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc--cCCCEEEECCEehh-Hhc
Confidence 48999999997 3469999999999999999999999999999999999654 56999999999985 457
Q ss_pred CcEEEEccCCCCCCCCCHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHH
Q 006571 229 SKIGFVTQDDVLFPHLTVKETLTYAALLRLPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGN 308 (640)
Q Consensus 229 ~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~ 308 (640)
.+++|+||+..+++.+|++|++.+....+.. ...+ +++.+.++.+++.+.. . .+.+|||||||||+|||
T Consensus 70 ~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~-~-----~~~~LSgG~~qrv~ia~ 138 (200)
T d1sgwa_ 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDLK-K-----KLGELSQGTIRRVQLAS 138 (200)
T ss_dssp GGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCTT-S-----BGGGSCHHHHHHHHHHH
T ss_pred CcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccCH----HHHHHHHHHcCCcccc-c-----ccCcCCCcHHHHHHHHH
Confidence 7899999999999999999999988766532 2222 3456777888775532 2 24589999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEEcC
Q 006571 309 EIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILLGK 371 (640)
Q Consensus 309 aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL~~ 371 (640)
+|+.+|+++||||||+|||+.++..+++.|+++.+++.++|+++|+. ..+||++.+|++
T Consensus 139 al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 139 TLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech----hhhcchhhheee
Confidence 99999999999999999999999999999999876544444444431 257999999875
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.57 E-value=1.6e-16 Score=149.03 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=99.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccC-----CCCCCCCCHHHHHHHHHhccCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQD-----DVLFPHLTVKETLTYAALLRLP 259 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~-----~~l~~~lTV~Enl~~~~~~~~~ 259 (640)
.++|+||||||||||+++|+|.+. +..|.+...+.+....-+ +.++..+. ..+... +..+ .
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~----------~ 67 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKK-RTGFRIITTEGKKKIFSSK-FFTS----------K 67 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC-------CCEEEEEETTCCEEEEEET-TCCC----------S
T ss_pred EEEEECCCCcHHHHHHHHHHhcCC--CCcceEEECCcchHHHHH-hhhhhhhhhhHHHHHHhhh-hhhh----------h
Confidence 378999999999999999999664 457889888776532211 12221111 110000 0000 0
Q ss_pred CCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 006571 260 NTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQ 339 (640)
Q Consensus 260 ~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~ 339 (640)
... ...+. + .....+|+|+++|.++++++..+|++|++|||....+ ....+.+.+.
T Consensus 68 ~~~-------------~~~~~----~-----~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 68 KLV-------------GSYGV----N-----VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp SEE-------------TTEEE----C-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred hhh-------------hhhhc----C-----cchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHH
Confidence 000 00000 0 1113589999999999999999999999999854433 3456666666
Q ss_pred HHHH-CCCEEEEEeCCCCcHHHhccCEEEEEcCCeEEEecC
Q 006571 340 DIAE-AGKTVVTTIHQPSSRLFHKFDKLILLGKGSLLYFGK 379 (640)
Q Consensus 340 ~l~~-~g~TvI~~tH~~~~~i~~~~D~i~vL~~G~iv~~G~ 379 (640)
++.+ .+.|+|+++|+.. ....+|++..+.+|+++.-++
T Consensus 124 ~~l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHHTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred HHhccCCCEEEEEEccHH--HHHhhceEEEEeCCEEEEECC
Confidence 6654 4889999999965 357799999999999987654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=2.8e-09 Score=107.57 Aligned_cols=77 Identities=25% Similarity=0.302 Sum_probs=65.0
Q ss_pred CCcCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEE
Q 006571 293 VRGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLIL 368 (640)
Q Consensus 293 ~~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~v 368 (640)
...+|+|||+.+.++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||++||.|. +.+.+|+++.
