Citrus Sinensis ID: 006577

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKICSF
cccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHccccEEEEcHHHHHHHcccccEEEEcccHHHccccHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEcccccccccc
ccccccccccEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHcccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEHHHcccccccccccccHcccccccccHHHHHHHHHHHHHccEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHcEEEEcHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEcEEEcccccccccccccccccHHEEEccccccccccHEEEEEEEccccccccHHHHccccHccccEcccEEEEEcc
mdsrrssralidpkvrqvgfftnaplppdrtqsdppdpihstpladasspgnflspvmippprhpsssllprlphspsdafpppsptttttttslgdfsddvtaassppSAAAAAARVrgrgssvkqqgaassfpgggfevppsvkapssvpasglttvsvvklppgisenaggsvsVEVQsdralnskplkekTSKAERRAIQEAQRAAKAAAKAEgiktpaatalanakptkstrpspqrndspvVVAAsekkggdrsvekdrkkdvphprmqyddksrVQKLkkrsvvkptearNRVELFrhlpqyehgtqlpvlqskffqldtlhpaVYKVGLQylsgdicggNARCIAMLQAFQEAIRdystppaktlsrDLTAKISSYVSFlidcrplsvsMGNAIRFLKSQIAkipislsesEAKATLHSDIERFINEKIILADRVIVKHAVTkirdgdvlltyGSSSAVEMILQHAHELGKQFRVVIvdsrpkheGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASsvlsngtvcsRVGTACVAMVAYGFHIPVLVCCeaykfhervqldsicsnelgmhsknmgtpntsfRTHALWLLIQVSCLQVILIPFqrflgertsitwmagtrVKICSF
mdsrrssralidpkvrqvgFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLppgisenaggsvsvevqsdralnskplkektskaERRAIQEAQRAAKAAakaegiktpaatalanakptkstrpspqrndspvvvaasekkggdrsvekdrkkdvphprmqyddksrvqklkkrsvvkptearnrVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINekiiladrvIVKHAvtkirdgdvLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRflgertsitwmagtrvkicsf
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIppprhpsssllprlphspsDAFpppsptttttttsLGDFSDDVTaassppsaaaaaarvrgrgssvKQQGAASSFPGGGFEvppsvkapssvpasGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSkaerraiqeaqraakaaakaeGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEgklllrrlvrkglSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKICSF
***********************************************************************************************************************************************************************************************************************************************************************************************************VELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHS**MGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKIC**
**********IDPKVRQVGFFT**************************************************************************************************************************************************************************************************************************************************************************************ELFRHLPQYE**********KFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKICSF
********ALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPS*************TTSLGDFSDDVT*******************************PGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL***************************IKTPAATA********************************************HPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKICSF
********ALIDPKVRQVGFFTNA*******************************PVMIPP**HPSSSLLPRLPHSPSD******************************************************************************************************************************************************************************************************DKSRVQKLKKR*********NRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKICSF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPNTSFRTHALWLLIQVSCLQVILIPFQRFLGERTSITWMAGTRVKICSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query640 2.2.26 [Sep-21-2011]
P41111523 Translation initiation fa yes no 0.55 0.673 0.446 5e-84
Q61749524 Translation initiation fa yes no 0.589 0.719 0.424 5e-83
Q3T058524 Translation initiation fa yes no 0.551 0.673 0.455 6e-83
Q9UI10523 Translation initiation fa yes no 0.548 0.671 0.451 5e-82
Q63186524 Translation initiation fa yes no 0.551 0.673 0.439 7e-82
Q54FM3619 Translation initiation fa yes no 0.498 0.515 0.464 2e-76
Q09924467 Probable translation init yes no 0.415 0.569 0.488 3e-74
P12754651 Translation initiation fa yes no 0.429 0.422 0.425 2e-57
Q57586308 Putative translation init yes no 0.321 0.668 0.271 5e-21
Q8U4G6324 Putative translation init yes no 0.348 0.688 0.281 7e-20
>sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 Back     alignment and function desciption
 Score =  312 bits (799), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 175/392 (44%), Positives = 238/392 (60%), Gaps = 40/392 (10%)

Query: 197 KAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKG 256
           +AERRA QEA+RA K A K E                    P PQ + S    A     G
Sbjct: 100 RAERRAKQEAERALKQARKGE-----------------QGGPPPQASPS---TAGEAPAG 139

Query: 257 GDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEAR----NRVELFRHLPQYEHG 312
           G R  E            Q DD + +++L ++S  +    R    ++V LF HLPQY   
Sbjct: 140 GKRLTE----------HTQADDPTLLRRLVRKSERQQVPTRKDYGSKVSLFSHLPQYSRQ 189

Query: 313 TQLPVLQSKFFQL--DTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370
             L    +++  +    +HPA+ ++GLQY  G I G NARCIA+L+A Q+ I+DY+TPP 
Sbjct: 190 NSL----TQYMSIPSSVIHPAMVRLGLQYSQGLISGSNARCIALLRALQQVIQDYTTPPN 245

Query: 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIE 430
           + LSRDL  K+  Y+ FL  CRPLS SM NAI+FL  +I  +  +  E EAKA L +  +
Sbjct: 246 EELSRDLVNKLKPYICFLTQCRPLSASMYNAIKFLNKEITGVSSTKREEEAKAELQAAAD 305

Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490
           R++ EKI+LA + I++ A  KI +GDV+L YG SS V  ILQ A   G++FRVV+VDSRP
Sbjct: 306 RYVQEKIVLAAQAILRFASKKISNGDVILVYGCSSLVSRILQEAWSEGRKFRVVVVDSRP 365

Query: 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM 550
           + EG+ +LR LVR G+  +Y  I A SY++ EV++V LGA ++L+NG+V SRVGTA +A+
Sbjct: 366 RLEGRHMLRFLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLAL 425

Query: 551 VAYGFHIPVLVCCEAYKFHERVQLDSICSNEL 582
           VA   ++PVLVCCE YKF ERVQ D+  SNEL
Sbjct: 426 VARAHNVPVLVCCETYKFCERVQTDAFVSNEL 457
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Oryctolagus cuniculus (taxid: 9986)
>sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2 Back     alignment and function description
>sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 Back     alignment and function description
>sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 Back     alignment and function description
>sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 Back     alignment and function description
>sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 Back     alignment and function description
>sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 Back     alignment and function description
>sp|P12754|EI2BD_YEAST Translation initiation factor eIF-2B subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD2 PE=1 SV=1 Back     alignment and function description
>sp|Q57586|EI2B2_METJA Putative translation initiation factor eIF-2B subunit 2 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0122 PE=3 SV=1 Back     alignment and function description
>sp|Q8U4G6|EI2B2_PYRFU Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0122 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query640
224127602634 predicted protein [Populus trichocarpa] 0.862 0.870 0.692 0.0
225451956650 PREDICTED: translation initiation factor 0.870 0.856 0.681 0.0
297801756641 eukaryotic translation initiation factor 0.876 0.875 0.669 0.0
15240967642 translation initiation factor eIF-2B del 0.879 0.876 0.677 0.0
255560374638 translation initiation factor 2b, delta 0.878 0.880 0.684 0.0
255541846664 translation initiation factor 2b, delta 0.879 0.847 0.638 0.0
356551080659 PREDICTED: translation initiation factor 0.890 0.864 0.649 0.0
449440905651 PREDICTED: translation initiation factor 0.879 0.864 0.612 0.0
356567176627 PREDICTED: translation initiation factor 0.865 0.883 0.686 0.0
356573663660 PREDICTED: translation initiation factor 0.889 0.862 0.652 0.0
>gi|224127602|ref|XP_002329318.1| predicted protein [Populus trichocarpa] gi|222870772|gb|EEF07903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  735 bits (1898), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/595 (69%), Positives = 473/595 (79%), Gaps = 43/595 (7%)