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~ 293 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG 293 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEE
Confidence 457999999998887664 346789999999999999999999999999865 678999999975 5688999866
Q ss_pred --EcCC
Q 006571 369 --LGKG 372 (640)
Q Consensus 369 --L~~G 372 (640)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 5566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=5.2e-09 Score=109.53 Aligned_cols=74 Identities=22% Similarity=0.309 Sum_probs=62.8
Q ss_pred CcCCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEEEEE
Q 006571 294 RGVSGGERKRVCIGNEI----IINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKLILL 369 (640)
Q Consensus 294 ~~LSGGqrqRv~IA~aL----~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i~vL 369 (640)
..||||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++..+.-+|+|||+|. +...+|+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 56899999998877544 4577899999999999999999999999988655567999999964 67899998755
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.87 E-value=1.2e-05 Score=77.79 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHHCCCEEEEEeCCC
Q 006571 300 ERKRVCIGNEIIINPSLLFLDEPTSGLDSTTALRIV-QMLQDIAEAGKTVVTTIHQP 355 (640)
Q Consensus 300 qrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~-~~L~~l~~~g~TvI~~tH~~ 355 (640)
|-+|+.-....+.+..++|+||+.+|=|+.....+. ..++.+.+.+..++++||..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~ 157 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF 157 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH
T ss_pred hHHHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeech
Confidence 334444333344566799999999999998776664 44455666688999999984
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=2.3e-05 Score=76.16 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=35.5
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEeCCC
Q 006571 310 IIINPSLLFLDEPTSGLDSTTALRIVQ-MLQDIAEA-GKTVVTTIHQP 355 (640)
Q Consensus 310 L~~~P~iLlLDEPTsgLD~~s~~~i~~-~L~~l~~~-g~TvI~~tH~~ 355 (640)
-+.+..++|+||+.+|=|+.....+.. .++.+..+ +..+|++||..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 344566999999999999999888755 46667654 56788898874
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.50 E-value=0.00012 Score=71.71 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=28.7
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+-|+++.+=+.+|+++.|.|++|+|||||+.-|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 44565554589999999999999999999887773
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=9e-06 Score=74.50 Aligned_cols=33 Identities=24% Similarity=0.224 Sum_probs=29.2
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-+++.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 467788888887 999999999999999999974
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.03 E-value=0.00016 Score=65.03 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.|++++|.||+||||||+.+.|+.++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.00014 Score=66.93 Aligned_cols=25 Identities=44% Similarity=0.767 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999998654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00016 Score=64.65 Aligned_cols=23 Identities=52% Similarity=0.592 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|+|++|||||||++.|...+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998643
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.97 E-value=0.013 Score=54.32 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.2
Q ss_pred ceece-EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 172 ILNGI-TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 172 iL~~v-s~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
-|+++ ++=+++|+++.|.|++|+|||||.--++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45553 3459999999999999999999975443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.00025 Score=68.13 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~ 217 (640)
+|+.++++|+||+|||||+|.|.|.... ..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~--~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC--C-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhh--hccCcc
Confidence 5889999999999999999999985432 246654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.88 E-value=0.0025 Score=61.64 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.1
Q ss_pred HHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC
Q 006571 309 EIIINPSLLFLDEPTS-----GLDSTTALRIVQMLQDIAEA-GKTVVTTIHQ 354 (640)
Q Consensus 309 aL~~~P~iLlLDEPTs-----gLD~~s~~~i~~~L~~l~~~-g~TvI~~tH~ 354 (640)
.-..+|+++++|--+. --|......+++.|+.+++. +.+||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999996543 12666677888888888754 8898888874
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0003 Score=63.05 Aligned_cols=27 Identities=33% Similarity=0.549 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.+.++.|+||+||||||+.+.|+.++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.75 E-value=0.00034 Score=62.62 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=24.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|.++.|+|++||||||+-+.|+-++
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999999654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.73 E-value=0.011 Score=55.66 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=80.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhcc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLR 257 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~ 257 (640)
+=+++|.++.|.||+|+|||||..-++-.... .| ..+.|+.-+ .+..+.........
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~---~~--------------~~~~~is~e------~~~~~~~~~~~~~~ 77 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVENACA---NK--------------ERAILFAYE------ESRAQLLRNAYSWG 77 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TT--------------CCEEEEESS------SCHHHHHHHHHTTS
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH---hc--------------cccceeecc------CCHHHHHHHHHHcC
Confidence 34899999999999999999998877742210 11 123444322 34444444433221
Q ss_pred CCCCccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHH-HhhCCCEEEEeCCCC---CCCHHHHHH
Q 006571 258 LPNTLTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNE-IIINPSLLFLDEPTS---GLDSTTALR 333 (640)
Q Consensus 258 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~a-L~~~P~iLlLDEPTs---gLD~~s~~~ 333 (640)
. ... +.. ..+.....+. ........+. .-.|..+ --.+|++++.|--+. +.+......
T Consensus 78 ~----~~~-------~~~-~~~~~~~~~~-----~~~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~ 139 (242)
T d1tf7a2 78 M----DFE-------EME-RQNLLKIVCA-----YPESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ 139 (242)
T ss_dssp C----CHH-------HHH-HTTSEEECCC-----CGGGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred C----ChH-------HHh-hcCceEEEEe-----ecchhhHHHH-HHHHHHHHHhcCCceeeeecchhhhcCCCHHHHHH
Confidence 1 111 111 1121111110 0111222111 1112222 224789999987544 446666566
Q ss_pred HHHHHHHHH-HCCCEEEEEeCCC---------CcHHHhccCEEEEEcC
Q 006571 334 IVQMLQDIA-EAGKTVVTTIHQP---------SSRLFHKFDKLILLGK 371 (640)
Q Consensus 334 i~~~L~~l~-~~g~TvI~~tH~~---------~~~i~~~~D~i~vL~~ 371 (640)
.+..|.+++ +.+.+++++.|.. ...+...+|-|+.|+.