Query: 1   MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPD-PIHSTP-----LADASSP--GN 52
           MD RR+ R + DPKVR+VGFFT+   PPDR+   PPD PI S P     + D+S P  GN
Sbjct: 1   MDPRRAPRTVSDPKVRKVGFFTD---PPDRSLWGPPDHPISSFPTSPPSIVDSSPPSAGN 57

Query: 53  FLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPP-SPTTTTTTTSLGDFSDDVTAASSPPSA 111
            LSPVMIPPPRH S++L P L    ++ FPPP SPT ++        SDDV         
Sbjct: 58  SLSPVMIPPPRHSSATLSP-LRRDSAEFFPPPVSPTASS-------LSDDV--------- 100

Query: 112 AAAAARVRGRGSSVKQQGAASSFPGG-GFEVPPSVKAPSSVPASGLTTVSVVKLPPGISE 170
             A+A +R RG +     A+SS PGG GF++     A SSVPASGLTTVSVV     +  
Sbjct: 101 --ASAMMR-RGVA----AASSSLPGGLGFDIAAVKSAASSVPASGLTTVSVVN---NLPI 150

Query: 171 NAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANA 230
             GG V+VE+Q+D++  SK LKEKT+KAERRA+QEAQRAAKAAAKAEG KTPAA + A A
Sbjct: 151 EKGGGVAVEMQNDQSSRSKSLKEKTTKAERRALQEAQRAAKAAAKAEGGKTPAAASGAAA 210

Query: 231 KPTKS--TRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKR 288
               +   +P  Q+NDS   VA SEKKGGDR  EKDRKK+VP PRMQYDDKSRV+K K+R
Sbjct: 211 SAKSAKSVKPPSQKNDS-ATVAVSEKKGGDRPPEKDRKKEVPQPRMQYDDKSRVEKAKRR 269

Query: 289 SVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGN 348
           +VVK TEARNRVELFRHLPQYE  TQL  L+SKFF+LD +HPAVYKVGLQYLSGD+CGGN
Sbjct: 270 AVVKQTEARNRVELFRHLPQYERRTQLTELESKFFELDPMHPAVYKVGLQYLSGDVCGGN 329

Query: 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408
           ARCIAMLQAFQEAI+DYSTP  KTL+RDLTAKI SY+SFLI+CRPLS+SMGNAIRFLK++
Sbjct: 330 ARCIAMLQAFQEAIKDYSTPSEKTLARDLTAKIGSYLSFLIECRPLSISMGNAIRFLKNR 389

Query: 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVE 468
           IAK+P++LSE+E KATLHSDI+RFINEKIILAD+VIVKHAVTKI DGDVLLTYGS SAVE
Sbjct: 390 IAKLPLTLSEAEVKATLHSDIDRFINEKIILADKVIVKHAVTKISDGDVLLTYGSPSAVE 449

Query: 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528
           M+L HAHELGKQFRVV+VDSRPK EG+LLL RLV KG+ CTYTH+NAISYI+HEVTRVFL
Sbjct: 450 MVLLHAHELGKQFRVVVVDSRPKLEGQLLLHRLVGKGIDCTYTHVNAISYIMHEVTRVFL 509

Query: 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELG 583
           GASSVLSNGTV SRVGTACVAMVA+ F +PVLVCCEAYKFHERVQLDS+CSNELG
Sbjct: 510 GASSVLSNGTVYSRVGTACVAMVAHAFRVPVLVCCEAYKFHERVQLDSLCSNELG 564

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225451956|ref|XP_002283177.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297801756|ref|XP_002868762.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] gi|297314598|gb|EFH45021.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240967|ref|NP_198680.1| translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] gi|10176832|dbj|BAB10154.1| unnamed protein product [Arabidopsis thaliana] gi|17064894|gb|AAL32601.1| Unknown protein [Arabidopsis thaliana] gi|31711742|gb|AAP68227.1| At5g38640 [Arabidopsis thaliana] gi|332006961|gb|AED94344.1| translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255560374|ref|XP_002521202.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] gi|223539567|gb|EEF41154.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255541846|ref|XP_002511987.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] gi|223549167|gb|EEF50656.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356551080|ref|XP_003543906.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|449440905|ref|XP_004138224.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] gi|449477110|ref|XP_004154932.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567176|ref|XP_003551797.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|356573663|ref|XP_003554977.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_1230028
hypothetical protein (634 aa)
(Populus trichocarpa)
Predicted Functional Partners:
grail3.0022009302
hypothetical protein (343 aa)
    ••• 0.829
estExt_fgenesh4_pm.C_LG_VIII0284
hypothetical protein (343 aa)
    ••• 0.828
eugene3.00030772
hypothetical protein (464 aa)
    ••• 0.819
estExt_Genewise1_v1.C_290097
hypothetical protein (465 aa)
    ••• 0.818
estExt_fgenesh4_pm.C_LG_XIII0470
SubName- Full=Putative uncharacterized protein; (271 aa)
    ••  0.806
fgenesh4_pg.C_scaffold_1866000002
annotation not avaliable (150 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query640
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 4e-72
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 2e-55
PRK08535310 PRK08535, PRK08535, translation initiation factor 6e-30
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 9e-27
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 1e-17
PRK08335275 PRK08335, PRK08335, translation initiation factor 5e-15
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 7e-11
COG0182346 COG0182, COG0182, Predicted translation initiation 1e-08
PRK06372253 PRK06372, PRK06372, translation initiation factor 3e-07
PRK06371329 PRK06371, PRK06371, translation initiation factor 1e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-06
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 5e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-05
PRK05772363 PRK05772, PRK05772, translation initiation factor 3e-05
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 3e-05
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.002
PRK06036339 PRK06036, PRK06036, translation initiation factor 0.002
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.004
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information 
 Score =  233 bits (597), Expect = 4e-72
 Identities = 86/238 (36%), Positives = 134/238 (56%), Gaps = 5/238 (2%)

Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFL 405
           G  A  IA L+     I+D  TP       +L  ++ S + FLI  RP +VS+GNAI  L
Sbjct: 4   GSPAIAIAALEGLLLVIQDARTPT----VAELKEQLRSAIEFLISARPTAVSLGNAIDRL 59

Query: 406 KSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS 465
              I+++  S    EAK +L    + FI+E I  A R I   A   I+DGD +LT+ +S 
Sbjct: 60  LRIISELHSSSDVEEAKESLIEAADEFIDE-IEEARRKIGAIAAELIKDGDTILTHCNSG 118

Query: 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525
            V  +L+ AH+ GK+FRV++ +SRP+ +G+L  + LV+ G+  T    +A+ Y++ EV +
Sbjct: 119 TVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEVDK 178

Query: 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELG 583
           V +GA  +L+NG + +++GT  +A++A   ++P  V  E YKF  R  LD     E  
Sbjct: 179 VIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEER 236

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 640
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.47
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.4
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.25
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 96.58
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 96.47
PRK13509251 transcriptional repressor UlaR; Provisional 95.98
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 95.95
PRK10411240 DNA-binding transcriptional activator FucR; Provis 95.59
COG1349253 GlpR Transcriptional regulators of sugar metabolis 95.33
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 95.08
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 93.84
PLN02384264 ribose-5-phosphate isomerase 93.68
PRK13978228 ribose-5-phosphate isomerase A; Provisional 92.47
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 87.02
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 85.36
PRK05973237 replicative DNA helicase; Provisional 83.63
PF03853169 YjeF_N: YjeF-related protein N-terminus; InterPro: 81.57
KOG0259 447 consensus Tyrosine aminotransferase [Amino acid tr 80.94
PF01073280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 80.78
TIGR01437363 selA_rel uncharacterized pyridoxal phosphate-depen 80.05
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=8.1e-96  Score=779.61  Aligned_cols=521  Identities=49%  Similarity=0.723  Sum_probs=416.5