T Consensus 140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~~ 187 (242)
T d1tf7a2 140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQY 187 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEEE
Confidence 666666655 4588988888742 1124567899988853
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.61 E-value=0.00045 Score=61.99 Aligned_cols=24 Identities=33% Similarity=0.601 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..++|.||+|||||||.+.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00058 Score=64.51 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.|.++.|+||||+|||||++.|.-.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999999999853
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.49 E-value=0.00064 Score=61.22 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=20.9
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|+|++|||||||++-|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 378999999999999999887654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.48 E-value=0.0007 Score=60.56 Aligned_cols=27 Identities=26% Similarity=0.582 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|-.++|.||+||||||+.+.|+-++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.43 E-value=0.00078 Score=59.12 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.8
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEe
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHP 222 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~ 222 (640)
+++.|.||+|||||||.+.|.... .|.+.++..+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~-----~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN-----PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-----TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC-----CCCEEechHH
Confidence 578899999999999999876321 2555555443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.39 E-value=0.0003 Score=67.78 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEE
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSIT 217 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~ 217 (640)
+|..++++|+||+|||||+|.|.|... ...|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhH--hhhcccc
Confidence 478889999999999999999998543 2246664
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.37 E-value=0.00081 Score=68.89 Aligned_cols=28 Identities=25% Similarity=0.608 Sum_probs=23.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
.+.+.++.+++|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3444556699999999999999999985
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00075 Score=60.39 Aligned_cols=24 Identities=46% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
.+.|.||+|+|||||++.++..+.
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999997653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.32 E-value=0.00095 Score=59.15 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCE
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDH 221 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~ 221 (640)
.++.|.||+||||||+.+.|+..+ .+.+.++|.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~-----~~~~~~~~d 35 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGD 35 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEehH
Confidence 478999999999999999999643 344555543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.31 E-value=0.001 Score=59.29 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..++.|.|++||||||+.+.|+.++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999755
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.30 E-value=0.00099 Score=59.83 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|.|++||||||+.+.|+-++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998654
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.26 E-value=0.0009 Score=61.70 Aligned_cols=22 Identities=41% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999984
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.24 E-value=0.00097 Score=59.33 Aligned_cols=21 Identities=43% Similarity=0.608 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+||+||||||+.+.|+-+
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999854
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0012 Score=57.67 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+.|+||+||||||+-+.|+-++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999999654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.0012 Score=60.17 Aligned_cols=22 Identities=59% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++||-||+|||||||.+.|.-.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999853
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.12 E-value=0.00087 Score=61.12 Aligned_cols=26 Identities=42% Similarity=0.452 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.|.++.|+|++||||||+-+.|+-++
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.98 E-value=0.0011 Score=60.60 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999873
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.98 E-value=0.0016 Score=61.51 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.97 E-value=0.0017 Score=59.66 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHc
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..+++|+||+||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999995
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.96 E-value=0.0014 Score=59.29 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-++|+|++|+|||||+|.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.95 E-value=0.0016 Score=59.95 Aligned_cols=22 Identities=45% Similarity=0.779 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|+||||||||||++.|....
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998643
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0022 Score=58.29 Aligned_cols=29 Identities=24% Similarity=0.495 Sum_probs=26.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+=+++|+++.|.||+|+|||||..-++..
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999888753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.002 Score=57.95 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0021 Score=59.09 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
..+.|+||||+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999998853
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.85 E-value=0.0024 Score=58.88 Aligned_cols=23 Identities=43% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|||||||+|.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0022 Score=57.69 Aligned_cols=22 Identities=45% Similarity=0.738 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|+|.+|+|||||+|.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.78 E-value=0.00058 Score=64.64 Aligned_cols=45 Identities=24% Similarity=0.206 Sum_probs=32.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCCh
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSK 225 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~ 225 (640)
++|-++.|.|.||||||||.+.|.-++......-.+.++|..+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 678899999999999999999998443210001246788776543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.73 E-value=0.0025 Score=57.67 Aligned_cols=22 Identities=45% Similarity=0.661 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+++|+|++|+|||||+|.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0023 Score=59.20 Aligned_cols=20 Identities=55% Similarity=0.821 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+||||||||||.+.|.-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999975
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0026 Score=58.54 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-.++.|+||+||||||+.+.|+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999964
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0026 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999853
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.67 E-value=0.0025 Score=57.87 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+||+|++|+|||||+|.|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999984
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0029 Score=55.87 Aligned_cols=25 Identities=40% Similarity=0.687 Sum_probs=21.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|=.++|+|++|+|||||+|.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3358899999999999999999853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.63 E-value=0.002 Score=59.38 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.+.++.|+||+||||||+.+.|+-.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999963
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.62 E-value=0.0026 Score=55.65 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999863
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.61 E-value=0.0018 Score=58.72 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+||+|.+|+|||||+|.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999973
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.61 E-value=0.0019 Score=57.90 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|||||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.57 E-value=0.0033 Score=57.52 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
++|-.+.|+||+||||||+.+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 3566788999999999999999995
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.56 E-value=0.0028 Score=55.76 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|+|++|+|||||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998753
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.50 E-value=0.35 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+..+++|.|..|.|||||.+.+..
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.49 E-value=0.0032 Score=56.43 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.|+|++||||||+-+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0034 Score=57.48 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.|+||+||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999985
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0035 Score=58.48 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=31.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~ 241 (640)
++||-|++|||||||.+.|+-.+... + + ......+..+++|+.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~---~--------~-~~~~~~~~vi~~D~yy~ 48 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN---E--------V-DYRQKQVVILSQDSFYR 48 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG---G--------S-CGGGCSEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh---c--------c-ccCCCceEEEecccccc
Confidence 68999999999999999998644211 0 0 11234577888887654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.39 E-value=0.0035 Score=56.50 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.|+||+||||||+.+.|+-.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.38 E-value=0.0037 Score=56.10 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++.|.|++||||||+.+.|+.++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 367789999999999999999765
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.38 E-value=0.0032 Score=57.62 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|+||+||||||+.+.|+-.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999853
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.26 E-value=0.038 Score=56.86 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCcHHHhccCEE
Q 006571 305 CIGNEIIINPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSSRLFHKFDKL 366 (640)
Q Consensus 305 ~IA~aL~~~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~~i~~~~D~i 366 (640)
+|..+|=.+|++++..|.. |+.++...+ +.+..|+.|+.+.|-.+. ....+|+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~Rl 271 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTRL 271 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCch--Hhhhhhh
Confidence 4555677899999999997 566655444 445679999999998653 4555553
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.24 E-value=0.0043 Score=55.80 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+.|+|++||||||+-+.|+-++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999998543
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.17 E-value=0.0045 Score=59.21 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
...+.|.||+|||||||.+.|++.+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~ 56 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEET 56 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999855
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.17 E-value=0.0044 Score=55.07 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 3789999999999999999974
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.0023 Score=57.50 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++++|||||+|.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999873
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.14 E-value=0.0051 Score=55.85 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|+||+||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999964
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.13 E-value=0.0048 Score=55.21 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.|+|++||||||+-+.|+-++
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4577999999999999999654
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.13 E-value=0.005 Score=57.40 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.||+||||||+-+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999643
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.11 E-value=0.0052 Score=56.37 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+++++|.+|||||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999953
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.03 E-value=0.0057 Score=55.59 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHH
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 344799999999999999999886
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.96 E-value=0.006 Score=56.44 Aligned_cols=23 Identities=43% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|.||+||||||+-+.|+.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.89 E-value=0.0056 Score=56.61 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.85 E-value=0.0059 Score=55.47 Aligned_cols=20 Identities=40% Similarity=0.609 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
+||+|+..||||||+|.|.|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 89999999999999999997
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.0063 Score=54.97 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+.|+||+||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.83 E-value=0.0065 Score=54.96 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.|+||+||||||+-+.|+-.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999953
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.82 E-value=0.002 Score=56.90 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||+|.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999984
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.76 E-value=0.0051 Score=56.27 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-+++|-|+.||||||+++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999999644
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.73 E-value=0.0064 Score=58.96 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999964
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.71 E-value=0.0078 Score=56.17 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+=+++|+++.|.||+|||||||.--++-
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3599999999999999999999987763
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.70 E-value=0.0067 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.58 E-value=0.0076 Score=55.00 Aligned_cols=21 Identities=38% Similarity=0.692 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++||.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999973
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.53 E-value=0.0085 Score=54.28 Aligned_cols=21 Identities=43% Similarity=0.703 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.|+||+||||||+.+.|+-.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999963
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.49 E-value=0.0087 Score=55.04 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+||+||||||+-+.|+-.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999963
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.44 E-value=0.0088 Score=53.14 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3679999999999999988764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.0067 Score=57.04 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.+++|-|+-||||||+++.|+..+
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999765
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.29 E-value=0.01 Score=55.51 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.|-+++|-|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999998644
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.01 Score=59.78 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=22.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
...-.+||.||+|||||||++.|..
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHH
Confidence 3467899999999999999999985
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.18 E-value=0.012 Score=54.66 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.+++|-|+.||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.012 Score=52.69 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.04 E-value=0.014 Score=55.40 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.|.||+|+||||+.++|+..
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999963
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.03 E-value=0.015 Score=54.62 Aligned_cols=27 Identities=33% Similarity=0.587 Sum_probs=23.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
+=+++|+++.|.||+|||||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 358999999999999999999977554
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.03 E-value=0.015 Score=53.99 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.2
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+=+++|+++.|.|++|+|||||.--++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4599999999999999999999888774
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.00 E-value=0.01 Score=53.00 Aligned_cols=22 Identities=41% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999763
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.99 E-value=0.013 Score=55.49 Aligned_cols=24 Identities=13% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+..+.|.||+|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 567899999999999999998874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.96 E-value=0.013 Score=52.40 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++++|++|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=93.93 E-value=0.0071 Score=60.79 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=25.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..-++.|.-+.|.||.||||||||+.|.+.+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhc
Confidence 3345666778999999999999999999754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.91 E-value=0.013 Score=54.92 Aligned_cols=21 Identities=43% Similarity=0.588 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.|.||+|+|||||.++|+..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999963
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.90 E-value=0.015 Score=54.53 Aligned_cols=25 Identities=36% Similarity=0.542 Sum_probs=21.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+.+++++||+|+||||.+-=|+-+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999987777743
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.012 Score=52.32 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988864
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.76 E-value=0.014 Score=52.31 Aligned_cols=21 Identities=38% Similarity=0.689 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.71 E-value=0.015 Score=54.76 Aligned_cols=21 Identities=43% Similarity=0.782 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999964
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.69 E-value=0.013 Score=60.44 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+||+|.+|+|||||+|.|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999953
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.017 Score=54.09 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+=+++|+++.|.||+|||||||.-.++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999999999887763
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.68 E-value=0.016 Score=54.83 Aligned_cols=21 Identities=38% Similarity=0.751 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 599999999999999999987
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.63 E-value=0.016 Score=51.39 Aligned_cols=20 Identities=15% Similarity=0.464 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.55 E-value=0.017 Score=57.91 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
..-.++|.||+|||||||+..|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 456899999999999999999985
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.49 E-value=0.016 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|+.-+.++||+|+|||.|.|+|+..+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 33455689999999999999999743
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.019 Score=51.94 Aligned_cols=21 Identities=43% Similarity=0.591 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999863
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.019 Score=53.83 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=24.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLM 208 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~ 208 (640)
+|.+++|=|+-||||||+.+.|+-++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999997653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.44 E-value=0.017 Score=54.45 Aligned_cols=21 Identities=48% Similarity=0.809 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.+.||+|+||||+.++|++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999974
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.016 Score=51.40 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999999765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.42 E-value=0.019 Score=53.29 Aligned_cols=20 Identities=50% Similarity=0.808 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~ 204 (640)
++||.|+.||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999997
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.39 E-value=0.017 Score=51.28 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++++|++|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.02 Score=50.89 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998775
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.019 Score=53.68 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.|-||+|+|||||+++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 679999999999999999964
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.019 Score=51.35 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|++|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 77999999999999998775
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.24 E-value=0.025 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.353 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 183 GEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 183 Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+++++||+|+||||.+-=|+-++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999888888543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.019 Score=57.11 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=32.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPH 243 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~ 243 (640)
++||-|++||||||+.+.|...+.... . ...+..+++|+.+.++
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-~--------------~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-E--------------HRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-T--------------CCCEEEEEGGGGBCCH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-C--------------CCceEEEeeeeeECCc
Confidence 889999999999999999986442110 1 1347888999887753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.024 Score=50.63 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.022 Score=50.71 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++|+|++|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.019 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999997765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.07 E-value=0.022 Score=50.46 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.02 Score=50.99 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988863
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.99 E-value=0.023 Score=51.30 Aligned_cols=20 Identities=40% Similarity=0.709 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.90 E-value=0.031 Score=50.14 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 179 SVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 179 ~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
..+||.+++|-|+=|||||||.|.++.-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~ 56 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhh
Confidence 3479999999999999999999999853
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.89 E-value=0.027 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
..+.|.||+|+||||+++.|+..+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.84 E-value=0.025 Score=49.83 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|..|+|||||++-+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.025 Score=50.11 Aligned_cols=21 Identities=29% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999888753
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.81 E-value=0.015 Score=52.36 Aligned_cols=21 Identities=38% Similarity=0.562 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999998864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.77 E-value=0.024 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEECCCCCcHHHHHHHHHcC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.-+.+.||+|+|||+|.+.|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 34779999999999999999963
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.028 Score=52.15 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++||.|+.||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.72 E-value=0.03 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+..-+.+.||+|+|||+|.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHH
Confidence 3345779999999999999999963
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.026 Score=49.75 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.65 E-value=0.015 Score=57.37 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=17.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++||-|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999998543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.034 Score=52.35 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=55.4
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
+-.+++++||+|+||||.+-=|+-++. .. .++|+++.=|..-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~---~~--------------~~kV~lit~Dt~R~-------------------- 52 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV---DE--------------GKSVVLAAADTFRA-------------------- 52 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH---HT--------------TCCEEEEEECTTCH--------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---HC--------------CCceEEEeeccccc--------------------
Confidence 345899999999999998777775432 11 23577776553110
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDSTT 330 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~~s 330 (640)
...+..+.+.+.++++-.... .+-.--.-.+-..+.+...+-+++|.| |+|..+..
T Consensus 53 ----gA~eQL~~~a~~l~i~~~~~~-------~~~d~~~~~~~~~~~~~~~~~d~ilID--TaGr~~~d 108 (213)
T d1vmaa2 53 ----AAIEQLKIWGERVGATVISHS-------EGADPAAVAFDAVAHALARNKDVVIID--TAGRLHTK 108 (213)
T ss_dssp ----HHHHHHHHHHHHHTCEEECCS-------TTCCHHHHHHHHHHHHHHTTCSEEEEE--ECCCCSCH
T ss_pred ----chhHHHHHHhhhcCccccccC-------CCCcHHHHHHHHHHHHHHcCCCEEEEe--ccccccch
Confidence 112234445555666422110 001111233344556677899999999 55655554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.027 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++++|..|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988763