Q ss_pred             CCCCCCCC-CCCCCCCcccccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCccccCCCCCcchhh
Q 006577           40 HSTPLADA-SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAA  114 (640)
Q Consensus        40 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (640)
                      +.+...+. .+.+|.++|+|+|++| |.+|.+..++-   ..+.....+..++      ..-.++.+.+  .|.+.   .
T Consensus         6 ~tt~e~s~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~~------~~~~~p~~~t--~s~~~---~   74 (556)
T KOG1467|consen    6 STTDELSPIDKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQGE------DKNAEPKDLT--ASAKQ---A   74 (556)
T ss_pred             ccccccCccchhhhccccccCccccccchHHHHHHHHHhhcCccccccccCCC------ccccCccccc--ccccc---c
Confidence            33444444 5889999999999999 88888887761   1111111111000      0111111222  11111   0


Q ss_pred             hhhhccCCCccccccccccCCCCCCCCCCCcCCCCCCCCCCCeeeeeecCCCCccccCCCCcceeecccccCCCCCcccc
Q 006577          115 AARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEK  194 (640)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (640)
                                  ...+..++|.||+|++...+++   .+.                 .   +..+.+....+.++..+.+
T Consensus        75 ------------~~~~~~s~~~~~~e~t~a~~a~---~~a-----------------~---~s~~~~p~~~~~~ka~~~~  119 (556)
T KOG1467|consen   75 ------------RVAVKASLPKGGAELTVANKAA---AAA-----------------G---SSATQSPKKEKPPKAGLAV  119 (556)
T ss_pred             ------------ccchhhcccCCcceecccccch---hhh-----------------c---cccccCCcccCCccccccc
Confidence                        1455789999999999773222   111                 0   1112222233445667778


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhccCCCCCCCCCCC-CCCCCCccccccccCCCCccccccccCCCCCCC
Q 006577          195 TSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPR  273 (640)
Q Consensus       195 ~~kAERra~Qeaqraak~a~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~~~e~~~~~~~~~~~  273 (640)
                      .|+||||+.||++||+|+++|++++........+.+.+......|. .|.+.+..+...+       +-  .+.++++|.
T Consensus       120 ~t~a~~~a~~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p~~t~~~~-------~~--~~~~~~~pq  190 (556)
T KOG1467|consen  120 PTRAERKAIQEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALPVTTSVDQ-------AL--KRRAVQNPQ  190 (556)
T ss_pred             ccHHHHhhHHHHHHHHHHhhhcccccccccccccccCcccccCCCccccccccccccccc-------hH--Hhhcccchh
Confidence            8999999999999999999999976422111121112222222222 3333232211111       11  567889999


Q ss_pred             CccCcHHHHHHhhhcccccccccCCcceecccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHH
Q 006577          274 MQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIA  353 (640)
Q Consensus       274 ~q~d~~~~~~k~~~~~v~~~~~~~~~V~lf~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraia  353 (640)
                      +|+++..+.. ++|++|..+     +|.||+||||+.+..      ..|..+..|||+|++||+||+.|.|.|+|+|||+
T Consensus       191 ~q~kt~~~~~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa  258 (556)
T KOG1467|consen  191 NQAKTLASAS-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNARCIA  258 (556)
T ss_pred             hhhhhhcccC-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHHHHH
Confidence            9999876655 778888866     799999999998875      2345566699999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCCCccchHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006577          354 MLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFI  433 (640)
Q Consensus       354 ml~Alk~vI~dy~~p~~~t~srdL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi  433 (640)
                      ||.+|+++|+||.+|+++++.|||..+|+.++.||.+|||++++|||||||+|++|..++.+.++.|+|+.|++.|++||
T Consensus       259 ~L~afqevi~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i  338 (556)
T KOG1467|consen  259 MLQAFQEVIKDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFI  338 (556)
T ss_pred             HHHHHHHHHHhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCEEEeecCcHHHHHHHHHHHHcCCeeEEEEcCCCCCchHHHHHHHHHhCCCceEEEec
Q 006577          434 NEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHI  513 (640)
Q Consensus       434 ~E~i~~A~~~Ia~~a~~~I~dgdvILT~g~SstV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~La~eL~~~GI~vTlI~D  513 (640)
                      +|+|..|++.|++++.++|+|||+||||++|++|..+|.+||+.|++|+|+|+||||++||++|++.|.+.||+|||+++
T Consensus       339 ~eki~~A~qaI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I  418 (556)
T KOG1467|consen  339 AEKIILADQAISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLI  418 (556)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhhhccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccCCC
Q 006577          514 NAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGTPN  593 (640)
Q Consensus       514 sAv~~iM~~VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~~g  593 (640)
                      ++++|+|.+|++|||||++|++||.|++++||+++||+|++|||||+||||+|||++|+|+|++++|||+||+++..++|
T Consensus       419 ~a~syim~evtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g  498 (556)
T KOG1467|consen  419 NAASYIMLEVTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRG  498 (556)
T ss_pred             hhHHHHHHhcceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CCcc-----------cCccccccccCCCC--------cccccchh---hhhccccc
Q 006577          594 TSFR-----------THALWLLIQVSCLQ--------VILIPFQR---FLGERTSI  627 (640)
Q Consensus       594 ~~~~-----------~~~~nPaFDVTP~e--------li~iP~s~---~~~~~~~~  627 (640)
                      ....           ...+|-.||+||+|        +++||+++   +++|++..
T Consensus       499 ~~~~~~L~~wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~~~~  554 (556)
T KOG1467|consen  499 REDKVALAGWQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREKKLT  554 (556)
T ss_pred             cchhhhhhccccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhhhcc
Confidence            3221           15678889999995        55779888   88988763

>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05973 replicative DNA helicase; Provisional Back     alignment and domain information
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes Back     alignment and domain information
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query640
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 4e-17
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-16
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 8e-16
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-15
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-15
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-15
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 1e-09
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 1e-07
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 5e-05
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure 
Iteration: 1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 16/224 (7%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
            L + RP +VS+ NA+R++  +  KI  S      + +  + +  + FI+      +R I
Sbjct: 74  ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
            +    +I DGDV++T+  S A   +++ A E GK  +V++ ++RPK +           
Sbjct: 132 GEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564
                Y   +A  + +    +V +GA S+  NG V +++GTA +A+ A    +  ++  E
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251
Query: 565 AYKFHERVQL------------DSICSNELGMHSKNMGTPNTSF 596
            YKFH    L            + I  +EL    KN+   N +F
Sbjct: 252 TYKFHPETMLGQLVEIEMRDPTEVIPEDELKTWPKNIEVWNPAF 295
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query640
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 4e-68
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 1e-26
3a11_A338 Translation initiation factor EIF-2B, delta subun; 2e-23
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 1e-13
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 4e-13
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 3e-12
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  223 bits (571), Expect = 4e-68
 Identities = 57/227 (25%), Positives = 103/227 (45%), Gaps = 5/227 (2%)

Query: 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408
           A  +A ++   E ++       + L  +LT+ I +          ++VS G  +      
Sbjct: 21  ASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGV---DSSVAVSSGGELFLRFIS 77

Query: 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVE 468
           +A +  S   S+ K  +    E F+  +I L+   I     T I+DG  +LT+  S  V 
Sbjct: 78  LASLEYS-DYSKCKKIMIERGELFL-RRISLSRNKIADLCHTFIKDGATILTHAYSRVVL 135