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.61 E-value=0.024 Score=51.73 Aligned_cols=21 Identities=48% Similarity=0.642 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|+.|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987753
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.57 E-value=0.033 Score=49.78 Aligned_cols=21 Identities=43% Similarity=0.812 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|.+|+|||||++.+.+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999999874
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.56 E-value=0.031 Score=51.13 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++|-|+-||||||+++.|..++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.55 E-value=0.023 Score=59.35 Aligned_cols=45 Identities=22% Similarity=0.466 Sum_probs=29.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDD 238 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~ 238 (640)
=+.++||+|+|||-|.+.|++.+. .| -+..+....+ ..|||-.|-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~-VP---Fv~~daT~fT-----eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN-AP---FIKVEATKFT-----EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT-CC---EEEEEGGGGC---------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC-CC---EEEeecceee-----ecceeecch
Confidence 467999999999999999998654 33 2444544332 378887763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.55 E-value=0.029 Score=49.73 Aligned_cols=20 Identities=25% Similarity=0.582 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999875
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.52 E-value=0.056 Score=49.29 Aligned_cols=32 Identities=31% Similarity=0.290 Sum_probs=26.0
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
.|+..-..+ .|.-+.|.|+||+|||||.-.|.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 456555555 78899999999999999987776
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.031 Score=49.49 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|.+|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=0.035 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++++||+|+||||.+-=|+-++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999887777543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.031 Score=49.99 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999988764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.029 Score=49.97 Aligned_cols=20 Identities=30% Similarity=0.630 Sum_probs=18.4
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998775
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.20 E-value=0.034 Score=52.25 Aligned_cols=97 Identities=19% Similarity=0.183 Sum_probs=50.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCCCCCCHHHHHHHHHhccCCCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLFPHLTVKETLTYAALLRLPNT 261 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~~~lTV~Enl~~~~~~~~~~~ 261 (640)
.-.+++++||+|+||||.+-=|+-++. .. .++|++|.=|..-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~---~~--------------g~kV~lit~Dt~R~-------------------- 53 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK---KK--------------GFKVGLVGADVYRP-------------------- 53 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH---HT--------------TCCEEEEECCCSSH--------------------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---HC--------------CCceEEEEeecccc--------------------
Confidence 446799999999999998777774331 11 23577777653211
Q ss_pred ccHHHHHHHHHHHHHHcCCCccccccccCccCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 006571 262 LTKQQKEKRAIDVINELGLERCQDTMIGGSFVRGVSGGERKRVCIGNEIIINPSLLFLDEPTSGLDS 328 (640)
Q Consensus 262 ~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSGGqrqRv~IA~aL~~~P~iLlLDEPTsgLD~ 328 (640)
...+..+..-+.+|++-..- .....+.- .. +=++..+...+-+++|.| |+|..+
T Consensus 54 ----ga~eQL~~~a~~l~v~~~~~-----~~~~~~~~-~~-~~a~~~~~~~~~d~IlID--TaGr~~ 107 (211)
T d1j8yf2 54 ----AALEQLQQLGQQIGVPVYGE-----PGEKDVVG-IA-KRGVEKFLSEKMEIIIVD--TAGRHG 107 (211)
T ss_dssp ----HHHHHHHHHHHHHTCCEECC-----TTCCCHHH-HH-HHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred ----chhHHHHHhccccCcceeec-----ccchhhhH-HH-HHHHHHhhccCCceEEEe--cCCcCc
Confidence 11222334445566642110 00111211 11 225566677899999999 888644
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.13 E-value=0.034 Score=51.78 Aligned_cols=20 Identities=35% Similarity=0.512 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
+.+-||+|+||||+.++|+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~ 58 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAH 58 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHH
Confidence 56899999999999999985
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.10 E-value=0.023 Score=50.77 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+.|+|++|+|||||++.+.+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 367999999999999999875
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.04 E-value=0.034 Score=53.37 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.+.||+|+|||+|.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 679999999999999999974
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.04 E-value=0.036 Score=49.18 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997665
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.02 E-value=0.032 Score=54.05 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=22.8
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+++..-+.|.||+|+|||+|.+.|++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 3344457799999999999999999843
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.00 E-value=0.037 Score=49.17 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998863
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.034 Score=49.69 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998775
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.94 E-value=0.04 Score=49.62 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999988764
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.91 E-value=0.024 Score=50.68 Aligned_cols=20 Identities=50% Similarity=0.645 Sum_probs=8.5
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987775
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=91.73 E-value=0.029 Score=53.19 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999643
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.04 Score=48.86 Aligned_cols=21 Identities=33% Similarity=0.482 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 368999999999999998885
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.71 E-value=0.034 Score=52.30 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 313 NPSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 313 ~P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
+.+++++||.-. |.......+.+.+.+.. ....+|++++++..
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeeccccc
Confidence 567999999964 77777777666665432 24457888888753
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.66 E-value=0.042 Score=48.77 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.64 E-value=0.079 Score=48.19 Aligned_cols=33 Identities=24% Similarity=0.169 Sum_probs=25.3
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
.|+. ++-.-.|.-++|.|+||+|||||.-.|..
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4454 34455678899999999999999877764
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.58 E-value=0.026 Score=50.40 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=17.8
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999987764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.57 E-value=0.044 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998775
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.043 Score=50.96 Aligned_cols=41 Identities=10% Similarity=0.208 Sum_probs=26.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Q 006571 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPS 356 (640)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~ 356 (640)
.+++++||.- .+....+..+.+.|.+... ...++++++++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~ 140 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH 140 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhccc-ceeeccccCcHH
Confidence 4699999974 6777777777777765432 334455555543
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.36 E-value=0.05 Score=53.43 Aligned_cols=43 Identities=30% Similarity=0.466 Sum_probs=29.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCCCCCCcccEEEECCEeCChhccCcEEEEccCCCCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRLMEPTVGGSITYNDHPYSKSLKSKIGFVTQDDVLF 241 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I~~~G~~~~~~~~~~i~yV~Q~~~l~ 241 (640)
++||-|+.|||||||.+.|.-.+.. . ......+..++.|+...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~--~------------~~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLME--K------------YGGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH--H------------HGGGSCEEEEEGGGGBC
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHH--H------------hCCCcceEeeccCCCCC
Confidence 7899999999999999888643310 0 01134578888888643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.31 E-value=0.051 Score=48.22 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.19 E-value=0.049 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+.|.||+|+|||+|.+.++..
T Consensus 41 iLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred eEEecCCCCCchHHHHHHHHH
Confidence 678999999999999999973
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.08 E-value=0.055 Score=48.80 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~ 204 (640)
.+.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46799999999999999884
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.05 E-value=0.054 Score=49.42 Aligned_cols=22 Identities=36% Similarity=0.586 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999843
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.01 E-value=0.048 Score=53.82 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
+||+|.+-+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999983
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.054 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++++|++|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999977653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.84 E-value=0.054 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHHc
Q 006571 186 LALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G 205 (640)
++|+|.+|+|||||++-+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 88999999999999988775
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.057 Score=47.66 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHHcC
Q 006571 186 LALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++|+|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987753
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.77 E-value=0.055 Score=53.14 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=27.8
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+++- =+.|-.|+..+|+|++|+|||||+..|+-
T Consensus 33 ~ID~-l~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 33 VLDL-ASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp HHHH-HSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred eeee-cccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 4433 35788999999999999999999999984
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.05 Score=53.14 Aligned_cols=34 Identities=41% Similarity=0.615 Sum_probs=27.0
Q ss_pred cceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 171 DILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 171 ~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+|+.++- |=-+++|+||-++|||||||.|.|..
T Consensus 23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHHcCCC---CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 35666543 33589999999999999999999853
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.44 E-value=0.11 Score=46.88 Aligned_cols=33 Identities=27% Similarity=0.179 Sum_probs=25.6
Q ss_pred ceeceEEEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 172 ILNGITGSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 172 iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
-|+. ++-.-.|.=+.|.|+||+|||||.-.|.-
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444 55566788999999999999999866663
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.24 E-value=0.079 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.-+||||||+|.|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999954
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.20 E-value=0.066 Score=49.98 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~ 204 (640)
.+.|+|++|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 46899999999999999875
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.13 E-value=0.063 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.++|+|++|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999877653
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=0.09 Score=50.85 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+=+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6899999999999999999999877764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.94 E-value=0.063 Score=52.63 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+||||.+.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999973
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.88 E-value=0.086 Score=52.22 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHc
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
|...+.++||+|+|||.|.+.|+-
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~ 74 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSK 74 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCcchhHHHHHHHHh
Confidence 444678999999999999999995
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.84 E-value=0.087 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.++|+|.-.||||||+|+|.|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999954
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.75 E-value=0.081 Score=47.50 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=17.9
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999986654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.48 E-value=0.12 Score=48.29 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHHcCC
Q 006571 184 EVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+++|=|+-||||||+++.|.-.+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 478899999999999999999644
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.33 E-value=0.13 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEECCCCCcHHHHHHHHHc
Q 006571 184 EVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 184 e~~aIvGpsGsGKSTLl~~L~G 205 (640)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999974
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.22 E-value=0.12 Score=47.79 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
-+||+|..++|||||++.|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 379999999999999999964
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=88.00 E-value=0.065 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-+.|+||.|+|||||.+.|++.+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iL 52 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALL 52 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHS
T ss_pred eEEEECCCCccHHHHHHHHHHhC
Confidence 47899999999999999999865
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.93 E-value=0.11 Score=50.27 Aligned_cols=20 Identities=55% Similarity=0.738 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~ 204 (640)
-+||+|+.|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999995
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.84 E-value=0.13 Score=45.79 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+.|+|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 368999999999999998864
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.80 E-value=0.12 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
.+||||-+-+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999973
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.79 E-value=0.11 Score=52.43 Aligned_cols=38 Identities=32% Similarity=0.257 Sum_probs=29.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCCCCCCcccEE-EECCEeC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRLMEPTVGGSI-TYNDHPY 223 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~~~~~~~G~I-~~~G~~~ 223 (640)
+++..+.+.||+|+||||+.+.|++.+ +|.+ .+|+-+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~-----~~~~i~in~s~~ 190 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLD 190 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTT
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEECcch
Confidence 677899999999999999999999743 3444 3565544
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.69 E-value=0.12 Score=46.05 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
.+.|+|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 367999999999999998864
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.64 E-value=0.17 Score=50.24 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=22.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
...++| ++.+.||+|+|||.|.+.|++.
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 344444 6667899999999999999984
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.61 E-value=0.15 Score=49.59 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~ 204 (640)
-+||+|+.|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47999999999999999994
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.59 E-value=0.14 Score=48.02 Aligned_cols=21 Identities=48% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 006571 185 VLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G 205 (640)
++.|-|.=||||||||+-|..
T Consensus 5 v~iitGFLGaGKTTll~~lL~ 25 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILN 25 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHH
T ss_pred EEEEeeCCCCCHHHHHHHHHh
Confidence 678999999999999999885
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=86.18 E-value=0.18 Score=46.89 Aligned_cols=47 Identities=13% Similarity=0.161 Sum_probs=38.1
Q ss_pred hhCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 311 IINPSLLFLDEPTSG-LDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 311 ~~~P~iLlLDEPTsg-LD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
+.+.++|++|+--.= =+...+..+..++..+.+.|+.+|+++..+..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~ 142 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQ 142 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGG
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcch
Confidence 568899999987442 35778888999999988889999999988654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.81 E-value=0.2 Score=48.50 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=23.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
+=++.|.++-|.||+|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHH
Confidence 578999999999999999999965555
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.68 E-value=0.24 Score=48.09 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=25.2
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHH
Q 006571 177 TGSVNPGEVLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 177 s~~i~~Ge~~aIvGpsGsGKSTLl~~L~ 204 (640)
=+.+-.|+..+|+|++|+|||||+..++
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHH
Confidence 3678899999999999999999987776
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.50 E-value=0.24 Score=47.89 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=25.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHHc
Q 006571 178 GSVNPGEVLALMGPSGSGKTTLLNLLSG 205 (640)
Q Consensus 178 ~~i~~Ge~~aIvGpsGsGKSTLl~~L~G 205 (640)
+=++.|.++-|-||+|||||||.-.++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 6899999999999999999999988875
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.06 E-value=0.19 Score=51.08 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=17.2
Q ss_pred EEEEECCCCCcHHHHHHHHH
Q 006571 185 VLALMGPSGSGKTTLLNLLS 204 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~ 204 (640)
-+.|+|++|||||++++.|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEeCCCCcHHHHHHHHH
Confidence 48899999999999987554
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.25 E-value=0.25 Score=47.73 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
-+.||||+|.|||+++.-|+-++
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999654
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.08 E-value=0.32 Score=44.36 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 182 PGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 182 ~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
|.=-+||+|.-.+|||||++.|.|..
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 44358999999999999999999854
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.42 E-value=0.3 Score=44.91 Aligned_cols=22 Identities=36% Similarity=0.637 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHcCC
Q 006571 186 LALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 186 ~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+.|+||+|.|||+++.-|+-++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEecCCcccHHHHHHHHHHH
Confidence 5799999999999999999655
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.37 E-value=0.28 Score=45.87 Aligned_cols=42 Identities=12% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCc
Q 006571 314 PSLLFLDEPTSGLDSTTALRIVQMLQDIAEAGKTVVTTIHQPSS 357 (640)
Q Consensus 314 P~iLlLDEPTsgLD~~s~~~i~~~L~~l~~~g~TvI~~tH~~~~ 357 (640)
.+++|+||.=. |+..++..+++.+.+-. .+..+|++++++..
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~ 157 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQK 157 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCC-CCeEEEEEcCCccc
Confidence 45999999954 77777766666654321 24578888888654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.27 E-value=0.3 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcCC
Q 006571 185 VLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
.+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 47789999999999999998654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.05 E-value=0.31 Score=48.05 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=22.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHHcCC
Q 006571 181 NPGEVLALMGPSGSGKTTLLNLLSGRL 207 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTLl~~L~G~~ 207 (640)
+|.-.+.++||+|+|||.|.+.|+-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHHh
Confidence 344467899999999999999999543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=82.05 E-value=0.24 Score=47.31 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=13.2
Q ss_pred EEEEECCCCCcHHHHH
Q 006571 185 VLALMGPSGSGKTTLL 200 (640)
Q Consensus 185 ~~aIvGpsGsGKSTLl 200 (640)
-+.|+|+.||||||.|
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 3579999999999754
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.93 E-value=0.28 Score=47.40 Aligned_cols=26 Identities=35% Similarity=0.612 Sum_probs=18.6
Q ss_pred cccceeceEEEEeCCeEEEEECCCCCcHHHHH
Q 006571 169 EKDILNGITGSVNPGEVLALMGPSGSGKTTLL 200 (640)
Q Consensus 169 ~~~iL~~vs~~i~~Ge~~aIvGpsGsGKSTLl 200 (640)
.+.|+++. .|- +.|.|+.||||||.|
T Consensus 16 Q~~~v~~~-----~g~-~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 16 QQEAVRTT-----EGP-LLIMAGAGSGKTRVL 41 (318)
T ss_dssp HHHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred HHHHHhCC-----CCC-EEEEecCCccHHHHH
Confidence 34566653 344 668999999999765
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.29 E-value=0.41 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.675 Sum_probs=21.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHHcC
Q 006571 180 VNPGEVLALMGPSGSGKTTLLNLLSGR 206 (640)
Q Consensus 180 i~~Ge~~aIvGpsGsGKSTLl~~L~G~ 206 (640)
++++. +.++||+|+|||-|.|.|+-.
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcc-eeeeCCCCccHHHHHHHHHhh
Confidence 45565 457899999999999999954
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.10 E-value=0.37 Score=47.39 Aligned_cols=19 Identities=53% Similarity=0.858 Sum_probs=17.0
Q ss_pred eCCeEEEEECCCCCcHHHH
Q 006571 181 NPGEVLALMGPSGSGKTTL 199 (640)
Q Consensus 181 ~~Ge~~aIvGpsGsGKSTL 199 (640)
+.|++..+.|.||+|||||
T Consensus 12 ~~~~~alfFGLSGTGKTTL 30 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTL 30 (313)
T ss_dssp TTSCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEEccCCCCcccc
Confidence 4688999999999999995
|