Query: 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528
            +L+ A    K+F V + +S+P   GK + + L    +  T     A+ YI+ +   V +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIV 195

Query: 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLD 575
           GA  V+ NG + +++GT  +A+ A   + P  V  E++KF     L+
Sbjct: 196 GAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPLN 242
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query640
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.92
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.11
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 97.81
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 97.8
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 97.79
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 97.63
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.37
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.35
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.35
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 97.31
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 97.24
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 96.65
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 90.76
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 87.14
3ic5_A118 Putative saccharopine dehydrogenase; structural ge 80.96
3i6i_A 346 Putative leucoanthocyanidin reductase 1; rossmann 80.3
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
Probab=100.00  E-value=1e-66  Score=556.49  Aligned_cols=302  Identities=17%  Similarity=0.214  Sum_probs=279.2

Q ss_pred             Ccceec--ccCCCceecccCcchhhhhhcccchhHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHccCCCCCccchH
Q 006577          298 NRVELF--RHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSR  375 (640)
Q Consensus       298 ~~V~lf--~hLP~~~~~~~l~~~e~~~~ai~~mhPavv~Lgl~~~rGa~~Gsnaraiaml~Alk~vI~dy~~p~~~t~sr  375 (640)
                      ..|.||  +.||+++.|+.|.++++++.+|+.|.   +       ||++.++.++|++|+++++++.....|.    ..+
T Consensus        26 ~~l~ildq~~lP~~~~~~~~~~~~~~~~aIk~m~---V-------rGApaIgiaaa~~l~l~~~~~~~~~~~~----~~~   91 (383)
T 2a0u_A           26 GSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMR---V-------RGAPAIAVSAALGIAVATQRKAANGELK----SGR   91 (383)
T ss_dssp             TEEEEECTTTTTTCCCEEEECSHHHHHHHHHTTS---S-------CSHHHHHHHHHHHHHHHHHHHHHHSSCC----CHH
T ss_pred             CEEEEEecCCCCCceEEEEcCCHHHHHHHHHhCC---C-------CCcHHHHHHHHHHHHHHHHhhcccccCC----CHH
Confidence            469999  99999999999999999999999999   8       9999999999999999999987654442    367


Q ss_pred             HHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 006577          376 DLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIR--  453 (640)
Q Consensus       376 dL~~~L~~~i~~L~~aRPtsvsm~NAIr~lk~~I~~l~~~~~~~eaK~~L~e~Id~fi~E~i~~A~~~Ia~~a~~~I~--  453 (640)
                      +|.+.|+..+++|.++|||++||+|++++|++.++....+.+.+++|+.+++.+++|++|+ ..+++.|+++|+++|.  
T Consensus        92 ~l~~~l~~~~~~L~~aRPtavnL~na~~r~~~~i~~~~~~~~~~~~k~~l~~~a~~i~~e~-~~~~~~I~~~g~~~I~~~  170 (383)
T 2a0u_A           92 EVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTND-VAFNEGIMRHGAAHILAA  170 (383)
T ss_dssp             HHHHHHHHHHHHHTTSCCSCSHHHHHHHHHHHHHHHSCTTSCSHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Confidence            8999999999999999999999999999999999864333467899999999999999996 5799999999999999  


Q ss_pred             ------CCCEEEeecCc--------HHHHHHHHHHHHcCCeeEEEEcCCCCCchHHH-HHHHHHhCCCceEEEechHHHH
Q 006577          454 ------DGDVLLTYGSS--------SAVEMILQHAHELGKQFRVVIVDSRPKHEGKL-LLRRLVRKGLSCTYTHINAISY  518 (640)
Q Consensus       454 ------dgdvILT~g~S--------stV~~vL~~A~e~Gk~f~ViV~ESRP~~eG~~-La~eL~~~GI~vTlI~DsAv~~  518 (640)
                            +|++|||||||        ++|+++|+.|+++|++|+|||+||||++||.+ ++|+|.+.||+||||+|||++|
T Consensus       171 ~~~~~~~g~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qGarltA~eL~~~GIpvtlI~Dsa~~~  250 (383)
T 2a0u_A          171 AKAEGRDKVSILTICNTGALATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASS  250 (383)
T ss_dssp             HHHTTCSSEEEEECSCCSTTTSSSSCSHHHHHHHHHHTTCEEEEEEECCTTTTHHHHTHHHHHHHTTCCEEEECGGGHHH
T ss_pred             ccccCCCCCEEEEecCCcchhcCCCchHHHHHHHHHHcCCeEEEEEeCCCCccchHHHHHHHHHHcCCCEEEEehhHHHH
Confidence                  99999999998        58999999999999999999999999999986 5699999999999999999999


Q ss_pred             Hhhh--ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCcEEEecccccccccccCCCcccccccCccCcccC--CCC
Q 006577          519 IIHE--VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGMHSKNMGT--PNT  594 (640)
Q Consensus       519 iM~~--VdkVlvGADaIlaNG~VvNKiGT~~lAlaAk~~~VPVyV~aetyKf~~~~~~ds~i~nElrdP~Evl~~--~g~  594 (640)
                      +|++  ||+||||||+|++||+++||+|||++|++||+||||||||||+|||++.++.|..+.||+|+|+|++.+  .|.
T Consensus       251 ~M~~~~Vd~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~~~g~  330 (383)
T 2a0u_A          251 LMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIEEREPTEITTNLVTKQ  330 (383)
T ss_dssp             HHHHSCCCEEEECCSEECTTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGBCTTCCSGGGSCCCBCCTHHHHBCTTTCC
T ss_pred             HhhcCCCCEEEECccEEecCCCEeecccHHHHHHHHHHcCCCEEEeCCcceecCcCCCccccccccCCHHHhcccccCCc
Confidence            9998  999999999999999999999999999999999999999999999999999999999999999999987  565


Q ss_pred             Ccc-----cCccccccccCCCCccc
Q 006577          595 SFR-----THALWLLIQVSCLQVIL  614 (640)
Q Consensus       595 ~~~-----~~~~nPaFDVTP~eli~  614 (640)
                      ...     ..++||+|||||++||.
T Consensus       331 ~~a~~~~~v~v~NPaFDvTP~~lIt  355 (383)
T 2a0u_A          331 RVVADGPHLSIWNPVFDITPSELIT  355 (383)
T ss_dssp             BCSCCCTTEEECCBSEEEECGGGCC
T ss_pred             eecCCCCceeeecccccccChHHCC
Confidence            442     46799999999998887
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Back     alignment and structure
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 640
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 3e-39
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 5e-32
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 9e-27
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 9e-21
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 7e-20
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  143 bits (362), Expect = 3e-39
 Identities = 53/209 (25%), Positives = 89/209 (42%), Gaps = 12/209 (5%)

Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
           ++   P   S+ N  RF+             +  +  L S    F+   +  A R +   
Sbjct: 54  VVKVNPSMASLYNLARFI-----------PVTNRRDILKSRALEFLRR-MEEAKRELASI 101

Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
               I DGDV++T+  SS V  I++ A E  K+F+V++ +S P +EG  L R L   G+ 
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161

Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567
                   +     E +   +GA  +  +G V ++ GT  +A+  +   IP  V  E YK
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 221

Query: 568 FHERVQLDSICSNELGMHSKNMGTPNTSF 596
           FH  ++   +   E  +   N+   N  F
Sbjct: 222 FHPTLKSGDVMLMERDLIRGNVRIRNVLF 250
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query640
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 97.07
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.99
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.54
d1a9xa2138 Carbamoyl phosphate synthetase, large subunit allo 83.34
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure