Citrus Sinensis ID: 006594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
Protein Sequence
MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccEEEcccccccccEEEEEEEEcccccccccccEEEEEEccEEEEEEEccccEEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccEEEEEEEEcccccccccccEEEEEEcccEEEEEEccccEEEEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccEEEHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccEEEccccEEEEcccccEEEEEEccccEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccccccccccEEcccccEEEEEEcccEEEEEEEEccccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHcHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHcccHHHcccccHcccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccEEEEcccccccccHcEEEEEEEcccccEccccEEEEEEcccEEEEEccccccEEEEEEEcccccEEEcccEEEEEccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEHHEEEccccEEccccEEEEEEcccEEEEEEcccccEEEEEEEccccEEEccccEEEEEcccccccHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHccccccccEEEHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEcccHHHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHccccccEEcccccEEEEEcEccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEcccEEEEEEccccEEEEEcEEEEEEEccccEEcHHHHHHHHHHHHHHHHcccEEcc
Coil and Loop (DISEMBL)
malsrlrqPVIARTLSLFRARLslssfssstslarissgknsfvdvngillrplsstlapevhdsplklkmqigvrhfssselpshtvvgmpalsptmsqgNIAKWRKkegdkieiGDILCEIETDKATVEFESLEEGFLAKilvpegskdvpvgqpiaitvedaddiqhipatiaggaeakeqssthqdVKKEAVQETSasrintselpprvvlempalsptmnqgNIAKWRknegdkievgDVICEIETDKATLEFECLEEGYlakilapegskdvavgqpiaitvedpgdvgtvknsvtsgaevkgekethhdskdVVKVQkgsftkispSAKLLILEhgldasslqasgpygtllkGDVLAAIKsgkvssrisshtektspsplpqtstavspgsksdlelsdsfedfpnTQIRKVIARRLLEskqntphlylssdvvLDPLLSFRKELKekhntkvsVNDIVIKAVAVALKNvpeanaywdvekgeIVLCDAIDISIAVATEkglmtpivrnadqKSISAISMEVKELAEKARagklaphefqggtfsisnlgmfpvdqfcaiinppqagilavgrgnqvvepvigsdgnetpAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Flexible Loop (DISEMBL)
malsrlrqpvIARTLSLFRARLSlssfssstslarissgknsfVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAeakeqssthqdVKKEAVqetsasrintselpprvVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAItvedpgdvgtvkNSVTSgaevkgekethhdskdvvkvqkgsfTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKvssrisshtektspsplpqtstaVSPGSKSDLelsdsfedfpnTQIRKVIARRLLESkqntphlylssdvVLDPLLSFRKELkekhntkvsvndiVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVAtekglmtpivrnadqkSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVigsdgnetpAVVTKMNLTLSADHRVFEGKVGGAFFSalcsnfsdirrlll
Low Complexity Region (SEG)
MALSRLRQPVIArtlslfrarlslssfssstslarissGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHlylssdvvldpllsFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Disordered region (IsUnstruct)
*********VIARTLSLFRARL*******************SFVDVNGILLRPLSSTL************MQIGV***************************IAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT******************************************************IAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE*********************************************AKLLILEHGLDASSLQASGPYGTLLKGDVLAAI************************************************QIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNA***********************LAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIR****
Disordered Region (DISOPRED)
**********************************************************************************LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDI*****************************ETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED*******************************************SAKLLILEHGLDASSLQASGPYGTLLKGDVLAA*******************************************EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Disordered Region (DISEMBL)
MALSRLRQPVIARTLSLFRARLSLS*************GKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG************************SRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV****************KDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS**********************************ELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Disordered Region (DISPRO)
*****LRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILL*******************************LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD*******************************************PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP**************************************KISPSAKLL***HGLDASSLQASGPYGTLLKGDVLAAIK*****************************************EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	639	2.2.26 [Sep-21-2011]
Q0WQF7	637	Dihydrolipoyllysine-resid	yes	no	0.985	0.989	0.656	0.0
P10515	647	Dihydrolipoyllysine-resid	yes	no	0.834	0.823	0.417	1e-107
Q8BMF4	642	Dihydrolipoyllysine-resid	yes	no	0.830	0.827	0.412	1e-107
P08461	632	Dihydrolipoyllysine-resid	yes	no	0.910	0.920	0.398	1e-107
P36413	635	Dihydrolipoyllysine-resid	yes	no	0.829	0.834	0.381	1e-100
Q8RWN9	539	Dihydrolipoyllysine-resid	no	no	0.644	0.764	0.398	4e-84
Q5M729	539	Dihydrolipoyllysine-resid	no	no	0.638	0.756	0.403	1e-83
O66119	440	Dihydrolipoyllysine-resid	yes	no	0.600	0.872	0.418	2e-81
O59816	483	Dihydrolipoyllysine-resid	yes	no	0.647	0.857	0.420	2e-81
Q1RJT3	418	Dihydrolipoyllysine-resid	yes	no	0.597	0.913	0.410	2e-79

>sp|Q0WQF7|OPD21_ARATH Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=LTA3 PE=1 SV=2

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/646 (65%), Positives = 501/646 (77%), Gaps = 16/646 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSL-ARISSGKNSFVD----VNGILLRPLS 55
           M L   R+  IART SL RARL    F+ ++   +R S+G     D     NG+  R  S
Sbjct: 1   MVLPLFRRAAIARTSSLLRARL----FAPASEFHSRFSNGLYHLDDKISSSNGV--RSAS 54

Query: 56  STLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIE 115
             L   + DS  K  ++ GV++FSS+   S TV+ MPALSPTMS GN+ KW KKEGDK+E
Sbjct: 55  IDLITRMDDSSPKPILRFGVQNFSSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVE 114

Query: 116 IGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATI 175
           +GD+LCEIETDKATVEFES EEGFLAKILV EGSKD+PV +PIAI VE+ DDI+++PATI
Sbjct: 115 VGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDIKNVPATI 174

Query: 176 AGGAEAKEQSSTHQDVK-KEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRK 234
            GG + KE++S HQ +K  E+ Q+ S+ + + S+LPP VVLEMPALSPTMNQGNIAKW K
Sbjct: 175 EGGRDGKEETSAHQVMKPDESTQQKSSIQPDASDLPPHVVLEMPALSPTMNQGNIAKWWK 234

Query: 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
            EGDKIEVGDVI EIETDKATLEFE LEEGYLAKIL PEGSKDVAVG+PIA+ VED   +
Sbjct: 235 KEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESI 294

Query: 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGP 354
             +K+S    +EV   KE      D    +K  FTKISP+AKLLILEHGL+ASS++ASGP
Sbjct: 295 EAIKSSSAGSSEVDTVKEVPDSVVDKPTERKAGFTKISPAAKLLILEHGLEASSIEASGP 354

Query: 355 YGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS-FEDFP 413
           YGTLLK DV+AAI S        S        P  +T +  S  SK  +  SD+ +EDFP
Sbjct: 355 YGTLLKSDVVAAIAS---GKASKSSASTKKKQPSKETPSKSSSTSKPSVTQSDNNYEDFP 411

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRK+IA+RLLESKQ  PHLYL SDVVLDPLL+FRKEL+E H  KVSVNDIVIKAVAV
Sbjct: 412 NSQIRKIIAKRLLESKQKIPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVIKAVAV 471

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV +ANA+WD EKG+IV+CD++DISIAVATEKGLMTPI++NADQKSISAIS+EVKEL
Sbjct: 472 ALRNVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKEL 531

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           A+KAR+GKLAPHEFQGGTFSISNLGM+PVD FCAIINPPQAGILAVGRGN+VVEPVIG D
Sbjct: 532 AQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKVVEPVIGLD 591

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           G E P+VVTKMN+TLSADHR+F+G+VG +F S L SNF D+RRLLL
Sbjct: 592 GIEKPSVVTKMNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 637

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 2

>sp|P10515|ODP2_HUMAN Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLAT PE=1 SV=3

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 244/585 (41%), Positives = 335/585 (57%), Gaps = 52/585 (8%)

Query: 67  LKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETD 126
           L+L    G R++S   LP H  V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETD
Sbjct: 75  LQLLGSPGRRYYS---LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETD 131

Query: 127 KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIP-ATIAGGAEAKEQS 185
           KATV FESLEE ++AKILV EG++DVP+G  I ITV   +DI+     T+   A    Q+
Sbjct: 132 KATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAAPTPQA 191

Query: 186 STHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245
           +        A   T +++   S  PP + + +PALSPTM  G + +W K  G+K+  GD+
Sbjct: 192 APAPTPAATASPPTPSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 251

Query: 246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSG 304
           + EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T  
Sbjct: 252 LAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEV 311

Query: 305 AEVKGEKETHHDSKDVVKVQ--------------------KGSFTKISPSAKLLILEHGL 344
            ++K +                                  KG    +SP AK L +E G+
Sbjct: 312 TDLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGPKGRVF-VSPLAKKLAVEKGI 370

Query: 345 DASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSP--SPLPQTSTAVSPGSKSD 402
           D + ++ +GP G + K D+ + + S KV+   ++    T P  +P+P             
Sbjct: 371 DLTQVKGTGPDGRITKKDIDSFVPS-KVAPAPAAVVPPTGPGMAPVP------------- 416

Query: 403 LELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTK 460
              +  F D P + IR+VIA+RL++SKQ  PH YLS DV +  +L  RKEL +  +  +K
Sbjct: 417 ---TGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSK 473

Query: 461 VSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQ 520
           +SVND +IKA A+A   VPEAN+ W      I     +D+S+AV+T  GL+TPIV NA  
Sbjct: 474 ISVNDFIIKASALACLKVPEANSSW--MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHI 531

Query: 521 KSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVG 580
           K +  I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G
Sbjct: 532 KGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIG 591

Query: 581 RGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
                + P     G +   V + M++TLS DHRV +G VG  + +
Sbjct: 592 ASEDKLVPADNEKGFD---VASMMSVTLSCDHRVVDGAVGAQWLA 633

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8BMF4|ODP2_MOUSE Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlat PE=1 SV=2

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/582 (41%), Positives = 330/582 (56%), Gaps = 51/582 (8%)

Query: 69  LKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA 128
           L+  +G     S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKA
Sbjct: 73  LRQLLGSPSRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKA 132

Query: 129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIP-ATIAGGAEAKEQSST 187
           TV FESLEE ++AKILVPEG++DVPVG  I ITVE   DI+     T+   A A  Q++ 
Sbjct: 133 TVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDLAAAAAPQAAP 192

Query: 188 HQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247
                  A     ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ 
Sbjct: 193 AAAPAPAAAPAAPSASAPGSSYPTHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLA 252

Query: 248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTS 303
           EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS
Sbjct: 253 EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGAPLCIIVEKQEDIAAFADYRPTEVTS 312

Query: 304 GAEVKGEKETHHDSKDVVKVQKGSFTK------------ISPSAKLLILEHGLDASSLQA 351
                        +      Q  + T             +SP AK L  E G+D + ++ 
Sbjct: 313 LKPQAAPPAPPPVAAVPPTPQPVAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKG 372

Query: 352 SGPYGTLLKGDVLAAIKS---GKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS 408
           +GP G ++K D+ + + S      ++ ++    + +P+P                  +  
Sbjct: 373 TGPEGRIIKKDIDSFVPSKAAPAAAAAMAPPGPRVAPAP------------------AGV 414

Query: 409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTKVSVNDI 466
           F D P + IR+VIA+RL++SKQ  PH YLS DV +  +L  RKEL +  +   K+SVND 
Sbjct: 415 FTDIPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDF 474

Query: 467 VIKAVAVALKNVPEANAYWD---VEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
           +IKA A+A   VPEAN+ W    + +  +V     D+S+AV+T  GL+TPIV NA  K +
Sbjct: 475 IIKASALACLKVPEANSSWMDTVIRQNHVV-----DVSVAVSTPAGLITPIVFNAHIKGL 529

Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
             I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G   
Sbjct: 530 ETIASDVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 589

Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
             + P     G +  +V   M++TLS DHRV +G VG  + +
Sbjct: 590 DKLIPADNEKGFDVASV---MSVTLSCDHRVVDGAVGAQWLA 628

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P08461|ODP2_RAT Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlat PE=1 SV=3

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/627 (39%), Positives = 342/627 (54%), Gaps = 45/627 (7%)

Query: 18  FRARL-SLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVR 76
           FRAR  +L    +  +  R  SG  S+  V  +      S   P        L+  +G  
Sbjct: 18  FRARWATLKGPRTGPAAVRCGSGIPSY-GVRSLCGWSYGSATVPRNR----ILQQLLGSP 72

Query: 77  HFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE 136
              S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKATV FESLE
Sbjct: 73  SRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKATVGFESLE 132

Query: 137 EGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAV 196
           E ++AKILVPEG++DVPVG  I ITVE   DI+         A A  Q++        A 
Sbjct: 133 ECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDSATAATQAAPAPAAAPAAA 192

Query: 197 QETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATL 256
               ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+
Sbjct: 193 PAAPSASAPGSSYPVHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATI 252

Query: 257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTSGAEVKGEKE 312
            FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS         
Sbjct: 253 GFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKQEDIAAFADYRPTEVTSLKPQAPPPV 312

Query: 313 THHDSKDVVKVQKGSFTK------------ISPSAKLLILEHGLDASSLQASGPYGTLLK 360
               +      Q  + T             +SP AK L  E G+D + ++ +GP G ++K
Sbjct: 313 PPPVAAVPPIPQPLAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKGTGPEGRIIK 372

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKV 420
            D+ + + +    +  ++       +P P                +  F D P + IR+V
Sbjct: 373 KDIDSFVPTKAAPAAAAAAPPGPRVAPTP----------------AGVFIDIPISNIRRV 416

Query: 421 IARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTKVSVNDIVIKAVAVALKNV 478
           IA+RL++SKQ  PH YLS DV +  +L  RKEL +  +   K+SVND +IKA A+A   V
Sbjct: 417 IAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIKASALACLKV 476

Query: 479 PEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKAR 538
           PEAN+ W      I     +D+S+AV+T  GL+TPIV NA  K +  I+ +V  LA KAR
Sbjct: 477 PEANSSW--MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIASDVVSLASKAR 534

Query: 539 AGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETP 598
            GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G      + +I +D  +  
Sbjct: 535 EGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE---DKLIPADNEKGF 591

Query: 599 AVVTKMNLTLSADHRVFEGKVGGAFFS 625
            V + M++TLS DHRV +G VG  + +
Sbjct: 592 DVASVMSVTLSCDHRVVDGAVGAQWLA 618

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P36413|ODP2_DICDI Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=pdhC PE=1 SV=2

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/571 (38%), Positives = 319/571 (55%), Gaps = 41/571 (7%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE-EGFLAKILVPE 147
           + MPALSP+M++GNI +W+KKEGD+I+ GD++ E+ETDKAT++F+  +  G+LAKIL+PE
Sbjct: 86  ITMPALSPSMTEGNIVQWKKKEGDQIKAGDVIAEVETDKATMDFQYEDGNGYLAKILIPE 145

Query: 148 GSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQ-ETSASRINT 206
           G+K + + +PIAI V   +DI+   + +     + + SST   V++EA + +  A + +T
Sbjct: 146 GTKGIEINKPIAIIVSKKEDIE---SAVKNYKPSSQASST--PVQEEAPKPKQEAPKKST 200

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE-EGY 265
              P   V+ MPALSP+M  G IA W K EGD+I+ GD I E+ETDKAT++F+  +  GY
Sbjct: 201 KTYPAHKVVGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGY 260

Query: 266 LAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKV-- 323
           LAKIL P G+  + + QP+ I V++  D     +             +   +        
Sbjct: 261 LAKILVPGGTSGIQINQPVCIIVKNKEDCDKFADYSVEEQSSSSSSSSQESTPSSSSSSS 320

Query: 324 ---------------QKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
                          + G     +P+A+      G D S++  +GP   +LK DVL  + 
Sbjct: 321 QESTPSQSSSQQTTRKSGERIFATPAARFEASSKGYDLSAINGTGPNNRILKADVLEFV- 379

Query: 369 SGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLES 428
                       +K   +   Q  T  +    +    S  F D P++ IRKV A RL ES
Sbjct: 380 -----------PQKQEVAQQQQQQTTTTTKKPTTPTSSGEFTDIPHSNIRKVTAARLTES 428

Query: 429 KQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE 488
           KQ  PH YL+ +  +D LL  R EL   +  K+SVND ++KA A AL++ P  N+ W  +
Sbjct: 429 KQTIPHYYLTMECRVDKLLKLRSELNAMNTVKISVNDFIVKASAAALRDNPVVNSTWTDQ 488

Query: 489 KGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQ 548
              I     IDI++AV T +GL TPIVR  D K +++IS  VK+LAEKA+ GKL P EF+
Sbjct: 489 --FIRRYHNIDINVAVNTPQGLFTPIVRGVDMKGLNSISTSVKQLAEKAQNGKLHPSEFE 546

Query: 549 GGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL 608
            GTF+ISNLGM  + QF A+INPPQA ILAVG     V  V+ +  +      T +++TL
Sbjct: 547 SGTFTISNLGMLGIKQFAAVINPPQAAILAVGTTETRV--VLSNKPDSPYETATILSVTL 604

Query: 609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           S DHRV +G VG  +  +      +  +L+L
Sbjct: 605 SCDHRVIDGAVGAEWLKSFKDYVENPIKLIL 635

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q8RWN9|OPD22_ARATH Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At3g13930 PE=1 SV=2

 Score =  313 bits (801), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 183/459 (39%), Positives = 264/459 (57%), Gaps = 47/459 (10%)

Query: 205 NTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEG 264
           ++S+LPP   + MP+LSPTM +GNIA+W K EGDK+  G+V+CE+ETDKAT+E EC+EEG
Sbjct: 104 SSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEG 163

Query: 265 YLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSG-------------AEVKGEK 311
           +LAKI+  EG+K++ VG+ IAITVED  D+   K+   S              +  K EK
Sbjct: 164 FLAKIVKEEGAKEIQVGEVIAITVEDEDDIQKFKDYTPSSDTGPAAPEAKPAPSLPKEEK 223

Query: 312 ETHHDSKDVVKVQKGSFTK------ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365
                S    K+ K S          SP A+ L  ++ +  SS++ +GP G ++K DV  
Sbjct: 224 VEKPASAPEAKISKPSSAPSEDRIFASPLARKLAEDNNVPLSSIKGTGPEGRIVKADVED 283

Query: 366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425
            + SG         +++T+  P  Q  + V          +  + D P+TQIRKV A RL
Sbjct: 284 FLASG---------SKETTAKPSKQVDSKVP---------ALDYVDIPHTQIRKVTASRL 325

Query: 426 LESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNT----KVSVNDIVIKAVAVALKNVPEA 481
             SKQ  PH YL+ D  +D ++  R +L          ++SVND+VIKA A+AL+ VP+ 
Sbjct: 326 AFSKQTIPHYYLTVDTCVDKMMGLRSQLNSFQEASGGKRISVNDLVIKAAALALRKVPQC 385

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           N+ W  E   I     ++I++AV TE GL  P+V++AD+K +S I  EV+ LA+KA+   
Sbjct: 386 NSSWTDEY--IRQFKNVNINVAVQTENGLYVPVVKDADKKGLSTIGEEVRFLAQKAKENS 443

Query: 542 LAPHEFQGGTFSISNLGM-FPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAV 600
           L P +++GGTF++SNLG  F + QFCA+INPPQA ILA+G   + V P  G D      V
Sbjct: 444 LKPEDYEGGTFTVSNLGGPFGIKQFCAVINPPQAAILAIGSAEKRVVPGTGPDQYN---V 500

Query: 601 VTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
            + M++TLS DHRV +G +G  +  A          +LL
Sbjct: 501 ASYMSVTLSCDHRVIDGAIGAEWLKAFKGYIETPESMLL 539

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q5M729|OPD23_ARATH Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial OS=Arabidopsis thaliana GN=At1g54220 PE=1 SV=1

 Score =  311 bits (796), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/459 (40%), Positives = 264/459 (57%), Gaps = 51/459 (11%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S+LPP   + MP+LSPTM +GNIA+W K EGDK+  G+V+CE+ETDKAT+E EC+EEGYL
Sbjct: 106 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVAPGEVLCEVETDKATVEMECMEEGYL 165

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSG-------------AEVKGEKET 313
           AKI+  EGSK++ VG+ IAITVED  D+G  K+   S              A  K EK  
Sbjct: 166 AKIVKAEGSKEIQVGEVIAITVEDEEDIGKFKDYTPSSTADAAPTKAEPTPAPPKEEKVK 225

Query: 314 HHDSKDVVKVQK------GSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI 367
              S    K  K      G     SP A+ L  ++ +  S ++ +GP G ++K D+   +
Sbjct: 226 QPSSPPEPKASKPSTPPTGDRVFASPLARKLAEDNNVPLSDIEGTGPEGRIVKADIDEYL 285

Query: 368 -KSGK-VSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425
             SGK  +++ S  T+  +P                    +  + D P++QIRKV A RL
Sbjct: 286 ASSGKGATAKPSKSTDSKAP--------------------ALDYVDIPHSQIRKVTASRL 325

Query: 426 LESKQNTPHLYLSSDVVLDPLLSFRKEL---KEKHNTK-VSVNDIVIKAVAVALKNVPEA 481
             SKQ  PH YL+ D  +D L++ R +L   KE    K +SVND+V+KA A+AL+ VP+ 
Sbjct: 326 AFSKQTIPHYYLTVDTCVDKLMALRSQLNSFKEASGGKRISVNDLVVKAAALALRKVPQC 385

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           N+ W  +   I     ++I++AV TE GL  P+V++AD+K +S I  EV+ LA+KA+   
Sbjct: 386 NSSWTDDY--IRQFKNVNINVAVQTENGLYVPVVKDADRKGLSTIGEEVRLLAQKAKENS 443

Query: 542 LAPHEFQGGTFSISNL-GMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAV 600
           L P +++GGTF++SNL G F + QFCA++NPPQA ILAVG   + V P  G D       
Sbjct: 444 LKPEDYEGGTFTVSNLGGPFGIKQFCAVVNPPQAAILAVGSAEKRVVPGNGPDQFN---F 500

Query: 601 VTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
            + M +TLS DHRV +G +G  +  A      + + +LL
Sbjct: 501 ASYMPVTLSCDHRVVDGAIGAEWLKAFKGYIENPKSMLL 539

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O66119|ODP2_ZYMMO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhC PE=3 SV=2

 Score =  303 bits (777), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/452 (41%), Positives = 255/452 (56%), Gaps = 68/452 (15%)

Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
           ++MPALSPTM +G +AKW   EGD ++ GD++ EIETDKA +EFE ++ G +AKIL PEG
Sbjct: 5   VKMPALSPTMTEGTLAKWLVKEGDAVKAGDILAEIETDKAIMEFETVDAGIIAKILVPEG 64

Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTS-------GAEVKGEKETHHDSKDVV------ 321
           S+++AVGQ IA+  E   DV  V  S +S        A+V  +KET  DS+ +       
Sbjct: 65  SENIAVGQVIAVMAEAGEDVSQVAASASSQISEPSEKADV-AQKETA-DSETISIDASLD 122

Query: 322 ------------------KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
                               +K    K SP AK L  ++ +D   +  SGP+G ++K D+
Sbjct: 123 KAISNAGYGNKTENMTASYQEKAGRIKASPLAKRLAKKNHVDLKQVNGSGPHGRIIKADI 182

Query: 364 LAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQI-----R 418
            A I             E    S  P  ST  + G  +         D P+  I     R
Sbjct: 183 EAFI------------AEANQASSNPSVSTPEASGKIT--------HDTPHNSIKLSNMR 222

Query: 419 KVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK---HNTKVSVNDIVIKAVAVAL 475
           +VIARRL ESKQN PH+YL+ DV +D LL  R EL E     N K+SVND++IKA A+AL
Sbjct: 223 RVIARRLTESKQNIPHIYLTVDVQMDALLKLRSELNESLAVQNIKISVNDMLIKAQALAL 282

Query: 476 KNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAE 535
           K  P  N  +D +  +++     DIS+AV+ E GL+TPI++ AD KS+SA+S+E+KEL  
Sbjct: 283 KATPNVNVAFDGD--QMLQFSQADISVAVSVEGGLITPILKQADTKSLSALSVEMKELIA 340

Query: 536 KARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGN 595
           +AR G+L P E+QGGT SISN+GMF + QF A+INPPQA ILA+G G +   P +  D  
Sbjct: 341 RAREGRLQPQEYQGGTSSISNMGMFGIKQFNAVINPPQASILAIGSGER--RPWVIDDAI 398

Query: 596 ETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
               V T   +T S DHRV +G    AF SA 
Sbjct: 399 TIATVAT---ITGSFDHRVIDGADAAAFMSAF 427

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O59816|ODP2_SCHPO Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lat1 PE=3 SV=1

 Score =  303 bits (777), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 196/466 (42%), Positives = 254/466 (54%), Gaps = 52/466 (11%)

Query: 191 VKKEA---VQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247
           VKK A   V    A    T   P   V+ MPALSPTM  GNI  ++K  GDKIE GDV+C
Sbjct: 29  VKKSALYPVMAKLARTYATKNYPAHTVINMPALSPTMTTGNIGAFQKKIGDKIEPGDVLC 88

Query: 248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-------- 299
           EIETDKA ++FE  +EGYLAKIL   G+KDV VG+P+A+TVE+ GDV  + +        
Sbjct: 89  EIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDVAAMADFTIEDSSA 148

Query: 300 ---SVTSGAEV------KGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQ 350
              S  SG E       K  KET   S +V   ++G     SP A+ L  E  LD S ++
Sbjct: 149 KEPSAKSGEEKSAPSSEKQSKETSSPS-NVSGEERGDRVFASPLARKLAEEKDLDLSQIR 207

Query: 351 ASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTST------AVSPGSKSDLE 404
            SGP G ++K D+                 E   P   P+ S            S +D  
Sbjct: 208 GSGPNGRIIKVDI-----------------ENFKPVVAPKPSNEAAAKATTPAASAADAA 250

Query: 405 LSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHN--TKVS 462
               +ED P + +RK+IA RL ESK   PH Y++  V ++ ++  R  L    +   K+S
Sbjct: 251 APGDYEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALNAMADGRYKLS 310

Query: 463 VNDIVIKAVAVALKNVPEANAYWDVEKGEIVL-CDAIDISIAVATEKGLMTPIVRNADQK 521
           VND+VIKA   AL+ VPE NA W    G+ +     +DIS+AVAT  GL+TP++RN    
Sbjct: 311 VNDLVIKATTAALRQVPEVNAAW---MGDFIRQYKNVDISMAVATPSGLITPVIRNTHAL 367

Query: 522 SISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGR 581
            ++ IS   K+  ++AR  KL P E+QGGTF+ISNLGMFPVDQF AIINPPQA ILAVG 
Sbjct: 368 GLAEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGT 427

Query: 582 GNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
               V P   S   +   V   M  TLS+DHRV +G +   F +AL
Sbjct: 428 TVDTVVP--DSTSEKGFKVAPIMKCTLSSDHRVVDGAMAARFTTAL 471

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q1RJT3|ODP2_RICBR Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=pdhC PE=3 SV=1

 Score =  297 bits (761), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 178/434 (41%), Positives = 251/434 (57%), Gaps = 52/434 (11%)

Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
           + L MPALSPTM +GN+A+W K EGDKI  G+VI EIETDKAT+E E ++EG LAKI+ P
Sbjct: 3   IKLLMPALSPTMTEGNLARWLKKEGDKINPGEVIAEIETDKATMEVEAVDEGTLAKIIIP 62

Query: 273 EGSKDVAVGQPIAITVEDPGDVGTV-------------KNSVTSGAEVKGEKETHHDSKD 319
           +GS++V V   IA+ +E+  ++  +             K  ++  AE    +    ++  
Sbjct: 63  QGSQNVPVNSLIAVLIEEGEELSGIEEFIAKNNSNSPKKEEISKPAETIAPQNVKEENIT 122

Query: 320 VVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSH 379
               Q       SP AK L     +    ++ SGP+G ++K DVL+  K G  S  +S+ 
Sbjct: 123 TASDQNNIKVFASPLAKRLAKIQNVRIEEIKGSGPHGRIIKQDVLSH-KGG--SKALSNK 179

Query: 380 TEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSS 439
               +P                     + +   PN  IRK+IA+RLLESKQ  PH YLS 
Sbjct: 180 IVSRNP---------------------EEYRLAPNNNIRKIIAKRLLESKQTVPHFYLSI 218

Query: 440 DVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
           +  +D LL  R+++     +  + K+SVND +I AVA AL+ VP ANA W  +   I   
Sbjct: 219 ECNVDKLLDIREDINKSFGDDKSAKISVNDFIILAVAKALQEVPNANASWGDDA--IRYY 276

Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
           + +DIS+AVA E GL+TPI+RNADQK+I  +S E+K L +KAR  KL P EFQGG F+IS
Sbjct: 277 NNVDISVAVAIENGLVTPIIRNADQKNIVDLSSEMKGLIKKARENKLTPEEFQGGGFTIS 336

Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQ--VVEPVIGSDGNETPAVVTKMNLTLSADHR 613
           NLGM+ +  F AIINPPQ+ I+ VG  ++  +V+       N+  ++ T M++TLSADHR
Sbjct: 337 NLGMYGIKNFNAIINPPQSCIMGVGSSSKRAIVK-------NDQISIATIMDVTLSADHR 389

Query: 614 VFEGKVGGAFFSAL 627
           V +G VG  F +A 
Sbjct: 390 VVDGAVGAEFLAAF 403

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	639
359486892	636	PREDICTED: dihydrolipoyllysine-residue a	0.993	0.998	0.751	0.0
296090376	659	unnamed protein product [Vitis vinifera]	0.993	0.963	0.751	0.0
255571622	633	dihydrolipoamide acetyltransferase compo	0.971	0.981	0.743	0.0
224100693	588	predicted protein [Populus trichocarpa]	0.913	0.993	0.774	0.0
356576335	628	PREDICTED: dihydrolipoyllysine-residue a	0.978	0.995	0.693	0.0
449441822	638	PREDICTED: dihydrolipoyllysine-residue a	0.987	0.989	0.690	0.0
449493259	638	PREDICTED: dihydrolipoyllysine-residue a	0.987	0.989	0.688	0.0
388502998	627	unknown [Lotus japonicus]	0.981	1.0	0.690	0.0
297816492	636	dihydrolipoamide S-acetyltransferase 3 [	0.985	0.990	0.674	0.0
5881965	637	dihydrolipoamide S-acetyltransferase [Ar	0.985	0.989	0.664	0.0

>gi|359486892|ref|XP_002262782.2| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Vitis vinifera]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/640 (75%), Positives = 551/640 (86%), Gaps = 5/640 (0%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAP 60
           MALSRLR P+++R  SLFRAR+ LSS ++S SL   S+ + S VD +G LLRP S  + P
Sbjct: 1   MALSRLRHPIVSRAPSLFRARI-LSS-TASRSLPHTSTVQKSSVDGDGTLLRPASLLMVP 58

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
            V D   KLK+Q+GVR+FSS+ELPSH V+GMPALSPTM+QGNIAKWRKKEGDKIE GD+L
Sbjct: 59  RVQDGSSKLKLQVGVRNFSSAELPSHMVLGMPALSPTMTQGNIAKWRKKEGDKIEPGDVL 118

Query: 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAE 180
           CEIETDKAT+EFESLEEGFLAKILV EGSKDVPVGQPIAITVED +DIQ +PA++AGG+ 
Sbjct: 119 CEIETDKATLEFESLEEGFLAKILVAEGSKDVPVGQPIAITVEDEEDIQKVPASVAGGSG 178

Query: 181 AKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
            +E+ S H++   E  Q+  +S INT+ELPP +VL MPALSPTMNQGNIAKWRK EGDKI
Sbjct: 179 VEEKKSKHENAGNEDKQQEMSSTINTAELPPHIVLGMPALSPTMNQGNIAKWRKKEGDKI 238

Query: 241 EVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNS 300
           EVGDVICEIETDKATLEFE LEEGYLAKI+APEGSKDVAVGQPIAITVEDP D+  VK S
Sbjct: 239 EVGDVICEIETDKATLEFESLEEGYLAKIVAPEGSKDVAVGQPIAITVEDPDDIEIVKAS 298

Query: 301 VTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLK 360
           V+SG+++K EK    +S++ V+ +K SFT+ISPSAKLLI E GLDAS+L+ASGP GTLLK
Sbjct: 299 VSSGSDIKKEKPQQQESRNEVRAEKSSFTRISPSAKLLITEFGLDASTLKASGPRGTLLK 358

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPL-PQTSTAVSPGSKSDLELSDSFEDFPNTQIRK 419
           GDVLAAIK+G + S  SS  +K  P P+  Q S + SP  +S L+ S+SFED PN+QIRK
Sbjct: 359 GDVLAAIKAG-IGSSSSSSKDKMPPPPVHSQASPSASP-ERSHLQQSESFEDMPNSQIRK 416

Query: 420 VIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVP 479
           VIA RLLESKQNTPHLYLSSDV+LDPLLSFRKELKEKH+ KVSVNDIVIKAVA+ALKNVP
Sbjct: 417 VIATRLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDVKVSVNDIVIKAVAMALKNVP 476

Query: 480 EANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARA 539
           EANAYW+ EKGE++L D++DISIAVATEKGLMTPIVRNADQK+IS+IS+EVKELAEKARA
Sbjct: 477 EANAYWNAEKGEVILSDSVDISIAVATEKGLMTPIVRNADQKTISSISIEVKELAEKARA 536

Query: 540 GKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPA 599
           GKL P+EFQGGTFSISNLGMFPVD FCAIINPPQ+GILAVGRGN+VVEPV+G DG E PA
Sbjct: 537 GKLKPNEFQGGTFSISNLGMFPVDHFCAIINPPQSGILAVGRGNKVVEPVVGGDGLEKPA 596

Query: 600 VVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           VVTKMNLTLSADHRVF+GKVGGAF SAL SNFSDIRRLLL
Sbjct: 597 VVTKMNLTLSADHRVFDGKVGGAFLSALRSNFSDIRRLLL 636

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090376|emb|CBI40195.3| unnamed protein product [Vitis vinifera]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/640 (75%), Positives = 551/640 (86%), Gaps = 5/640 (0%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAP 60
           MALSRLR P+++R  SLFRAR+ LSS ++S SL   S+ + S VD +G LLRP S  + P
Sbjct: 24  MALSRLRHPIVSRAPSLFRARI-LSS-TASRSLPHTSTVQKSSVDGDGTLLRPASLLMVP 81

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
            V D   KLK+Q+GVR+FSS+ELPSH V+GMPALSPTM+QGNIAKWRKKEGDKIE GD+L
Sbjct: 82  RVQDGSSKLKLQVGVRNFSSAELPSHMVLGMPALSPTMTQGNIAKWRKKEGDKIEPGDVL 141

Query: 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAE 180
           CEIETDKAT+EFESLEEGFLAKILV EGSKDVPVGQPIAITVED +DIQ +PA++AGG+ 
Sbjct: 142 CEIETDKATLEFESLEEGFLAKILVAEGSKDVPVGQPIAITVEDEEDIQKVPASVAGGSG 201

Query: 181 AKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
            +E+ S H++   E  Q+  +S INT+ELPP +VL MPALSPTMNQGNIAKWRK EGDKI
Sbjct: 202 VEEKKSKHENAGNEDKQQEMSSTINTAELPPHIVLGMPALSPTMNQGNIAKWRKKEGDKI 261

Query: 241 EVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNS 300
           EVGDVICEIETDKATLEFE LEEGYLAKI+APEGSKDVAVGQPIAITVEDP D+  VK S
Sbjct: 262 EVGDVICEIETDKATLEFESLEEGYLAKIVAPEGSKDVAVGQPIAITVEDPDDIEIVKAS 321

Query: 301 VTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLK 360
           V+SG+++K EK    +S++ V+ +K SFT+ISPSAKLLI E GLDAS+L+ASGP GTLLK
Sbjct: 322 VSSGSDIKKEKPQQQESRNEVRAEKSSFTRISPSAKLLITEFGLDASTLKASGPRGTLLK 381

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPL-PQTSTAVSPGSKSDLELSDSFEDFPNTQIRK 419
           GDVLAAIK+G + S  SS  +K  P P+  Q S + SP  +S L+ S+SFED PN+QIRK
Sbjct: 382 GDVLAAIKAG-IGSSSSSSKDKMPPPPVHSQASPSASP-ERSHLQQSESFEDMPNSQIRK 439

Query: 420 VIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVP 479
           VIA RLLESKQNTPHLYLSSDV+LDPLLSFRKELKEKH+ KVSVNDIVIKAVA+ALKNVP
Sbjct: 440 VIATRLLESKQNTPHLYLSSDVILDPLLSFRKELKEKHDVKVSVNDIVIKAVAMALKNVP 499

Query: 480 EANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARA 539
           EANAYW+ EKGE++L D++DISIAVATEKGLMTPIVRNADQK+IS+IS+EVKELAEKARA
Sbjct: 500 EANAYWNAEKGEVILSDSVDISIAVATEKGLMTPIVRNADQKTISSISIEVKELAEKARA 559

Query: 540 GKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPA 599
           GKL P+EFQGGTFSISNLGMFPVD FCAIINPPQ+GILAVGRGN+VVEPV+G DG E PA
Sbjct: 560 GKLKPNEFQGGTFSISNLGMFPVDHFCAIINPPQSGILAVGRGNKVVEPVVGGDGLEKPA 619

Query: 600 VVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           VVTKMNLTLSADHRVF+GKVGGAF SAL SNFSDIRRLLL
Sbjct: 620 VVTKMNLTLSADHRVFDGKVGGAFLSALRSNFSDIRRLLL 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571622|ref|XP_002526756.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis] gi|223533883|gb|EEF35610.1| dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  917 bits (2369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/632 (74%), Positives = 529/632 (83%), Gaps = 11/632 (1%)

Query: 1   MALSRLR-QPVIARTLSLFRARLSLSSFSSSTSLARISSG-KNSFVDVNGILLRPLSSTL 58
           MA SRLR Q +I+R  SL      LS+ S S +   I SG K+SFVD N   LRP S  +
Sbjct: 1   MAFSRLRHQMMISRAPSLLLKTRVLSTSSRSVTRCAICSGAKHSFVDGNDFYLRPTSIFM 60

Query: 59  APEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGD 118
              VHD  LKLK+ IGVRHFSSSE PSH V+GMPALSPTM+QGN+AKWRKKEGDK+++GD
Sbjct: 61  ITGVHDKFLKLKLGIGVRHFSSSE-PSHMVIGMPALSPTMTQGNVAKWRKKEGDKVKVGD 119

Query: 119 ILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGG 178
           +LCEIETDKAT+EFESLEEGFLAKIL PEGSKDVPVGQPIAITVE+ DDIQ++P   + G
Sbjct: 120 VLCEIETDKATLEFESLEEGFLAKILTPEGSKDVPVGQPIAITVENEDDIQNVPVD-SSG 178

Query: 179 AEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGD 238
           AE KE  S  QD K E V   SA RINTSELPP V LEMPALSPTMNQGNIAKWRK EGD
Sbjct: 179 AEIKEGKSAEQDAKGEDVGSKSA-RINTSELPPHVFLEMPALSPTMNQGNIAKWRKKEGD 237

Query: 239 KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVK 298
           KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA+TVEDP D+ TVK
Sbjct: 238 KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIALTVEDPNDIETVK 297

Query: 299 NSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTL 358
            S+++G EVK EK T HDSKD  + +K SF++ISPSA+LLI E+GLDAS+L+ASGP+GTL
Sbjct: 298 TSISNGMEVKEEKFTRHDSKDETREEKPSFSRISPSARLLISEYGLDASTLKASGPFGTL 357

Query: 359 LKGDVLAAIKSGKVSSRISSHTEKTSPSPL--PQTSTAVSPGSKSDLELSDSFEDFPNTQ 416
           LK DVLAAIK+GK SS+ S   EK +PSP   P  ST V P  +S  + SDSFED PNTQ
Sbjct: 358 LKIDVLAAIKAGKGSSKKSVPKEKEAPSPQKGPYASTTVLPEPQS--QQSDSFEDIPNTQ 415

Query: 417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALK 476
           IRKVIARRLLESKQ TPHLYLS+DV+LDPL+SFRKELKE H+ KVSVNDIVIKAVA+AL+
Sbjct: 416 IRKVIARRLLESKQTTPHLYLSTDVILDPLISFRKELKEHHDIKVSVNDIVIKAVAIALR 475

Query: 477 NVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEK 536
           NVPEANAYW+ +KGEIV CD++DISIAVATEKGLMTPIVRNADQKSIS+IS EVK+LAE+
Sbjct: 476 NVPEANAYWNEDKGEIVFCDSVDISIAVATEKGLMTPIVRNADQKSISSISAEVKQLAER 535

Query: 537 ARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNE 596
           ARAGKL P+EFQGGTFSISNLGM+PVD F AIINPPQAGILAVGRGN+VVEP++GSDG E
Sbjct: 536 ARAGKLTPNEFQGGTFSISNLGMYPVDHFAAIINPPQAGILAVGRGNKVVEPLLGSDGCE 595

Query: 597 TPAVVTKMNLTLSADHRVFEGKVGGAFFSALC 628
            PAVVTKM LTLSADHRVF+GKVGG  + + C
Sbjct: 596 KPAVVTKMTLTLSADHRVFDGKVGG--YCSFC 625

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100693|ref|XP_002311977.1| predicted protein [Populus trichocarpa] gi|222851797|gb|EEE89344.1| predicted protein [Populus trichocarpa]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/595 (77%), Positives = 509/595 (85%), Gaps = 11/595 (1%)

Query: 49  ILLRPLSSTLAPEVHD-SPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWR 107
           + +R  S      VHD S LKLKMQIGVRHFSSSE PSHTVVGMPALSPTM+QGNIAKW+
Sbjct: 1   MCIRSASVFTVSGVHDDSSLKLKMQIGVRHFSSSE-PSHTVVGMPALSPTMTQGNIAKWK 59

Query: 108 KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167
           KKEG+KIE+GD+LCEIETDKAT+EFE LEEGFLAKILVPEGSKDVPVGQ IAITVEDADD
Sbjct: 60  KKEGEKIEVGDVLCEIETDKATLEFECLEEGFLAKILVPEGSKDVPVGQAIAITVEDADD 119

Query: 168 IQHIPATIAGGAEAKEQSSTHQDVKKEA-VQETSASRINTSELPPRVVLEMPALSPTMNQ 226
           IQ++PAT+  G++ KE+ ST QDVK E   QETS+  IN SELPP V+L MPALSPTMNQ
Sbjct: 120 IQNVPATVGSGSDVKEEKSTDQDVKSEGGAQETSS--INASELPPHVILGMPALSPTMNQ 177

Query: 227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           GNIAKWRK EGDKIEVGDVICEIETDKATLEFE LEEGYLAKILAPEGSKDVAVGQPIAI
Sbjct: 178 GNIAKWRKKEGDKIEVGDVICEIETDKATLEFETLEEGYLAKILAPEGSKDVAVGQPIAI 237

Query: 287 TVEDPGDVGTVKNSVTS--GAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGL 344
           TVED  D+  VK S +S  G +VK EK THH SK     +KG+F +ISPSAKLLI EHGL
Sbjct: 238 TVEDSNDIEAVKTSASSSSGKKVKEEKPTHHGSKAEASKEKGNFKRISPSAKLLISEHGL 297

Query: 345 DASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLE 404
           DASSL ASGPYGTLLK DVLAAIKSGK   + SS  EK +P P      +  P  +   +
Sbjct: 298 DASSLHASGPYGTLLKTDVLAAIKSGK--GKKSSAAEKGAPPPQKSPQPSAIPSLEP--K 353

Query: 405 LSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVN 464
            SDSFED PNTQIRKVIARRLLESKQ TPHLYLS+DV+LDPLLSFRKELKE+H+ KVSVN
Sbjct: 354 QSDSFEDLPNTQIRKVIARRLLESKQTTPHLYLSTDVILDPLLSFRKELKEQHDVKVSVN 413

Query: 465 DIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSIS 524
           DIVIKAVA+AL+NVP+ANAYW+VEKGEI+LCD++DISIAVATEKGLMTPIVRNADQKSIS
Sbjct: 414 DIVIKAVAIALRNVPQANAYWNVEKGEIILCDSVDISIAVATEKGLMTPIVRNADQKSIS 473

Query: 525 AISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQ 584
           AIS EVK+LAEKAR GKL P+EFQGGTFSISNLGM+PVDQF AIINPPQAGILAVGRGN+
Sbjct: 474 AISSEVKQLAEKARVGKLTPNEFQGGTFSISNLGMYPVDQFVAIINPPQAGILAVGRGNK 533

Query: 585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           VVEP++GSDG E PAV+ KMNLTLSADHRVF+G+V GAF SAL +NFSDIRRLLL
Sbjct: 534 VVEPLLGSDGIERPAVINKMNLTLSADHRVFDGQVSGAFLSALRANFSDIRRLLL 588

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576335|ref|XP_003556288.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Glycine max]

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/642 (69%), Positives = 523/642 (81%), Gaps = 17/642 (2%)

Query: 1   MALSRLRQPVIARTLSLFRA---RLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSST 57
           MALSRLR P+ +R+L +  +    LS +S+SS  +L           D + I+ RP S +
Sbjct: 1   MALSRLRHPLFSRSLLILSSPARSLSRTSYSSIFTLGG---------DHHNII-RPASCS 50

Query: 58  LAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIG 117
               +HD  LK K    V++FSSS+  SH V+GMPALSPTM+QGNIAKWRKKEG+KIE+G
Sbjct: 51  RLTGIHDRSLKSKW-TDVKYFSSSD-SSHEVLGMPALSPTMTQGNIAKWRKKEGEKIEVG 108

Query: 118 DILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG 177
           D+LCEIETDKAT+EFESLEEGFLAKILVPEGSKDVPVGQPIAITVED +DIQ++PA+  G
Sbjct: 109 DVLCEIETDKATLEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDENDIQNVPASAGG 168

Query: 178 GAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEG 237
               +E+  T +DV  E   E++++ IN SELPP V+LEMPALSPTMNQGNIAKWRK EG
Sbjct: 169 ETRVEEKKPTREDVTDERKSESTSAIINASELPPHVLLEMPALSPTMNQGNIAKWRKQEG 228

Query: 238 DKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV 297
           DKIEVGD++CEIETDKATLEFE LEEGYLAKILAPEGSK+VAVG PIAITVED  D+  +
Sbjct: 229 DKIEVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGHPIAITVEDASDIEAI 288

Query: 298 KNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGT 357
            NSV S +    +K    D+K   K QK +  +ISP+AKLLI E+GLDAS+L A+GPYGT
Sbjct: 289 MNSV-SRSSTNQQKAPQRDTKSEAKAQKNNIIRISPAAKLLITEYGLDASTLNATGPYGT 347

Query: 358 LLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQI 417
           LLKGDVL+AIKSGK+S + +S  EK S S       A S  SKSDL+LSD++EDFPN+QI
Sbjct: 348 LLKGDVLSAIKSGKLSPKPASSKEKVS-SFQSHQQVAASQESKSDLKLSDAYEDFPNSQI 406

Query: 418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKN 477
           RKVIA+RLL+SKQNTPHLYLSSDVVLDPLLS RK+LKE+++ KVSVNDI++K VA AL+N
Sbjct: 407 RKVIAKRLLDSKQNTPHLYLSSDVVLDPLLSLRKDLKEQYDVKVSVNDIIVKVVAAALRN 466

Query: 478 VPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKA 537
           VPEANAYW+VE GE+VL D+IDI IAVATEKGLMTPI++NADQK+ISAIS EVKELA KA
Sbjct: 467 VPEANAYWNVETGEVVLNDSIDICIAVATEKGLMTPIIKNADQKTISAISSEVKELAAKA 526

Query: 538 RAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNET 597
           RAGKL PHEFQGGTFSISNLGMFPVD+FCAIINPPQA ILAVGRGN+VVEPVIG+DG E 
Sbjct: 527 RAGKLKPHEFQGGTFSISNLGMFPVDKFCAIINPPQACILAVGRGNKVVEPVIGTDGIEK 586

Query: 598 PAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           P++ TK++LTLSADHRVF+GKVGGAF SAL SNFSDIRRLLL
Sbjct: 587 PSIATKLSLTLSADHRVFDGKVGGAFLSALQSNFSDIRRLLL 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441822|ref|XP_004138681.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  854 bits (2206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/646 (69%), Positives = 509/646 (78%), Gaps = 15/646 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSL---SSFSSSTSLARISSGK-NSFVDVNGILLRPLSS 56
           M+L RLR PVI R  SL  ARL     SS  SS  ++R S+     F   +G L RP+  
Sbjct: 1   MSLHRLRDPVIVRARSLLHARLGAFHSSSPVSSRYISRYSTWNVQRFSVGDGSLFRPVPF 60

Query: 57  TLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEI 116
           +         L L+  +G+R FSS++  SH V+ MPALSPTM+QGNIAKWRKKEGDK+ +
Sbjct: 61  SCFTGACGRALHLEQSVGIRFFSSTD-SSHAVLEMPALSPTMNQGNIAKWRKKEGDKVTV 119

Query: 117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT-I 175
           GD+LCEIETDKAT+EFESLEEG+LAKILVPEGSKDVPVGQPIAITVED DDI  + A  +
Sbjct: 120 GDVLCEIETDKATLEFESLEEGYLAKILVPEGSKDVPVGQPIAITVEDPDDINRVLANDV 179

Query: 176 AGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKN 235
           +G  + K++       K EA  + S+  IN+S+LPP +VLEMPALSPTMNQGNIA WRK 
Sbjct: 180 SGATDVKQE-------KSEASAQASSVEINSSKLPPHIVLEMPALSPTMNQGNIATWRKK 232

Query: 236 EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVG 295
           EGDKIEVGDVICEIETDKATLEFE LEEGYLAKILAPEGSKDVAVG+PIAITVED  D+ 
Sbjct: 233 EGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGKPIAITVEDLADIE 292

Query: 296 TVKNSVTSGAEVKGEKETHHDSKDVVKVQKG--SFTKISPSAKLLILEHGLDASSLQASG 353
           +VKN+V+S + +K +K      K+ V+  KG  +  +ISP+AKLLI EHGLD SSL+ASG
Sbjct: 293 SVKNAVSSSSSIKEDKPADSTVKNGVETLKGGGAVARISPAAKLLIAEHGLDVSSLKASG 352

Query: 354 PYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFP 413
            +GTLLKGDVLAAIKSGK  S +S   EK SP    Q S+ V   +K   + SDSFED P
Sbjct: 353 SHGTLLKGDVLAAIKSGKGLSEVSLSREKRSPEVHAQASSTVLSETKLSTKQSDSFEDLP 412

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRKVIA+RLLESKQNTPHLYLS+DVVLDPLLS RK+LKEKH+ KVSVNDIVIKAVAV
Sbjct: 413 NSQIRKVIAKRLLESKQNTPHLYLSTDVVLDPLLSLRKDLKEKHDVKVSVNDIVIKAVAV 472

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV  ANAYWD  KGE+V CD+IDISIAVATEKGLMTPIVRNAD K+ISAIS EVKEL
Sbjct: 473 ALRNVCGANAYWDDVKGEVVFCDSIDISIAVATEKGLMTPIVRNADLKTISAISSEVKEL 532

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           AEKARAGKL P EFQGGTFSISNLGMFPVD FCAIINPPQAGILAVGRGN+VVEP+IG D
Sbjct: 533 AEKARAGKLKPDEFQGGTFSISNLGMFPVDNFCAIINPPQAGILAVGRGNKVVEPIIGDD 592

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           G E P VV KMNLTLSADHRVF+GKVGG F SAL +NFS I+RLLL
Sbjct: 593 GIERPVVVNKMNLTLSADHRVFDGKVGGEFLSALQANFSSIQRLLL 638

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493259|ref|XP_004159237.1| PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial-like [Cucumis sativus]

 Score =  841 bits (2172), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/646 (68%), Positives = 510/646 (78%), Gaps = 15/646 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSL---SSFSSSTSLARISSGK-NSFVDVNGILLRPLSS 56
           M+L RLR PVI R  SL  ARL     SS  SS  ++R S+     F   +G L RP+  
Sbjct: 1   MSLHRLRDPVIVRARSLLHARLGAFHSSSPISSRYISRYSTWNVQRFSVGDGSLFRPVPF 60

Query: 57  TLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEI 116
           +         L L+  +G+R FSS++  SH V+ MPALSPTM+QGNIAKWRKKEGDK+ +
Sbjct: 61  SCFTGACGRALHLEQSVGIRFFSSTD-SSHAVLEMPALSPTMNQGNIAKWRKKEGDKVTV 119

Query: 117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPAT-I 175
           GD+LCEIETDKAT+EFESLEEG+LAKILVPEGSKDVPVGQPIAITVED DDI  + A  +
Sbjct: 120 GDVLCEIETDKATLEFESLEEGYLAKILVPEGSKDVPVGQPIAITVEDPDDINRVLANDV 179

Query: 176 AGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKN 235
           +G  + K++       K EA  + S+  IN+S+LPP +VLEMPALSPTMNQGNIA WRK 
Sbjct: 180 SGATDVKQE-------KSEASAQASSVEINSSKLPPHIVLEMPALSPTMNQGNIATWRKK 232

Query: 236 EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVG 295
           EGDKIEVGDVICEIETDKATLEFE LEEGYLAKILAPEGSKDVAVG+PIAITVEDP D+ 
Sbjct: 233 EGDKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKDVAVGKPIAITVEDPADIE 292

Query: 296 TVKNSVTSGAEVKGEKETHHDSKDVVKVQKG--SFTKISPSAKLLILEHGLDASSLQASG 353
           +VK++V+S + +K +K      K+ V+  KG  +  +ISP+AKLLI EHGLD SSL+ASG
Sbjct: 293 SVKSAVSSSSSIKEDKPADSTVKNGVETLKGGGAVARISPAAKLLIAEHGLDVSSLKASG 352

Query: 354 PYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFP 413
            +GTLLKGDVLAAIKSGK  S +S   EK SP    Q S+ V   +K   + SDSFED P
Sbjct: 353 SHGTLLKGDVLAAIKSGKGLSEVSLSREKRSPEVHAQASSTVLSETKLSTKQSDSFEDLP 412

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRKVIA+RLLESKQNTPHLYLS+DV+LDPLLS RK+LKEKH+ KVSVNDIVIKAVAV
Sbjct: 413 NSQIRKVIAKRLLESKQNTPHLYLSTDVMLDPLLSLRKDLKEKHDVKVSVNDIVIKAVAV 472

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV  ANAYWD  KGE+V CD+IDISIAVATEKGLMTPIVRNAD K+ISAIS EVKEL
Sbjct: 473 ALRNVCGANAYWDDVKGEVVFCDSIDISIAVATEKGLMTPIVRNADLKTISAISSEVKEL 532

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           AEKARAGKL P EFQGGTFSISNLGMFPVD FCAIINPPQAGILAVGRGN+VVEP+IG D
Sbjct: 533 AEKARAGKLKPDEFQGGTFSISNLGMFPVDNFCAIINPPQAGILAVGRGNKVVEPIIGDD 592

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           G E P VV KMNLTLSADHRVF+GKVGG F SAL +NFS I+RLLL
Sbjct: 593 GIERPVVVNKMNLTLSADHRVFDGKVGGEFLSALQANFSSIQRLLL 638

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502998|gb|AFK39565.1| unknown [Lotus japonicus]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/639 (69%), Positives = 515/639 (80%), Gaps = 12/639 (1%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRPLSSTLAP 60
           MALSRLR P+I+R++ L  +  + S   +S S    S G N         LRP + +   
Sbjct: 1   MALSRLRHPLISRSIRLLSSSSTRSLSRTSNSW-NFSVGGNEN-------LRPATWSGLT 52

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
            V D  LK K  I V++FSSS+  SH+V+GMPALSPTM+QGNIAKW+KKEG+KIE+GD+L
Sbjct: 53  GVCDRCLKSKW-IDVKYFSSSDS-SHSVLGMPALSPTMTQGNIAKWKKKEGEKIEVGDVL 110

Query: 121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAE 180
           CEIETDKATVEFESLEEG+LAKIL PEGSKDVPVGQPIAITVED  DIQ++PA+  G A 
Sbjct: 111 CEIETDKATVEFESLEEGYLAKILTPEGSKDVPVGQPIAITVEDEGDIQNLPASAGGEAG 170

Query: 181 AKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
            +E+ STHQDV  E   E++++ IN SELPP V+LEMPALSPTMNQGNI KW K EGDKI
Sbjct: 171 VEEKKSTHQDVSDEKKPESTSTTINASELPPHVLLEMPALSPTMNQGNIVKWMKKEGDKI 230

Query: 241 EVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNS 300
           EVGD++CEIETDKATLEFE LEEGYLAKILAPEGSK+VAVG PIAITVED  D+  +KNS
Sbjct: 231 EVGDILCEIETDKATLEFETLEEGYLAKILAPEGSKEVAVGMPIAITVEDASDIEAIKNS 290

Query: 301 VTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLK 360
           + S +  + EK T H +K+ VK  K   T+ISP+AKLLI E+GLDAS+L A+GP+GTLLK
Sbjct: 291 IGSSSASQQEKATQHATKNDVKAHKNKTTRISPAAKLLITEYGLDASTLNATGPHGTLLK 350

Query: 361 GDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKV 420
           GDVL+AIKSGK+S + +S     S S   Q   A S  SKSDL  SD++ED PN+QIRKV
Sbjct: 351 GDVLSAIKSGKLSPKPASSKAHASSSQRHQ--AAASQESKSDLTQSDAYEDLPNSQIRKV 408

Query: 421 IARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPE 480
           IA+RLLESKQNTPHLYLSSDV+LDPLLS RK+LKE+++ KVSVNDI+IK VA AL+NVPE
Sbjct: 409 IAKRLLESKQNTPHLYLSSDVILDPLLSLRKDLKEQYDVKVSVNDIIIKVVAAALRNVPE 468

Query: 481 ANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG 540
           ANAYWD EKGEI LCD++DI IAVATEKGLMTPI++NAD K+ISAIS EVKELA KAR G
Sbjct: 469 ANAYWDAEKGEINLCDSVDICIAVATEKGLMTPIIKNADHKTISAISSEVKELAAKAREG 528

Query: 541 KLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAV 600
           KL PHEF GGTFSISNLGMFPVD+FCAIINPPQA ILAVG+GN+VVEPVIG+DG E P+V
Sbjct: 529 KLRPHEFHGGTFSISNLGMFPVDKFCAIINPPQACILAVGKGNKVVEPVIGADGIEKPSV 588

Query: 601 VTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
             K++LTLSADHRVF+GKV GAF SAL SNFSDIRRLLL
Sbjct: 589 ANKLSLTLSADHRVFDGKVAGAFLSALKSNFSDIRRLLL 627

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816492|ref|XP_002876129.1| dihydrolipoamide S-acetyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi|297321967|gb|EFH52388.1| dihydrolipoamide S-acetyltransferase 3 [Arabidopsis lyrata subsp. lyrata]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/645 (67%), Positives = 512/645 (79%), Gaps = 15/645 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSL-ARISSGKNSFVD----VNGILLRPLS 55
           M L   R+  IART SL RARL    F+ ++   +R S G     D     NG+  RP S
Sbjct: 1   MVLPLFRRAAIARTSSLLRARL----FAPASGFHSRFSDGLYHLDDKIRSSNGV--RPAS 54

Query: 56  STLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIE 115
             +   + DSP K  ++ GV++FSS+   S TV+ MPALSPTMS GN+ KW KKEGDK+E
Sbjct: 55  IDMITRMDDSPPKPILRFGVQNFSSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVE 114

Query: 116 IGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATI 175
           +GD+LCEIETDKATVEFES EEGFLAKILV EGSKD+PV +PIAI VE+ DDIQ++PATI
Sbjct: 115 VGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDIQNVPATI 174

Query: 176 AGGAEAKEQSSTHQDVK-KEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRK 234
            GG   KE++S  Q++K  E+ Q+  + + +TS+LPP VVLEMPALSPTMNQGNIAKW K
Sbjct: 175 EGGRVGKEETSAQQEMKPDESTQQKGSIQPDTSDLPPHVVLEMPALSPTMNQGNIAKWWK 234

Query: 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
            EGDKIEVGDVI EIETDKATLEFE LEEGYLAKIL PEGSKDVAVG+PIA+ VED   +
Sbjct: 235 KEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESI 294

Query: 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGP 354
             +K+S    +EV+  KE  H   D    +K  FTKISP+AKLLIL HGL+ASS++ASGP
Sbjct: 295 EVIKSSSAGSSEVETVKEVPHSVVDKPTGRKAGFTKISPAAKLLILGHGLEASSIEASGP 354

Query: 355 YGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPN 414
           YGTLLK DV AAI SGKVS + S  T+K  PS   +T +  S  SKS +  SD++EDFPN
Sbjct: 355 YGTLLKSDVAAAIASGKVS-KTSVSTKKKQPSK--ETPSKSSSTSKSSVTQSDNYEDFPN 411

Query: 415 TQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVA 474
           +QIRK+IA+RLLESKQ TPHLYL SDVVLDPLL+FRKEL+E H  KVSVNDIVIKAVAVA
Sbjct: 412 SQIRKIIAKRLLESKQKTPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVIKAVAVA 471

Query: 475 LKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELA 534
           L+NV +ANAYWD EKG+IV+CD++DISIAVATEKGLMTPI++NADQKSISAIS+EVKELA
Sbjct: 472 LRNVRQANAYWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKELA 531

Query: 535 EKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDG 594
           +KAR+GKLAPHEFQGGTFSISNLGM+PVD FCAIINPPQAGILAVGRGN+VVEPVIG DG
Sbjct: 532 QKARSGKLAPHEFQGGTFSISNLGMYPVDHFCAIINPPQAGILAVGRGNKVVEPVIGLDG 591

Query: 595 NETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
            E P+VVTKMN+TLSADHR+F+G+VG +F S L SNF D+RRLLL
Sbjct: 592 IEKPSVVTKMNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 636

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5881965|gb|AAD55140.1|AF066080_1 dihydrolipoamide S-acetyltransferase [Arabidopsis thaliana]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/646 (66%), Positives = 509/646 (78%), Gaps = 16/646 (2%)

Query: 1   MALSRLRQPVIARTLSLFRARLSLSSFSSSTSL-ARISSGKNSFVD----VNGILLRPLS 55
           M L   R+  IART SL RARL    F+ ++   +R S+G     D     NG+  R  S
Sbjct: 1   MVLPLFRRAAIARTSSLLRARL----FAPASEFHSRFSNGLYHLDDKISSSNGV--RSAS 54

Query: 56  STLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIE 115
             L   + DS  K  ++ GV++FSS+   S TV+ MPALSPTMS GN+ KW KKEGDK+E
Sbjct: 55  IDLITRMDDSSPKPILRFGVQNFSSTGPISQTVLAMPALSPTMSHGNVVKWMKKEGDKVE 114

Query: 116 IGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATI 175
           +GD+LCEIETDKATVEFES EEGFLAKILV EGSKD+PV +PIAI VE+ DDI+++PATI
Sbjct: 115 VGDVLCEIETDKATVEFESQEEGFLAKILVTEGSKDIPVNEPIAIMVEEEDDIKNVPATI 174

Query: 176 AGGAEAKEQSSTHQDVK-KEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRK 234
            GG + KE++S HQ +K  E+ Q+ S+ + + S+LPP VVLEMPALSPTMNQGNIAKW K
Sbjct: 175 EGGRDGKEETSAHQVMKPDESTQQKSSIQPDASDLPPHVVLEMPALSPTMNQGNIAKWWK 234

Query: 235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
            EGDKIEVGDVI EIETDKATLEFE LEEGYLAKIL PEGSKDVAVG+PIA+ VED   +
Sbjct: 235 KEGDKIEVGDVIGEIETDKATLEFESLEEGYLAKILIPEGSKDVAVGKPIALIVEDAESI 294

Query: 295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGP 354
             +K+S    +EV   KE      D    +K  FTKISP+AKLLILEHGL+ASS++ASGP
Sbjct: 295 EAIKSSSAGSSEVDTVKEVPDSVVDKPTERKAGFTKISPAAKLLILEHGLEASSIEASGP 354

Query: 355 YGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS-FEDFP 413
           YGTLLK DV+AAI SGK +S+ S+ T+K  PS   +T +  S  SK  +  SD+ +EDFP
Sbjct: 355 YGTLLKSDVVAAIASGK-ASKSSAFTKKKQPSK--ETPSKSSSTSKPSVTQSDNNYEDFP 411

Query: 414 NTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAV 473
           N+QIRK+IA+RLLESKQ  PHLYL SDVVLDPLL+FRKEL+E H  KVSVNDIVIKAVAV
Sbjct: 412 NSQIRKIIAKRLLESKQKIPHLYLQSDVVLDPLLAFRKELQENHGVKVSVNDIVIKAVAV 471

Query: 474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
           AL+NV +ANA+WD EKG+IV+CD++DISIAVATEKGLMTPI++NADQKSISAIS+EVKEL
Sbjct: 472 ALRNVRQANAFWDAEKGDIVMCDSVDISIAVATEKGLMTPIIKNADQKSISAISLEVKEL 531

Query: 534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
           A+KAR+GKLAPHEFQGGTFSISNLGM+PVD FCAIINPPQAGILAVGRGN+ VEPVIG D
Sbjct: 532 AQKARSGKLAPHEFQGGTFSISNLGMYPVDNFCAIINPPQAGILAVGRGNKEVEPVIGLD 591

Query: 594 GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           G E P VVTKMN+TLSADHR+F+G+VG +F S L SNF D+RRLLL
Sbjct: 592 GIEKPCVVTKMNVTLSADHRIFDGQVGASFMSELRSNFEDVRRLLL 637

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	639
UNIPROTKB|F1N690	647	DLAT "Dihydrolipoyllysine-resi	0.331	0.327	0.474	2e-100
MGI|MGI:2385311	642	Dlat "dihydrolipoamide S-acety	0.838	0.834	0.407	6.4e-99
RGD|619859	632	Dlat "dihydrolipoamide S-acety	0.837	0.846	0.406	6.4e-99
UNIPROTKB|E1C6N5	632	DLAT "Uncharacterized protein"	0.848	0.857	0.413	2.5e-97
ZFIN|ZDB-GENE-030131-2921	652	dlat "dihydrolipoamide S-acety	0.824	0.808	0.404	2.2e-96
UNIPROTKB|P10515	647	DLAT "Dihydrolipoyllysine-resi	0.859	0.848	0.409	3.7e-96
UNIPROTKB|F1SMB2	647	DLAT "Dihydrolipoyllysine-resi	0.838	0.828	0.423	3.3e-95
UNIPROTKB|E2RQS9	647	DLAT "Uncharacterized protein"	0.854	0.843	0.416	4.2e-95
DICTYBASE|DDB_G0277847	635	pdhC "dihydrolipoyllysine-resi	0.827	0.833	0.386	3e-94
UNIPROTKB|E9PEJ4	542	DLAT "Dihydrolipoyllysine-resi	0.428	0.505	0.412	1.1e-78

UNIPROTKB|F1N690 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex" [Bos taurus (taxid:9913)]

 Score = 509 (184.2 bits), Expect = 2.0e-100, Sum P(2) = 2.0e-100
 Identities = 101/213 (47%), Positives = 139/213 (65%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP H  V +P+LSPTM  G IA+W KKEG+KI  G+++ E+ETDKATV FES+EE ++AK
Sbjct:    88 LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKINEGELIAEVETDKATVGFESVEECYMAK 147

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSSTHQDVKKEAVQETSA 201
             ILV EG++DVPVG  I ITV+  +D++     T+   A     ++        A   T +
Sbjct:   148 ILVAEGTRDVPVGAIICITVDKPEDVEAFKNYTLDSSAAPAPPAAPAPTPAAPAPSPTPS 207

Query:   202 SRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECL 261
             ++   S  P  + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  
Sbjct:   208 AQAPGSSYPTHMQVLLPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEVQ 267

Query:   262 EEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV 294
             EEGYLAKIL PEG++DV +G P+ I VE   D+
Sbjct:   268 EEGYLAKILIPEGTRDVPLGTPLCIIVEKEADI 300

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

MGI|MGI:2385311 Dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Mus musculus (taxid:10090)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 235/577 (40%), Positives = 321/577 (55%)

Query:    69 LKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA 128
             L+  +G     S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKA
Sbjct:    73 LRQLLGSPSRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKA 132

Query:   129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSST 187
             TV FESLEE ++AKILVPEG++DVPVG  I ITVE   DI+     T+   A A  Q++ 
Sbjct:   133 TVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDLAAAAAPQAAP 192

Query:   188 HQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC 247
                    A     ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ 
Sbjct:   193 AAAPAPAAAPAAPSASAPGSSYPTHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLA 252

Query:   248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTS 303
             EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS
Sbjct:   253 EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGAPLCIIVEKQEDIAAFADYRPTEVTS 312

Query:   304 ------------GAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQA 351
                          A V    +    +             +SP AK L  E G+D + ++ 
Sbjct:   313 LKPQAAPPAPPPVAAVPPTPQPVAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKG 372

Query:   352 SGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFED 411
             +GP G ++K D+ + + S            K +P+     +    PG +     +  F D
Sbjct:   373 TGPEGRIIKKDIDSFVPS------------KAAPAA---AAAMAPPGPRVAPAPAGVFTD 417

Query:   412 FPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIK 469
              P + IR+VIA+RL++SKQ  PH               RKEL +  +   K+SVND +IK
Sbjct:   418 IPISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIK 477

Query:   470 AVAVALKNVPEANAYWDVEKGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISM 528
             A A+A   VPEAN+ W      ++  +  +D+S+AV+T  GL+TPIV NA  K +  I+ 
Sbjct:   478 ASALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIAS 534

Query:   529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
             +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P
Sbjct:   535 DVVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIP 594

Query:   589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
                  G +  +V   M++TLS DHRV +G VG  + +
Sbjct:   595 ADNEKGFDVASV---MSVTLSCDHRVVDGAVGAQWLA 628

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=ISO;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISO;IC

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=ISO;TAS

RGD|619859 Dlat "dihydrolipoamide S-acetyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 982 (350.7 bits), Expect = 6.4e-99, P = 6.4e-99
 Identities = 234/576 (40%), Positives = 320/576 (55%)

Query:    69 LKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA 128
             L+  +G     S  LP H  V +P+LSPTM  G IA+W KKEG+KI  GD++ E+ETDKA
Sbjct:    65 LQQLLGSPSRRSYSLPPHQKVPLPSLSPTMQAGTIARWEKKEGEKISEGDLIAEVETDKA 124

Query:   129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTH 188
             TV FESLEE ++AKILVPEG++DVPVG  I ITVE   DI+         A A  Q++  
Sbjct:   125 TVGFESLEECYMAKILVPEGTRDVPVGSIICITVEKPQDIEAFKNYTLDSATAATQAAPA 184

Query:   189 QDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICE 248
                   A     ++    S  P  + + +PALSPTM  G + +W K  G+K+  GD++ E
Sbjct:   185 PAAAPAAAPAAPSASAPGSSYPVHMQIVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAE 244

Query:   249 IETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN----SVTS- 303
             IETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +     VTS 
Sbjct:   245 IETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKQEDIAAFADYRPTEVTSL 304

Query:   304 -----------GAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQAS 352
                         A V    +    +             +SP AK L  E G+D + ++ +
Sbjct:   305 KPQAPPPVPPPVAAVPPIPQPLAPTPSAAPAGPKGRVFVSPLAKKLAAEKGIDLTQVKGT 364

Query:   353 GPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDF 412
             GP G ++K D+ + + +            K +P+     + A  PG +     +  F D 
Sbjct:   365 GPEGRIIKKDIDSFVPT------------KAAPA----AAAAAPPGPRVAPTPAGVFIDI 408

Query:   413 PNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKA 470
             P + IR+VIA+RL++SKQ  PH               RKEL +  +   K+SVND +IKA
Sbjct:   409 PISNIRRVIAQRLMQSKQTIPHYYLSVDVNMGEVLLVRKELNKMLEGKGKISVNDFIIKA 468

Query:   471 VAVALKNVPEANAYWDVEKGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISME 529
              A+A   VPEAN+ W      ++  +  +D+S+AV+T  GL+TPIV NA  K +  I+ +
Sbjct:   469 SALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLETIASD 525

Query:   530 VKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPV 589
             V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P 
Sbjct:   526 VVSLASKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLIPA 585

Query:   590 IGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
                 G +  +V   M++TLS DHRV +G VG  + +
Sbjct:   586 DNEKGFDVASV---MSVTLSCDHRVVDGAVGAQWLA 618

GO:0000166 "nucleotide binding" evidence=TAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IDA;TAS

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IDA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0030431 "sleep" evidence=IEP

GO:0045254 "pyruvate dehydrogenase complex" evidence=IDA;TAS

UNIPROTKB|E1C6N5 DLAT "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 233/564 (41%), Positives = 315/564 (55%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP+H  V +PALSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FESLEE +LAK
Sbjct:    67 LPAHQKVALPALSPTMQMGTIARWEKKEGDKIGEGDLIAEVETDKATVGFESLEECYLAK 126

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSSTHQD-VKKEAVQETS 200
             ILVPEG++DVP+G  I ITVE  + +      T+   A A   +S         +     
Sbjct:   127 ILVPEGTRDVPIGAIICITVEKPEHVDAFKNYTLDSAASAPLAASVPPPPAAAPSPPPPP 186

Query:   201 ASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFEC 260
             + +   S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE 
Sbjct:   187 SPQAPGSSYPPHMQVALPALSPTMTMGTVQRWEKKVGEKLNEGDLLAEIETDKATIGFEV 246

Query:   261 LEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSGAEVKGEKETHHDSKD 319
              EEGYLAKIL PEG++DV +G  + I VE   D+    +   T+  ++K +      S  
Sbjct:   247 QEEGYLAKILVPEGTRDVPLGTTLCIIVEKESDIPAFADYQETAVTDMKAQVPPPPPSPP 306

Query:   320 VVKVQKGSFTKISPSAKLL--ILEHGLDASSLQAS-GPYGTLL---KGDVLAAIKSGKVS 373
             VV     +     P+A     +   G      +    P    L   KG  LA +K     
Sbjct:   307 VVATPAAAALPPQPAAPPTPAVPTAGPPPRKGRILVSPLAKKLAAEKGIDLAQVKGTGPD 366

Query:   374 SRISSHTEKT--SPSPLPQTSTAVSPGSKSDLELS-DSFEDFPNTQIRKVIARRLLESKQ 430
              RI+    +T   P   P  +    P + +       +F D P + IR+VIA+RL++SKQ
Sbjct:   367 GRITKKDVETFVPPKVAPAPAVEAVPAAAAVAAAPVGTFTDIPISNIRRVIAQRLMQSKQ 426

Query:   431 NTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE 488
               PH               RKEL +    N K+SVND +IKA A+A   VPEAN+ W   
Sbjct:   427 TIPHYYLSVDVNMGEVLVLRKELNQVVSDNVKLSVNDFIIKASALACLKVPEANSSW--- 483

Query:   489 KGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
                ++  +  +D+S+AV+T  GL+TPIV NA  K +++IS +V  LA KAR GKL PHEF
Sbjct:   484 MDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLASISKDVVSLAAKAREGKLQPHEF 543

Query:   548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
             QGGTF+ISNLGM+ +  F AIINPPQA ILAVG   + + P     G +   V + M++T
Sbjct:   544 QGGTFTISNLGMYGIKNFSAIINPPQACILAVGSSEKRLVPADNEKGFD---VASMMSVT 600

Query:   608 LSADHRVFEGKVGGAFFSALCSNF 631
             LS DHRV +G VG  + +    NF
Sbjct:   601 LSCDHRVVDGAVGAQWLAEF-KNF 623

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-030131-2921 dlat "dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)" [Danio rerio (taxid:7955)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 229/566 (40%), Positives = 314/566 (55%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP H  V +PALSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FE LEE +LAK
Sbjct:    89 LPPHQKVELPALSPTMQMGTIARWEKKEGDKINEGDLIAEVETDKATVGFEMLEECYLAK 148

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSAS 202
             ILV EG++DVP+G  I ITV+  + I            +   ++             +A 
Sbjct:   149 ILVAEGTRDVPIGAVICITVDKPELISSFKDFTLDKITSSAPAAAAPPPPATPTSAPAAP 208

Query:   203 RINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE 262
             ++  S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  E
Sbjct:   209 QVPGSSYPPHMKVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 268

Query:   263 EGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAE---------VKGEKET 313
             EGYLAKI+  EG++DV +G P+ I VE   D+    + V +G           V      
Sbjct:   269 EGYLAKIMISEGTRDVPLGTPLCIIVEKESDISAFADYVETGVAASPPPAPTLVATPPPA 328

Query:   314 HHDSKDV----------VKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV 363
                +  +             +KG     SP AK L  E G+D + +  +GP G + K D+
Sbjct:   329 AAPAAPIPAPAAAPAAPAAARKGRVFA-SPLAKKLAAEKGVDITQVTGTGPDGRVTKKDI 387

Query:   364 LAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIAR 423
              + +   K++   ++     +PSP    + A  P        + +F D P + IRKVIA+
Sbjct:   388 DSFVPP-KLTPAAAAAPSAPTPSPPAAPAYAAVP--------TGTFTDVPISNIRKVIAQ 438

Query:   424 RLLESKQNTPHXXXXXXXXXXXXXXFRKELKEK---HNTKVSVNDIVIKAVAVALKNVPE 480
             RL++SKQ  PH               RKEL  +    N K+SVND +IKA A+A   VPE
Sbjct:   439 RLMQSKQTIPHYYLSIDVNMDQVLELRKELNAEVKAENIKLSVNDFIIKASALACLKVPE 498

Query:   481 ANAYWDVEKGEIVLCD-AIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARA 539
             AN+ W      ++  +  +D+S+AV+T  GL+TPIV NA  K ++ IS +V  LA KAR 
Sbjct:   499 ANSSW---MDTVIRQNHVVDVSVAVSTPVGLITPIVFNAHIKGLANISKDVSALAAKARD 555

Query:   540 GKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPA 599
             GKL PHEFQGGTF+ISNLGM+ +  F AIINPPQA ILAVG   + + P     G +   
Sbjct:   556 GKLQPHEFQGGTFTISNLGMYGIKHFSAIINPPQACILAVGGSEKRLLPADNEKGFD--- 612

Query:   600 VVTKMNLTLSADHRVFEGKVGGAFFS 625
             V   M++TLS DHRV +G VG  + +
Sbjct:   613 VANMMSVTLSCDHRVVDGAVGAQWLA 638

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA;IMP

GO:0004738 "pyruvate dehydrogenase activity" evidence=IMP

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=IMP

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0009583 "detection of light stimulus" evidence=IMP

UNIPROTKB|P10515 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 233/569 (40%), Positives = 316/569 (55%)

Query:    67 LKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETD 126
             L+L    G R++S   LP H  V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETD
Sbjct:    75 LQLLGSPGRRYYS---LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETD 131

Query:   127 KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQS 185
             KATV FESLEE ++AKILV EG++DVP+G  I ITV   +DI+     T+   A    Q+
Sbjct:   132 KATVGFESLEECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAAPTPQA 191

Query:   186 STHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245
             +        A   T +++   S  PP + + +PALSPTM  G + +W K  G+K+  GD+
Sbjct:   192 APAPTPAATASPPTPSAQAPGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDL 251

Query:   246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSG 304
             + EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T  
Sbjct:   252 LAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEV 311

Query:   305 AEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLL---KG 361
              ++K +                     +PSA       G       +  P    L   KG
Sbjct:   312 TDLKPQVPPPTPPPVAAVPPTPQPLAPTPSAPCPATPAGPKGRVFVS--PLAKKLAVEKG 369

Query:   362 DVLAAIKSGKVSSRISSHT-EKTSPSPLPQTSTAVSPGSKSDLELSDS--FEDFPNTQIR 418
               L  +K      RI+    +   PS +     AV P +   +    +  F D P + IR
Sbjct:   370 IDLTQVKGTGPDGRITKKDIDSFVPSKVAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR 429

Query:   419 KVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAVALK 476
             +VIA+RL++SKQ  PH               RKEL +  +  +K+SVND +IKA A+A  
Sbjct:   430 RVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACL 489

Query:   477 NVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEK 536
              VPEAN+ W ++   I     +D+S+AV+T  GL+TPIV NA  K +  I+ +V  LA K
Sbjct:   490 KVPEANSSW-MDT-VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATK 547

Query:   537 ARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNE 596
             AR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P     G +
Sbjct:   548 AREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFD 607

Query:   597 TPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
                V + M++TLS DHRV +G VG  + +
Sbjct:   608 ---VASMMSVTLSCDHRVVDGAVGAQWLA 633

GO:0006006 "glucose metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005967 "mitochondrial pyruvate dehydrogenase complex" evidence=NAS

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=NAS

GO:0006085 "acetyl-CoA biosynthetic process" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0006090 "pyruvate metabolic process" evidence=TAS

GO:0010510 "regulation of acetyl-CoA biosynthetic process from pyruvate" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1SMB2 DLAT "Dihydrolipoyllysine-residue acetyltransferase" [Sus scrofa (taxid:9823)]

 Score = 947 (338.4 bits), Expect = 3.3e-95, P = 3.3e-95
 Identities = 234/553 (42%), Positives = 308/553 (55%)

Query:    83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
             LP H  V +P+LSPTM  G IA+W KKEGDKI  G+++ E+ETDKATV FESLEE ++AK
Sbjct:    88 LPPHQKVPLPSLSPTMQAGTIARWEKKEGDKINEGELIAEVETDKATVGFESLEECYMAK 147

Query:   143 ILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQSSTHQDVKKEAVQETSA 201
             ILV EG++DVPVG  I ITVE  +DI+     T+   A    Q++        A   T +
Sbjct:   148 ILVAEGTRDVPVGAIICITVEKPEDIEAFKNYTLDSSAAPAPQAAPAPTPAAAAPAPTPS 207

Query:   202 SRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECL 261
             ++   S  P  + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  
Sbjct:   208 AQAPGSSYPTHMQVVLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQ 267

Query:   262 EEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSGAEVKGEKETHHDSKDV 320
             EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T   ++K        S   
Sbjct:   268 EEGYLAKILIPEGTRDVPLGTPLCIIVEKEADIPAFADYRPTEVTDLKPPAPPPTPSPVT 327

Query:   321 VKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLL---KGDVLAAIKSGKVSSRI- 376
                        +P+A       G     L  S P    L   KG  L  IK      RI 
Sbjct:   328 PVPPAPQPVAPTPAATRPATPAG-PKGRLFVS-PLAKKLASEKGIDLTQIKGTGPDGRII 385

Query:   377 SSHTEKTSPSPL-PQTSTAVSPGSKSDLELSDS-FEDFPNTQIRKVIARRLLESKQNTPH 434
                 +   P+   P  + AV P S     +    F D P + IR+VIA+RL++SKQ  PH
Sbjct:   386 KKDIDSFVPTKAAPTPAAAVPPPSPGVAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPH 445

Query:   435 XXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEI 492
                            RKEL +  +  +K+SVND +IKA A+A   VPEAN+ W ++   I
Sbjct:   446 YYLSVDVNMGEVLLVRKELNKMLEGRSKISVNDFIIKASALACLKVPEANSSW-LDT-VI 503

Query:   493 VLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTF 552
                  +DIS+AV+T  GL+TPIV NA  K +  I+ +V  LA KAR GKL PHEFQGGTF
Sbjct:   504 RQNHVVDISVAVSTPAGLITPIVFNAHIKGLETIANDVVSLATKAREGKLQPHEFQGGTF 563

Query:   553 SISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADH 612
             +ISNLGMF +  F AIINPPQA ILAVG     + P     G +   V + M++TLS DH
Sbjct:   564 TISNLGMFGIKNFSAIINPPQACILAVGASEDRLFPADNEKGFD---VASMMSVTLSCDH 620

Query:   613 RVFEGKVGGAFFS 625
             RV +G VG  + +
Sbjct:   621 RVVDGAVGAQWLA 633

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

UNIPROTKB|E2RQS9 DLAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 238/572 (41%), Positives = 320/572 (55%)

Query:    67 LKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETD 126
             L+L    G R +S   LP H  V +P+LSPTM  G IA+W KKEG+KI  G+++ E+ETD
Sbjct:    75 LQLLGSSGRRCYS---LPPHQKVPLPSLSPTMQAGTIARWEKKEGEKINEGELIAEVETD 131

Query:   127 KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPA-TIAGGAEAKEQS 185
             KATV FESLEE ++AKILV EG++DVPVG  I ITVE  +DI+     T+   A    Q+
Sbjct:   132 KATVGFESLEECYMAKILVAEGTRDVPVGAIICITVEKPEDIEAFKNYTLDSSAAPTPQA 191

Query:   186 STHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV 245
             +         +  T  ++   S  P  + + +PALSPTM  G + +W K  G+K+  GD+
Sbjct:   192 AAAPTPVAPTLPPTPPAQAPGSSYPTHMQVVLPALSPTMTMGTVQRWEKKVGEKLSEGDL 251

Query:   246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKN-SVTSG 304
             + EIETDKAT+ FE  EEGYLAKIL PEG++DV +G P+ I VE   D+    +   T  
Sbjct:   252 LAEIETDKATIGFEVQEEGYLAKILIPEGTRDVPLGTPLCIIVEKEEDIPAFADYRPTEV 311

Query:   305 AEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLL---KG 361
              ++K +                     +PSA       G     L AS P    L   KG
Sbjct:   312 TDLKPQAPPSTPPPVAPVPPTPQPVTPTPSAPRPATPAG-PKGRLFAS-PLAKKLAAEKG 369

Query:   362 DVLAAIKS----GKVSSR-ISSHTE-KTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNT 415
               L  +K     G++  + + S    K +P+P      AV PG       S  F D P +
Sbjct:   370 IDLTQVKGTGPEGRIIKKDVDSFVPTKAAPAPAAAVPAAV-PGVAP--VPSGVFTDVPIS 426

Query:   416 QIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDIVIKAVAV 473
              IR+VIA+RL++SKQ  PH               RKEL +  +  +K+SVND +IKA A+
Sbjct:   427 NIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKMLEGRSKISVNDFIIKASAL 486

Query:   474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKEL 533
             A   VPEAN+ W ++   I     +D+S+AV+T  GL+TPIV NA  K + AI+ +V  L
Sbjct:   487 ACLKVPEANSSW-LDT-VIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGLEAIANDVVSL 544

Query:   534 AEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD 593
             A KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G     + P     
Sbjct:   545 ATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASEDRLVPADNEK 604

Query:   594 GNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
             G +   V + M++TLS DHRV +G VG  + +
Sbjct:   605 GFD---VASMMSVTLSCDHRVVDGAVGAQWLA 633

GO:0005739 "mitochondrion" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0277847 pdhC "dihydrolipoyllysine-residue acetyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 221/572 (38%), Positives = 322/572 (56%)

Query:    89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE-EGFLAKILVPE 147
             + MPALSP+M++GNI +W+KKEGD+I+ GD++ E+ETDKAT++F+  +  G+LAKIL+PE
Sbjct:    86 ITMPALSPSMTEGNIVQWKKKEGDQIKAGDVIAEVETDKATMDFQYEDGNGYLAKILIPE 145

Query:   148 GSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQ-ETSASRINT 206
             G+K + + +PIAI V   +DI+   + +     + + SST   V++EA + +  A + +T
Sbjct:   146 GTKGIEINKPIAIIVSKKEDIE---SAVKNYKPSSQASST--PVQEEAPKPKQEAPKKST 200

Query:   207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE-EGY 265
                P   V+ MPALSP+M  G IA W K EGD+I+ GD I E+ETDKAT++F+  +  GY
Sbjct:   201 KTYPAHKVVGMPALSPSMETGGIASWTKKEGDQIKAGDAIAEVETDKATMDFQYEDGNGY 260

Query:   266 LAKILAPEGSKDVAVGQPIAITVEDPGDV----------------GTVKNSVTSGAEVKG 309
             LAKIL P G+  + + QP+ I V++  D                  + + S  S +    
Sbjct:   261 LAKILVPGGTSGIQINQPVCIIVKNKEDCDKFADYSVEEQSSSSSSSSQESTPSSSSSSS 320

Query:   310 EKETHHDSKDVVKVQK-GSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI- 367
             ++ T   S      +K G     +P+A+      G D S++  +GP   +LK DVL  + 
Sbjct:   321 QESTPSQSSSQQTTRKSGERIFATPAARFEASSKGYDLSAINGTGPNNRILKADVLEFVP 380

Query:   368 KSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLE 427
             +  +V+ +    T  T+  P   TS             S  F D P++ IRKV A RL E
Sbjct:   381 QKQEVAQQQQQQTTTTTKKPTTPTS-------------SGEFTDIPHSNIRKVTAARLTE 427

Query:   428 SKQNTPHXXXXXXXXXXXXXXFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
             SKQ  PH               R EL   +  K+SVND ++KA A AL++ P  N+ W  
Sbjct:   428 SKQTIPHYYLTMECRVDKLLKLRSELNAMNTVKISVNDFIVKASAAALRDNPVVNSTWTD 487

Query:   488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
             +   I     IDI++AV T +GL TPIVR  D K +++IS  VK+LAEKA+ GKL P EF
Sbjct:   488 QF--IRRYHNIDINVAVNTPQGLFTPIVRGVDMKGLNSISTSVKQLAEKAQNGKLHPSEF 545

Query:   548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
             + GTF+ISNLGM  + QF A+INPPQA ILAVG     V  V+ +  +      T +++T
Sbjct:   546 ESGTFTISNLGMLGIKQFAAVINPPQAAILAVGTTETRV--VLSNKPDSPYETATILSVT 603

Query:   608 LSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
             LS DHRV +G VG  +  +      +  +L+L
Sbjct:   604 LSCDHRVIDGAVGAEWLKSFKDYVENPIKLIL 635

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0006096 "glycolysis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|E9PEJ4 DLAT "Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 508 (183.9 bits), Expect = 1.1e-78, Sum P(2) = 1.1e-78
 Identities = 123/298 (41%), Positives = 171/298 (57%)

Query:   331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQ 390
             +SP AK L +E G+D + ++ +GP G + K D+ + + S KV+   ++    T P   P 
Sbjct:   252 VSPLAKKLAVEKGIDLTQVKGTGPDGRITKKDIDSFVPS-KVAPAPAAVVPPTGPGMAP- 309

Query:   391 TSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR 450
               T V             F D P + IR+VIA+RL++SKQ  PH               R
Sbjct:   310 VPTGV-------------FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVR 356

Query:   451 KELKE--KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCD-AIDISIAVATE 507
             KEL +  +  +K+SVND +IKA A+A   VPEAN+ W      ++  +  +D+S+AV+T 
Sbjct:   357 KELNKILEGRSKISVNDFIIKASALACLKVPEANSSW---MDTVIRQNHVVDVSVAVSTP 413

Query:   508 KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCA 567
              GL+TPIV NA  K +  I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F A
Sbjct:   414 AGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSA 473

Query:   568 IINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
             IINPPQA ILA+G     + P     G +   V + M++TLS DHRV +G VG  + +
Sbjct:   474 IINPPQACILAIGASEDKLVPADNEKGFD---VASMMSVTLSCDHRVVDGAVGAQWLA 528

GO:0004742 "dihydrolipoyllysine-residue acetyltransferase activity" evidence=IEA

GO:0006090 "pyruvate metabolic process" evidence=IEA

GO:0045254 "pyruvate dehydrogenase complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WQF7	OPD21_ARATH	2, ., 3, ., 1, ., 1, 2	0.6563	0.9859	0.9890	yes	no
Q8BMF4	ODP2_MOUSE	2, ., 3, ., 1, ., 1, 2	0.4123	0.8309	0.8271	yes	no
P10515	ODP2_HUMAN	2, ., 3, ., 1, ., 1, 2	0.4170	0.8341	0.8238	yes	no
P36413	ODP2_DICDI	2, ., 3, ., 1, ., 1, 2	0.3817	0.8294	0.8346	yes	no
P08461	ODP2_RAT	2, ., 3, ., 1, ., 1, 2	0.3987	0.9107	0.9208	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.1	0.976
3rd Layer	2.3.1.12	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_VIII0227	hypothetical protein (588 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.III.1461.1	SubName- Full=Putative uncharacterized protein; (351 aa)	•		•		•	•	•		0.963
	estExt_fgenesh4_pm.C_LG_I0194	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (358 aa)	•		•		•	•	•		0.962
	gw1.X.5451.1	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (388 aa)	•		•			•	•		0.958
	grail3.0009040502	pyruvate dehydrogenase (acetyl-transferring) (EC-1.2.4.1) (393 aa)	•		•			•	•		0.958
	LPD1	precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 (EC-1.8.1.4) (511 aa)	•	•	•		•	•	•		0.957
	fgenesh4_pg.C_LG_II001653	SubName- Full=Putative uncharacterized protein; (355 aa)	•		•			•	•		0.956
	estExt_Genewise1_v1.C_LG_IV4361	SubName- Full=Putative uncharacterized protein; (418 aa)	•		•			•			0.946
	grail3.0080008401	hypothetical protein (411 aa)	•		•			•			0.946
	LPD3	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3 (EC-1.8.1.4) (527 aa)	•	•	•			•	•		0.932
	LPD4	precursor of dehydrogenase dihydrolipoamide dehydrogenase 4 (EC-1.8.1.4) (529 aa)	•	•	•			•	•		0.932

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	639
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	1e-134
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	1e-132
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	1e-118
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	1e-111
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	3e-88
pfam00198	212	pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases	6e-81
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	2e-78
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	1e-69
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	3e-64
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	2e-59
TIGR01348	546	TIGR01348, PDHac_trf_long, pyruvate dehydrogenase	3e-53
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	4e-53
PRK14843	347	PRK14843, PRK14843, dihydrolipoamide acetyltransfe	4e-45
PLN02744	539	PLN02744, PLN02744, dihydrolipoyllysine-residue ac	5e-44
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	9e-44
PRK11857	306	PRK11857, PRK11857, dihydrolipoamide acetyltransfe	4e-39
TIGR01349	436	TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase	2e-37
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	3e-35
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	3e-32
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	7e-32
PRK11856	411	PRK11856, PRK11856, branched-chain alpha-keto acid	2e-29
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	8e-28
cd06849	74	cd06849, lipoyl_domain, Lipoyl domain of the dihyd	5e-26
COG0508	404	COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena	6e-24
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	3e-17
PRK14875	371	PRK14875, PRK14875, acetoin dehydrogenase E2 subun	2e-15
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	4e-15
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	1e-14
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	4e-14
PRK05704	407	PRK05704, PRK05704, dihydrolipoamide succinyltrans	5e-14
PRK11854	633	PRK11854, aceF, pyruvate dehydrogenase dihydrolipo	1e-13
pfam00364	73	pfam00364, Biotin_lipoyl, Biotin-requiring enzyme	1e-12
cd06663	73	cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_	3e-12
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-11
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-09
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	1e-08
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	9e-08
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	1e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	2e-05
pfam02817	39	pfam02817, E3_binding, e3 binding domain	2e-05
PLN02528	416	PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase	4e-05
cd06850	67	cd06850, biotinyl_domain, The biotinyl-domain or b	9e-05
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	0.001
COG0511	140	COG0511, AccB, Biotin carboxyl carrier protein [Li	0.001

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  398 bits (1025), Expect = e-134
 Identities = 197/440 (44%), Positives = 258/440 (58%), Gaps = 42/440 (9%)

Query: 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPE 273
            + MPALSPTM  GN+AKW K EGDK+  GDVI EIETDKAT+EFE +EEGYLAKIL PE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 274 GSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKG----------------------EK 311
           G+KDV V +PIA+ VE+  DV     +    +                          +K
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120

Query: 312 ETHHDSKDVVKVQKGSFTKI--SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS 369
           ++   S       K S  +I  SP AK L  E G+D S++  SGP G ++K D+ + +  
Sbjct: 121 QSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVAGSGPNGRIVKKDIESFVPQ 180

Query: 370 GKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK 429
                         + +     +T  +    +    + S+ED P + IRK+IA+RLLESK
Sbjct: 181 ------------SPASANQQAAATTPATYPAAAPVSTGSYEDVPLSNIRKIIAKRLLESK 228

Query: 430 QNTPHLYLSSDVVLDPLLSFRKELKEKHN--TKVSVNDIVIKAVAVALKNVPEANAYWDV 487
           Q  PH Y+S +  +D LL+ RKEL    +   K+SVND +IKA A+AL+ VPEAN+ W  
Sbjct: 229 QTIPHYYVSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWT- 287

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
               I     +DIS+AVAT  GL+TPIVRNAD K +S IS E+K+LA++AR  KL P EF
Sbjct: 288 -DNFIRRYKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEF 346

Query: 548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
           QGGTF+ISNLGMF +  F AIINPPQA ILAVG    V   V+ +D  +  AV + M++T
Sbjct: 347 QGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDV--AVVDNDEEKGFAVASIMSVT 404

Query: 608 LSADHRVFEGKVGGAFFSAL 627
           LS DHRV +G VG  F  + 
Sbjct: 405 LSCDHRVIDGAVGAEFLKSF 424

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  394 bits (1015), Expect = e-132
 Identities = 157/419 (37%), Positives = 221/419 (52%), Gaps = 35/419 (8%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP L   M +G I +W    GD ++ G  + E+ETDKAT+E      G +AK+L  EG  
Sbjct: 7   MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSK--------DVVKVQKGSF 328
            V VG  IA  +E+ G+      +  +      E      +                 + 
Sbjct: 67  -VPVGSVIA-VIEEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124

Query: 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPL 388
            K SP+ + L  E G+D S+++ SGP G + K DV AA  +                   
Sbjct: 125 AKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEAAAAAAA----------------- 167

Query: 389 PQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLS 448
           P  + A +  +      ++  E  P + +RK IA+R++ESK+  PH  L+ +V +  LL+
Sbjct: 168 PAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227

Query: 449 FRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508
            RK+LK     K++V D +IKAVA+ALK  PE NA WD +   IVL   ++I IAVAT+ 
Sbjct: 228 LRKQLKAI-GVKLTVTDFLIKAVALALKKFPELNASWDDD--AIVLKKYVNIGIAVATDG 284

Query: 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAI 568
           GL+ P++R+AD+KS+  ++ E+K+LAEKAR GKL P E QGGTF+ISNLGMF  D F  I
Sbjct: 285 GLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPI 344

Query: 569 INPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
           INPP+  IL VG    V  PV+    +    V   M L+LS DHRV +G     F  AL
Sbjct: 345 INPPEVAILGVGAI--VERPVV---VDGEIVVRKVMPLSLSFDHRVIDGADAARFLKAL 398

Length = 411

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  363 bits (932), Expect = e-118
 Identities = 185/458 (40%), Positives = 262/458 (57%), Gaps = 50/458 (10%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S+LPP   + MP+LSPTM +GNIA+W K EGDK+  G+V+CE+ETDKAT+E EC+EEGYL
Sbjct: 107 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYL 166

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSG-------------AEVKGEKET 313
           AKI+  +G+K++ VG+ IAITVE+  D+G  K+   S                 K E+  
Sbjct: 167 AKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVE 226

Query: 314 HHDSKDVVKVQK-------GSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAA 366
              S    K  K       G     SP A+ L  ++ +  SS++ +GP G ++K D+   
Sbjct: 227 KPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDY 286

Query: 367 IKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLL 426
           + SG            T+P      + A+             + D PNTQIRKV A RLL
Sbjct: 287 LASGG--------KGATAPPSTDSKAPAL------------DYTDIPNTQIRKVTASRLL 326

Query: 427 ESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNT----KVSVNDIVIKAVAVALKNVPEAN 482
           +SKQ  PH YL+ D  +D L++ R +L          K+SVND+VIKA A+AL+ VP+ N
Sbjct: 327 QSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCN 386

Query: 483 AYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKL 542
           + W  +   I     ++I++AV TE GL  P+V++AD+K +S I+ EVK+LA+KAR   L
Sbjct: 387 SSWTDDY--IRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSL 444

Query: 543 APHEFQGGTFSISNL-GMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVV 601
            P +++GGTF++SNL G F + QFCAIINPPQ+ ILAVG   + V P  G D        
Sbjct: 445 KPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYN---FA 501

Query: 602 TKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           + M++TLS DHRV +G +G  +  A      +   +LL
Sbjct: 502 SFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539

Length = 539

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  339 bits (871), Expect = e-111
 Identities = 164/426 (38%), Positives = 220/426 (51%), Gaps = 32/426 (7%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP L  TM +G I +W K  GDK++ GDV+ E+ETDKAT+E    + G LAKIL  EG  
Sbjct: 7   MPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT 66

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAK 336
            V VG  IA   E+  D      +    A                          SP+ +
Sbjct: 67  -VPVGAVIARIEEEGADAPAAAEAPPEPAAAAPASAP-----ATAASAAAGRVLASPAVR 120

Query: 337 LLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS 396
            L  E G+D S ++ +GP G + K DV AA+                + +P P  +   S
Sbjct: 121 RLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEKA----------AAAAAPAPAAAAPAS 170

Query: 397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK-- 454
              + +          P ++IRK IA R++ESKQ  PHL L ++V +  L++ RK+LK  
Sbjct: 171 AAGEEERV--------PMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALRKKLKEE 222

Query: 455 -EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTP 513
            EK   K++    ++KAV  ALK  PE NA  D +  EIV    ++I IAV T +GL+ P
Sbjct: 223 FEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVP 282

Query: 514 IVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQ 573
           ++R+AD+KS++ I+ E+K+LA+KAR GKL P E QGGTF+ISNLGMF    F  IINPPQ
Sbjct: 283 VIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQ 342

Query: 574 AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD 633
             IL VG       PV+         V   M L+LS DHRV +G     F  AL     D
Sbjct: 343 VAILGVGAI--EERPVVVGGEIV---VRPMMYLSLSYDHRVIDGAEAARFLVALKELLED 397

Query: 634 IRRLLL 639
             RLLL
Sbjct: 398 PERLLL 403

Length = 404

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score =  284 bits (730), Expect = 3e-88
 Identities = 155/555 (27%), Positives = 242/555 (43%), Gaps = 35/555 (6%)

Query: 99  SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
            +  + +W  KEGD +E    L  +ETDKAT+E  S   G + +I V  G   V VG  +
Sbjct: 14  VEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLL 72

Query: 159 A-ITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEM 217
           A I    A      PA     A A   ++        A    +A+      +     +++
Sbjct: 73  AVIEAAGAAAAAAAPA-----AAAAPAAAAAAAPAPAAAAPAAAAAAAGGGVVE---VKV 124

Query: 218 PALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKD 277
           P +   + +  + +W    GD +E    +  +ETDKAT+E      G + +I    G K 
Sbjct: 125 PDIG-EITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK- 182

Query: 278 VAVGQPIAITVEDPGDVG----------TVKNSVTSGAEVKGEKETHHDSKDVVKVQKGS 327
           V+VG  + + +E                    +  + A           +        G 
Sbjct: 183 VSVGSLLVV-IEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGK 241

Query: 328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSP 387
               SP+ + L  E G+D S ++ +G  G + K DV A +K    ++         + + 
Sbjct: 242 APHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAAA----AAAAAAAA 297

Query: 388 LPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLL 447
                  + P  K D       E  P ++I+K+ A  L  S    PH+    +  +  L 
Sbjct: 298 AGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLE 357

Query: 448 SFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAV 504
           + RK+LK   EK   K+++    IKAV  ALK  P  NA  D +  E+      +I  AV
Sbjct: 358 ALRKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAV 417

Query: 505 ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564
            T  GL+ P++++ D+KS+  I+ E+ ELA+KAR GKL P + QGG F+IS+LG      
Sbjct: 418 DTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISSLGGIGGTA 477

Query: 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFF 624
           F  IIN P+  IL VG+    ++PV      +       + L+LS DHRV +G     F 
Sbjct: 478 FTPIINAPEVAILGVGKS--QMKPV---WDGKEFVPRLMLPLSLSYDHRVIDGATAARFT 532

Query: 625 SALCSNFSDIRRLLL 639
           + L    +D RR+LL
Sbjct: 533 NYLKQLLADPRRMLL 547

Length = 547

>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain)

 Score =  254 bits (651), Expect = 6e-81
 Identities = 99/218 (45%), Positives = 132/218 (60%), Gaps = 9/218 (4%)

Query: 425 LLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHN---TKVSVNDIVIKAVAVALKNVPEA 481
           + ESKQ  PH  L+ +V +  LL+ R++LKE       K++  D ++KAVA+ALK  PE 
Sbjct: 1   MTESKQTIPHFTLTDEVDVTALLALREKLKEDAKKEGLKLTFLDFLVKAVALALKEFPEL 60

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           NA WD    EIV    ++I IAVAT  GL+ P++RNAD+KS+  I+ E+K+LAE+AR GK
Sbjct: 61  NASWD-GDAEIVYKKYVNIGIAVATPDGLIVPVIRNADRKSLLEIAKEIKDLAERARDGK 119

Query: 542 LAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVV 601
           L P + QGGTF+ISNLGMF V  F  IINPPQ  IL VG    + +  +  DG     + 
Sbjct: 120 LKPEDLQGGTFTISNLGMFGVTFFTPIINPPQVAILGVGA---IRKRPVVVDGE--IVIR 174

Query: 602 TKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
             M L+LS DHRV +G     F + L     +   LLL
Sbjct: 175 KVMPLSLSFDHRVIDGAEAARFLNDLKELLENPELLLL 212

These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain. Length = 212

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score =  254 bits (651), Expect = 2e-78
 Identities = 140/419 (33%), Positives = 204/419 (48%), Gaps = 60/419 (14%)

Query: 218 PALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKD 277
           P L  ++ +  IA W K  GD ++  +V+ EIETDK  LE      G L++ILA EG   
Sbjct: 8   PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-T 66

Query: 278 VAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKL 337
           V VGQ +    E     G    +  + A                   + S   +SP+A+ 
Sbjct: 67  VTVGQVLGRIDE-----GAAAGAAAAAAAAAAAAAAAPAQAQAAAAAEQSNDALSPAARK 121

Query: 338 LILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSP 397
           L  E+GLDAS+++ +G  G + K DVLAA+ +              +P+     +     
Sbjct: 122 LAAENGLDASAVKGTGKGGRVTKEDVLAALAAAA--------AAPAAPAAAAPAAAPAPL 173

Query: 398 GSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE-- 455
           G++ +       E  P T++RK IA RLLE++  T  L   ++V + P++  RK+ K+  
Sbjct: 174 GARPE-------ERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAF 226

Query: 456 --KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTP 513
             KH  K+      +KAV  ALK  PE NA  D +  +IV  +  DI IAV T +GL+ P
Sbjct: 227 EKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGD--DIVYHNYYDIGIAVGTPRGLVVP 284

Query: 514 IVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMF------PVDQFCA 567
           ++R+ADQ S + I  ++ ELA+KAR GKL+  E  GGTF+I+N G+F      P      
Sbjct: 285 VLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTP------ 338

Query: 568 IINPPQAGIL--------AVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGK 618
           IINPPQ+ IL         V    Q+V             +   M L LS DHR+ +GK
Sbjct: 339 IINPPQSAILGMHKIKERPVAVNGQIV-------------IRPMMYLALSYDHRIIDGK 384

Length = 407

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score =  231 bits (591), Expect = 1e-69
 Identities = 136/431 (31%), Positives = 217/431 (50%), Gaps = 38/431 (8%)

Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
           +++P L+ ++ +G +A+W K  GD ++  + I EIETDK  LE     +G L +IL  EG
Sbjct: 3   IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62

Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPS 334
              V  GQ +AI +E+  D      + +   + +    +   +      +       SP+
Sbjct: 63  DT-VESGQVLAI-LEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSL----SPA 116

Query: 335 AKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTA 394
           A+ L  EHG+D S++  +G  G + K D++   ++              S       + A
Sbjct: 117 ARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEA------------PASAQQPAPAAAA 164

Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK 454
            +P + +  E     E    T++R+ IA RL E++ +T  L   ++V +  ++  RK  K
Sbjct: 165 KAPANFTRPE-----ERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKRYK 219

Query: 455 E----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGL 510
           E    KH  K+      +KAV  ALK  PE NA   ++  +IV  D  DIS+AV+T++GL
Sbjct: 220 EEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAE--IDGDDIVYKDYYDISVAVSTDRGL 277

Query: 511 MTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIIN 570
           + P+VRNAD+ S + I  E+ +L +KAR GKL   +  GGTF+I+N G+F       IIN
Sbjct: 278 VVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIIN 337

Query: 571 PPQAGILAVGRGNQVVEPVIGSDGNETPAVVTK--MNLTLSADHRVFEGKVGGAFFSALC 628
           PPQ+ IL +   + + E  +  +G     +  +  M L LS DHR+ +GK    F   + 
Sbjct: 338 PPQSAILGM---HGIKERPVAVNGQ----IEIRPMMYLALSYDHRLIDGKEAVTFLVTIK 390

Query: 629 SNFSDIRRLLL 639
               D RRLLL
Sbjct: 391 ELLEDPRRLLL 401

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score =  222 bits (569), Expect = 3e-64
 Identities = 139/565 (24%), Positives = 236/565 (41%), Gaps = 53/565 (9%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           V +P +     +  + +   K GD +E    L  +E DKA++E  +   G + +I V  G
Sbjct: 108 VHVPDIGSD--EVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVG 165

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
            K V  G  I +  E A +     A  A  A A+  +          V++          
Sbjct: 166 DK-VSTGSLIMV-FEVAGE-----APAAAPAAAEAAAPAAAPAAAAGVKD---------- 208

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
                 + +P +     +  + +     GDK+E    +  +E DKA++E      G + +
Sbjct: 209 ------VNVPDIGGD--EVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKE 260

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDV-----GTVKNSVTSGAEVKGEK----ETHHDSKD 319
           I    G K V  G  I    E  G          + +  + A  K E             
Sbjct: 261 IKVNVGDK-VKTGSLIM-RFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAKAEGK 318

Query: 320 VVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSH 379
               +  ++   +P  + L  E G++ + ++ +G  G +LK DV A +K     +  +  
Sbjct: 319 SEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA 378

Query: 380 TEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSS 439
                          + P  K D       E+    +I+K+    L  +    PH+    
Sbjct: 379 AAAAGGGGPG-----LLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFD 433

Query: 440 DVVLDPLLSFRKE-----LKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVL 494
              +  L +FRK+      K K   K++    ++KAVA AL+ +P  N+    +   + L
Sbjct: 434 KADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTL 493

Query: 495 CDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSI 554
              ++I IAV T  GL+ P+ ++ ++K I  +S E+ ++++KAR GKL   + QGG F+I
Sbjct: 494 KKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTI 553

Query: 555 SNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRV 614
           S++G      F  I+N P+  IL V +    +EPV      +  A    + L+LS DHRV
Sbjct: 554 SSIGGLGTTHFTPIVNAPEVAILGVSK--SAMEPV---WNGKEFAPRLMLPLSLSYDHRV 608

Query: 615 FEGKVGGAFFSALCSNFSDIRRLLL 639
            +G  G  F + +    SDIRRL+L
Sbjct: 609 IDGADGARFITIINDRLSDIRRLVL 633

Length = 633

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score =  209 bits (532), Expect = 2e-59
 Identities = 147/566 (25%), Positives = 244/566 (43%), Gaps = 33/566 (5%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           V MPAL  ++++G +  W K  GD +E  + L E+ TDK   E  S   G L +I  PE 
Sbjct: 5   VKMPALGESVTEGTVTSWLKAVGDTVEADEPLLEVSTDKVDTEIPSPAAGVLLEIRAPE- 63

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
              V VG  +AI + +  +    PA  A   EA  +          A +  + +      
Sbjct: 64  DDTVEVGGVLAI-IGEPGEAGSEPAPAAPEPEAAPEPEAPAPAPTPAAEAPAPAAPQAGG 122

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
                 ++MP L  ++ +G +  W K  GD +EV + + E+ TDK   E      G L +
Sbjct: 123 SGEATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLE 182

Query: 269 ILAPE------GSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVV- 321
           I APE      G+    +G   A   E   +     +   S           H + D   
Sbjct: 183 IRAPEDDTVEVGTVLAIIGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPA 242

Query: 322 ----------------KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365
                                S   ++P  + L  + G+D S+++ +G  G + K DVLA
Sbjct: 243 PAPAPAKTAAPAAAAPVSSGDSGPYVTPLVRKLAKDKGVDLSTVKGTGVGGRIRKQDVLA 302

Query: 366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL 425
           A K+ + +   ++     +    P  +   +    + L  +         +IR++ A + 
Sbjct: 303 AAKAAEEARAAAAAPAAAAAPAAPAAAAKPAEPDTAKLRGTTQ----KMNRIRQITADKT 358

Query: 426 LESKQNTPHLYLSSDVVLDPLLSFRK----ELKEKHNTKVSVNDIVIKAVAVALKNVPEA 481
           +ES Q +  L    +V +  + + R     +  EK+   ++     ++AV  ALK  P  
Sbjct: 359 IESLQTSAQLTQVHEVDMTRVAALRARAKNDFLEKNGVNLTFLPFFVQAVTEALKAHPNV 418

Query: 482 NAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK 541
           NA ++ E  E+   D   + IAV T +GL+ P++ NA   S+  ++  + +LA +AR  K
Sbjct: 419 NASYNAETKEVTYHDVEHVGIAVDTPRGLLVPVIHNAGDLSLPGLAKAINDLAARARDNK 478

Query: 542 LAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVV 601
           L P E  GGTF+I+N+G         I+NPPQA IL  G   +    +   DG E+ A+ 
Sbjct: 479 LKPDELSGGTFTITNIGSGGALFDTPILNPPQAAILGTGAIVKRPRVIKDEDGGESIAIR 538

Query: 602 TKMNLTLSADHRVFEGKVGGAFFSAL 627
           +   L L+ DHR+ +G   G F + +
Sbjct: 539 SVCYLPLTYDHRLVDGADAGRFLTTI 564

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  191 bits (486), Expect = 3e-53
 Identities = 149/559 (26%), Positives = 246/559 (44%), Gaps = 62/559 (11%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA-ITVEDADD 167
           K GDK+E G  L  +E+DKA++E  S   G + +I V  G   +PVG  IA + V     
Sbjct: 22  KPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAGAQ 80

Query: 168 IQH-------IPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPAL 220
            Q           T    A A +  +     +   VQE +   I   E            
Sbjct: 81  AQAEAKKEAAPAPTAGAPAPAAQAQAAPAAGQSSGVQEVTVPDIGDIE------------ 128

Query: 221 SPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEF----------------ECLEEG 264
                +  + +     GD +     +  +E+DKA++E                 + +  G
Sbjct: 129 -----KVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDSVPTG 183

Query: 265 YLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQ 324
            L   L+  GS       P +          T      + A  K +      +       
Sbjct: 184 DLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQAPAPQQAG---TQN 240

Query: 325 KGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTS 384
                  +P+ + L  E G+D S+++ +G  G +L+ DV   +K   V ++ ++ +    
Sbjct: 241 PAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAAS-AAG 299

Query: 385 PSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLD 444
            +P         P    D       E+   ++IRK+    L  +    PH+       + 
Sbjct: 300 GAP------GALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADIT 353

Query: 445 PLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS 501
            + +FRK+     EK   K++V  I++KAVA ALK  P+ NA  D+   +++L   ++I 
Sbjct: 354 EMEAFRKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIG 413

Query: 502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFP 561
           +AV T  GL+ P++++ D+K I+ +++E+ +LA+KAR GKL P E QG  F+IS+LG   
Sbjct: 414 VAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISSLGGIG 473

Query: 562 VDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVG 620
              F  I+N P+  IL V +    +EPV   +G E  P ++  + L+LS DHRV +G   
Sbjct: 474 GTAFTPIVNAPEVAILGVSKS--GMEPVW--NGKEFEPRLM--LPLSLSYDHRVIDGADA 527

Query: 621 GAFFSALCSNFSDIRRLLL 639
             F + +C + +DIRRLLL
Sbjct: 528 ARFTTYICESLADIRRLLL 546

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model [Energy metabolism, Pyruvate dehydrogenase]. Length = 546

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score =  187 bits (477), Expect = 4e-53
 Identities = 120/440 (27%), Positives = 186/440 (42%), Gaps = 81/440 (18%)

Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
            V+++P +  ++++G + +W+K  GD ++  +VIC IETDK +++      G + KI A 
Sbjct: 45  KVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAE 104

Query: 273 EGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKIS 332
           EG   V VG P++    D G                   +   +     K +  + T   
Sbjct: 105 EGD-TVEVGAPLSEI--DTGGAPPAA-----APAAAAAAKA--EKTTPEKPKAAAPTPEP 154

Query: 333 PSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTS 392
           P+A                                      +         +  P P   
Sbjct: 155 PAAS--------------------------------KPTPPAAAKPPEPAPAAKPPPTPV 182

Query: 393 TAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE 452
               P               P +++R+ IA RL  S+     L   ++  +  L+  RKE
Sbjct: 183 ARADPRETR----------VPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELRKE 232

Query: 453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK 508
            K+    KH  K+      +KA  +ALK +P  NAY  ++  EIV  + +DIS+AVAT  
Sbjct: 233 YKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAY--IDGDEIVYRNYVDISVAVATPT 290

Query: 509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAI 568
           GL+ P++RN + KS + I  E+ +LAEKAR  KL   +  GGTF+ISN G+F       I
Sbjct: 291 GLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPI 350

Query: 569 INPPQAGIL--------AVGRGNQVV-EPVIGSDGNETPAVVTKMNLTLSADHRVFEGKV 619
           INPPQ+ IL         V  GN++V  P+              M L L+ DHR+ +G+ 
Sbjct: 351 INPPQSAILGMHAIKKRPVVVGNEIVIRPI--------------MYLALTYDHRLIDGRD 396

Query: 620 GGAFFSALCSNFSDIRRLLL 639
              F   +     D  R+LL
Sbjct: 397 AVTFLKKIKDLIEDPARMLL 416

Length = 418

>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional

 Score =  163 bits (414), Expect = 4e-45
 Identities = 108/339 (31%), Positives = 167/339 (49%), Gaps = 29/339 (8%)

Query: 293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQAS 352
           ++  V  S  +G   K + ET+ D+  V         +ISP AK + LEH +    +Q +
Sbjct: 22  NLYDVSGSGANGRVHKEDVETYKDTNVV---------RISPLAKRIALEHNIAWQEIQGT 72

Query: 353 GPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDF 412
           G  G ++K DVLA +     +  I S  +      +P   T                E  
Sbjct: 73  GHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYG-----------EIERI 121

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKEL----KEKHNTKVSVNDIVI 468
           P T +RKVIA+R++ES    P   L+ +V +  +L+ RK++     E    K +V D++ 
Sbjct: 122 PMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLS 181

Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
            AV   L   P  NA    +   I+  + +++++AV  + GLMTP+V NA++ S+S + +
Sbjct: 182 LAVVKTLMKHPYINASLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVV 241

Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
             K++  +   GKLAP E Q  TF+ISNLGMF V  F  IIN P + IL V   + + +P
Sbjct: 242 AFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQSFGPIINQPNSAILGV--SSTIEKP 299

Query: 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
           V+    N    +   M+L L+ DHRV +G  G  F   L
Sbjct: 300 VV---VNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDL 335

Length = 347

>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

 Score =  165 bits (418), Expect = 5e-44
 Identities = 67/141 (47%), Positives = 95/141 (67%), Gaps = 5/141 (3%)

Query: 75  VRHFSS-SELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFE 133
            R FSS S+LP H  +GMP+LSPTM++GNIA+W KKEGDK+  G++LCE+ETDKATVE E
Sbjct: 100 ARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEME 159

Query: 134 SLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHI----PATIAGGAEAKEQSSTHQ 189
            +EEG+LAKI+  +G+K++ VG+ IAITVE+ +DI       P++ A  A  K + S   
Sbjct: 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPP 219

Query: 190 DVKKEAVQETSASRINTSELP 210
             ++E  +  S+     S+  
Sbjct: 220 PKEEEVEKPASSPEPKASKPS 240

Length = 539

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score =  161 bits (410), Expect = 9e-44
 Identities = 109/401 (27%), Positives = 188/401 (46%), Gaps = 40/401 (9%)

Query: 231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQP-IAITVE 289
           +W   EGD++E    +CE+++DKAT+E     +G +A+I    G   V VG+  + I VE
Sbjct: 17  RWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVE 75

Query: 290 DPGDVG-------TVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEH 342
           D   +        T  +++ S AE                    S    +P+ + L  ++
Sbjct: 76  DSQHLRSDSLLLPTDSSNIVSLAESDERGSNL------------SGVLSTPAVRHLAKQY 123

Query: 343 GLDASSLQASGPYGTLLKGDVLA-AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKS 401
           G+D + +  +G  G +LK DVL  A + G V    S+     +      TS +       
Sbjct: 124 GIDLNDILGTGKDGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVS------- 176

Query: 402 DLELSDSFED--FPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR---KELKEK 456
                 S+ED   P    ++ + + +  + +  PH +   ++ +D L+  +   +E    
Sbjct: 177 -TPTEQSYEDKTIPLRGFQRAMVKTMTAAAK-VPHFHYVEEINVDALVELKASFQENNTD 234

Query: 457 HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVR 516
              K +    +IK++++AL   P  N+ ++ E  EI L  + +I +A+ATE GL+ P ++
Sbjct: 235 PTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIK 294

Query: 517 NADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGI 576
           N    S+  I+ E+  L   A   KL P +  GGT ++SN+G         ++N P+  I
Sbjct: 295 NVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAI 354

Query: 577 LAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEG 617
           +A+GR  +V   V   DGN  PA +  M +T+ ADHRV +G
Sbjct: 355 IALGRIQKVPRFV--DDGNVYPASI--MTVTIGADHRVLDG 391

Length = 416

>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed

 Score =  145 bits (368), Expect = 4e-39
 Identities = 97/300 (32%), Positives = 150/300 (50%), Gaps = 15/300 (5%)

Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLP 389
             +P A+ L  + G+D S L+ SG  G +L  DV   IKS K +    +  E  S S   
Sbjct: 3   LATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAP---TPAEAASVSSAQ 59

Query: 390 QTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSF 449
           Q +   +P +    +L    E      IRK IAR +  S  N  ++ L +++ +  L   
Sbjct: 60  QAAKTAAPAAAPP-KLEGKRE--KVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDL 116

Query: 450 RKELKEK----HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVA 505
           RK +K+        K++    + KA+ +ALK  P   A +D    E+V  D +++ IAV 
Sbjct: 117 RKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATSELVYPDTLNLGIAVD 176

Query: 506 TEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565
           TE GLM P+++NA + SI  I+ E+  LA+ AR  K+ P E +GG+F+I+N G       
Sbjct: 177 TEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLYG 236

Query: 566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
             +IN P+  I  VG    +++  I  +G      V  M+LT++ADHR  +G   G F S
Sbjct: 237 VPVINYPELAIAGVG---AIIDKAIVKNGQIVAGKV--MHLTVAADHRWIDGATIGRFAS 291

Length = 306

>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

 Score =  144 bits (364), Expect = 2e-37
 Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 9/133 (6%)

Query: 88  VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE 147
            + MPALSPTM+ GN+AKW KKEGDK+  GD++ EIETDKAT+EFE++EEG+LAKILVPE
Sbjct: 1   KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPE 60

Query: 148 GSKDVPVGQPIAITVEDADDIQHI-----PATIAGGAE---AKEQSSTHQDVKK-EAVQE 198
           G+KDVPV +PIA+ VE+ +D+          + A  A        ++     K   A Q+
Sbjct: 61  GTKDVPVNKPIAVLVEEKEDVADAFKNYKLESSASPAPKPSEIAPTAPPSAPKPSPAPQK 120

Query: 199 TSASRINTSELPP 211
            S    + + L  
Sbjct: 121 QSPEPSSPAPLSD 133

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score [Energy metabolism, Pyruvate dehydrogenase]. Length = 436

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  138 bits (350), Expect = 3e-35
 Identities = 51/112 (45%), Positives = 70/112 (62%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           MPALSPTM +G +AKW KKEGDK++ GD++ EIETDKAT+E E+++EG L KILVPEG++
Sbjct: 7   MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTE 66

Query: 151 DVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSAS 202
            V V  PIA+ +E+ +      A  A  AEA   +              + +
Sbjct: 67  GVKVNTPIAVLLEEGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPA 118

Length = 464

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score =  129 bits (326), Expect = 3e-32
 Identities = 115/427 (26%), Positives = 191/427 (44%), Gaps = 65/427 (15%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +  ++  G +A + K  G++++  + I +IETDK T++      G + + L  EG  
Sbjct: 96  VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD- 154

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAK 336
                     TVE    V  +  S  + ++V   +          K+ + +  K SP A+
Sbjct: 155 ----------TVEPGTKVAIISKSEDAASQVTPSQ----------KIPETTDPKPSPPAE 194

Query: 337 LLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS 396
                                          +  KV S   +   K   SP P   +A  
Sbjct: 195 -----------------------------DKQKPKVESAPVAEKPKAPSSPPPPKQSAKE 225

Query: 397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK-- 454
           P     L   +     P T++RK +A RL +S+     L   ++V +  L+  R + K  
Sbjct: 226 P----QLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDA 281

Query: 455 --EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMT 512
             EKH  K+ +    IKA   AL++ P  NA  D +  +I+  D +DISIAV T KGL+ 
Sbjct: 282 FYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGD--DIIYRDYVDISIAVGTSKGLVV 339

Query: 513 PIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP 572
           P++R AD+ + + I   +  LA+KA  G ++  E  GG+F++SN G++       IINPP
Sbjct: 340 PVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPP 399

Query: 573 QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFS 632
           Q+ IL +   + +V   +   G+  P  +  M + L+ DHR+ +G+    F   +     
Sbjct: 400 QSAILGM---HSIVSRPMVVGGSVVPRPM--MYVALTYDHRLIDGREAVYFLRRVKDVVE 454

Query: 633 DIRRLLL 639
           D +RLLL
Sbjct: 455 DPQRLLL 461

Length = 463

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score =  128 bits (325), Expect = 7e-32
 Identities = 48/90 (53%), Positives = 62/90 (68%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MPALSPTM +G +AKW K EGDK++ GDVI EIETDKAT+E E ++EG L KIL PEG++
Sbjct: 7   MPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTE 66

Query: 277 DVAVGQPIAITVEDPGDVGTVKNSVTSGAE 306
            V V  PIA+ +E+         +  + AE
Sbjct: 67  GVKVNTPIAVLLEEGESASDAGAAPAAAAE 96

Length = 464

>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

 Score =  120 bits (303), Expect = 2e-29
 Identities = 43/129 (33%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           MP L   M++G I +W  K GD ++ G  L E+ETDKATVE  S   G +AK+LV EG  
Sbjct: 7   MPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV 66

Query: 151 DVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELP 210
            VPVG  IA+  E+ +      A  A  A  +  +         A     A+    +   
Sbjct: 67  -VPVGSVIAVIEEEGEA----EAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPA 121

Query: 211 PRVVLEMPA 219
                  PA
Sbjct: 122 AAAAKASPA 130

Length = 411

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  106 bits (267), Expect = 8e-28
 Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 1/74 (1%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
           T + MP L  +M++G I +W  KEGD +E GD+L E+ETDKATVE E+   G LAKILV 
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 147 EGSKDVPVGQPIAI 160
           EG   VPVGQ IA+
Sbjct: 61  EGDT-VPVGQVIAV 73

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

 Score =  100 bits (253), Expect = 5e-26
 Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 1/74 (1%)

Query: 213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP 272
             ++MP L  +M +G I +W   EGD +E GDV+ E+ETDKAT+E E    G LAKIL  
Sbjct: 1   TEIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVE 60

Query: 273 EGSKDVAVGQPIAI 286
           EG   V VGQ IA+
Sbjct: 61  EGDT-VPVGQVIAV 73

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue. Length = 74

>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

 Score =  104 bits (261), Expect = 6e-24
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 7/132 (5%)

Query: 85  SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144
               + MP L  TM++G I +W KK GDK++ GD+L E+ETDKAT+E  + + G LAKIL
Sbjct: 1   MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKIL 60

Query: 145 VPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRI 204
           V EG   VPVG  IA   E+  D        A      E ++             +A R+
Sbjct: 61  VEEGDT-VPVGAVIARIEEEGADAP------AAAEAPPEPAAAAPASAPATAASAAAGRV 113

Query: 205 NTSELPPRVVLE 216
             S    R+  E
Sbjct: 114 LASPAVRRLARE 125

Length = 404

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 83.8 bits (208), Expect = 3e-17
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 2/80 (2%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
           T + MP    +M++G +A W  +EGD++E GD L ++ETDK T E E+   G L + +  
Sbjct: 3   TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQ 62

Query: 147 EGSKDVPVGQPIAITVEDAD 166
           EG   +PVG  +A+ V DA+
Sbjct: 63  EGE-TLPVGALLAV-VADAE 80

Length = 371

>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 2/76 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP    +M +G +A W   EGD++E GD + ++ETDK T E E    G L + +A EG  
Sbjct: 7   MPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE- 65

Query: 277 DVAVGQPIAITVEDPG 292
            + VG  +A+ V D  
Sbjct: 66  TLPVGALLAV-VADAE 80

Length = 371

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 2/74 (2%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
           T +  P +  ++ +G  A+W  K GDK++ G +LCE+E  K  +E  +   G + +ILV 
Sbjct: 1   TEIKSPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVK 59

Query: 147 EGSKDVPVGQPIAI 160
           EG   V VG P+A 
Sbjct: 60  EGDT-VEVGDPLAK 72

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P L+  +  G + KW KK GDK++ GD+L EIE  KAT + E+ + G + K+LV EG
Sbjct: 2   ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEG 61

Query: 149 SKDVPVGQPI 158
           +K V    P+
Sbjct: 62  TK-VEGDTPL 70

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 74.4 bits (183), Expect = 4e-14
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P L+ ++++G +A+W KK GD ++  + + EIETDK  +E  S  +G L +IL  EG
Sbjct: 3   IKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEG 62

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
              V  GQ +AI  E  D     PA     +  +++ +             +A+R + S 
Sbjct: 63  DT-VESGQVLAILEEGNDATAAPPA----KSGEEKEETPAASAAAA--PTAAANRPSLSP 115

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKI 240
              R+  E   +  +   G     R  + D I
Sbjct: 116 AARRLAKE-HGIDLSAVPGTGVTGRVTKEDII 146

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated

 Score = 74.1 bits (183), Expect = 5e-14
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 6/111 (5%)

Query: 92  PALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKD 151
           P L  ++++  IA W KK GD ++  ++L EIETDK  +E  +   G L++IL  EG   
Sbjct: 8   PTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-T 66

Query: 152 VPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSAS 202
           V VGQ +    E A          A  A A   ++      + A     ++
Sbjct: 67  VTVGQVLGRIDEGAA-----AGAAAAAAAAAAAAAAAPAQAQAAAAAEQSN 112

Length = 407

>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

 Score = 73.9 bits (182), Expect = 1e-13
 Identities = 51/232 (21%), Positives = 86/232 (37%), Gaps = 27/232 (11%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P +     +  + +   K GDK+E    L  +E DKA++E  S + G + +I V  G
Sbjct: 5   IKVPDIGAD--EVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVG 62

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
            K V  G  I I               A  A A+ +       KKEA    + +    + 
Sbjct: 63  DK-VETGALIMIFESADGA--------ADAAPAQAEE------KKEAAPAAAPA---AAA 104

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
                 + +P +     +  + +     GD +E    +  +E DKA++E      G + +
Sbjct: 105 A---KDVHVPDIGSD--EVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKE 159

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDV 320
           I    G K V+ G  I +  E  G+      +    A            KDV
Sbjct: 160 IKVNVGDK-VSTGSLIMV-FEVAGEAPAAAPAAAEAAAPAAAPAAAAGVKDV 209

Length = 633

>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme

 Score = 63.0 bits (154), Expect = 1e-12
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
            P +  ++ +G  A+W    GDK++ G V+CE+E  K  +E      G + +IL  EG  
Sbjct: 5   SPMIGESVKEGT-AEWLVKVGDKVKAGQVLCEVEAMKMEMEIPAPVAGVVKEILVKEGDT 63

Query: 277 DVAVGQPIAI 286
            V VG P+A 
Sbjct: 64  -VEVGDPLAK 72

This family covers two Prosite entries, the conserved lysine residue binds biotin in one group and lipoic acid in the other. Note that the HMM does not currently recognise the Glycine cleavage system H proteins. Length = 73

>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

 Score = 61.7 bits (150), Expect = 3e-12
 Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 1/67 (1%)

Query: 218 PALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKD 277
           P L+  +  G + KW K  GDK++ GDV+ EIE  KAT + E  + G + K+L  EG+K 
Sbjct: 5   PDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK- 63

Query: 278 VAVGQPI 284
           V    P+
Sbjct: 64  VEGDTPL 70

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue. Length = 73

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 87  TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP 146
            V+ +P +  ++S+G + +W+KK GD ++  +++C IETDK +V+  +   G + KI   
Sbjct: 45  KVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAE 104

Query: 147 EGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINT 206
           EG   V VG P++    D       PA     A A +   T  +  K A         + 
Sbjct: 105 EGD-TVEVGAPLSEI--DTGGAP--PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASK 159

Query: 207 SELPPRVVLEMPALSPTMNQGNIA 230
              P       PA +       +A
Sbjct: 160 PTPPAAAKPPEPAPAAKPPPTPVA 183

Length = 418

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 60.3 bits (147), Expect = 2e-09
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 460 KVSVNDIVIKAVAVALKNVPEANAYWDVEKGE--IVLCDAIDISIAVATEK-----GLMT 512
           KVS   ++  A+  ALK  P  N ++    G+  +V    +++ +A+   K      L+ 
Sbjct: 169 KVSFTHLIGYALVQALKAFPNMNRHYAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVV 228

Query: 513 PIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP 572
           P ++ A+    +      +++  +AR GKL   +FQG T S++N G          +   
Sbjct: 229 PAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPGGIGTVHSVPRLMKG 288

Query: 573 QAGILAVGRGNQVVEPVIGSDGNETPAVVTK-MNLTLSADHRVFEGKVGGAF 623
           Q  I+ VG      E    S+       ++K M LT + DHR+ +G   G F
Sbjct: 289 QGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEF 340

Length = 1228

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 57.1 bits (137), Expect = 1e-08
 Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 71  MQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATV 130
           +Q  VR FSS    +   V +P +  +++ G +A + KK G++++  + + +IETDK T+
Sbjct: 77  LQRWVRPFSSESGDTVEAV-VPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTI 135

Query: 131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHI-PATIAGGAEAKEQSSTHQ 189
           +  S   G + + LV EG    P G  +AI  +  D    + P+         + S   +
Sbjct: 136 DIASPASGVIQEFLVKEGDTVEP-GTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAE 194

Query: 190 DVKKEAVQETSAS---RINTSELPPRVVLEMPALSP 222
           D +K  V+    +   +  +S  PP+   + P L P
Sbjct: 195 DKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPP 230

Length = 463

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 55.0 bits (132), Expect = 9e-08
 Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 2/114 (1%)

Query: 85  SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL 144
             T V MP L  ++++G +  W K  GD +E+ + L E+ TDK   E  S   G L +I 
Sbjct: 125 EATEVKMPELGESVTEGTVTSWLKAVGDTVEVDEPLLEVSTDKVDTEIPSPVAGTLLEIR 184

Query: 145 VPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQE 198
            PE    V VG  +AI + DA+     PA     A ++  S    D    A   
Sbjct: 185 APE-DDTVEVGTVLAI-IGDANAAPAEPAEEEAPAPSEAGSEPAPDPAARAPHA 236

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 48.3 bits (116), Expect = 1e-05
 Identities = 39/157 (24%), Positives = 56/157 (35%), Gaps = 8/157 (5%)

Query: 132 FESLEEGFLAKILVPEGSKDVPV-GQPIAITVEDADDIQHIPATIAG-GAEAKEQSSTHQ 189
            E  E G L     P+ +      G P    VE   +   +   I G  AE K       
Sbjct: 439 LEEREAGELKPEPEPKEAAAAGAEGIPTEFKVEVDGEKYEVK--IEGVKAEGKRPFYLRV 496

Query: 190 DVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEI 249
           D   E V       I     P        A++  M  G + K +  EGDK++ GD +  +
Sbjct: 497 DGMPEEVVVEPLKEIVVGGRPRASAPG--AVTSPM-PGTVVKVKVKEGDKVKAGDTVLVL 553

Query: 250 ETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           E  K   E +   +G + +IL  EG   V  G  +  
Sbjct: 554 EAMKMENEIQAPVDGTVKEILVKEG-DRVNPGDVLME 589

Length = 592

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA 159
            G + K   KEGDK+E G  L  +E  K   E  +   G + +ILV EG + V  GQ + 
Sbjct: 7   PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLV 65

Query: 160 I 160
           +
Sbjct: 66  V 66

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|202412 pfam02817, E3_binding, e3 binding domain

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA 365
              SP+A+ L  E G+D S ++ +GP G + K DVLA
Sbjct: 3   VFASPAARKLAAEKGIDLSQVKGTGPGGRITKEDVLA 39

This family represents a small domain of the E2 subunit of 2-oxo-acid dehydrogenases responsible for the binding of the E3 subunit. Length = 39

>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQP-IAITVE 163
           +W  KEGD++E    LCE+++DKAT+E  S  +G +A+I    G   V VG+  + I VE
Sbjct: 17  RWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVE 75

Query: 164 DADDIQHIPAT-------IAGGAEAKEQSSTHQDV 191
           D+  ++            I   AE+ E+ S    V
Sbjct: 76  DSQHLRSDSLLLPTDSSNIVSLAESDERGSNLSGV 110

Length = 416

>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

 Score = 40.5 bits (96), Expect = 9e-05
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G + K    EGDK+E G  +  +E  K   E      G + +IL  EG + V  GQ + 
Sbjct: 7   PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLV 65

Query: 286 I 286
           +
Sbjct: 66  V 66

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine. Length = 67

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
           G + K   + GD ++ G  L  IE  K   E E+  +G + +ILV  G   V  G P+A+
Sbjct: 79  GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAV 137

Length = 140

>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism]

 Score = 38.9 bits (91), Expect = 0.001
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 189 QDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICE 248
                 A Q  +++                  SP    G + K     GD ++ G  +  
Sbjct: 46  SSPSAAAAQPAASAPAPAPAAAA---GGTQVTSPM--VGTVYKPFVEVGDTVKAGQTLAI 100

Query: 249 IETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           IE  K   E E   +G + +IL   G   V  G P+A+
Sbjct: 101 IEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAV 137

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	639
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	100.0
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	100.0
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	100.0
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	100.0
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	100.0
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	100.0
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	100.0
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	100.0
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	100.0
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	100.0
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	100.0
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	100.0
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	100.0
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	100.0
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	100.0
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	100.0
PRK11857	306	dihydrolipoamide acetyltransferase; Reviewed	100.0
PF00198	231	2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe	100.0
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	100.0
PRK13757	219	chloramphenicol acetyltransferase; Provisional	99.95
PF00302	206	CAT: Chloramphenicol acetyltransferase; InterPro:	99.95
PRK11854	633	aceF pyruvate dehydrogenase dihydrolipoyltransacet	99.94
COG4845	219	Chloramphenicol O-acetyltransferase [Defense mecha	99.88
KOG0557	470	consensus Dihydrolipoamide acetyltransferase [Ener	99.85
COG0508	404	AceF Pyruvate/2-oxoglutarate dehydrogenase complex	99.8
PLN02226	463	2-oxoglutarate dehydrogenase E2 component	99.76
KOG0559	457	consensus Dihydrolipoamide succinyltransferase (2-	99.74
PLN02744	539	dihydrolipoyllysine-residue acetyltransferase comp	99.71
PTZ00144	418	dihydrolipoamide succinyltransferase; Provisional	99.71
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.71
PRK05704	407	dihydrolipoamide succinyltransferase; Validated	99.66
PF00364	74	Biotin_lipoyl: Biotin-requiring enzyme; InterPro:	99.66
TIGR01347	403	sucB 2-oxoglutarate dehydrogenase complex dihydrol	99.64
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.63
PRK06748	83	hypothetical protein; Validated	99.62
PRK14875	371	acetoin dehydrogenase E2 subunit dihydrolipoyllysi	99.61
PRK06748	83	hypothetical protein; Validated	99.58
TIGR02927	590	SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo	99.57
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.57
TIGR01348	546	PDHac_trf_long pyruvate dehydrogenase complex dihy	99.52
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.5
PLN02528	416	2-oxoisovalerate dehydrogenase E2 component	99.48
PRK11892	464	pyruvate dehydrogenase subunit beta; Provisional	99.48
PRK11856	411	branched-chain alpha-keto acid dehydrogenase subun	99.46
TIGR01349	435	PDHac_trf_mito pyruvate dehydrogenase complex dihy	99.45
PRK11855	547	dihydrolipoamide acetyltransferase; Reviewed	99.45
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.42
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.39
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.38
PRK05889	71	putative acetyl-CoA carboxylase biotin carboxyl ca	99.34
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.31
cd06663	73	Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar	99.29
COG0511	140	AccB Biotin carboxyl carrier protein [Lipid metabo	99.29
PRK06549	130	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.27
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.24
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.22
PRK05641	153	putative acetyl-CoA carboxylase biotin carboxyl ca	99.21
PRK08225	70	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.21
PRK07051	80	hypothetical protein; Validated	99.19
PF02817	39	E3_binding: e3 binding domain; InterPro: IPR004167	99.17
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	99.16
KOG0558	474	consensus Dihydrolipoamide transacylase (alpha-ket	99.15
PLN02983	274	biotin carboxyl carrier protein of acetyl-CoA carb	99.15
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.15
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	99.09
TIGR00531	156	BCCP acetyl-CoA carboxylase, biotin carboxyl carri	99.07
PRK07051	80	hypothetical protein; Validated	99.06
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	99.03
PRK14042	596	pyruvate carboxylase subunit B; Provisional	99.02
PRK06302	155	acetyl-CoA carboxylase biotin carboxyl carrier pro	98.97
cd06850	67	biotinyl_domain The biotinyl-domain or biotin carb	98.95
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.92
PRK14042	596	pyruvate carboxylase subunit B; Provisional	98.9
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.83
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.83
cd06849	74	lipoyl_domain Lipoyl domain of the dihydrolipoyl a	98.8
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.79
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	98.78
TIGR02712	1201	urea_carbox urea carboxylase. Members of this fami	98.7
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.69
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	98.64
PRK14040	593	oxaloacetate decarboxylase; Provisional	98.6
PRK12999	1146	pyruvate carboxylase; Reviewed	98.57
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.54
PRK09282	592	pyruvate carboxylase subunit B; Validated	98.42
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.41
PRK12999	1146	pyruvate carboxylase; Reviewed	98.29
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	98.28
COG4770	645	Acetyl/propionyl-CoA carboxylase, alpha subunit [L	98.25
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	98.18
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	98.12
cd06848	96	GCS_H Glycine cleavage H-protein. Glycine cleavage	97.94
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.81
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	97.79
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	97.76
PRK00624	114	glycine cleavage system protein H; Provisional	97.71
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	97.68
PRK13380	144	glycine cleavage system protein H; Provisional	97.6
TIGR03077	110	not_gcvH glycine cleavage protein H-like protein,	97.57
PRK09783	409	copper/silver efflux system membrane fusion protei	97.54
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.52
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	97.49
PRK01202	127	glycine cleavage system protein H; Provisional	97.47
PRK00624	114	glycine cleavage system protein H; Provisional	97.44
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	97.38
PRK12784	84	hypothetical protein; Provisional	97.38
PRK10476	346	multidrug resistance protein MdtN; Provisional	97.36
KOG0238	670	consensus 3-Methylcrotonyl-CoA carboxylase, biotin	97.29
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	97.2
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	97.2
PRK13380	144	glycine cleavage system protein H; Provisional	97.18
PRK15136	390	multidrug efflux system protein EmrA; Provisional	97.17
PRK03598	331	putative efflux pump membrane fusion protein; Prov	97.12
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	97.04
PRK09783	409	copper/silver efflux system membrane fusion protei	97.04
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	97.0
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	96.99
PRK01202	127	glycine cleavage system protein H; Provisional	96.97
KOG0368	2196	consensus Acetyl-CoA carboxylase [Lipid transport	96.97
PRK09859	385	multidrug efflux system protein MdtE; Provisional	96.96
PRK10559	310	p-hydroxybenzoic acid efflux subunit AaeA; Provisi	96.89
TIGR01730	322	RND_mfp RND family efflux transporter, MFP subunit	96.83
PRK10476	346	multidrug resistance protein MdtN; Provisional	96.79
PRK11578	370	macrolide transporter subunit MacA; Provisional	96.77
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	96.76
PRK14843	347	dihydrolipoamide acetyltransferase; Provisional	96.74
TIGR00527	127	gcvH glycine cleavage system H protein. The genome	96.69
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.62
PRK15136	390	multidrug efflux system protein EmrA; Provisional	96.55
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	96.51
PF13533	50	Biotin_lipoyl_2: Biotin-lipoyl like	96.45
PRK03598	331	putative efflux pump membrane fusion protein; Prov	96.37
PRK09578	385	periplasmic multidrug efflux lipoprotein precursor	96.34
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	96.31
PRK15030	397	multidrug efflux system transporter AcrA; Provisio	96.11
PRK09859	385	multidrug efflux system protein MdtE; Provisional	96.08
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	96.04
PF01597	122	GCV_H: Glycine cleavage H-protein; InterPro: IPR00	96.03
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	95.96
PRK12784	84	hypothetical protein; Provisional	95.75
PRK11556	415	multidrug efflux system subunit MdtA; Provisional	95.69
COG0509	131	GcvH Glycine cleavage system H protein (lipoate-bi	95.69
PRK11578	370	macrolide transporter subunit MacA; Provisional	95.67
PF12700	328	HlyD_2: HlyD family secretion protein; PDB: 3LNN_B	95.56
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	95.03
TIGR03309	256	matur_yqeB selenium-dependent molybdenum hydroxyla	94.33
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	94.29
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	94.13
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	93.65
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	93.54
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	93.46
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	93.36
PF13375	101	RnfC_N: RnfC Barrel sandwich hybrid domain	93.05
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	92.61
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	92.44
PF13437	105	HlyD_3: HlyD family secretion protein	92.18
cd06251	287	M14_ASTE_ASPA_like_1 A functionally uncharacterize	91.67
cd06253	298	M14_ASTE_ASPA_like_3 A functionally uncharacterize	91.48
PF00529	305	HlyD: HlyD family secretion protein the correspond	91.43
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	90.98
PF13437	105	HlyD_3: HlyD family secretion protein	90.85
COG3608	331	Predicted deacylase [General function prediction o	90.26
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	90.24
cd06250	359	M14_PaAOTO_like An uncharacterized subgroup of the	90.2
COG3608	331	Predicted deacylase [General function prediction o	90.08
TIGR02946	446	acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b	89.98
cd06252	316	M14_ASTE_ASPA_like_2 A functionally uncharacterize	89.86
COG1726	447	NqrA Na+-transporting NADH:ubiquinone oxidoreducta	89.5
PF05896	257	NQRA: Na(+)-translocating NADH-quinone reductase s	89.38
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	89.3
PF07247	480	AATase: Alcohol acetyltransferase; InterPro: IPR01	89.1
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	88.23
TIGR02994	325	ectoine_eutE ectoine utilization protein EutE. Mem	87.79
PRK14844	2836	bifunctional DNA-directed RNA polymerase subunit b	87.67
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	87.55
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	87.11
TIGR03794	421	NHPM_micro_HlyD NHPM bacteriocin system secretion	87.06
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	86.46
PF00529	305	HlyD: HlyD family secretion protein the correspond	86.25
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	86.14
PF09891	150	DUF2118: Uncharacterized protein conserved in arch	85.21
TIGR01945	435	rnfC electron transport complex, RnfABCDGE type, C	84.59
KOG3373	172	consensus Glycine cleavage system H protein (lipoa	84.44
TIGR00999	265	8a0102 Membrane Fusion Protein cluster 2 (function	84.06
PRK05352	448	Na(+)-translocating NADH-quinone reductase subunit	83.98
cd06254	288	M14_ASTE_ASPA_like_4 A functionally uncharacterize	83.97
TIGR01936	447	nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo	83.1
PF07831	75	PYNP_C: Pyrimidine nucleoside phosphorylase C-term	82.23
cd06255	293	M14_ASTE_ASPA_like_5 A functionally uncharacterize	81.5
COG0845	372	AcrA Membrane-fusion protein [Cell envelope biogen	80.3

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=100.00  E-value=2.5e-101  Score=870.49  Aligned_cols=544  Identities=27%  Similarity=0.405  Sum_probs=415.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~  166 (639)
                      +.|.||++|++|.||+|++|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++||. |++|+.|+.|+..++
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd~-v~vG~~ia~i~~~~~   81 (590)
T TIGR02927         3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDDT-VDIGGEIAIIGEAGE   81 (590)
T ss_pred             eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCCE-EeeeeeEEEEeeccc
Confidence            6799999999999999999999999999999999999999999999999999999999999999 999999999976443


Q ss_pred             ccccccccccCCcccccccccc---cccc-hhhhcc-cccc---ccCCCCCCCceeeecCCCCCcccccccceeecCCCC
Q 006594          167 DIQHIPATIAGGAEAKEQSSTH---QDVK-KEAVQE-TSAS---RINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGD  238 (639)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~-~~~~---~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd  238 (639)
                      ....+.......+..+...+..   .... +.+... ..++   ..+........++.||+||++|++|+|++|+|++||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd  161 (590)
T TIGR02927        82 ASAEAGAEDSAAAAEPEEAPAEEAPKEEPKAAPAESVEQAPAESSAPSQGGGAATDIEMPELGESVTEGTITQWLKAVGD  161 (590)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEcCCCCCCcceEEEEEEEeCCCC
Confidence            2111111000000000000000   0000 000000 0000   001111123478999999999999999999999999


Q ss_pred             ccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCc-C--CCC-C-------CCccc
Q 006594          239 KIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTV-K--NSV-T-------SGAEV  307 (639)
Q Consensus       239 ~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~-~--~~~-~-------~~~~~  307 (639)
                      .|++||+||+|||||+++||+|+++|+|.+|++++|+. |++|++|++|.+++++..+. .  ... .       ..+.+
T Consensus       162 ~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (590)
T TIGR02927       162 KIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGDAGAAAAEDAKAEEEAEAKAEAKPEEKPDP  240 (590)
T ss_pred             EecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccccccccccccccccCCCCcc
Confidence            99999999999999999999999999999999999999 99999999997654432110 0  000 0       00000


Q ss_pred             CCC-C--CCC---C----CCcccc---c--cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594          308 KGE-K--ETH---H----DSKDVV---K--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (639)
Q Consensus       308 ~~~-~--~~~---~----~~~~~~---~--~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~  372 (639)
                      ..+ .  ..+   .    ..+..+   .  ......+++||+||+||+|+||||+.|+|||++|||+++||++|+.....
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~  320 (590)
T TIGR02927       241 KKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKA  320 (590)
T ss_pred             ccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcCCCHHHCCCCCCCCeEeHHHHHHHHhcccc
Confidence            000 0  000   0    000000   0  00112356899999999999999999999999999999999999753211


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (639)
Q Consensus       373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~  452 (639)
                      .. ..++.............+ ...+ .+.. ....++++|+++|||.||++|++|++++||||++.+||+|+|+++|++
T Consensus       321 ~~-~~~~~~~~~~~~~~~~~~-~~~~-~~~~-~~~~~~~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~R~~  396 (590)
T TIGR02927       321 AA-EAPAAEAAAAAPAAAAAA-SASP-APAK-AHLRGTTQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAALRAR  396 (590)
T ss_pred             cc-ccccccccccCccccccc-cCCC-cccc-ccccCceeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHHHHH
Confidence            00 000000000000000000 0000 0000 001245679999999999999999999999999999999999999999


Q ss_pred             Hhhh----CCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594          453 LKEK----HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM  528 (639)
Q Consensus       453 ~~~~----~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~  528 (639)
                      +|+.    +|.|+||++||+||+++||++||.||++|+++.++|++|+++||||||++++||++|||++++.++|.+|++
T Consensus       397 l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia~  476 (590)
T TIGR02927       397 AKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAK  476 (590)
T ss_pred             HHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEEEECCCCcEecccCCcccCCHHHHHH
Confidence            9842    478999999999999999999999999998654579999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594          529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL  608 (639)
Q Consensus       529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl  608 (639)
                      ++++|.+++|+|+|+++||+||||||||||+||+++|+||||+||+|||++|++.++|+++++++|.+.+++|++|+|||
T Consensus       477 ~i~~l~~kAr~gkL~p~e~~GgTfTISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsl  556 (590)
T TIGR02927       477 AIADIAARARNGKLKPDDLAGGTFTITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPL  556 (590)
T ss_pred             HHHHHHHHHHcCCCChHHhCCCeEEEECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEee
Confidence            99999999999999999999999999999999999999999999999999999999998875334434599999999999


Q ss_pred             EecccccChHHHHHHHHHHHHHHhchhh
Q 006594          609 SADHRVFEGKVGGAFFSALCSNFSDIRR  636 (639)
Q Consensus       609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~  636 (639)
                      +||||||||+++++||++|+++||||..
T Consensus       557 s~DHRviDGa~aa~Fl~~lk~~LE~~~~  584 (590)
T TIGR02927       557 TYDHQLIDGADAGRFLTTIKDRLEEAAF  584 (590)
T ss_pred             eccchhcCcHHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999873

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=7.1e-97  Score=828.42  Aligned_cols=528  Identities=26%  Similarity=0.390  Sum_probs=410.6

Q ss_pred             EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCcc
Q 006594           88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD  167 (639)
Q Consensus        88 ~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~  167 (639)
                      +|+||++|+. .+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++||. |.+|++|+.|+..+..
T Consensus         2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd~-V~~G~~La~i~~~~~~   79 (546)
T TIGR01348         2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGDT-LPVGGVIATLEVGAGA   79 (546)
T ss_pred             ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCCE-EeccceEEEEeccccc
Confidence            5889999987 9999999999999999999999999999999999999999999999999999 9999999999654331


Q ss_pred             cccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCeee
Q 006594          168 IQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVIC  247 (639)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~  247 (639)
                      .... ......++...+..+... .    .....+..  ......++++||++|+ |++|+|++|+|++||.|++||+||
T Consensus        80 ~~~~-~~~~~~~~~~~~~~~~~~-~----~~~~~~~~--~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~  150 (546)
T TIGR01348        80 QAQA-EAKKEAAPAPTAGAPAPA-A----QAQAAPAA--GQSSGVQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLI  150 (546)
T ss_pred             cccc-cccccccccccccccccc-c----cccccccc--cccCCceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeE
Confidence            1100 000000000000000000 0    00000110  0011237999999999 999999999999999999999999


Q ss_pred             EeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCCC-----CCcccCCCCC--CCCCCcc-
Q 006594          248 EIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVT-----SGAEVKGEKE--THHDSKD-  319 (639)
Q Consensus       248 ~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~-  319 (639)
                      +|||||++++|+||++|+|.++++++|+. |++|++|+.|..++++....+....     ..+.+..+.+  .+....+ 
T Consensus       151 ~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (546)
T TIGR01348       151 TLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAGSTPATAPAPASAQPAAQSPAATQPEPAAAPAAAKAQ  229 (546)
T ss_pred             EEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCCCCcccccCcccccccCCCCccccccccCCCCCCCcc
Confidence            99999999999999999999999999999 9999999999754433111100000     0000000000  0000000 


Q ss_pred             ccc-----cccCCCc-cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCC
Q 006594          320 VVK-----VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTST  393 (639)
Q Consensus       320 ~~~-----~~~~~~~-~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p  393 (639)
                      .+.     ....... ++||+||+||+|+||||+.|+|||++|||+++||++|+..........++   ++.... ...+
T Consensus       230 ~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~---~~~~~~-~~~~  305 (546)
T TIGR01348       230 APAPQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKGTGIKGRILREDVQRFVKEPSVRAQAAAA---SAAGGA-PGAL  305 (546)
T ss_pred             CcccccccccccccccCCCHHHHHHHHHcCCCHhhCCCCCCCCeEeHHHHHHHhhccccccCcccc---cccCCc-cccC
Confidence            000     0011123 58999999999999999999999999999999999997532110000000   000000 0000


Q ss_pred             CCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHH
Q 006594          394 AVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKA  470 (639)
Q Consensus       394 ~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likA  470 (639)
                        ..+. ........++.+|+++|||.||++|.+|++++||||++.++|+|+|+++|+++|+   +.|.|+||++||+||
T Consensus       306 --~~~~-~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~r~~l~~~~~~~g~kls~~~~l~kA  382 (546)
T TIGR01348       306 --PWPN-VDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAFRKQQNAAVEKEGVKLTVLHILMKA  382 (546)
T ss_pred             --CCcc-ccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhcCCcccHHHHHHHH
Confidence              0000 0001111245689999999999999999999999999999999999999999984   357899999999999


Q ss_pred             HHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 006594          471 VAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGG  550 (639)
Q Consensus       471 va~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~gg  550 (639)
                      +++||++||.||++|+++...|++|+++||||||++++||++|||++++++||.+|++++++|++++|+|+|+++||+||
T Consensus       383 ~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~gg  462 (546)
T TIGR01348       383 VAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGA  462 (546)
T ss_pred             HHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCC
Confidence            99999999999999986534699999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHH
Q 006594          551 TFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN  630 (639)
Q Consensus       551 tftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~  630 (639)
                      ||||||+||||+++|+||||+||++||++|++.++|++.+|     ++++|++|+|||+||||++||+++++||++|+++
T Consensus       463 TfTiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~-----~~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~  537 (546)
T TIGR01348       463 CFTISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGK-----EFEPRLMLPLSLSYDHRVIDGADAARFTTYICES  537 (546)
T ss_pred             eEEEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECC-----EEEEEEEEEEeEeccchhcChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999987654     7999999999999999999999999999999999


Q ss_pred             HhchhhhcC
Q 006594          631 FSDIRRLLL  639 (639)
Q Consensus       631 Le~P~~ll~  639 (639)
                      ||||..||+
T Consensus       538 le~P~~ll~  546 (546)
T TIGR01348       538 LADIRRLLL  546 (546)
T ss_pred             HhCHHhhhC
Confidence            999998875

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=100.00  E-value=2.2e-93  Score=814.16  Aligned_cols=517  Identities=24%  Similarity=0.337  Sum_probs=411.3

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      .+++.++||++|  +.+|+|++|+|++||.|++||+||++|+||+.++|.||++|+|.++++++|+. |..|++|+.|..
T Consensus       103 ~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~  179 (633)
T PRK11854        103 AAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEV  179 (633)
T ss_pred             CCceEEecccCC--CCCceEeEEEeCCCCEECCCCEeeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEec
Confidence            456789999999  89999999999999999999999999999999999999999999999999999 999999999976


Q ss_pred             CCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccC
Q 006594          164 DADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVG  243 (639)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~g  243 (639)
                      .+......  +      +.     +....+     ...++ +   .....+++||+||  |++|+|++|+|++||.|++|
T Consensus       180 ~~~~~~~~--~------~~-----~~~~~~-----~~~~~-~---a~~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g  235 (633)
T PRK11854        180 AGEAPAAA--P------AA-----AEAAAP-----AAAPA-A---AAGVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAE  235 (633)
T ss_pred             cccccccc--c------cc-----cccccc-----ccccc-c---cCCceEEecCCCc--ccceEEEEEEecCCCeecCC
Confidence            44321100  0      00     000000     00010 0   1234799999999  99999999999999999999


Q ss_pred             CeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCC-CCCcccCC-CCCCCCCCcc--
Q 006594          244 DVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV-TSGAEVKG-EKETHHDSKD--  319 (639)
Q Consensus       244 d~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~--  319 (639)
                      |+||+|||||++++|+||++|+|.+|++++|+. |++|++|+.|.+++++....+.+. ...+.+.. ..+.+...+.  
T Consensus       236 ~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (633)
T PRK11854        236 QSLITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VKTGSLIMRFEVEGAAPAAAPAKQEAAAPAPAAAKAEAPAAAPAAK  314 (633)
T ss_pred             CceEEEEecceeeEeeCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCCccccccccCCCCCCccccccCCCCCCCccc
Confidence            999999999999999999999999999999999 999999999975443311111100 00000000 0000000000  


Q ss_pred             ccc----cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCC-
Q 006594          320 VVK----VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTA-  394 (639)
Q Consensus       320 ~~~----~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-  394 (639)
                      .+.    .......++||+||+||+++|||++.|+||||+|||+++||++|+.........+++   ++.  ...+.+. 
T Consensus       315 ~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~---~~~--~~~~~~~~  389 (633)
T PRK11854        315 AEGKSEFAENDAYVHATPLVRRLAREFGVNLAKVKGTGRKGRILKEDVQAYVKDAVKRAEAAPA---AAA--AGGGGPGL  389 (633)
T ss_pred             ccccccccccCCccCCCchhHHHHHHhCCChhhcCCCCCCCeEeHHHHHHHhhccccccccCCc---ccc--cccccccc
Confidence            000    011123568999999999999999999999999999999999997532110000000   000  0000000 


Q ss_pred             CCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh-----hCCCCcCHHHHHHH
Q 006594          395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE-----KHNTKVSVNDIVIK  469 (639)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~-----~~g~kls~~~~lik  469 (639)
                      ...+. .........+.+|+++|||.||++|.+|++++||||++.++|+|+|+++|++++.     +.|.++||++||+|
T Consensus       390 ~~~~~-~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~lik  468 (633)
T PRK11854        390 LPWPK-VDFSKFGEIEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMK  468 (633)
T ss_pred             ccccc-ccccccCcceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHH
Confidence            00000 0001111234579999999999999999999999999999999999999998763     34789999999999


Q ss_pred             HHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 006594          470 AVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQG  549 (639)
Q Consensus       470 Ava~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~g  549 (639)
                      |+++||++||+||++|+++.++|++|+++||||||++++||++|||+++++++|.+|+++++++.+++|+|+|.++|++|
T Consensus       469 Ava~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~g  548 (633)
T PRK11854        469 AVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQG  548 (633)
T ss_pred             HHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCC
Confidence            99999999999999997543569999999999999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHH
Q 006594          550 GTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCS  629 (639)
Q Consensus       550 gtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~  629 (639)
                      |||||||+||+|+++|+||||+||+|||++|++.++|+++++     .+++|++|+|||+||||++||+|+|+||++|++
T Consensus       549 gTftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~-----~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~  623 (633)
T PRK11854        549 GCFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGK-----EFAPRLMLPLSLSYDHRVIDGADGARFITIIND  623 (633)
T ss_pred             cEEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECC-----EEEEEEEEEEeEEccchhcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999877554     789999999999999999999999999999999


Q ss_pred             HHhchhhhcC
Q 006594          630 NFSDIRRLLL  639 (639)
Q Consensus       630 ~Le~P~~ll~  639 (639)
                      +||+|..|||
T Consensus       624 ~LE~p~~ll~  633 (633)
T PRK11854        624 RLSDIRRLVL  633 (633)
T ss_pred             HHhCHHhhhC
Confidence            9999998886

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=4.6e-93  Score=801.37  Aligned_cols=534  Identities=27%  Similarity=0.374  Sum_probs=410.4

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .+.++||++|+ +.+|+|++|+|++||.|++||+||+||+||+.++|.|+.+|+|.++++++|+. |.+|++|+.|++.+
T Consensus         2 ~~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd~-V~~G~~L~~i~~~~   79 (547)
T PRK11855          2 AIEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGDT-VSVGGLLAVIEAAG   79 (547)
T ss_pred             CceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCCE-ecCCceeeEecccc
Confidence            35799999999 99999999999999999999999999999999999999999999999999999 99999999997544


Q ss_pred             cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCe
Q 006594          166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV  245 (639)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~  245 (639)
                      .....   +.+......  .+.+. ..+...+.......+ .......+++||+||+ |++|+|++|+|++||.|++||.
T Consensus        80 ~~~~~---~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~  151 (547)
T PRK11855         80 AAAAA---AAPAAAAAP--AAAAA-AAPAPAAAAPAAAAA-AAGGGVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQS  151 (547)
T ss_pred             ccccc---ccccccccc--ccccc-ccccccccccccccC-cccCCceEEecCCCCC-cceeEEeEEEeCCCCeecCCCe
Confidence            31110   000000000  00000 000000000000000 0001237899999999 9999999999999999999999


Q ss_pred             eeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCCCCCc--ccCC-CCCCCCCC--ccc
Q 006594          246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGA--EVKG-EKETHHDS--KDV  320 (639)
Q Consensus       246 l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~--~~~  320 (639)
                      |++|||||+.++|+||++|+|.++++++|+. |++|++|+.|.+.+++...........+  .... +.+.+...  +..
T Consensus       152 l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (547)
T PRK11855        152 LITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAA  230 (547)
T ss_pred             eEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecCCCccccccCCCCCCCccccccCCCCCCcccccCCc
Confidence            9999999999999999999999999999999 9999999999765432111000000000  0000 00000000  000


Q ss_pred             c--c-cccCCCc-cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCC
Q 006594          321 V--K-VQKGSFT-KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVS  396 (639)
Q Consensus       321 ~--~-~~~~~~~-~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  396 (639)
                      .  . ....+.. ++||+||+||+++|||++.|+|||++|||+++||++|+....... ..++....+.+..  ..++..
T Consensus       231 ~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~  307 (547)
T PRK11855        231 AAPAAAAAPGKAPHASPAVRRLARELGVDLSQVKGTGKKGRITKEDVQAFVKGAMSAA-AAAAAAAAAAGGG--GLGLLP  307 (547)
T ss_pred             cccccccccCCcccCChHHHHHHHHhCCCHHHCcCCCCCCcEeHHHHHHHhhcccccc-ccccccccccccc--cccccC
Confidence            0  0 0001223 689999999999999999999999999999999999975321110 0000000000000  000000


Q ss_pred             CCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHHHHH
Q 006594          397 PGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAV  473 (639)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likAva~  473 (639)
                      .+.. ........+.+|+++|||.||++|++|++++||||++.+||+|+|+++|++++.   +.|.++||++||+||+++
T Consensus       308 ~~~~-~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~g~k~s~~~~likAv~~  386 (547)
T PRK11855        308 WPKV-DFSKFGEIETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEALRKQLKKEAEKAGVKLTMLPFFIKAVVA  386 (547)
T ss_pred             Cccc-cccccCcceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHHHHHhhhhhhhcCCCCCHHHHHHHHHHH
Confidence            0000 000111245679999999999999999999999999999999999999999874   347899999999999999


Q ss_pred             HHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEE
Q 006594          474 ALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFS  553 (639)
Q Consensus       474 Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtft  553 (639)
                      ||++||+||++|+++.+.+++|++||||+||++++||++|+|++++.+++.+|+++++++++++|+|+|.++|++||||+
T Consensus       387 al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtft  466 (547)
T PRK11855        387 ALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFT  466 (547)
T ss_pred             HHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEE
Confidence            99999999999985334599999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594          554 ISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD  633 (639)
Q Consensus       554 ISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~  633 (639)
                      |||+||+|+++|+|+||+||+|||++|++.++|++.+|     .+..|.+|+|||+||||+|||+|+++||+.|+++||+
T Consensus       467 iSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~-----~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~  541 (547)
T PRK11855        467 ISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGK-----EFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLAD  541 (547)
T ss_pred             EeCCccccccceecCcCCCceEEEEcccceEeeeeeCC-----EEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999855433     6899999999999999999999999999999999999


Q ss_pred             hhhhcC
Q 006594          634 IRRLLL  639 (639)
Q Consensus       634 P~~ll~  639 (639)
                      |+.||+
T Consensus       542 p~~ll~  547 (547)
T PRK11855        542 PRRMLL  547 (547)
T ss_pred             HHhhhC
Confidence            999875

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=100.00  E-value=1.8e-84  Score=703.22  Aligned_cols=399  Identities=36%  Similarity=0.524  Sum_probs=334.4

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      .+++||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|.++++
T Consensus         3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~   81 (407)
T PRK05704          3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEGAA   81 (407)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence            4789999999999999999999999999999999999999999999999999999999999999 999999999976544


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (639)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~  372 (639)
                      +.+..+++...++  ..  +.+...++.+. .......+||+||+||+|+|||++.|+|||++|||+++||++|+.....
T Consensus        82 ~~~~~~~~~~~~~--~~--~~~~~~~~~~~-~~~~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~  156 (407)
T PRK05704         82 AGAAAAAAAAAAA--AA--AAPAQAQAAAA-AEQSNDALSPAARKLAAENGLDASAVKGTGKGGRVTKEDVLAALAAAAA  156 (407)
T ss_pred             ccccCCCCCCCCC--CC--CCCCCCCCCcc-CCCccccCCchhhhHHhhcCCChhhCCCCCCCCcccHHHHHHHhhcccc
Confidence            3221111000000  00  00000001110 1112346899999999999999999999999999999999999743210


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (639)
Q Consensus       373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~  452 (639)
                      ..  .++    +. . . ..+   .+.. .  .....+.+|+++|||.|+++|.+|++++||||++.++|+|+|+++|++
T Consensus       157 ~~--~~~----~~-~-~-~~~---~~~~-~--~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~r~~  221 (407)
T PRK05704        157 AP--AAP----AA-A-A-PAA---APAP-L--GARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQ  221 (407)
T ss_pred             cC--CCC----CC-C-C-CcC---CCcc-c--cCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHHHHH
Confidence            00  000    00 0 0 000   0000 0  011134579999999999999999999999999999999999999999


Q ss_pred             Hhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594          453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM  528 (639)
Q Consensus       453 ~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~  528 (639)
                      +++    +.|.++||++||+||+++||++||.||++|++++  +++|+++|||+||++++||++|||++++++|+.+|++
T Consensus       222 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~  299 (407)
T PRK05704        222 YKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDD--IVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEK  299 (407)
T ss_pred             HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCe--EEEcCCCCeEEEEECCCceEeCcCCCcccCCHHHHHH
Confidence            974    2478999999999999999999999999998765  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594          529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL  608 (639)
Q Consensus       529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl  608 (639)
                      ++++|.+++|+|+|+++|++||||||||+|+||+.+|+||||+||+|||++|++.++|++++|     ++++|++|+|||
T Consensus       300 ~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g-----~i~~r~~~~lsl  374 (407)
T PRK05704        300 KIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPVAVNG-----QIVIRPMMYLAL  374 (407)
T ss_pred             HHHHHHHHHHcCCCChHHcCCceEEEecCCcccccceeccccCCcEEEEEcccceEEeEEECC-----EEEEEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999988765     799999999999


Q ss_pred             EecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +||||+|||+++|+||++|+++||||+.||+
T Consensus       375 s~DHRviDGa~aa~Fl~~l~~~le~p~~ll~  405 (407)
T PRK05704        375 SYDHRIIDGKEAVGFLVTIKELLEDPERLLL  405 (407)
T ss_pred             EechhhhCcHHHHHHHHHHHHHhhCHHHHhh
Confidence            9999999999999999999999999998875

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=100.00  E-value=2.9e-84  Score=700.16  Aligned_cols=397  Identities=34%  Similarity=0.505  Sum_probs=333.4

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      ++++||+||++|++|+|++|+|++||.|++||+||+|||||+++||+|+.+|+|.++++++|+. |++|++|++|.++++
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~~   79 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGND   79 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 999999999975433


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (639)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~  372 (639)
                      ..+..++  +..++...+.+.+  .++.+. .......+||+||+||+|+|||++.|+|||++|||+++||++|+.....
T Consensus        80 ~~~~~~~--~~~~~~~~~~~~~--~~~~~~-~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~  154 (403)
T TIGR01347        80 ATAAPPA--KSGEEKEETPAAS--AAAAPT-AAANRPSLSPAARRLAKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPAS  154 (403)
T ss_pred             Ccccccc--cccCCCCCCCCCC--CCCCCc-CccccccCCchhhhHHHHcCCChhhCCCCCCCCcccHHHHHHhhhcccc
Confidence            2110000  0000000000000  011111 1122346899999999999999999999999999999999999743110


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (639)
Q Consensus       373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~  452 (639)
                      ..  .+      ...  .+.+   .+..   .. ...+.+|+++|||.||++|++||+++||||++.++|+|+|+++|++
T Consensus       155 ~~--~~------~~~--~~~~---~~~~---~~-~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~  217 (403)
T TIGR01347       155 AQ--AP------APA--AAAK---APAN---FT-RPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMELRKR  217 (403)
T ss_pred             cC--CC------CCC--cccC---Cccc---cC-CCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHHHHH
Confidence            00  00      000  0000   0000   00 1134579999999999999999999999999999999999999999


Q ss_pred             Hhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594          453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM  528 (639)
Q Consensus       453 ~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~  528 (639)
                      ++.    +.|.++||++||+||+++||++||.||++|++++  |++|+++|||+||++++||++|||++++++|+.+|++
T Consensus       218 ~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~  295 (403)
T TIGR01347       218 YKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDD--IVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIEK  295 (403)
T ss_pred             HHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCE--EEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHHH
Confidence            874    3478999999999999999999999999998764  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594          529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL  608 (639)
Q Consensus       529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl  608 (639)
                      ++++|.+++|+|+|+++|++||||||||+|+||..+|+||||+||+|||++|++.++|++++|     ++++|++|+|||
T Consensus       296 ~~~~l~~~ar~gkL~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g-----~i~~r~~m~lsL  370 (403)
T TIGR01347       296 EIADLGKKARDGKLTLEDMTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHGIKERPVAVNG-----QIEIRPMMYLAL  370 (403)
T ss_pred             HHHHHHHHHHcCCCChhhcCCceEEEecCCcCcccceeccccCCceEEEecccceEEEEEECC-----eEEEEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999988765     799999999999


Q ss_pred             EecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +||||++||+++|+||++|+++||+|..||+
T Consensus       371 t~DHRviDGa~aa~Fl~~l~~~le~p~~ll~  401 (403)
T TIGR01347       371 SYDHRLIDGKEAVTFLVTIKELLEDPRRLLL  401 (403)
T ss_pred             EecchhhChHHHHHHHHHHHHHhcCHHHHHh
Confidence            9999999999999999999999999998875

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=100.00  E-value=5.5e-84  Score=712.28  Aligned_cols=407  Identities=44%  Similarity=0.728  Sum_probs=337.4

Q ss_pred             CCCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEE
Q 006594          207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIA  285 (639)
Q Consensus       207 ~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~  285 (639)
                      +..|++.+++||+||++|++|+|++|+|++||.|++||+||+|||||+++|++++++|+|.+|++++|+ . |++|++|+
T Consensus       107 ~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~-v~vG~~ia  185 (539)
T PLN02744        107 SDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE-IKVGEVIA  185 (539)
T ss_pred             ccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc-cCCCCEEE
Confidence            456789999999999999999999999999999999999999999999999999999999999999996 6 99999999


Q ss_pred             EEecCCCCcCCcC--------CCCCCCc--ccCCCC-C---CCCCCcc--ccc--c--ccCCCccCChhHHhhHHHcCCC
Q 006594          286 ITVEDPGDVGTVK--------NSVTSGA--EVKGEK-E---THHDSKD--VVK--V--QKGSFTKISPSAKLLILEHGLD  345 (639)
Q Consensus       286 ~i~~~~~~~~~~~--------~~~~~~~--~~~~~~-~---~~~~~~~--~~~--~--~~~~~~~asP~ar~lA~e~gID  345 (639)
                      +|.+++++.+.+.        ....+++  .+..+. +   .+...+.  .+.  .  ......++||+||+||+|+|||
T Consensus       186 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVD  265 (539)
T PLN02744        186 ITVEEEEDIGKFKDYKPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDRIFASPLARKLAEDNNVP  265 (539)
T ss_pred             EEccCccccccccccccccccccccccccCCCCCcccccccCCCCCcccccccccccccccccccCCchhHHHHHHcCCC
Confidence            9965444321110        0000000  000000 0   0000000  000  0  0112346899999999999999


Q ss_pred             cccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHh
Q 006594          346 ASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRL  425 (639)
Q Consensus       346 ls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m  425 (639)
                      ++.|+||||+|||+++||++|+.......  .       .+ .+  .+     .  ..+. ...+++|+++|||.||++|
T Consensus       266 Ls~V~GTGp~GRI~k~DV~a~~~~~~~~~--~-------~~-~~--~~-----~--~~~~-~~~~~vpls~~Rk~IA~~m  325 (539)
T PLN02744        266 LSSIKGTGPDGRIVKADIEDYLASGGKGA--T-------AP-PS--TD-----S--KAPA-LDYTDIPNTQIRKVTASRL  325 (539)
T ss_pred             HHHCCCCCCCCcccHHHHHHHhhcccccc--C-------CC-CC--cc-----c--CCCC-CccccccchhHHHHHHHHH
Confidence            99999999999999999999975321000  0       00 00  00     0  0000 1235689999999999999


Q ss_pred             hhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEE
Q 006594          426 LESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS  501 (639)
Q Consensus       426 ~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~  501 (639)
                      ++|++++||||++.++|+|+|+++|+++|.    +.|.|+||++||+||+++||++||+||++|+++.  |++|++||||
T Consensus       326 ~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~~~~~--i~~~~~vnIg  403 (539)
T PLN02744        326 LQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSWTDDY--IRQYHNVNIN  403 (539)
T ss_pred             HHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheeeccCc--EEEeCCcceE
Confidence            999999999999999999999999999974    2378999999999999999999999999998765  9999999999


Q ss_pred             EEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCC-CCCccceeeccCCCcceEEEec
Q 006594          502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG-MFPVDQFCAIINPPQAGILAVG  580 (639)
Q Consensus       502 iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG-~~g~~~~~pii~~p~~ail~vG  580 (639)
                      +||++++||++|||++++++++.+|++++++|.+++|+|+|+++||+||||||||+| +||+.+|+||||+||+|||++|
T Consensus       404 vAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G~~~ftpIInpPqvaILgvG  483 (539)
T PLN02744        404 VAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFGIKQFCAIINPPQSAILAVG  483 (539)
T ss_pred             EEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccccceeeccccCCcEEEEEcc
Confidence            999999999999999999999999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             CceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          581 RGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       581 ~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      ++.++|++.. .+|  ++++|++|+|||+||||||||+++|+||++|+++||||+.||+
T Consensus       484 ~i~~~pvv~~-~~g--~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll  539 (539)
T PLN02744        484 SAEKRVIPGS-GPD--QYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL  539 (539)
T ss_pred             cceeEeEEec-cCC--eEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence            9999987742 233  7999999999999999999999999999999999999999886

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=100.00  E-value=1.1e-83  Score=676.25  Aligned_cols=416  Identities=49%  Similarity=0.735  Sum_probs=352.7

Q ss_pred             CCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       209 ~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .+.|.+|.||.|+++|++|+|++|+++|||.+.+||+||||||||++|++|++++|++++|+++||..||+||.+||+|+
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            78999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             cCCCCcCCcCCCCC------CCcccCC-CCCCC---CCCc---cc-----ccc-ccCCCccCChhHHhhHHHcCCCcccc
Q 006594          289 EDPGDVGTVKNSVT------SGAEVKG-EKETH---HDSK---DV-----VKV-QKGSFTKISPSAKLLILEHGLDASSL  349 (639)
Q Consensus       289 ~~~~~~~~~~~~~~------~~~~~~~-~~~~~---~~~~---~~-----~~~-~~~~~~~asP~ar~lA~e~gIDls~v  349 (639)
                      +++++++++.....      ..+.+++ +++++   .+.+   +.     +.. ..+...++||.||+||.++|||++.|
T Consensus       115 e~e~di~~~k~~k~~~s~~~~~~~~~~~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~asP~Ak~la~e~~l~ls~i  194 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDEASSGEQSPSAAPPPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFASPLAKKLAEEKGLELSSI  194 (470)
T ss_pred             cccccHHHhhccccccccccCCcccCCCCCCCcccccCCCCCCccccccccCCcCCCCceecChHHHHHHHHhCCccccC
Confidence            99998876632111      0111111 01100   0011   00     101 11235679999999999999999999


Q ss_pred             cccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhcc
Q 006594          350 QASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESK  429 (639)
Q Consensus       350 ~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~  429 (639)
                      .||||+|||++.||++|++.+.......+      .+..+..++     +++. .....|+++|+++||+.|+++|.+|+
T Consensus       195 ~gtGP~Gri~k~Di~~~v~~~~~k~~~~~------~~~~~~~~~-----~a~~-~~~~~~~diP~s~mr~viakrl~eSk  262 (470)
T KOG0557|consen  195 PGTGPHGRILKGDIEKHVGSGKKKSAKAP------KASAPPPAP-----AAPP-VSLPGYEDIPVSNMRRVIAKRLLESK  262 (470)
T ss_pred             cCcCCCceeehhhHHHhhcccccccccCC------CccCCCcCc-----cCCc-CCCCcccccccchhhhhhhhhhhhhh
Confidence            99999999999999999876431111110      000011111     1111 12224899999999999999999999


Q ss_pred             CCcceEEeeeeeechHHHHHHHHHh-hhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC
Q 006594          430 QNTPHLYLSSDVVLDPLLSFRKELK-EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK  508 (639)
Q Consensus       430 ~~iP~~~~~~evDvt~l~~~rk~~~-~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~  508 (639)
                      +.+||||++.++++++|+++|+++| ++.+.++|+++|++||++.||.++|+.|++|+++ ..|+++++|||++||++++
T Consensus       263 ~~IPh~yvt~~~~~d~ll~~r~~ln~~~~~~~vsvndliiKAaa~al~~vPevNs~w~~~-~~i~~~~~VdisvAVat~~  341 (470)
T KOG0557|consen  263 QTIPHYYVTVDVNLDKLLALREKLNFEKSIKKVSLNDLIAKAAALALAKVPEVNSSWMDE-LVIRQLSSVDISVAVATPN  341 (470)
T ss_pred             cCCCeEEEeeeeehHHHHHHHHHhhhcccCcccchhHHHHHHHHHHHhcCCcccceecCC-ccccccCcCChhheeeccC
Confidence            9999999999999999999999998 5677899999999999999999999999999985 4599999999999999999


Q ss_pred             CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEE
Q 006594          509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP  588 (639)
Q Consensus       509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~  588 (639)
                      ||++|+|+|++.+.+.+|.+++.+|.+++|.|+|.+++|+||||+||||||||++.|+.||||||.+||++|...+..++
T Consensus       342 GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNLGmf~V~~F~AiinPpq~~ILavg~~~~~~v~  421 (470)
T KOG0557|consen  342 GLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNLGMFGVDMFTAIINPPQADILAVGAATPSVVP  421 (470)
T ss_pred             cccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhccCcCccccccccCCchhhhhhcccCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             eeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       589 ~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      .  .|+.+++.....|+|+|++|||++||+.+++||+.|+++||||..|||
T Consensus       422 d--~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll  470 (470)
T KOG0557|consen  422 D--ANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL  470 (470)
T ss_pred             C--CCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence            3  344457899999999999999999999999999999999999999986

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=100.00  E-value=7.1e-82  Score=689.04  Aligned_cols=410  Identities=48%  Similarity=0.700  Sum_probs=333.7

Q ss_pred             eeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCC
Q 006594          214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGD  293 (639)
Q Consensus       214 ~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~  293 (639)
                      +++||++|.+|++|+|.+|+|++||.|+.||+||+|||||++++|+|+++|+|.++++++|+..|++|++|++|.+++++
T Consensus         1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~~~   80 (435)
T TIGR01349         1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEKED   80 (435)
T ss_pred             CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccCCc
Confidence            47899999999999999999999999999999999999999999999999999999999998559999999999754433


Q ss_pred             cC-CcC------C--CCCCCccc-C-C---CCC--CCCCCcccc---cc----ccCCCccCChhHHhhHHHcCCCccccc
Q 006594          294 VG-TVK------N--SVTSGAEV-K-G---EKE--THHDSKDVV---KV----QKGSFTKISPSAKLLILEHGLDASSLQ  350 (639)
Q Consensus       294 ~~-~~~------~--~~~~~~~~-~-~---~~~--~~~~~~~~~---~~----~~~~~~~asP~ar~lA~e~gIDls~v~  350 (639)
                      .+ +.+      .  ...+.+.+ . .   +.+  .+....+.+   ..    .....+++||+||+||+|+|||++.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl~~v~  160 (435)
T TIGR01349        81 VADAFKNYKLESSASAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDLSAVA  160 (435)
T ss_pred             cccccccccccccccCCCCcccccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCHhHCC
Confidence            22 100      0  00000000 0 0   000  000000000   00    011235689999999999999999999


Q ss_pred             ccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccC
Q 006594          351 ASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQ  430 (639)
Q Consensus       351 gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~  430 (639)
                      |||++|||+++||++|+.... ...+.+   . +.+     .+...  ...........+.+|+++|||.|+++|++|++
T Consensus       161 gtG~~GrI~~~DV~~~~~~~~-~~~~~~---~-~~~-----~~~~~--~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~  228 (435)
T TIGR01349       161 GSGPNGRIVKKDIESFVPQSP-ASANFQ---A-AAT-----TPATK--KAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQ  228 (435)
T ss_pred             CCCCCCceeHHHHHHHHhccc-ccCCCc---c-ccc-----ccccc--ccCCCccCCcceeecccHHHHHHHHHHHHHHh
Confidence            999999999999999985311 000000   0 000     00000  00000011124567999999999999999999


Q ss_pred             CcceEEeeeeeechHHHHHHHHHhhhC--CCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC
Q 006594          431 NTPHLYLSSDVVLDPLLSFRKELKEKH--NTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK  508 (639)
Q Consensus       431 ~iP~~~~~~evDvt~l~~~rk~~~~~~--g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~  508 (639)
                      ++||||++.++|+|+|+++|+++++..  |.++||++||+||+++||++||.||++|+++.  |++|++|||||||++++
T Consensus       229 ~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~--i~~~~~vnigvAv~~~~  306 (435)
T TIGR01349       229 TIPHYYVSIECNVDKLLALRKELNAMASEVYKLSVNDFIIKASALALREVPEANSSWTDNF--IRRYKNVDISVAVATPD  306 (435)
T ss_pred             hCCeEEEEEEEEhHHHHHHHHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHhheEEeCCe--EEEeCCeeEEEEEECCC
Confidence            999999999999999999999998532  78999999999999999999999999998754  99999999999999999


Q ss_pred             CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEE
Q 006594          509 GLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP  588 (639)
Q Consensus       509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~  588 (639)
                      ||++|||++++++|+.+|+++++++.+++|+|+|.++||+||||||||+|++|..+|+||||+||++||++|++.+++++
T Consensus       307 GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~G~~~~tpiin~pq~aIlgvG~i~~~pv~  386 (435)
T TIGR01349       307 GLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMFGIKDFTAIINPPQACILAVGAVEDVAVV  386 (435)
T ss_pred             CeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCccCccceECccCCCceEEEEcccceEEeEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             eeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       589 ~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      ++|.++  .+++|++|+|||+||||++||+++++||++|+++||+|+.||+
T Consensus       387 ~~~~~~--~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll  435 (435)
T TIGR01349       387 DNDEEK--GFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL  435 (435)
T ss_pred             eCCccc--eeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence            765222  4999999999999999999999999999999999999998875

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=100.00  E-value=1.8e-81  Score=682.25  Aligned_cols=410  Identities=24%  Similarity=0.353  Sum_probs=331.6

Q ss_pred             eecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCc
Q 006594          215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDV  294 (639)
Q Consensus       215 ~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~  294 (639)
                      ++||+||++|++|+|++|+|++||.|++||+||++||||+.++++++.+|+|.++++++|+. +++|++|+.|..++++.
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~~~   79 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDSQH   79 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCCcc
Confidence            46899999999999999999999999999999999999999999999999999999999999 99999999996544332


Q ss_pred             CCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCcc
Q 006594          295 GTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSS  374 (639)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~  374 (639)
                      +.....  ..+..  +.+.+....+.+........++||+||+||+++|||++.|+|||++|||+++||++|+.......
T Consensus        80 ~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~  155 (416)
T PLN02528         80 LRSDSL--LLPTD--SSNIVSLAESDERGSNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRVLKEDVLKYAAQKGVVK  155 (416)
T ss_pred             ccccCC--CCCCC--CccCCCCCCCCccccccCCccCChHHHHHHHHhCCCHHHCCCCCCCCcEeHHHHHHHhhcccccc
Confidence            110000  00000  00000000000001111234689999999999999999999999999999999999975321100


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh
Q 006594          375 RISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK  454 (639)
Q Consensus       375 ~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~  454 (639)
                      .+..+ ..+..   +...+....+..+. ......+.+|+++|||.||++|.+|+ ++||||++.+||+|+|+++|++++
T Consensus       156 ~~~~~-~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~r~~~~  229 (416)
T PLN02528        156 DSSSA-EEATI---AEQEEFSTSVSTPT-EQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVELKASFQ  229 (416)
T ss_pred             ccccc-ccccC---CccccccccCCCcc-cccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHHHHHHh
Confidence            00000 00000   00000000000000 00101345799999999999999996 999999999999999999999987


Q ss_pred             h---hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHH
Q 006594          455 E---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVK  531 (639)
Q Consensus       455 ~---~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~  531 (639)
                      +   ..|.++||++||+||+++||++||.||++|+++..+|++|+++||||||++++||++|||++++.+++.+|+++++
T Consensus       230 ~~~~~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~  309 (416)
T PLN02528        230 ENNTDPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELS  309 (416)
T ss_pred             hhhhhcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHH
Confidence            4   3578999999999999999999999999998764469999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEec
Q 006594          532 ELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSAD  611 (639)
Q Consensus       532 ~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~D  611 (639)
                      +|++++|+|+|+++|++||||||||+|++|..+|+||||+||+|||++|++.++|++++  +|  ++.+|++|+|||+||
T Consensus       310 ~l~~~ar~gkL~~~dl~ggTftiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~--~g--~i~~r~~m~lslt~D  385 (416)
T PLN02528        310 RLQHLAAENKLNPEDITGGTITLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVD--DG--NVYPASIMTVTIGAD  385 (416)
T ss_pred             HHHHHHHcCCCCHHHhCCceEEEeCCccccCCceECcccCCceEEEEcccceEEeEEeC--CC--cEEEEeEEEEeEecc
Confidence            99999999999999999999999999999999999999999999999999999998763  23  799999999999999


Q ss_pred             ccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          612 HRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       612 HRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      ||||||+++++||++|+++||||+.||+
T Consensus       386 HRviDGa~aa~Fl~~lk~~le~P~~lll  413 (416)
T PLN02528        386 HRVLDGATVARFCNEWKSYVEKPELLML  413 (416)
T ss_pred             chhcCcHHHHHHHHHHHHHHhCHHHHHh
Confidence            9999999999999999999999999875

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=6.5e-79  Score=659.34  Aligned_cols=398  Identities=41%  Similarity=0.595  Sum_probs=339.2

Q ss_pred             ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++|++ |++|++|++|.+++
T Consensus         2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~~   80 (404)
T COG0508           2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEEG   80 (404)
T ss_pred             CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999 99999999998876


Q ss_pred             CCcCCcCCCCCCCcccCCCCCCCCCCcccc-ccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594          292 GDVGTVKNSVTSGAEVKGEKETHHDSKDVV-KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG  370 (639)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~  370 (639)
                      ++.++..+.. .     ++.+.+....+.+ .........+||++|++|+|+|||++.+.|||++|||++.|+..+....
T Consensus        81 ~~~~a~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~e~gidl~~v~gtG~~gri~~~d~~~~~~~~  154 (404)
T COG0508          81 ADAPAAAEAP-P-----EPAAAAPASAPATAASAAAGRVLASPAVRRLAREAGIDLSKVKGTGPGGRITKKDVEAAVAEK  154 (404)
T ss_pred             CcccccCccc-C-----CccccCcCcccCccccccccccccCcchhhhhhhcCCCHHHcCCcCCCCceeccchhhhcccc
Confidence            6531111100 0     0000000000000 0001145679999999999999999999999999999999999987643


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHH
Q 006594          371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR  450 (639)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r  450 (639)
                      .. .  +      +.+ .+ ..+   .+.    .....++++|++++||.|+++|.+|+.++||+|.+.++|++.|+++|
T Consensus       155 ~~-~--~------~~~-~~-~~~---~~~----~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~lr  216 (404)
T COG0508         155 AA-A--A------AAP-AP-AAA---APA----SAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMALR  216 (404)
T ss_pred             cc-c--c------ccc-cc-ccC---Ccc----cccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHHH
Confidence            00 0  0      000 00 000   000    12235778899999999999999999999999999999999999999


Q ss_pred             HHHhhh---CCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHH
Q 006594          451 KELKEK---HNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAIS  527 (639)
Q Consensus       451 k~~~~~---~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~  527 (639)
                      ++++..   .|.|+||++|++||++.||+++|.+|++++++...+++++++|||+||++++||++|||++++++++.+|+
T Consensus       217 ~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~  296 (404)
T COG0508         217 KKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIA  296 (404)
T ss_pred             HHhhhhhcccCccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHHHH
Confidence            999842   28999999999999999999999999888864115999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEE
Q 006594          528 MEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT  607 (639)
Q Consensus       528 ~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~ls  607 (639)
                      +++.+|..++|+|+|+++||+||||||||+|++|...|+||||+||++||++|++.++|++.++     ++++|++|+|+
T Consensus       297 ~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~~~~tpiin~Pq~aILgv~~~~~rpv~~~~-----~i~~~~mm~ls  371 (404)
T COG0508         297 KEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGSLMFTPIINPPQVAILGVGAIEERPVVVGG-----EIVVRPMMYLS  371 (404)
T ss_pred             HHHHHHHHHHHhcCcCHHHhCCceEEeecCCccccceecccccChhHheeeccccccCceEecC-----ceeeEeeEeec
Confidence            9999999999999999999999999999999999999999999999999999999999988766     89999999999


Q ss_pred             EEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          608 LSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       608 lt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+||||++||+++++||..++++||+|..||+
T Consensus       372 ls~DHRviDGa~aa~Fl~~ik~~le~p~~ll~  403 (404)
T COG0508         372 LSYDHRVIDGAEAARFLVALKELLEDPERLLL  403 (404)
T ss_pred             ccccccccccHHHHHHHHHHHHHhcChhhhhc
Confidence            99999999999999999999999999998875

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=100.00  E-value=3e-76  Score=645.36  Aligned_cols=401  Identities=39%  Similarity=0.589  Sum_probs=333.1

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      .++.||++|++|.+|+|.+|+|++||.|+.||+|++|||||+.++++||++|+|.++++++|+. |++|++|+.|.+.++
T Consensus         3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~~   81 (411)
T PRK11856          3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEGE   81 (411)
T ss_pred             eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 999999999976554


Q ss_pred             -CcCCcCCCCCCCcccCCCC-CCC--CCCcccc---ccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHH
Q 006594          293 -DVGTVKNSVTSGAEVKGEK-ETH--HDSKDVV---KVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA  365 (639)
Q Consensus       293 -~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~---~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~  365 (639)
                       +.+..+++....+.+.+.. ..+  ...++..   ........++||+||+||+++|||++.|+|||++|||+++||++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~gsG~~Gri~~~Dv~~  161 (411)
T PRK11856         82 AEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKGSGPGGRITKEDVEA  161 (411)
T ss_pred             CccccccCCCCCCCCCCCCCCCCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcCCCCCCeEEHHHHHH
Confidence             3211111000000000000 000  0000000   00011123689999999999999999999999999999999999


Q ss_pred             HHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechH
Q 006594          366 AIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDP  445 (639)
Q Consensus       366 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~  445 (639)
                      |+.......  .+   .+    .+   + ...+.    ......+.+|++++||.||++|.+|++++||||++.+||+|+
T Consensus       162 ~~~~~~~~~--~~---~~----~~---~-~~~~~----~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~  224 (411)
T PRK11856        162 AAAAAAPAA--AA---AA----AA---A-AAPPA----AAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTA  224 (411)
T ss_pred             HHhcccccC--CC---CC----CC---C-CCCCc----ccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHH
Confidence            985321100  00   00    00   0 00000    001124568999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHH
Q 006594          446 LLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA  525 (639)
Q Consensus       446 l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~e  525 (639)
                      |++++|++++. +.++||++||+||+++||++||+||++|++++  +++|++||||+||++++||++|+|+++++++|.+
T Consensus       225 l~~~~k~~~~~-~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~--i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~e  301 (411)
T PRK11856        225 LLALRKQLKAI-GVKLTVTDFLIKAVALALKKFPELNASWDDDA--IVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFE  301 (411)
T ss_pred             HHHHHHHHHhh-ccCccHHHHHHHHHHHHHHhCcHhheEEeCCE--EEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHH
Confidence            99999999643 47999999999999999999999999998865  9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEE
Q 006594          526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMN  605 (639)
Q Consensus       526 i~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~  605 (639)
                      |+++++++++++|+|+|.++|+++|||+|||+||+|..+|+|+||+||++||++|++.+++++.+|     ++++|.+||
T Consensus       302 i~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~Pii~~p~~ail~iG~~~~~~~~~~g-----~~~~~~~m~  376 (411)
T PRK11856        302 LAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFTPIINPPEVAILGVGAIVERPVVVDG-----EIVVRKVMP  376 (411)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceECccCCCceEEEEcccceEEEEEECC-----EEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999999887655     799999999


Q ss_pred             EEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          606 LTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       606 lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |||+||||++||+|+++||+.|+++||+|+.||+
T Consensus       377 lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~  410 (411)
T PRK11856        377 LSLSFDHRVIDGADAARFLKALKELLENPALLLL  410 (411)
T ss_pred             EeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHhc
Confidence            9999999999999999999999999999999875

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=100.00  E-value=4.6e-75  Score=629.30  Aligned_cols=366  Identities=28%  Similarity=0.418  Sum_probs=299.7

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      .+++||+||++|++|+|++|+|++||.|++||+||+|||||+++||+||++|+|.+|++++||. |++|++|++|.++++
T Consensus        92 ~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~vG~~L~~I~~~~~  170 (463)
T PLN02226         92 VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEPGTKVAIISKSED  170 (463)
T ss_pred             eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecCCCEEEEeccCCc
Confidence            6899999999999999999999999999999999999999999999999999999999999999 999999999964432


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCC
Q 006594          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKV  372 (639)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~  372 (639)
                      +.+. ..  ..   ..++..  .  .+.+..         +..|++  +++++++.+.-.              .+....
T Consensus       171 ~~~~-~~--~~---~~~~~~--~--~~~~~~---------~~~~~~--~~~v~asp~~r~--------------~~~~~~  215 (463)
T PLN02226        171 AASQ-VT--PS---QKIPET--T--DPKPSP---------PAEDKQ--KPKVESAPVAEK--------------PKAPSS  215 (463)
T ss_pred             cccc-cC--cc---CCCCCC--C--CCCCCC---------cccccc--ccCCCcchhhcc--------------ccCCCC
Confidence            2110 00  00   000000  0  000000         001111  445555555400              000000


Q ss_pred             ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHH
Q 006594          373 SSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE  452 (639)
Q Consensus       373 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~  452 (639)
                      +.+        +     . .+ ...+.   .......+.+|+++|||.||++|.+|++++||||++.++|+|+|+++|++
T Consensus       216 ~~~--------~-----~-~~-~~~~~---~~~~~~~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~  277 (463)
T PLN02226        216 PPP--------P-----K-QS-AKEPQ---LPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQ  277 (463)
T ss_pred             CCC--------C-----c-cc-ccCcc---cccCCCceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHH
Confidence            000        0     0 00 00000   00000134579999999999999999999999999999999999999999


Q ss_pred             Hhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHH
Q 006594          453 LKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM  528 (639)
Q Consensus       453 ~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~  528 (639)
                      ++.    +.|.++||++||+||+++||++||.||+.|+++.  |++|++|||||||++++||++|||++++++++.+|++
T Consensus       278 l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~--i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~  355 (463)
T PLN02226        278 YKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDD--IIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEK  355 (463)
T ss_pred             HHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCE--EEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHH
Confidence            874    3488999999999999999999999999998764  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEE
Q 006594          529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTL  608 (639)
Q Consensus       529 ~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lsl  608 (639)
                      ++++|++++|+|+|+++|++||||||||+|+||+++|+||||+||++||++|++.++|++++|     ++++|++|+|||
T Consensus       356 ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g-----~i~~r~~m~lsL  430 (463)
T PLN02226        356 TINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGG-----SVVPRPMMYVAL  430 (463)
T ss_pred             HHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceeccccCCcEEEEEcccceEEEEEECC-----EEEEEeEEEEeE
Confidence            999999999999999999999999999999999999999999999999999999999998766     899999999999


Q ss_pred             EecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          609 SADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       609 t~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +||||+|||+++|+||++|+++||+|+.||+
T Consensus       431 s~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl  461 (463)
T PLN02226        431 TYDHRLIDGREAVYFLRRVKDVVEDPQRLLL  461 (463)
T ss_pred             ecchhhhCcHHHHHHHHHHHHHhcCHHHHhh
Confidence            9999999999999999999999999998875

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=2.8e-75  Score=586.38  Aligned_cols=407  Identities=26%  Similarity=0.365  Sum_probs=336.1

Q ss_pred             CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594           83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus        83 ~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      ....+.|+|.|+||+|.|++|.+|+|||||+|+++|.||||++||++++|+|+++|+|++|+...+|. +.||++|.+++
T Consensus        61 ~~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~e  139 (474)
T KOG0558|consen   61 NSGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDLE  139 (474)
T ss_pred             ccceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeeee
Confidence            45689999999999999999999999999999999999999999999999999999999999999999 99999999997


Q ss_pred             cCCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCcccc
Q 006594          163 EDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEV  242 (639)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~  242 (639)
                      .++.........                .         ++.   .                                   
T Consensus       140 ve~~~ds~e~s~----------------e---------s~~---v-----------------------------------  156 (474)
T KOG0558|consen  140 VEDSQDSPEDSD----------------E---------SPA---V-----------------------------------  156 (474)
T ss_pred             eccCcCCcccCC----------------c---------ccc---c-----------------------------------
Confidence            655321100000                0         000   0                                   


Q ss_pred             CCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCCCcCCcCCCCCCCcccCCCCCCCCCCccccc
Q 006594          243 GDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVK  322 (639)
Q Consensus       243 gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (639)
                                                   ..|..                 ..                          .
T Consensus       157 -----------------------------s~~~~-----------------~~--------------------------~  164 (474)
T KOG0558|consen  157 -----------------------------SLGES-----------------KQ--------------------------G  164 (474)
T ss_pred             -----------------------------cCCCC-----------------ch--------------------------h
Confidence                                         00000                 00                          0


Q ss_pred             cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccc-cCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006594          323 VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSR-ISSHTEKTSPSPLPQTSTAVSPGSKS  401 (639)
Q Consensus       323 ~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~~  401 (639)
                      ..+.....++|++|+||.|+|||++.|.|||++|||+|+||++|+.+..+... +.+...  +..  +.+.|     +..
T Consensus       165 ~~~~~~tlaTPaVRrlA~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~--a~~--~~~~p-----s~~  235 (474)
T KOG0558|consen  165 EESLLKTLATPAVRRLAKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEH--AVI--PGPSP-----STK  235 (474)
T ss_pred             hhhccccccCHHHHHHHHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCcee--ecC--CCCCC-----ccc
Confidence            00112234899999999999999999999999999999999999975422110 110000  000  00111     110


Q ss_pred             CccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh---hhCCCCcCHHHHHHHHHHHHHhhC
Q 006594          402 DLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNV  478 (639)
Q Consensus       402 ~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~---~~~g~kls~~~~likAva~Al~~~  478 (639)
                      ..+.-.....+|+.+.+|+|.+.|.++ ..||||.+..|||+|.|+++|.+++   ...|+|+||++|++||++.||.++
T Consensus       236 a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~dEIn~~sLvklr~elk~~a~e~~IKltfmPf~iKaaSlaL~ky  314 (474)
T KOG0558|consen  236 ASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYVDEINCDSLVKLRQELKENAKERGIKLTFMPFFIKAASLALLKY  314 (474)
T ss_pred             ccCcccccceeechhHHHHHHHHHHHH-hcCCccccccccChHHHHHHHHHHhhhhhhcCceeeehHHHHHHHHHHHhhC
Confidence            111111134579999999999999998 8999999999999999999999987   357899999999999999999999


Q ss_pred             cccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCC
Q 006594          479 PEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG  558 (639)
Q Consensus       479 P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG  558 (639)
                      |.+|+.++..-.+|++..+.|||+|++|+.||++|.|+|++.+|+.||++++++|.+..+.|+|+++|+.|||||+||+|
T Consensus       315 P~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG  394 (474)
T KOG0558|consen  315 PIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIG  394 (474)
T ss_pred             ccccchhhhhhhhhhhhcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecc
Confidence            99999998864559999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594          559 MFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL  638 (639)
Q Consensus       559 ~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll  638 (639)
                      .+|.++..|+|++|+++|.++|++.+.|....  .|  ++....+|.|+|++||||+||+..|||-+.+++|||||..||
T Consensus       395 ~IGGtf~~P~i~~PeVAIgAlGrie~vPrFnk--k~--~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~ml  470 (474)
T KOG0558|consen  395 AIGGTFASPVIMPPEVAIGALGRIEKVPRFNK--KG--EVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALML  470 (474)
T ss_pred             cccccccCcccccchhhhhhccccccccccCC--CC--CEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHh
Confidence            99999999999999999999999998766532  33  799999999999999999999999999999999999999887


Q ss_pred             C
Q 006594          639 L  639 (639)
Q Consensus       639 ~  639 (639)
                      |
T Consensus       471 l  471 (474)
T KOG0558|consen  471 L  471 (474)
T ss_pred             h
Confidence            5

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=100.00  E-value=7.2e-74  Score=616.60  Aligned_cols=370  Identities=29%  Similarity=0.457  Sum_probs=305.3

Q ss_pred             CceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       211 ~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      ...+++||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|.+.
T Consensus        43 ~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~~  121 (418)
T PTZ00144         43 SIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDTG  121 (418)
T ss_pred             cceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcCC
Confidence            457999999999999999999999999999999999999999999999999999999999999999 9999999999654


Q ss_pred             CCCcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594          291 PGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG  370 (639)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~  370 (639)
                      ++..++..   .++  + ++.+. . ..+.+      .....|.+++++.+.+++...+..               .. .
T Consensus       122 ~~~~~~~~---~~~--~-~~~~~-~-~~~~~------~~~~~p~~~~~a~~~~~a~p~vr~---------------~~-~  171 (418)
T PTZ00144        122 GAPPAAAP---AAA--A-AAKAE-K-TTPEK------PKAAAPTPEPPAASKPTPPAAAKP---------------PE-P  171 (418)
T ss_pred             Cccccccc---ccc--C-CCCCc-c-CCCCC------CCCCCCccccccccccCCchhhhc---------------cc-c
Confidence            43211100   000  0 00000 0 00000      001125566666666665555520               00 0


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHH
Q 006594          371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR  450 (639)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r  450 (639)
                        .+    ++   +      ..+   .+.  . ......+.+|+++|||.||++|.+|++++||||++.++|+|+|+++|
T Consensus       172 --~~----~~---~------~~~---~~~--~-~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~r  230 (418)
T PTZ00144        172 --AP----AA---K------PPP---TPV--A-RADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMELR  230 (418)
T ss_pred             --CC----CC---C------CCC---CCc--c-ccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHHH
Confidence              00    00   0      000   000  0 00001234799999999999999999999999999999999999999


Q ss_pred             HHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHH
Q 006594          451 KELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI  526 (639)
Q Consensus       451 k~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei  526 (639)
                      +++++    +.|.++||++||+||+++||++||.||++|+++.  |++|+++|||+||++++||++|||++++++++.+|
T Consensus       231 ~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~--i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eI  308 (418)
T PTZ00144        231 KEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDE--IVYRNYVDISVAVATPTGLVVPVIRNCENKSFAEI  308 (418)
T ss_pred             HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCE--EEEecCCCEEEEEECCCCEEEccCCCcccCCHHHH
Confidence            99984    3488999999999999999999999999998764  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEE
Q 006594          527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL  606 (639)
Q Consensus       527 ~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~l  606 (639)
                      ++++++|++++|+|+|+++|++||||||||+|++|+++|+||||+||+|||++|++.++|++.+|     ++++|++|+|
T Consensus       309 a~ei~~L~~~ar~g~L~~~e~~GgTfTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g-----~i~~r~~m~l  383 (418)
T PTZ00144        309 EKELADLAEKARNNKLTLEDMTGGTFTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGN-----EIVIRPIMYL  383 (418)
T ss_pred             HHHHHHHHHHHHcCCCCHHHhCCceEEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECC-----EEEEEeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999998765     7999999999


Q ss_pred             EEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          607 TLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       607 slt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      ||+||||++||+++|+||++|+++||+|+.||+
T Consensus       384 sLs~DHRviDGa~AA~FL~~lk~~LE~P~~lll  416 (418)
T PTZ00144        384 ALTYDHRLIDGRDAVTFLKKIKDLIEDPARMLL  416 (418)
T ss_pred             EEecchhhhChHHHHHHHHHHHHHhcCHHHHhh
Confidence            999999999999999999999999999998874

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=100.00  E-value=1.3e-68  Score=540.99  Aligned_cols=379  Identities=30%  Similarity=0.425  Sum_probs=301.6

Q ss_pred             ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      ..++..|.++++++||.|..|++++||+|++++.||+|||||.+++|.||.+|+|.++++++||+ |..|+.|+.|....
T Consensus        72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~ga  150 (457)
T KOG0559|consen   72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISPGA  150 (457)
T ss_pred             eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecCCC
Confidence            56788899999999999999999999999999999999999999999999999999999999999 99999999996543


Q ss_pred             CCcCCcCCCCCCCcccCCCCCCCC-CCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594          292 GDVGTVKNSVTSGAEVKGEKETHH-DSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG  370 (639)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~  370 (639)
                      +..+..    .++|..++++.++. .+++.+.+. .......|.++                                  
T Consensus       151 Apa~~~----~~apa~~~pk~~~a~~a~p~~~s~-~~p~~~apv~e----------------------------------  191 (457)
T KOG0559|consen  151 APAKGG----ASAPAKAEPKTAPAAAAPPKPSSK-PPPKEAAPVAE----------------------------------  191 (457)
T ss_pred             CCcccc----ccCCCccCCCCCCCCCCCCCccCC-CCccccCCCCC----------------------------------
Confidence            222110    11111111111110 000000000 00000000000                                  


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHH
Q 006594          371 KVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFR  450 (639)
Q Consensus       371 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r  450 (639)
                       .++.+.+.++..+.......+++...+.. ....+....+++|++||+.||.+|.+|..+...++.+.|||+++|+++|
T Consensus       192 -~p~~p~~~~P~~~~a~k~~v~~~~~~p~~-~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~mR  269 (457)
T KOG0559|consen  192 -SPPAPSSPEPVPASAKKPSVAQPKPPPSE-GATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEMR  269 (457)
T ss_pred             -CCCCCCCCCCCCccccCccccCCCCCccc-ccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence             00000000000000000000000000011 1111234677899999999999999999899999999999999999999


Q ss_pred             HHHh----hhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHH
Q 006594          451 KELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI  526 (639)
Q Consensus       451 k~~~----~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei  526 (639)
                      |+++    +++|+|+.|+.+|+||++.||++.|.+|+.++++.  |+|+|++||++||+|++||++|||||++.+++.+|
T Consensus       270 k~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~--iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adI  347 (457)
T KOG0559|consen  270 KQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDD--IVYRDYVDISVAVATPKGLVVPVIRNAESMNFADI  347 (457)
T ss_pred             HHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCe--eEEeecceeEEEeecCCceeeeeecccccccHHHH
Confidence            9988    57999999999999999999999999999999986  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEE
Q 006594          527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL  606 (639)
Q Consensus       527 ~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~l  606 (639)
                      -.++..|..+||+|+|..+||.||||||||-|.||..+.|||||+||++||++.+|.+||++++|     ++++|++|.|
T Consensus       348 E~~i~~L~~KAr~g~laiedM~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G-----~Vv~RPMMYv  422 (457)
T KOG0559|consen  348 EKTIAGLGKKARDGKLAIEDMAGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGG-----QVVPRPMMYV  422 (457)
T ss_pred             HHHHHHHHHhhccCceeeeeccCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCC-----EeeeccceEE
Confidence            99999999999999999999999999999999999999999999999999999999999999998     9999999999


Q ss_pred             EEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          607 TLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       607 slt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      .||||||+|||.++.-||+.+++++|||..|||
T Consensus       423 ALTYDHRliDGREAVtFLr~iK~~VEDP~~mll  455 (457)
T KOG0559|consen  423 ALTYDHRLIDGREAVTFLRKIKEAVEDPRKMLL  455 (457)
T ss_pred             EeeccccccccHHHHHHHHHHHHHhhCHHHHhh
Confidence            999999999999999999999999999999886

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=100.00  E-value=3.1e-67  Score=556.78  Aligned_cols=296  Identities=33%  Similarity=0.483  Sum_probs=256.7

Q ss_pred             CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCC
Q 006594          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSD  407 (639)
Q Consensus       328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~  407 (639)
                      ..++||+||+||+|+|||++.|+||||+|||+++||++|+.......  ..++.. + .   ...+  +.+. +. +...
T Consensus        48 ~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~~~~-~-~---~~~~--~~~~-~~-~~~~  116 (347)
T PRK14843         48 VVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIEND--SIKSPA-Q-I---EKVE--EVPD-NV-TPYG  116 (347)
T ss_pred             cccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCc--cccCCC-C-C---cccc--CCCc-cc-ccCC
Confidence            34699999999999999999999999999999999999974321000  000000 0 0   0000  0000 00 0111


Q ss_pred             CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccce
Q 006594          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANA  483 (639)
Q Consensus       408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~  483 (639)
                      ..+.+|+++|||.||++|.+|++++||||++.+||+|+|+++|++++.    +.|.++||++||+||++.||++||.||+
T Consensus       117 ~~~~v~l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na  196 (347)
T PRK14843        117 EIERIPMTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINA  196 (347)
T ss_pred             cceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeE
Confidence            245679999999999999999999999999999999999999999873    3478999999999999999999999999


Q ss_pred             eeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCcc
Q 006594          484 YWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVD  563 (639)
Q Consensus       484 ~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~  563 (639)
                      +|+++..+|++|++|||||||++++||++|||++++++++.+|++++++|.+++|+|+|+++||+||||||||+|+||++
T Consensus       197 ~~~~~~~~i~~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISNlG~~G~~  276 (347)
T PRK14843        197 SLTEDGKTIITHNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISNLGMFGVQ  276 (347)
T ss_pred             EEecCCCeEEEecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCCCccc
Confidence            99865345999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          564 QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       564 ~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +|+|||||||+|||++|++.++|++++|     ++++|++|+|||+||||++||+++++||+.|+++||+|..||+
T Consensus       277 ~~tpIInpPq~aIlgvG~i~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~  347 (347)
T PRK14843        277 SFGPIINQPNSAILGVSSTIEKPVVVNG-----EIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI  347 (347)
T ss_pred             ceeccccCCceEEEecCCcceeeEEECC-----eEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence            9999999999999999999999988765     7999999999999999999999999999999999999998874

>PRK11857 dihydrolipoamide acetyltransferase; Reviewed

Probab=100.00  E-value=7.9e-67  Score=544.95  Aligned_cols=300  Identities=31%  Similarity=0.384  Sum_probs=256.0

Q ss_pred             ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCC
Q 006594          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDS  408 (639)
Q Consensus       329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  408 (639)
                      .++||+||+||+|+|||++.|+|||++|||+++||++|+.......  .+++.. +.+.. ...++...+...  .....
T Consensus         2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~~--~~~~~   75 (306)
T PRK11857          2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAP--TPAEAA-SVSSA-QQAAKTAAPAAA--PPKLE   75 (306)
T ss_pred             cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhcccccc--CCcccc-ccccc-cccccccCCccc--ccCCC
Confidence            4589999999999999999999999999999999999975321100  000000 00000 000000000000  01111


Q ss_pred             cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (639)
Q Consensus       409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~  484 (639)
                      .+.+|+++||+.|+++|.+|++++||||++.+||+|+|+++|+++++    ++|.++||++||+||+++||++||.+|++
T Consensus        76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~  155 (306)
T PRK11857         76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAK  155 (306)
T ss_pred             ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEE
Confidence            34579999999999999999999999999999999999999999974    25889999999999999999999999999


Q ss_pred             eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (639)
Q Consensus       485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~  564 (639)
                      |+++.++|+++++||||+||++++||++|||++++++|+.+|++++++|.+++|+|+|.++|++||||||||+|++|..+
T Consensus       156 ~~~~~~~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISNlG~~G~~~  235 (306)
T PRK11857        156 YDEATSELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITNYGSVGSLY  235 (306)
T ss_pred             EeCCCCEEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeCCCCCCccc
Confidence            98654569999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+||||+||+|||++|++.++|++.+|     ++++|++|+|||+||||++||+++++||++|+++||+|+.|++
T Consensus       236 ~tpiIn~pq~aILgvG~i~~~pvv~~g-----~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~l~~  305 (306)
T PRK11857        236 GVPVINYPELAIAGVGAIIDKAIVKNG-----QIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEILGV  305 (306)
T ss_pred             eecccCCCccceeecccceEEeEEECC-----EEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhc
Confidence            999999999999999999999988665     7999999999999999999999999999999999999997753

>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2

Probab=100.00  E-value=2.1e-56  Score=451.13  Aligned_cols=226  Identities=47%  Similarity=0.726  Sum_probs=201.3

Q ss_pred             CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhh---CCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK---HNTKVSVNDIVIKAVAVALKNVPEANAY  484 (639)
Q Consensus       408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~---~g~kls~~~~likAva~Al~~~P~ln~~  484 (639)
                      +++++|++++||+||++|.+|++++||+|++.+||+|+|+++|++++++   .+.++|+++|++||+++||++||+||++
T Consensus         3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~~~kis~~~~likAva~AL~~~P~lNa~   82 (231)
T PF00198_consen    3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEPGGKISITDFLIKAVALALKEHPELNAS   82 (231)
T ss_dssp             SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHTTST-THHHHHHHHHHHHHHHSGGGSEE
T ss_pred             CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhhccCCChhHeeeehHhhhhHHHHHhccc
Confidence            4678899999999999999999999999999999999999999999853   3569999999999999999999999999


Q ss_pred             eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (639)
Q Consensus       485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~  564 (639)
                      |+++. +|++|+++|||+||++++||++|||++++++|+.||+++++++.+++|+|+|.++|++||||||||+|++|+++
T Consensus        83 ~~~~~-~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisNlG~~g~~~  161 (231)
T PF00198_consen   83 WDGDG-EIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISNLGMFGVES  161 (231)
T ss_dssp             EETTS-EEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEEGGGTT-SC
T ss_pred             ccccc-ceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeeecCCCCcce
Confidence            98874 79999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+|||||||+|||++|++.++|++.+|     +++++++|++||+||||++||+++++||++|+++||+|++|||
T Consensus       162 ~~pii~~pq~ail~vG~i~~~p~~~~~-----~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p~~lll  231 (231)
T PF00198_consen  162 FTPIINPPQVAILGVGAIRDRPVVEDG-----EVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENPERLLL  231 (231)
T ss_dssp             EE----TTSSEEEEEEEEEEEEEEETT-----CEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHSTHHHCC
T ss_pred             eEccCCcccceEEEecceEEEEEEEec-----cceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCHHHHhC
Confidence            999999999999999999999998665     7999999999999999999999999999999999999999987

3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=100.00  E-value=5.5e-45  Score=409.03  Aligned_cols=222  Identities=23%  Similarity=0.302  Sum_probs=204.5

Q ss_pred             ccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh----hhCCCCcCHHHHHHHHHHHHHhhCcccceee
Q 006594          410 EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAYW  485 (639)
Q Consensus       410 ~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~----~~~g~kls~~~~likAva~Al~~~P~ln~~~  485 (639)
                      +..|+++++++|+++|..| ..+|+++...+|+++.|+++|+.+|    +..|.|+||+++|+||+++||++||.+|++|
T Consensus       116 ~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNasy  194 (1228)
T PRK12270        116 EVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRHY  194 (1228)
T ss_pred             ceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhcee
Confidence            4569999999999999999 5699999999999999999999987    3568899999999999999999999999999


Q ss_pred             cc--CCCeEEEcCCccEEEEEecC-----CCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCC
Q 006594          486 DV--EKGEIVLCDAIDISIAVATE-----KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLG  558 (639)
Q Consensus       486 ~~--~~~~i~~~~~v~i~iAV~~~-----~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG  558 (639)
                      +.  +++.|+++++||||+||+++     +||+||+|+++++++|.+|..++++++.+||+|+|+++||+||||||||+|
T Consensus       195 ~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN~G  274 (1228)
T PRK12270        195 AEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTNPG  274 (1228)
T ss_pred             eccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEecCC
Confidence            84  33459999999999999998     589999999999999999999999999999999999999999999999999


Q ss_pred             CCCccceeeccCCCcceEEEecCceEEEEEeeCCC-CCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHh
Q 006594          559 MFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSD-GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFS  632 (639)
Q Consensus       559 ~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~-G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le  632 (639)
                      +||..+|+||||+||+|||++|++...+++.+..+ -..++.++++|+||+|||||+|||+++++||+.|+++|+
T Consensus       275 ~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~FL~~ik~lLe  349 (1228)
T PRK12270        275 GIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEFLRTIHQLLL  349 (1228)
T ss_pred             cccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHHHHHHHHHHh
Confidence            99999999999999999999999997766543210 012799999999999999999999999999999999998

>PRK13757 chloramphenicol acetyltransferase; Provisional

Probab=99.95  E-value=5e-27  Score=233.99  Aligned_cols=193  Identities=15%  Similarity=0.106  Sum_probs=164.8

Q ss_pred             HHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCC
Q 006594          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA  497 (639)
Q Consensus       418 r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~  497 (639)
                      ||.--.-...  ...|+|+++++||||+|+++.|+.      +++|++.+++|+++|+|++|+||.++.+++  ++.||.
T Consensus        18 RkehF~~f~~--~~~~~fsiT~~iDiT~l~~~~K~~------~~~fy~~~ly~v~kavN~~~eFR~r~~~~~--v~~~D~   87 (219)
T PRK13757         18 RKEHFEAFQS--VAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDGE--LVIWDS   87 (219)
T ss_pred             cHHHHHHHhc--CCCCceEEEEEEEHHHHHHHHHHc------CCChHHHHHHHHHHHHhcCHhHheEEECCe--EEEEeE
Confidence            4444444432  234559999999999999999998      899999999999999999999999997654  999999


Q ss_pred             ccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCCCCCCCCeEEEEeCCCCCccceee-ccCCC--c
Q 006594          498 IDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAPHEFQGGTFSISNLGMFPVDQFCA-IINPP--Q  573 (639)
Q Consensus       498 v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~~d~~ggtftISnlG~~g~~~~~p-ii~~p--~  573 (639)
                      ++++++|.++++.++..++..+..++.+|.+.....++++++. .+.++......|.||+++|+.+++|+. +.+..  .
T Consensus        88 i~ps~Ti~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~  167 (219)
T PRK13757         88 VHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFF  167 (219)
T ss_pred             EeeeEEEEeCCCceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCc
Confidence            9999999988876778999999999999999988888888876 455555566799999999999999874 33333  3


Q ss_pred             ceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594          574 AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD  633 (639)
Q Consensus       574 ~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~  633 (639)
                      +|++++||+.++    +|         |.+||||+++||.++||+|+++|++.||++|++
T Consensus       168 ~P~it~GKy~~~----~g---------r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~  214 (219)
T PRK13757        168 APVFTMGKYYTQ----GD---------KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE  214 (219)
T ss_pred             CcEEEeeceEEE----CC---------EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence            789999999865    44         899999999999999999999999999999987

>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2

Probab=99.95  E-value=6.7e-27  Score=231.76  Aligned_cols=180  Identities=19%  Similarity=0.204  Sum_probs=144.4

Q ss_pred             cCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC
Q 006594          429 KQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK  508 (639)
Q Consensus       429 ~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~  508 (639)
                      ....|+|+++.+||||+|++++|+.      +++|++++++++++|+|++|+||.+++++ |++++||.++++++|.+++
T Consensus        22 ~~~~p~~svT~~lDvT~l~~~~K~~------~~~Ff~~~ly~i~ka~N~~~efR~ri~~~-g~v~~~d~i~ps~Tv~~~~   94 (206)
T PF00302_consen   22 NFDNPYFSVTVNLDVTNLYKYAKEK------GLSFFPAYLYAIMKAANEIPEFRYRIVDD-GEVVYYDRIDPSYTVFHKD   94 (206)
T ss_dssp             TTSBEEEEEEEEEE-HHHHHHHHHT------T--HHHHHHHHHHHHHTTSGGGCEEEETT-SCEEEESS-EEEEEEEETT
T ss_pred             cCCCceEecceeEEhHHHHHHHHHc------CCCcHHHHHHHHHHHHhcCHHHheeeeCC-CcEEEECCcceeeeEEeCC
Confidence            3578999999999999999999998      89999999999999999999999999887 5699999999999999776


Q ss_pred             CeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCCCC-CCCCeEEEEeCCCCCccceeec-cCCC--cceEEEecCce
Q 006594          509 GLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAPHE-FQGGTFSISNLGMFPVDQFCAI-INPP--QAGILAVGRGN  583 (639)
Q Consensus       509 gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~~d-~~ggtftISnlG~~g~~~~~pi-i~~p--~~ail~vG~~~  583 (639)
                      +..+..++..+..++.+|.+...+.++++++. .+.++. .....|.+|+++|+.+++++.- -+.+  ..|++++||+.
T Consensus        95 ~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~GK~~  174 (206)
T PF00302_consen   95 DETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWGKYF  174 (206)
T ss_dssp             TTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE--E
T ss_pred             CCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEeeeeE
Confidence            55777888999999999999999999888764 455443 3457999999999999998754 3333  28999999998


Q ss_pred             EEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHH
Q 006594          584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALC  628 (639)
Q Consensus       584 ~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~  628 (639)
                      ++    +|         |..||||+++||+++||+|+++|++.||
T Consensus       175 ~~----~g---------r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ  206 (206)
T PF00302_consen  175 EE----NG---------RLLMPVSIQVHHALVDGYHVGQFFEELQ  206 (206)
T ss_dssp             EE----TT---------EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred             eE----CC---------EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence            76    44         8999999999999999999999999987

3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....

>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated

Probab=99.94  E-value=2.5e-26  Score=263.26  Aligned_cols=181  Identities=22%  Similarity=0.300  Sum_probs=149.4

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .+.|+||+||  |+||+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++||. |++|++|+.|+.++
T Consensus         2 ~~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~~-V~~G~~l~~i~~~~   78 (633)
T PRK11854          2 AIEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGDK-VETGALIMIFESAD   78 (633)
T ss_pred             CceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCCE-EeCCCEEEEEeccc
Confidence            3579999999  99999999999999999999999999999999999999999999999999999 99999999996542


Q ss_pred             cccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCe
Q 006594          166 DDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDV  245 (639)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~  245 (639)
                      ....    ..+    +   ... ....+   .+. +.+    ......++.||++|  +.+|+|.+|+|++||.|++||+
T Consensus        79 ~~~~----~~~----~---~~~-~~~~~---~~~-~~~----~~~~~~~i~lp~~g--~~eg~v~~~~v~~Gd~V~~g~~  136 (633)
T PRK11854         79 GAAD----AAP----A---QAE-EKKEA---APA-AAP----AAAAAKDVHVPDIG--SDEVEVTEILVKVGDTVEAEQS  136 (633)
T ss_pred             cccc----ccc----c---ccc-ccccc---ccc-ccc----ccCCceEEecccCC--CCCceEeEEEeCCCCEECCCCE
Confidence            1100    000    0   000 00000   000 000    11234689999999  9999999999999999999999


Q ss_pred             eeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          246 ICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       246 l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      ||++|+||+.++|.||++|+|.++++++|+. |..|++|+.|...++
T Consensus       137 l~~vEa~K~~~~I~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~~~  182 (633)
T PRK11854        137 LITVEGDKASMEVPAPFAGTVKEIKVNVGDK-VSTGSLIMVFEVAGE  182 (633)
T ss_pred             eeeeehhhceeEEeCCCCEEEEEEEecCCCE-EcCCcEeeEEecccc
Confidence            9999999999999999999999999999999 999999999976443

>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]

Probab=99.88  E-value=1.4e-21  Score=186.45  Aligned_cols=188  Identities=16%  Similarity=0.135  Sum_probs=163.9

Q ss_pred             CCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCC
Q 006594          430 QNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKG  509 (639)
Q Consensus       430 ~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~g  509 (639)
                      ..+||+.++.++|+|.++.+.|++      +++|++++++|+.+++++|+|||.++.++.  +++||.+++.++|.++++
T Consensus        26 ~~~p~y~i~~~LDvtn~~~~vk~~------~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~--~~~~d~v~p~~tv~~~~~   97 (219)
T COG4845          26 LQYPHYDINLQLDVTNFYGYVKEN------GLSFFPALLYAVTRCANRHQEFRLRIQNGQ--LGYWDNVPPMYTVFHGET   97 (219)
T ss_pred             cccceEeeeeeeehhHHHHHHHHc------CCcchHHHHHHHHHHhcccHHhHhhhcCCe--eEEeecCCcceEEEcCCC
Confidence            588999999999999999999998      899999999999999999999999998865  999999999999999988


Q ss_pred             eEEeeeecCCcCCHHHHHHHHHHHHHHHHcCC-CCCCCCC-CCeEEEEeCCCCCccceeeccCCCc---ceEEEecCceE
Q 006594          510 LMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQ-GGTFSISNLGMFPVDQFCAIINPPQ---AGILAVGRGNQ  584 (639)
Q Consensus       510 l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~-l~~~d~~-ggtftISnlG~~g~~~~~pii~~p~---~ail~vG~~~~  584 (639)
                      .++.+++.....++.+|++....-+++.+++. +.+++-. .....+||++|+.+++++.-++...   .+|+.+|+..+
T Consensus        98 e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~k~~~~PiF~~Grf~~  177 (219)
T COG4845          98 ETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRNKIYGQPIFYAGRFYE  177 (219)
T ss_pred             cEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCCccccceeEeecceec
Confidence            88899999999999999999888888887764 3333332 2356789999999998886655332   78999999985


Q ss_pred             EEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594          585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL  638 (639)
Q Consensus       585 ~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll  638 (639)
                      +       ||      +-.||+++++||..+||.|+++|++.|++++++|-.+.
T Consensus       178 ~-------~G------kl~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~~~  218 (219)
T COG4845         178 E-------DG------KLTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPCIP  218 (219)
T ss_pred             c-------CC------eEEEeEEEEecccccchhhHHHHHHHHHHHhcCCCCCC
Confidence            4       44      67899999999999999999999999999999987653

>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]

Probab=99.85  E-value=1.5e-21  Score=206.96  Aligned_cols=95  Identities=60%  Similarity=0.989  Sum_probs=90.9

Q ss_pred             CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594           83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus        83 ~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      ++.|+.|.||.|+++|+||.|++|.+||||.+++||+||||||||++|++++.++|++.||++++|.+||++|++||+|.
T Consensus        35 ~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi~EGskdvpVGk~Iaiiv  114 (470)
T KOG0557|consen   35 LPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILIEEGSKDVPVGKPIAIIV  114 (470)
T ss_pred             CCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeeeccCcccccCCCceEEEe
Confidence            68999999999999999999999999999999999999999999999999999999999999999988899999999999


Q ss_pred             cCCcccccccccccC
Q 006594          163 EDADDIQHIPATIAG  177 (639)
Q Consensus       163 ~~~~~~~~~~~~~~~  177 (639)
                      +.+++..+++.+..+
T Consensus       115 e~e~di~~~k~~k~~  129 (470)
T KOG0557|consen  115 EDEDDIAAFKLPKDE  129 (470)
T ss_pred             cccccHHHhhccccc
Confidence            999998888777553

>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]

Probab=99.80  E-value=1.2e-19  Score=197.46  Aligned_cols=82  Identities=50%  Similarity=0.763  Sum_probs=78.7

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      +.++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++||+ |++|++|++|+++
T Consensus         1 m~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~~-V~Vg~~I~~i~~~   79 (404)
T COG0508           1 MAIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGDT-VPVGAVIARIEEE   79 (404)
T ss_pred             CCceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCCE-EcCCCeEEEEecC
Confidence            357899999999999999999999999999999999999999999999999999999999999999 9999999999887


Q ss_pred             Ccc
Q 006594          165 ADD  167 (639)
Q Consensus       165 ~~~  167 (639)
                      +++
T Consensus        80 ~~~   82 (404)
T COG0508          80 GAD   82 (404)
T ss_pred             CCc
Confidence            664

>PLN02226 2-oxoglutarate dehydrogenase E2 component

Probab=99.76  E-value=3.7e-18  Score=186.17  Aligned_cols=88  Identities=31%  Similarity=0.545  Sum_probs=80.1

Q ss_pred             ccccccCCCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccC
Q 006594           75 VRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPV  154 (639)
Q Consensus        75 ~r~~~~~~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~  154 (639)
                      .|.|....-.+ ++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |++
T Consensus        81 ~~~~~~~~~~m-~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd~-V~v  158 (463)
T PLN02226         81 VRPFSSESGDT-VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGDT-VEP  158 (463)
T ss_pred             ccccccccCCc-eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCCE-ecC
Confidence            45554433334 8999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCcEEEEecC
Q 006594          155 GQPIAITVED  164 (639)
Q Consensus       155 G~~l~~i~~~  164 (639)
                      |++|+.|++.
T Consensus       159 G~~L~~I~~~  168 (463)
T PLN02226        159 GTKVAIISKS  168 (463)
T ss_pred             CCEEEEeccC
Confidence            9999999644

>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]

Probab=99.74  E-value=1.6e-18  Score=177.25  Aligned_cols=81  Identities=36%  Similarity=0.617  Sum_probs=77.4

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      ...+++++|.|+|+|+||+|.+|++++||+|++|+.||+|||||.+++|.||.+|+|.+++|++||+ |..||.|+.|..
T Consensus        70 ts~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gdt-V~~g~~la~i~~  148 (457)
T KOG0559|consen   70 TSVVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGDT-VTPGQKLAKISP  148 (457)
T ss_pred             cceeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCCc-ccCCceeEEecC
Confidence            3468999999999999999999999999999999999999999999999999999999999999999 999999999987


Q ss_pred             CC
Q 006594          164 DA  165 (639)
Q Consensus       164 ~~  165 (639)
                      ..
T Consensus       149 ga  150 (457)
T KOG0559|consen  149 GA  150 (457)
T ss_pred             CC
Confidence            53

>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex

Probab=99.71  E-value=3.4e-17  Score=182.23  Aligned_cols=93  Identities=60%  Similarity=1.026  Sum_probs=86.6

Q ss_pred             ccccccccC-CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-c
Q 006594           73 IGVRHFSSS-ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-K  150 (639)
Q Consensus        73 ~~~r~~~~~-~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~  150 (639)
                      ...|.|++. .++.+++|.||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.+|++++|+ .
T Consensus        98 ~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETDKa~~evea~~~G~l~ki~~~eG~~~  177 (539)
T PLN02744         98 QSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGAKE  177 (539)
T ss_pred             cccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeeccceeEecCCCCcEEEEEEecCCCcc
Confidence            457999886 78889999999999999999999999999999999999999999999999999999999999999996 7


Q ss_pred             cccCCCcEEEEecCCc
Q 006594          151 DVPVGQPIAITVEDAD  166 (639)
Q Consensus       151 ~v~~G~~l~~i~~~~~  166 (639)
                       |++|++|++|.++++
T Consensus       178 -v~vG~~ia~i~~~~~  192 (539)
T PLN02744        178 -IKVGEVIAITVEEEE  192 (539)
T ss_pred             -cCCCCEEEEEccCcc
Confidence             999999999865443

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional

Probab=99.71  E-value=3.8e-17  Score=177.20  Aligned_cols=81  Identities=32%  Similarity=0.648  Sum_probs=77.3

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      ..+++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.
T Consensus        42 ~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~~-V~~G~~L~~I~~  120 (418)
T PTZ00144         42 FSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDT-VEVGAPLSEIDT  120 (418)
T ss_pred             ccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCCE-ecCCCEEEEEcC
Confidence            4458999999999999999999999999999999999999999999999999999999999999999 999999999975


Q ss_pred             CC
Q 006594          164 DA  165 (639)
Q Consensus       164 ~~  165 (639)
                      .+
T Consensus       121 ~~  122 (418)
T PTZ00144        121 GG  122 (418)
T ss_pred             CC
Confidence            44

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.71  E-value=1.5e-17  Score=138.73  Aligned_cols=74  Identities=46%  Similarity=0.690  Sum_probs=72.0

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      ++|++|.+|..+.+++|.+|+|++||.|++||+||+||+||+.++|+||++|+|+++++++|+. |..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 9999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>PRK05704 dihydrolipoamide succinyltransferase; Validated

Probab=99.66  E-value=3.4e-16  Score=170.60  Aligned_cols=80  Identities=36%  Similarity=0.601  Sum_probs=76.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|++.+
T Consensus         2 ~~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~   80 (407)
T PRK05704          2 MVEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGDT-VTVGQVLGRIDEGA   80 (407)
T ss_pred             CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999 99999999997654


Q ss_pred             c
Q 006594          166 D  166 (639)
Q Consensus       166 ~  166 (639)
                      +
T Consensus        81 ~   81 (407)
T PRK05704         81 A   81 (407)
T ss_pred             c
Confidence            3

>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid

Probab=99.66  E-value=1.2e-16  Score=133.28  Aligned_cols=74  Identities=42%  Similarity=0.672  Sum_probs=71.9

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      +++++|.+|..+.++++.+|++++||.|++||+||+|||||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus         1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~~-V~~G~~l~~I   74 (74)
T PF00364_consen    1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGDT-VEVGQVLAII   74 (74)
T ss_dssp             EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTEE-EETTSEEEEE
T ss_pred             CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4789999999999999999999999999999999999999999999999999999999999999 9999999986

Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....

>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

Probab=99.64  E-value=8.5e-16  Score=167.15  Aligned_cols=78  Identities=37%  Similarity=0.632  Sum_probs=74.8

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ++|+||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+. |++|++|++|+.++
T Consensus         1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~~-v~vG~~l~~i~~~~   78 (403)
T TIGR01347         1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGDT-VESGQVLAILEEGN   78 (403)
T ss_pred             CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999 99999999997543

dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.63  E-value=1e-15  Score=164.60  Aligned_cols=78  Identities=37%  Similarity=0.632  Sum_probs=75.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      .++|+||++|++|+||+|++|+|++||.|++||+||+||+||++++|+||.+|+|+++++++|+. |.+|++|+.|++.
T Consensus         2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~   79 (371)
T PRK14875          2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADA   79 (371)
T ss_pred             ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            47899999999999999999999999999999999999999999999999999999999999999 9999999999754

>PRK06748 hypothetical protein; Validated

Probab=99.62  E-value=1.9e-15  Score=127.46  Aligned_cols=63  Identities=24%  Similarity=0.286  Sum_probs=60.9

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEc-ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIET-DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~iet-dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      .|+|.+|+|++||.|++||+|++||| ||++++|+||.+|+|.++++++||. |++|++|+.|++
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence            48999999999999999999999999 9999999999999999999999999 999999999953

>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional

Probab=99.61  E-value=1.3e-15  Score=163.78  Aligned_cols=119  Identities=29%  Similarity=0.417  Sum_probs=101.9

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      .++.||++|++|++|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|.....
T Consensus         3 ~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~~-v~~g~~l~~i~~~~~   81 (371)
T PRK14875          3 TPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGET-LPVGALLAVVADAEV   81 (371)
T ss_pred             eEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCCE-eCCCCEEEEEecCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999 999999999954221


Q ss_pred             CcCCcCCCCCCCcccCCCCCCCCCCccccccccCCCccCChhHHhhHHHcCCCcccccccCCCCeeeccch
Q 006594          293 DVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDV  363 (639)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV  363 (639)
                      ..                              ......++|.++++.++ ++++....+++..+.+...++
T Consensus        82 ~~------------------------------~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i  121 (371)
T PRK14875         82 SD------------------------------AEIDAFIAPFARRFAPE-GIDEEDAGPAPRKARIGGRTV  121 (371)
T ss_pred             Cc------------------------------ccccccccchhhhcccc-ccchhhccCCCCcceEcCcEE
Confidence            00                              00112468888888888 899999988888777765555

>PRK06748 hypothetical protein; Validated

Probab=99.58  E-value=3.5e-15  Score=125.84  Aligned_cols=63  Identities=22%  Similarity=0.278  Sum_probs=60.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeec-CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIET-DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vet-dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .|+|.+|+|++||+|++||+|++||| ||++++|+||.+|+|.+|++++|+. |++|++|+.|.+
T Consensus        12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd~-V~vG~~la~I~~   75 (83)
T PRK06748         12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQA-IADQKLLITVRD   75 (83)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEEC
Confidence            48999999999999999999999999 9999999999999999999999999 999999999953

>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

Probab=99.57  E-value=6.3e-15  Score=167.81  Aligned_cols=82  Identities=34%  Similarity=0.526  Sum_probs=77.5

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      .+.++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+. |++|++|+.|++
T Consensus       133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~~-v~vG~~l~~i~~  211 (590)
T TIGR02927       133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDDT-VDVGAEIAKIGD  211 (590)
T ss_pred             CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCCE-ecCCCEEEEEec
Confidence            3458999999999999999999999999999999999999999999999999999999999999999 999999999976


Q ss_pred             CCc
Q 006594          164 DAD  166 (639)
Q Consensus       164 ~~~  166 (639)
                      .++
T Consensus       212 ~~~  214 (590)
T TIGR02927       212 AGA  214 (590)
T ss_pred             CCC
Confidence            543

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.57  E-value=1.6e-14  Score=159.67  Aligned_cols=83  Identities=55%  Similarity=0.905  Sum_probs=77.3

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEEEecCC
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAITVEDA  165 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~i~~~~  165 (639)
                      ++|+||++|++|+||+|.+|+|++||.|++||+||+|||||++++|+|+.+|+|.++++++|+ . |++|++|+.|++++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~-V~vG~~i~~i~~~~   81 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEG-VKVNTPIAVLLEEG   81 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcE-eCCCCEEEEEccCC
Confidence            589999999999999999999999999999999999999999999999999999999999996 6 99999999997765


Q ss_pred             ccccc
Q 006594          166 DDIQH  170 (639)
Q Consensus       166 ~~~~~  170 (639)
                      ++..+
T Consensus        82 ~~~~~   86 (464)
T PRK11892         82 ESASD   86 (464)
T ss_pred             Ccccc
Confidence            54443

>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.52  E-value=4.2e-14  Score=159.92  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=75.6

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .+.|+||++|+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|+.++
T Consensus       116 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~  193 (546)
T TIGR01348       116 VQEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGDS-VPTGDLILTLSVAG  193 (546)
T ss_pred             ceEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCCE-ecCCCEEEEEecCC
Confidence            47999999999 99999999999999999999999999999999999999999999999999999 99999999997654


Q ss_pred             c
Q 006594          166 D  166 (639)
Q Consensus       166 ~  166 (639)
                      +
T Consensus       194 ~  194 (546)
T TIGR01348       194 S  194 (546)
T ss_pred             C
Confidence            3

This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.50  E-value=9e-14  Score=114.97  Aligned_cols=62  Identities=26%  Similarity=0.353  Sum_probs=60.2

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|.+|+|++||.|++||+||+||+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i~   71 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVIS   71 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEEC
Confidence            499999999999999999999999999999999999999999999999999 99999999884

>PLN02528 2-oxoisovalerate dehydrogenase E2 component

Probab=99.48  E-value=1.4e-13  Score=150.81  Aligned_cols=77  Identities=30%  Similarity=0.486  Sum_probs=73.4

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (639)
Q Consensus        89 v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~  166 (639)
                      |+||++|++|+||+|++|+|++||.|++||+||++|+||+.++++|+.+|+|.++++++|+. |.+|++|+.|+.+++
T Consensus         1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~~-v~vG~~l~~i~~~~~   77 (416)
T PLN02528          1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGDI-VKVGETLLKIMVEDS   77 (416)
T ss_pred             CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCCE-eCCCCEEEEEeccCC
Confidence            57999999999999999999999999999999999999999999999999999999999999 999999999975443

>PRK11892 pyruvate dehydrogenase subunit beta; Provisional

Probab=99.48  E-value=1.1e-13  Score=152.96  Aligned_cols=84  Identities=55%  Similarity=0.898  Sum_probs=77.4

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      .+++||++|++|++|+|.+|+|++||.|+.||+|++|||||++++++|+.+|+|.++++++|+.+|++|++|++|.++++
T Consensus         3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~   82 (464)
T PRK11892          3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE   82 (464)
T ss_pred             cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999634999999999987665


Q ss_pred             CcCC
Q 006594          293 DVGT  296 (639)
Q Consensus       293 ~~~~  296 (639)
                      +..+
T Consensus        83 ~~~~   86 (464)
T PRK11892         83 SASD   86 (464)
T ss_pred             cccc
Confidence            5443

>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed

Probab=99.46  E-value=3.3e-13  Score=148.32  Aligned_cols=80  Identities=45%  Similarity=0.666  Sum_probs=76.4

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ...++||++|++|++|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.+
T Consensus         2 ~~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~~-v~~G~~l~~i~~~~   80 (411)
T PRK11856          2 MFEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGDV-VPVGSVIAVIEEEG   80 (411)
T ss_pred             CeeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCCE-eCCCCEEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999 99999999997655


Q ss_pred             c
Q 006594          166 D  166 (639)
Q Consensus       166 ~  166 (639)
                      +
T Consensus        81 ~   81 (411)
T PRK11856         81 E   81 (411)
T ss_pred             C
Confidence            4

>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form

Probab=99.45  E-value=3.4e-13  Score=148.51  Aligned_cols=77  Identities=70%  Similarity=1.152  Sum_probs=73.5

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        89 v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      |.||++|++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|+.+|++|++|++|++.+
T Consensus         2 i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~   78 (435)
T TIGR01349         2 ITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGTKDVPVNKPIAVLVEEK   78 (435)
T ss_pred             cccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence            67999999999999999999999999999999999999999999999999999999999986699999999997644

This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.

>PRK11855 dihydrolipoamide acetyltransferase; Reviewed

Probab=99.45  E-value=3.4e-13  Score=153.11  Aligned_cols=79  Identities=32%  Similarity=0.464  Sum_probs=75.7

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      ...+|+||++|+ |+||+|++|+|++||.|++||.||+||+||+.++|+||++|+|.++++++|+. |.+|++|+.|.+.
T Consensus       118 ~~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~~-v~~G~~l~~i~~~  195 (547)
T PRK11855        118 GVVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGDK-VSVGSLLVVIEVA  195 (547)
T ss_pred             CceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCCE-ecCCCEEEEEecC
Confidence            358999999999 99999999999999999999999999999999999999999999999999999 9999999999765


Q ss_pred             C
Q 006594          165 A  165 (639)
Q Consensus       165 ~  165 (639)
                      +
T Consensus       196 ~  196 (547)
T PRK11855        196 A  196 (547)
T ss_pred             C
Confidence            3

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.42  E-value=6.2e-13  Score=110.33  Aligned_cols=72  Identities=40%  Similarity=0.679  Sum_probs=69.4

Q ss_pred             EecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594           89 VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus        89 v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      +.+|+++.++.+|++.+|++++||.|++||+|+++|+||+.++|.||.+|+|.+++++.|+. +..|+.|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence            57899999999999999999999999999999999999999999999999999999999999 9999999874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.39  E-value=1.3e-12  Score=107.78  Aligned_cols=62  Identities=31%  Similarity=0.330  Sum_probs=60.2

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      -|+|.+|++++||+|++||+|++||+||+.+++.|+.+|+|.++++++|+. |..|++|+.|+
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence            499999999999999999999999999999999999999999999999999 99999999984

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.38  E-value=9.7e-13  Score=123.12  Aligned_cols=62  Identities=32%  Similarity=0.474  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      -|++.+.+|++||+|++||+||.||+||+..+|.||.+|+|++|++++||. |..||+|+.|+
T Consensus        78 ~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~  139 (140)
T COG0511          78 VGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE  139 (140)
T ss_pred             ceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence            499999999999999999999999999999999999999999999999999 99999999985

>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional

Probab=99.34  E-value=2.1e-12  Score=106.77  Aligned_cols=61  Identities=25%  Similarity=0.358  Sum_probs=59.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus        10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~~-V~~G~~l~~i   70 (71)
T PRK05889         10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGDV-IQAGDLIAVI   70 (71)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCCE-ECCCCEEEEE
Confidence            489999999999999999999999999999999999999999999999999 9999999987

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.31  E-value=9.8e-12  Score=114.13  Aligned_cols=61  Identities=21%  Similarity=0.234  Sum_probs=59.3

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus        69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  129 (130)
T PRK06549         69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI  129 (130)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence            479999999999999999999999999999999999999999999999999 9999999987

>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS)

Probab=99.29  E-value=7e-12  Score=103.97  Aligned_cols=72  Identities=38%  Similarity=0.652  Sum_probs=68.9

Q ss_pred             eecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       215 ~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      +.+|+++..+.+|.+.+|++++||.|++||+|+++|++|+.++|.||.+|+|.+++++.|+. +..|++|+.|
T Consensus         2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~~-v~~g~~l~~i   73 (73)
T cd06663           2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGTK-VEGDTPLVKI   73 (73)
T ss_pred             cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEC
Confidence            56899999999999999999999999999999999999999999999999999999999998 9999999874

These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.

>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]

Probab=99.29  E-value=8.3e-12  Score=116.86  Aligned_cols=70  Identities=27%  Similarity=0.433  Sum_probs=63.2

Q ss_pred             ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      ...+.-|..      |++.+.+|++||.|++||+||+||.+|+.++|+||.+|+|.+|++++|+. |..|++|+.|.
T Consensus        70 ~~~V~SPm~------Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~~-Ve~G~~L~~I~  139 (140)
T COG0511          70 GTQVTSPMV------GTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGDP-VEYGDPLAVIE  139 (140)
T ss_pred             CceEecCcc------eEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCCc-cCCCCEEEEec
Confidence            344555543      67888999999999999999999999999999999999999999999999 99999999984

>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.27  E-value=1.3e-11  Score=113.32  Aligned_cols=61  Identities=25%  Similarity=0.252  Sum_probs=59.7

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .|+|.+|++++||.|++||+|++||+||+..+|.||.+|+|.++++++||. |..|++|+.|
T Consensus        69 ~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  129 (130)
T PRK06549         69 PGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQV-VNPGDGLITI  129 (130)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999 9999999987

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.24  E-value=6.1e-11  Score=119.14  Aligned_cols=57  Identities=33%  Similarity=0.487  Sum_probs=55.4

Q ss_pred             eeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       231 ~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|++||.|++||+|++||+||+.++|+++.+|+|.+|++++|+. |.+|++|+.|.
T Consensus       217 ~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE  273 (274)
T PLN02983        217 PPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE  273 (274)
T ss_pred             cceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence            5999999999999999999999999999999999999999999999 99999999983

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.22  E-value=3.2e-11  Score=114.08  Aligned_cols=61  Identities=33%  Similarity=0.514  Sum_probs=59.6

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .|+|.+|++++||.|++||.|+++|+||+..+|.||.+|+|.++++++||. |..|++|+.|
T Consensus        92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I  152 (153)
T PRK05641         92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL  152 (153)
T ss_pred             CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999 9999999987

>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.21  E-value=1.2e-10  Score=110.26  Aligned_cols=61  Identities=31%  Similarity=0.473  Sum_probs=59.1

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|.+|++++||.|++||+|+++|+||+.++|.|+.+|+|.++++++|+. |..|++|+.|
T Consensus        92 ~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd~-V~~Gq~L~~I  152 (153)
T PRK05641         92 PGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGDT-VDTGQPLIEL  152 (153)
T ss_pred             CeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCCE-ECCCCEEEEe
Confidence            368999999999999999999999999999999999999999999999999 9999999987

>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.21  E-value=2.7e-11  Score=99.84  Aligned_cols=62  Identities=27%  Similarity=0.316  Sum_probs=59.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|.|.+|++++||+|++||+|+++|++|+.+++.++.+|+|.++++++|+. |..|++|+.|.
T Consensus         9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~~-V~~g~~l~~ie   70 (70)
T PRK08225          9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGDF-VNEGDVLLEIE   70 (70)
T ss_pred             CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCCE-ECCCCEEEEEC
Confidence            489999999999999999999999999999999999999999999999999 99999999873

>PRK07051 hypothetical protein; Validated

Probab=99.19  E-value=6.4e-11  Score=100.30  Aligned_cols=61  Identities=30%  Similarity=0.379  Sum_probs=58.6

Q ss_pred             EEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       101 g~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      |++.+       |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+. |..|++|+.|+
T Consensus        12 g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~   79 (80)
T PRK07051         12 GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE   79 (80)
T ss_pred             eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            66777       999999999999999999999999999999999999999999999 99999999985

>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit

Probab=99.17  E-value=1.6e-11  Score=88.79  Aligned_cols=38  Identities=45%  Similarity=0.630  Sum_probs=33.6

Q ss_pred             CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHH
Q 006594          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLA  365 (639)
Q Consensus       328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~  365 (639)
                      .+.+||+||++|+|+|||+++|+|||++|||+++||++
T Consensus         2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a   39 (39)
T PF02817_consen    2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA   39 (39)
T ss_dssp             SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred             CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence            35689999999999999999999999999999999985

Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=99.16  E-value=1.4e-10  Score=93.74  Aligned_cols=62  Identities=35%  Similarity=0.498  Sum_probs=59.5

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .+|+|.+|++++||.|++||+|++||++|+..+|+||.+|+|.++++.+|+. |..|++|+.|
T Consensus         6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i   67 (67)
T cd06850           6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI   67 (67)
T ss_pred             ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            4699999999999999999999999999999999999999999999999999 9999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]

Probab=99.15  E-value=4e-11  Score=122.87  Aligned_cols=80  Identities=23%  Similarity=0.427  Sum_probs=75.8

Q ss_pred             CCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       210 ~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .....+.+-++|+++.|+++.+|+|||||+|+..|.||||++||++++|++.++|+|++|+...++. ..||++|..+.-
T Consensus        62 ~gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~ddi-a~VGk~Lvd~ev  140 (474)
T KOG0558|consen   62 SGVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDDI-AKVGKPLVDLEV  140 (474)
T ss_pred             cceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchhh-hHhCcceeeeee
Confidence            3468899999999999999999999999999999999999999999999999999999999999999 999999998864


Q ss_pred             C
Q 006594          290 D  290 (639)
Q Consensus       290 ~  290 (639)
                      +
T Consensus       141 e  141 (474)
T KOG0558|consen  141 E  141 (474)
T ss_pred             c
Confidence            3

>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase

Probab=99.15  E-value=7.3e-11  Score=118.60  Aligned_cols=62  Identities=31%  Similarity=0.489  Sum_probs=59.2

Q ss_pred             eEEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|++.+       |+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++||. |.+|++|+.|+
T Consensus       205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD~-V~vGqpL~~IE  273 (274)
T PLN02983        205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGKP-VSVDTPLFVIE  273 (274)
T ss_pred             CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCCE-eCCCCEEEEec
Confidence            477777       999999999999999999999999999999999999999999999 99999999984

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.15  E-value=8.2e-11  Score=112.09  Aligned_cols=61  Identities=33%  Similarity=0.496  Sum_probs=58.3

Q ss_pred             EEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       101 g~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      |++..       |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|+
T Consensus        89 G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i~  156 (156)
T TIGR00531        89 GTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVIE  156 (156)
T ss_pred             EEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEEC
Confidence            77765       999999999999999999999999999999999999999999999 99999999873

The gene name is accB or fabE.

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=99.09  E-value=2.2e-10  Score=109.08  Aligned_cols=61  Identities=33%  Similarity=0.506  Sum_probs=57.9

Q ss_pred             EEEEE-------EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          101 GNIAK-------WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       101 g~v~~-------w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      |++..       |+|++||.|++||+||.||+||+..+|+|+.+|+|.+++++.|+. |..|++|+.|+
T Consensus        88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i~  155 (155)
T PRK06302         88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVIE  155 (155)
T ss_pred             EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEeC
Confidence            66665       999999999999999999999999999999999999999999999 99999999873

>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein

Probab=99.07  E-value=4.9e-10  Score=106.79  Aligned_cols=74  Identities=27%  Similarity=0.400  Sum_probs=64.2

Q ss_pred             eeeecCCCCCcccc-cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       213 ~~~~~P~l~~~~~~-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      ..+.-|..|-.... ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.+|+++.|+. |..|++|+.|
T Consensus        81 ~~v~sp~~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~~-V~~Gq~L~~i  155 (156)
T TIGR00531        81 HFVRSPMVGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQP-VEYGQPLIVI  155 (156)
T ss_pred             CEEeCCCCEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCCE-ECCCCEEEEE
Confidence            45667766644321 33456999999999999999999999999999999999999999999999 9999999987

The gene name is accB or fabE.

>PRK07051 hypothetical protein; Validated

Probab=99.06  E-value=4.5e-10  Score=95.08  Aligned_cols=75  Identities=25%  Similarity=0.245  Sum_probs=64.4

Q ss_pred             eeeecCCCCCccc-ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          213 VVLEMPALSPTMN-QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       213 ~~~~~P~l~~~~~-~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      +++..|..|.... ......|++++||.|++||+|+++|++|+.++|.||.+|+|.++++++|+. |..|++|+.+.
T Consensus         4 ~~~~ap~~g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~~-V~~G~~l~~i~   79 (80)
T PRK07051          4 HEIVSPLPGTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGEP-VEAGQVLARIE   79 (80)
T ss_pred             cEEeCCCceEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEe
Confidence            4566666664433 233446999999999999999999999999999999999999999999999 99999999984

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=99.03  E-value=2e-09  Score=87.13  Aligned_cols=73  Identities=56%  Similarity=0.878  Sum_probs=70.1

Q ss_pred             EEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594           88 VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus        88 ~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .+.+|+++.+..+|+|.+|+++.|+.|..|++++.++++|+...+.++.+|++.+.++..|+. +..|++|+.|
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence            478999999999999999999999999999999999999999999999999999999999999 9999999874

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=99.02  E-value=6.2e-10  Score=126.25  Aligned_cols=63  Identities=29%  Similarity=0.413  Sum_probs=61.1

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      .|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+. |.+|++|+.|++
T Consensus       533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~~  595 (596)
T PRK14042        533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVEV  595 (596)
T ss_pred             ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEeC
Confidence            599999999999999999999999999999999999999999999999999 999999999964

>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated

Probab=98.97  E-value=1.8e-09  Score=102.82  Aligned_cols=74  Identities=27%  Similarity=0.390  Sum_probs=65.4

Q ss_pred             eeeecCCCCCcccc-cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          213 VVLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       213 ~~~~~P~l~~~~~~-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      ..+.-|..|-.... ..-..|+|++||.|++||+||.||+||+.++|+|+.+|+|.+++++.|+. |..|++|+.|
T Consensus        80 ~~v~sp~~G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~~-V~~Gq~L~~i  154 (155)
T PRK06302         80 HVVTSPMVGTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQP-VEFGQPLFVI  154 (155)
T ss_pred             CEEeCCcCEEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCCE-eCCCCEEEEe
Confidence            46777877755432 34456999999999999999999999999999999999999999999999 9999999987

>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase

Probab=98.95  E-value=1.6e-09  Score=87.51  Aligned_cols=61  Identities=31%  Similarity=0.474  Sum_probs=58.5

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|.+.+|++++||.|++||+|++++++|...+|.||.+|+|.+++++.|+. |..|++|+.|
T Consensus         7 ~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-V~~G~~l~~i   67 (67)
T cd06850           7 PGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGDQ-VEAGQLLVVI   67 (67)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCCE-ECCCCEEEEC
Confidence            588999999999999999999999999999999999999999999999999 9999999875

This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.

>TIGR02712 urea_carbox urea carboxylase

Probab=98.92  E-value=1.9e-09  Score=131.91  Aligned_cols=62  Identities=29%  Similarity=0.374  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|++|+|++||.|++||+||+||+||++++|+||.+|+|+++++++||. |.+||+|+.|+
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence            599999999999999999999999999999999999999999999999999 99999999884

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=98.90  E-value=1.1e-08  Score=116.23  Aligned_cols=62  Identities=29%  Similarity=0.440  Sum_probs=60.3

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+. |.+|++|+.|.
T Consensus       533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd~-V~~G~~L~~I~  594 (596)
T PRK14042        533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGDK-VTPGQVLIRVE  594 (596)
T ss_pred             ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcCE-ECCCCEEEEEe
Confidence            489999999999999999999999999999999999999999999999999 99999999985

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.83  E-value=5.2e-09  Score=119.08  Aligned_cols=58  Identities=33%  Similarity=0.512  Sum_probs=56.5

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI  158 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l  158 (639)
                      .|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++||. |.+|++|
T Consensus       525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l  582 (582)
T TIGR01108       525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL  582 (582)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence            599999999999999999999999999999999999999999999999999 9999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.83  E-value=7.6e-09  Score=117.91  Aligned_cols=61  Identities=33%  Similarity=0.450  Sum_probs=59.8

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .|+|++|+|++||.|++||+||+||+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus       532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  592 (593)
T PRK14040        532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL  592 (593)
T ss_pred             cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999 9999999987

>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases

Probab=98.80  E-value=1.8e-08  Score=81.40  Aligned_cols=73  Identities=51%  Similarity=0.807  Sum_probs=69.5

Q ss_pred             eeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       214 ~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .+.+|+++....+|.|..|+++.|+.|..|++++.+++.|...++.++.+|++.+.++.+|+. +..|++|+.+
T Consensus         2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~~-v~~g~~l~~~   74 (74)
T cd06849           2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGDT-VPVGQVIAVI   74 (74)
T ss_pred             EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcCE-eCCCCEEEEC
Confidence            477899999999999999999999999999999999999999999999999999999999999 9999999864

2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.79  E-value=2.4e-08  Score=121.36  Aligned_cols=61  Identities=16%  Similarity=0.356  Sum_probs=59.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|
T Consensus      1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i 1142 (1143)
T TIGR01235      1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVL 1142 (1143)
T ss_pred             CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            389999999999999999999999999999999999999999999999999 9999999987

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=98.78  E-value=1e-08  Score=124.46  Aligned_cols=62  Identities=19%  Similarity=0.359  Sum_probs=60.2

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|+++++++|+. |.+|++|+.|+
T Consensus      1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1143 (1143)
T TIGR01235      1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGEQ-IDAKDLLLVLE 1143 (1143)
T ss_pred             CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCCE-ECCCCEEEEeC
Confidence            499999999999999999999999999999999999999999999999999 99999999883

This enzyme plays a role in gluconeogensis but not glycolysis.

>TIGR02712 urea_carbox urea carboxylase

Probab=98.70  E-value=1.8e-08  Score=123.53  Aligned_cols=62  Identities=27%  Similarity=0.390  Sum_probs=59.9

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+. |.+|++|+.|+
T Consensus      1140 ~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~~-V~~G~~l~~i~ 1201 (1201)
T TIGR02712      1140 AGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGDM-VDAGDIVAVLE 1201 (1201)
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCCE-eCCCCEEEEeC
Confidence            489999999999999999999999999999999999999999999999999 99999999873

Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.69  E-value=3.6e-08  Score=112.64  Aligned_cols=62  Identities=32%  Similarity=0.486  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|+++++++|+. |..|++|+.|+
T Consensus       530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence            589999999999999999999999999999999999999999999999999 99999999984

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=98.64  E-value=2.6e-08  Score=113.53  Aligned_cols=58  Identities=31%  Similarity=0.492  Sum_probs=56.1

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPI  284 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l  284 (639)
                      .|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+. |.+|++|
T Consensus       525 ~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd~-V~~G~~l  582 (582)
T TIGR01108       525 AGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGDA-VSVGQVL  582 (582)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCCC
Confidence            489999999999999999999999999999999999999999999999999 9999975

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=98.60  E-value=5.4e-08  Score=111.01  Aligned_cols=61  Identities=33%  Similarity=0.436  Sum_probs=59.2

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |..|++|+.|
T Consensus       532 ~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd~-V~~G~~L~~I  592 (593)
T PRK14040        532 AGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGDA-VAVGDTLLTL  592 (593)
T ss_pred             cEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEe
Confidence            378999999999999999999999999999999999999999999999999 9999999987

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.57  E-value=1.1e-07  Score=115.93  Aligned_cols=62  Identities=27%  Similarity=0.423  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|++|+|++||.|++||+|+.+|+|||..+|.||.+|+|+++++++|+. |..|+.|+.|+
T Consensus      1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999       1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred             eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence            499999999999999999999999999999999999999999999999999 99999999985

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.54  E-value=1.3e-07  Score=103.61  Aligned_cols=62  Identities=29%  Similarity=0.471  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|+.+.|++|++|.+||+|+.+|.|||+..|+++.+|+|+++.+.+||. |..|++|+.++
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence            599999999999999999999999999999999999999999999999999 99999999985

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=98.42  E-value=3.1e-07  Score=105.11  Aligned_cols=62  Identities=29%  Similarity=0.468  Sum_probs=59.8

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|.+|++++||.|++||+|+++|++|+..+|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus       530 ~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i~  591 (592)
T PRK09282        530 PGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGDR-VNPGDVLMEIE  591 (592)
T ss_pred             cEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCCE-eCCCCEEEEec
Confidence            478999999999999999999999999999999999999999999999999 99999999984

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.41  E-value=3.7e-07  Score=102.93  Aligned_cols=67  Identities=25%  Similarity=0.481  Sum_probs=61.8

Q ss_pred             CCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594           94 LSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus        94 ~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      +|-.|. |.|+++.|++||.|++||+|+.+|.|||+..|.+|++|+|++++|.+||. |..|+.|..++
T Consensus      1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038        1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred             cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence            344443 89999999999999999999999999999999999999999999999999 99999998874

>PRK12999 pyruvate carboxylase; Reviewed

Probab=98.29  E-value=8.4e-07  Score=108.48  Aligned_cols=61  Identities=23%  Similarity=0.396  Sum_probs=59.6

Q ss_pred             cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      |+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+. |..|++|+.|.
T Consensus      1085 G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~~-V~~g~~l~~i~ 1145 (1146)
T PRK12999       1085 GSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGDQ-VEAGDLLVELE 1145 (1146)
T ss_pred             EEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCCE-ECCCCEEEEEc
Confidence            89999999999999999999999999999999999999999999999999 99999999984

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=98.28  E-value=2.8e-06  Score=96.09  Aligned_cols=149  Identities=18%  Similarity=0.252  Sum_probs=100.5

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCee-ecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKI-EIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V-~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      ....+.-|.+--+|.+|+-+++..+.|-+. -+-+.|.+.. +|-...|.-..+|-..++.+++-..    +....... 
T Consensus       999 d~S~L~t~~ff~gm~~gEe~~v~ie~GktLii~l~aige~d-~~G~r~v~felNGq~R~i~v~Drs~----~~~~~~r~- 1072 (1149)
T COG1038         999 DVSVLPTPTFFYGLRPGEEIEVEIEKGKTLIIKLQAIGEPD-EKGMRTVYFELNGQPREIKVKDRSV----GSSVVARR- 1072 (1149)
T ss_pred             CccccCcchhhccCCCCceEEEEecCCcEEEEEecccCCCC-cCCcEEEEEEeCCceeeeeeccccc----cccccccc-
Confidence            445667788888889888888877776432 1222222322 4455555556666666666554432    00000000 


Q ss_pred             CCcccccccccccCCcccccccccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccC
Q 006594          164 DADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVG  243 (639)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~g  243 (639)
                                                      ++        ...-|.|+--.|        .|.|++..|++||.|++|
T Consensus      1073 --------------------------------KA--------d~~Np~higApm--------pG~Vv~v~V~~G~~Vk~G 1104 (1149)
T COG1038        1073 --------------------------------KA--------DPGNPGHIGAPM--------PGVVVEVKVKKGDKVKKG 1104 (1149)
T ss_pred             --------------------------------cc--------CCCCccccCCCC--------CCceEEEEEccCCeecCC
Confidence                                            00        001112221122        389999999999999999


Q ss_pred             CeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          244 DVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       244 d~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      |+|+.+|.+|+...|.+|.+|+|.+++|+.|+. |..|+.|..+.
T Consensus      1105 d~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd~-i~~gDLLi~~~ 1148 (1149)
T COG1038        1105 DVLAVIEAMKMETTISAPFDGTVKEVLVKDGDQ-IDGGDLLVVVE 1148 (1149)
T ss_pred             CeeeehhhhhhceeeecCCCceEeEEEecCCCc-cccCceEEEcc
Confidence            999999999999999999999999999999999 99999998774

>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]

Probab=98.25  E-value=1.2e-06  Score=96.36  Aligned_cols=62  Identities=26%  Similarity=0.431  Sum_probs=59.9

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|+.+.|++|+.|.+||+|+.+|.+|+...|.++.+|+|+++.+.+|+. |..|++|+.+.
T Consensus       583 pG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd~-V~~g~vLve~~  644 (645)
T COG4770         583 PGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGDQ-VAVGTVLVEFE  644 (645)
T ss_pred             CceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCCc-cccCceEEEec
Confidence            389999999999999999999999999999999999999999999999999 99999999884

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=98.18  E-value=2.4e-06  Score=94.71  Aligned_cols=62  Identities=27%  Similarity=0.365  Sum_probs=60.0

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|+++.|++|++|++||+||.+..|||++-|.||.+|+++++++..|+. +..|+.|+.|+
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence            399999999999999999999999999999999999999999999999999 99999999885

>cd06848 GCS_H Glycine cleavage H-protein

Probab=98.12  E-value=4.1e-06  Score=73.40  Aligned_cols=63  Identities=19%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             eEEecCCCCCCCceEEEEE-EEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594           87 TVVGMPALSPTMSQGNIAK-WRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~-w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      ..+-|=+.+..+ =|+|.. |++++|+.|++||.||+||++|+..+|.||.+|+|.++..+.++.
T Consensus        16 ~~lGlt~~~~~~-lG~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          16 ATVGITDYAQDL-LGDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             EEEeeCHHHHhh-CCCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            445555554443 377777 777779999999999999999999999999999999998888776

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>cd06848 GCS_H Glycine cleavage H-protein

Probab=97.94  E-value=1.1e-05  Score=70.67  Aligned_cols=50  Identities=18%  Similarity=0.199  Sum_probs=45.5

Q ss_pred             cccce-eecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594          227 GNIAK-WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK  276 (639)
Q Consensus       227 g~i~~-w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~  276 (639)
                      |+|.. |++++|+.|++||.|++||++|++.+|.||.+|+|.++..+.++.
T Consensus        29 G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~~   79 (96)
T cd06848          29 GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLDN   79 (96)
T ss_pred             CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhcC
Confidence            77777 777789999999999999999999999999999999998777765

Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.81  E-value=2.5e-05  Score=70.07  Aligned_cols=63  Identities=19%  Similarity=0.283  Sum_probs=46.6

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      ..|-|=+.+.. .=|+|+.... ++|++|++||++++||++|+..+|.||.+|+|.++.-+..+.
T Consensus        17 ~~vGiT~~aq~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~~   80 (110)
T TIGR03077        17 VRLGLTSRMQE-NLGNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALEDD   80 (110)
T ss_pred             EEEeeCHHHHH-hcCCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhhC
Confidence            34444444333 2245555444 669999999999999999999999999999999996655543

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=97.79  E-value=2.6e-05  Score=86.74  Aligned_cols=62  Identities=21%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|++++|++|+.|++||+||.+..+|+.+-|.||.+|+|+++.+..|+. +.-|+.+++++
T Consensus      1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~~-~~g~DL~~~~E 1175 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGTK-VEGGDLIVELE 1175 (1176)
T ss_pred             CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCCc-ccccceEEEcc
Confidence            389999999999999999999999999999999999999999999999999 99999998874

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.76  E-value=2.1e-05  Score=85.35  Aligned_cols=61  Identities=23%  Similarity=0.261  Sum_probs=58.6

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      |.|.+++||+||.|.+||.||.++.|||...+.+|.+|+|+.+.++.|+. |.-|.+|..++
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~~  670 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEFE  670 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEeC
Confidence            68899999999999999999999999999999999999999999999999 99999998863

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.71  E-value=6.5e-05  Score=67.80  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=44.5

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~  146 (639)
                      ..|-|=+.+.. .=|+|+.... ++|+.|++||+||+||++|+..+|.||.+|+|.++.-.
T Consensus        19 ~~vGiT~~a~~-~lG~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~~   78 (114)
T PRK00624         19 VRLGLTSKMQE-NLGNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNTA   78 (114)
T ss_pred             EEEeeCHHHHH-hcCCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHHH
Confidence            44445444443 2255555544 56999999999999999999999999999999998433

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=97.68  E-value=6.2e-05  Score=89.77  Aligned_cols=68  Identities=24%  Similarity=0.403  Sum_probs=63.3

Q ss_pred             CceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCcc
Q 006594           98 MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD  167 (639)
Q Consensus        98 ~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~  167 (639)
                      -+-|++++|+|+.|+.|+.||+-+|||.|||.+.+.+..+|+| ++..++|+. +..|++|+.+..+..+
T Consensus       691 Ps~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDdpS  758 (2196)
T KOG0368|consen  691 PSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDDPS  758 (2196)
T ss_pred             CCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCChh
Confidence            3579999999999999999999999999999999999999988 899999999 9999999999876543

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.60  E-value=7.5e-05  Score=70.26  Aligned_cols=63  Identities=22%  Similarity=0.275  Sum_probs=52.4

Q ss_pred             eEEecCCCCCCCceEEEEEEEec-CCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKK-EGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~-~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      ..|-|=++...+ =|+|+.+.+. +|++|++||+++.||++|+..+|.||.+|+|.++.....+.
T Consensus        31 ~~vGitd~aq~~-lG~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~   94 (144)
T PRK13380         31 VTVGITDYAQTM-AGDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDS   94 (144)
T ss_pred             EEEecCHHHHHh-cCCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhC
Confidence            455566655543 3788888886 89999999999999999999999999999999998876553

>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial

Probab=97.57  E-value=6.1e-05  Score=67.55  Aligned_cols=49  Identities=20%  Similarity=0.291  Sum_probs=40.8

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~  275 (639)
                      |.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.+++-+..+
T Consensus        30 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~~   79 (110)
T TIGR03077        30 GNILHIDLPSVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALED   79 (110)
T ss_pred             CCEEEEECCCCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhhh
Confidence            44544433 66999999999999999999999999999999999655544

The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.54  E-value=0.00027  Score=78.07  Aligned_cols=67  Identities=16%  Similarity=0.228  Sum_probs=58.8

Q ss_pred             ceEEEEEEE-ecCCCeeecCCeEEEEEcc------------------------------------------------cce
Q 006594           99 SQGNIAKWR-KKEGDKIEIGDILCEIETD------------------------------------------------KAT  129 (639)
Q Consensus        99 ~eg~v~~w~-v~~Gd~V~~g~~l~~ietd------------------------------------------------K~~  129 (639)
                      ..|.|.+++ +++||.|++||+|++|++.                                                ...
T Consensus       130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~  209 (409)
T PRK09783        130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR  209 (409)
T ss_pred             cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence            469999998 9999999999999999842                                                013


Q ss_pred             eEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (639)
Q Consensus       130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~  166 (639)
                      ..|.||++|+|.++.+.+|+. |..|++|+.|.+.+.
T Consensus       210 ~~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~~  245 (409)
T PRK09783        210 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMDP  245 (409)
T ss_pred             EEEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCCe
Confidence            579999999999999999999 999999999977654

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.52  E-value=0.00023  Score=76.06  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ..|.||++|+|..+.+..|+. |..|++|+.|.+.+
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCC
Confidence            468999999999999999999 99999999997654

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=97.49  E-value=0.00025  Score=75.43  Aligned_cols=66  Identities=15%  Similarity=0.295  Sum_probs=57.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+++|++||.|++||+|+++++...                                                  
T Consensus        54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~  133 (310)
T PRK10559         54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT  133 (310)
T ss_pred             CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            569999999999999999999999987310                                                  


Q ss_pred             --------------------eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          129 --------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       129 --------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                                          ...|.||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus       134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~~  189 (310)
T PRK10559        134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQN  189 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeCC
Confidence                                1358899999999999999999 99999999997543

>PRK01202 glycine cleavage system protein H; Provisional

Probab=97.47  E-value=0.00029  Score=65.03  Aligned_cols=63  Identities=19%  Similarity=0.241  Sum_probs=49.1

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEE---EecCCCcccc---CCC-cEEEEecC
Q 006594          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAITVED  164 (639)
Q Consensus       101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~---~v~~g~~~v~---~G~-~l~~i~~~  164 (639)
                      |+|..+. .++|++|++||+++.||++|+..+|.||.+|+|.++   +....+. +.   -|+ -|+.|...
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl~~v~~~  107 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWLFKIKPS  107 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceEEEEEeC
Confidence            4444443 256999999999999999999999999999999999   5544455 54   454 78888644

>PRK00624 glycine cleavage system protein H; Provisional

Probab=97.44  E-value=0.00013  Score=65.79  Aligned_cols=45  Identities=22%  Similarity=0.322  Sum_probs=38.5

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.|+-... ++|+.|++||++++||++|+..+|.||.+|+|.++.-
T Consensus        32 G~i~~v~lp~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN~   77 (114)
T PRK00624         32 GNILHIDLPSVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVNT   77 (114)
T ss_pred             CCEEEEECCCCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEHH
Confidence            45555443 6699999999999999999999999999999999853

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=97.38  E-value=0.0003  Score=74.33  Aligned_cols=66  Identities=29%  Similarity=0.464  Sum_probs=57.8

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.++++++||.|++||+|+.+++.-.                                                  
T Consensus        33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~  112 (322)
T TIGR01730        33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE  112 (322)
T ss_pred             ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            459999999999999999999999975311                                                  


Q ss_pred             ---------------------eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       129 ---------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                                           ...|+||++|+|..+.+..|+. |..|++|+.|.+.+
T Consensus       113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~  169 (322)
T TIGR01730       113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDLD  169 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcCC
Confidence                                 2369999999999999999999 99999999997654

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK12784 hypothetical protein; Provisional

Probab=97.38  E-value=0.0009  Score=54.98  Aligned_cols=65  Identities=12%  Similarity=0.081  Sum_probs=59.0

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcc-cceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETD-KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietd-K~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      -.|+|-+.++.+++.|-+++.|+-|+++ +.-..|.--.+|.|.-+.|++||. |..+..|++++++
T Consensus        12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD   77 (84)
T PRK12784         12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD   77 (84)
T ss_pred             cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence            4699999999999999999999999984 555668889999999999999999 9999999999754

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=97.36  E-value=0.00045  Score=74.46  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             EEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       131 ~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .|+||++|+|.++.++.|+. |..|++|+.|.+.+
T Consensus       210 ~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~  243 (346)
T PRK10476        210 TVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTD  243 (346)
T ss_pred             EEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCC
Confidence            58899999999999999999 99999999997654

>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.29  E-value=0.00019  Score=78.14  Aligned_cols=60  Identities=20%  Similarity=0.269  Sum_probs=57.8

Q ss_pred             cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      |.|.+.+|++||.|.+||.|+.++.+|+..-+.+|.+|+|+.+.+++|+. |.-|.+|..+
T Consensus       610 G~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~~-v~~g~vlv~~  669 (670)
T KOG0238|consen  610 GIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGAT-VGDGAVLVEF  669 (670)
T ss_pred             CeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCcc-cCCCceEEEe
Confidence            58899999999999999999999999999999999999999999999999 9999999876

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=97.20  E-value=0.00044  Score=53.05  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ++.|.++.+|+|.+++|.+|+. |+.|++|+.|+..+
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~~~   37 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDSPD   37 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECcHH
Confidence            4678999999999999999999 99999999996543

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=97.20  E-value=0.00077  Score=73.78  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=58.9

Q ss_pred             CCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------
Q 006594           93 ALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------  128 (639)
Q Consensus        93 ~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------  128 (639)
                      +++.- ..|+|.++++++||.|++||+|+.|++...                                            
T Consensus        65 ~l~~~-v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~  143 (385)
T PRK09578         65 EVRAR-VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTE  143 (385)
T ss_pred             EEecc-CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            34443 469999999999999999999999986311                                            


Q ss_pred             ---------------------------eeEEecCCceEEEEEEecCCCccccCC--CcEEEEecCCc
Q 006594          129 ---------------------------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD  166 (639)
Q Consensus       129 ---------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G--~~l~~i~~~~~  166 (639)
                                                 ...|.||++|+|.+.++++|+. |..|  ++|+.|...+.
T Consensus       144 ~~~~~~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~~~  209 (385)
T PRK09578        144 AVADERQAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQLDP  209 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEecCc
Confidence                                       1368999999999999999999 9885  58999876543

>PRK13380 glycine cleavage system protein H; Provisional

Probab=97.18  E-value=0.00041  Score=65.29  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=44.2

Q ss_pred             cccceeecC-CCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594          227 GNIAKWRKN-EGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK  276 (639)
Q Consensus       227 g~i~~w~v~-~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~  276 (639)
                      |.|+.+.++ +|+.|++||+++.||++|+..+|.||.+|+|.++..+.-+.
T Consensus        44 G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l~~~   94 (144)
T PRK13380         44 GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEALEDS   94 (144)
T ss_pred             CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhhhhC
Confidence            778887775 89999999999999999999999999999999997655543

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=97.17  E-value=0.00085  Score=73.67  Aligned_cols=35  Identities=17%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ..|.||++|+|..+.++.|+. |..|++|+.|.+.+
T Consensus       216 t~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~  250 (390)
T PRK15136        216 TKIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPAT  250 (390)
T ss_pred             CEEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCC
Confidence            369999999999999999999 99999999997554

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=97.12  E-value=0.00095  Score=71.50  Aligned_cols=35  Identities=14%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ..|.||++|+|..+.+..|+. |..|++|+.|.+.+
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~~  238 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLTR  238 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecCC
Confidence            468999999999999999999 99999999996543

>TIGR00527 gcvH glycine cleavage system H protein

Probab=97.04  E-value=0.00076  Score=62.22  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=40.7

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC
Q 006594          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS  149 (639)
Q Consensus       101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~  149 (639)
                      |+|..+. .++|++|++||++|.||++|+..+|.||.+|+|.++.-..-+
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   85 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED   85 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence            4554443 357999999999999999999999999999999988765544

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional

Probab=97.04  E-value=0.0013  Score=72.64  Aligned_cols=65  Identities=17%  Similarity=0.224  Sum_probs=56.7

Q ss_pred             ccccceee-cCCCCccccCCeeeEeecCc------------------------------------------------cee
Q 006594          226 QGNIAKWR-KNEGDKIEVGDVICEIETDK------------------------------------------------ATL  256 (639)
Q Consensus       226 ~g~i~~w~-v~~Gd~V~~gd~l~~vetdK------------------------------------------------~~~  256 (639)
                      .|.|.+++ +++||.|++||+|++|++..                                                ..+
T Consensus       131 ~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~~  210 (409)
T PRK09783        131 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTRF  210 (409)
T ss_pred             CEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCcE
Confidence            48899998 99999999999999998320                                                135


Q ss_pred             eEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .|.||++|+|.++.+.+|+. |..|++|+.|.+..
T Consensus       211 ~I~AP~dGvV~~~~v~~G~~-V~~g~~L~~I~d~~  244 (409)
T PRK09783        211 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMD  244 (409)
T ss_pred             EEECCCCeEEEEEECCCCCE-ECCCCeEEEEEcCC
Confidence            79999999999999999999 99999999997543

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=97.00  E-value=0.0011  Score=70.71  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=31.8

Q ss_pred             eeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       256 ~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      ..|.||++|+|..+.+.+|+. |..|++|+.|.+..
T Consensus       205 ~~I~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~~  239 (334)
T TIGR00998       205 TVIRAPFDGYVARRFVQVGQV-VSPGQPLMAVVPAE  239 (334)
T ss_pred             cEEEcCCCcEEEEEecCCCCE-eCCCCeeEEEEcCC
Confidence            369999999999999999999 99999999997543

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=96.99  E-value=0.0017  Score=71.36  Aligned_cols=67  Identities=31%  Similarity=0.310  Sum_probs=56.0

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.++++++||.|++||+|++|+....                                                  
T Consensus        72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~  151 (397)
T PRK15030         72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  151 (397)
T ss_pred             CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence            459999999999999999999999985310                                                  


Q ss_pred             ---------------------eeEEecCCceEEEEEEecCCCccccCCCc--EEEEecCCc
Q 006594          129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP--IAITVEDAD  166 (639)
Q Consensus       129 ---------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~--l~~i~~~~~  166 (639)
                                           ...|.||++|+|.+++++.|+. |..|++  |+.|.+.+.
T Consensus       152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~~  211 (397)
T PRK15030        152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP  211 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEecCc
Confidence                                 1247899999999999999999 999985  777765543

>PRK01202 glycine cleavage system protein H; Provisional

Probab=96.97  E-value=0.0012  Score=60.86  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=45.5

Q ss_pred             cccceee-cCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecC---CCCcccc---CCC-eEEEEe
Q 006594          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP---EGSKDVA---VGQ-PIAITV  288 (639)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~---~G~~~v~---vG~-~l~~i~  288 (639)
                      |+|..+. .++|+.|++||+++.||++|+..+|.||.+|+|.++..+   ..+. +.   -|+ -|+.|.
T Consensus        37 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~~p~~-ln~~p~~~gWl~~v~  105 (127)
T PRK01202         37 GDIVFVELPEVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVNEALEDSPEL-VNEDPYGEGWLFKIK  105 (127)
T ss_pred             CCeeEEEcCCCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEhHHhhhCcHh-hcCCCCCCceEEEEE
Confidence            4454443 367999999999999999999999999999999999443   3333 33   333 566664

>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]

Probab=96.97  E-value=0.0011  Score=79.53  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=59.5

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .|++++|+|+.|+.|..||+-+|||.+|+.|.+.++.+|.| ....++|+. +..|++|+.+.-+.
T Consensus       693 ~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i-~~i~~~G~~-i~aG~vlakL~lDd  756 (2196)
T KOG0368|consen  693 PGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRI-QLIKQEGDA-IEAGSVLAKLTLDD  756 (2196)
T ss_pred             CccceEEEecCCCceecCCeeeehehhheeeeeeccCCceE-EEecCCCCc-cCccceeEEeecCC
Confidence            58999999999999999999999999999999999999998 556899999 99999999997544

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=96.96  E-value=0.0018  Score=70.99  Aligned_cols=66  Identities=27%  Similarity=0.274  Sum_probs=56.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEccc---------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDK---------------------------------------------------  127 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK---------------------------------------------------  127 (639)
                      ..|.|.++++++||.|++||+|++|+...                                                   
T Consensus        68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~  147 (385)
T PRK09859         68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN  147 (385)
T ss_pred             CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            46999999999999999999999998531                                                   


Q ss_pred             --------------------ceeEEecCCceEEEEEEecCCCccccCCC--cEEEEecCC
Q 006594          128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVEDA  165 (639)
Q Consensus       128 --------------------~~~~i~s~~~G~i~~~~v~~g~~~v~~G~--~l~~i~~~~  165 (639)
                                          ....|.||++|+|.+.+++.|+. |..|+  +|+.|.+.+
T Consensus       148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~~  206 (385)
T PRK09859        148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRLD  206 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEecC
Confidence                                01368999999999999999999 99985  688886544

>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional

Probab=96.89  E-value=0.0017  Score=69.04  Aligned_cols=64  Identities=14%  Similarity=0.289  Sum_probs=56.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.+++|++||.|++||+|++++....                                                   
T Consensus        55 ~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~a  134 (310)
T PRK10559         55 SGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQTV  134 (310)
T ss_pred             ceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999987321                                                   


Q ss_pred             -------------------eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          255 -------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       255 -------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                                         ...|.||++|+|.++.+++|+. |..|++|+.|.+.
T Consensus       135 ~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~~-V~~g~~l~~Iv~~  188 (310)
T PRK10559        135 LHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGEF-ITRGSTAVALVKQ  188 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCCE-ecCCCeeEEEEeC
Confidence                               1359999999999999999999 9999999998754

>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit

Probab=96.83  E-value=0.0013  Score=69.41  Aligned_cols=64  Identities=28%  Similarity=0.447  Sum_probs=56.3

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|+.+++.-.                                                   
T Consensus        34 ~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~  113 (322)
T TIGR01730        34 AGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEA  113 (322)
T ss_pred             cEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            48899999999999999999999976321                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                                          ...|.||.+|+|..+.+..|+. +..|++|+.|...
T Consensus       114 ~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~  168 (322)
T TIGR01730       114 AQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGAY-VTAGQTLATIVDL  168 (322)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCce-eCCCCcEEEEEcC
Confidence                                2369999999999999999999 9999999999753

This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=96.79  E-value=0.002  Score=69.39  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             eEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .|.||++|+|.++.+.+|+. |..|++|+.|....
T Consensus       210 ~I~AP~dG~V~~~~~~~G~~-V~~g~~l~~I~~~~  243 (346)
T PRK10476        210 TVRAPFDGRVVGLKVSVGEF-AAPMQPIFTLIDTD  243 (346)
T ss_pred             EEECCCCcEEEeeecCCCCC-cCCCCeEEEEecCC
Confidence            68999999999999999999 99999999997653

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=96.77  E-value=0.003  Score=68.74  Aligned_cols=66  Identities=20%  Similarity=0.266  Sum_probs=55.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+|++++||.|++||+|++|++...                                                  
T Consensus        68 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~  147 (370)
T PRK11578         68 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLD  147 (370)
T ss_pred             cceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            359999999999999999999999986310                                                  


Q ss_pred             -----------------------------------eeEEecCCceEEEEEEecCCCccccCCC---cEEEEecCC
Q 006594          129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQ---PIAITVEDA  165 (639)
Q Consensus       129 -----------------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~---~l~~i~~~~  165 (639)
                                                         ...|+||++|+|..+++..|+. |..|+   +|+.|.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~~  221 (370)
T PRK11578        148 TAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS  221 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCcE-eecccCCceEEEEecCC
Confidence                                               1269999999999999999999 97764   788886554

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=96.76  E-value=0.0026  Score=70.44  Aligned_cols=66  Identities=20%  Similarity=0.351  Sum_probs=55.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.++++++||.|++||+|++|+....                                                  
T Consensus        94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~  173 (415)
T PRK11556         94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS  173 (415)
T ss_pred             ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence            569999999999999999999999975310                                                  


Q ss_pred             ---------------------eeEEecCCceEEEEEEecCCCccccCCC--cEEEEecCC
Q 006594          129 ---------------------TVEFESLEEGFLAKILVPEGSKDVPVGQ--PIAITVEDA  165 (639)
Q Consensus       129 ---------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~--~l~~i~~~~  165 (639)
                                           ...|+||++|+|..+.+..|+. |..|+  +|+.|.+.+
T Consensus       174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~~~  232 (415)
T PRK11556        174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQTH  232 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEecCC
Confidence                                 2268999999999999999999 99984  687775443

>PRK14843 dihydrolipoamide acetyltransferase; Provisional

Probab=96.74  E-value=0.00084  Score=72.31  Aligned_cols=40  Identities=25%  Similarity=0.390  Sum_probs=37.2

Q ss_pred             cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594          330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (639)
Q Consensus       330 ~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~  369 (639)
                      ++||++|++|+++|||++.++|||++|||+++||+++...
T Consensus         7 ~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~~   46 (347)
T PRK14843          7 RATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKDT   46 (347)
T ss_pred             cCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhccc
Confidence            4689999999999999999999999999999999988653

>TIGR00527 gcvH glycine cleavage system H protein

Probab=96.69  E-value=0.0016  Score=60.03  Aligned_cols=49  Identities=16%  Similarity=0.232  Sum_probs=40.0

Q ss_pred             cccceee-cCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (639)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~  275 (639)
                      |.|.-+. .++|+.|++||+++.||++|+..+|.||.+|+|.++.-+.-+
T Consensus        36 G~i~~v~lp~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~~l~~   85 (127)
T TIGR00527        36 GDIVFVELPEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVNDALED   85 (127)
T ss_pred             CCCceeecCCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehHhhhh
Confidence            4454442 367999999999999999999999999999999998644433

The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.62  E-value=0.0037  Score=57.27  Aligned_cols=48  Identities=27%  Similarity=0.313  Sum_probs=36.0

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCC
Q 006594          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG  148 (639)
Q Consensus       101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g  148 (639)
                      |+|+.+. .++|+.|++|++++.||+.|+..++.||.+|+|.++.-..-
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~~l~   79 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNEELL   79 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-GHHH
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEccccc
Confidence            4444443 35599999999999999999999999999999988865544

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>PRK15136 multidrug efflux system protein EmrA; Provisional

Probab=96.55  E-value=0.0033  Score=69.01  Aligned_cols=34  Identities=15%  Similarity=0.311  Sum_probs=31.5

Q ss_pred             eEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .|.||++|+|..+.++.|+. |..|++|+.|.+..
T Consensus       217 ~I~AP~dG~V~~~~v~~G~~-V~~g~pl~~Iv~~~  250 (390)
T PRK15136        217 KIVSPMTGYVSRRSVQVGAQ-ISPTTPLMAVVPAT  250 (390)
T ss_pred             EEECCCCeEEEEEecCCCCE-eCCCCeEEEEEeCC
Confidence            69999999999999999999 99999999997654

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=96.51  E-value=0.0025  Score=67.54  Aligned_cols=66  Identities=27%  Similarity=0.507  Sum_probs=48.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc---------------------e----------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA---------------------T----------------------------  129 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~---------------------~----------------------------  129 (639)
                      ..|.| +|+|++||+|++||+|++++++..                     .                            
T Consensus        28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  106 (328)
T PF12700_consen   28 VSGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAI  106 (328)
T ss_dssp             S-EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTS
T ss_pred             CCEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhh
Confidence            36999 999999999999999999986311                     1                            


Q ss_pred             ------------------e----------EEecCCceEEE-------------------------EEEecCCCccccCCC
Q 006594          130 ------------------V----------EFESLEEGFLA-------------------------KILVPEGSKDVPVGQ  156 (639)
Q Consensus       130 ------------------~----------~i~s~~~G~i~-------------------------~~~v~~g~~~v~~G~  156 (639)
                                        +          .|.||++|+|.                         ++.+..|+. |..|+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~-v~~g~  185 (328)
T PF12700_consen  107 SKEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQY-VAAGQ  185 (328)
T ss_dssp             STCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-E-ETSTT
T ss_pred             HHHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCE-ECCCc
Confidence                              1          28999999999                         999999999 99999


Q ss_pred             cEEEEecCCc
Q 006594          157 PIAITVEDAD  166 (639)
Q Consensus       157 ~l~~i~~~~~  166 (639)
                      +|+.|.+...
T Consensus       186 ~l~~i~~~~~  195 (328)
T PF12700_consen  186 PLFTIADLSN  195 (328)
T ss_dssp             CSEEEEEESE
T ss_pred             eeeeeccCCc
Confidence            9999976643

...

>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like

Probab=96.45  E-value=0.0045  Score=47.45  Aligned_cols=34  Identities=18%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             eeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          255 TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       255 ~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      ++.|.++.+|.|.++++++|+. |+.|++|+.+..
T Consensus         2 ~~~I~~~~~G~V~~v~V~~G~~-VkkGd~L~~ld~   35 (50)
T PF13533_consen    2 TVTIQAPVSGRVESVYVKEGQQ-VKKGDVLLVLDS   35 (50)
T ss_pred             eEEEeCCCCEEEEEEEecCCCE-EcCCCEEEEECc
Confidence            3578899999999999999999 999999999964

>PRK03598 putative efflux pump membrane fusion protein; Provisional

Probab=96.37  E-value=0.0049  Score=65.99  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=31.2

Q ss_pred             eeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       256 ~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      ..|.||++|+|..+.+.+|+. |..|++|+.|...
T Consensus       204 ~~I~AP~dG~V~~~~~~~G~~-V~~G~~l~~I~~~  237 (331)
T PRK03598        204 TELIAPSDGTILTRAVEPGTM-LNAGSTVFTLSLT  237 (331)
T ss_pred             CEEECCCCeEEEeccCCCCCC-cCCCCeEEEEecC
Confidence            479999999999999999999 9999999999654

>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed

Probab=96.34  E-value=0.0052  Score=67.30  Aligned_cols=64  Identities=19%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|+.|++...                                                   
T Consensus        71 ~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~  150 (385)
T PRK09578         71 AGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQ  150 (385)
T ss_pred             cEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999999999987421                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEecCCCCccccCC--CeEEEEecC
Q 006594          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED  290 (639)
Q Consensus       255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG--~~l~~i~~~  290 (639)
                                          ...|.||++|+|.++++++|+. |..|  ++|+.|...
T Consensus       151 a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~~-V~~g~~~~l~~i~~~  207 (385)
T PRK09578        151 AKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGAL-VGQDQATPLTTVEQL  207 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCCe-ecCCCCcceEEEEec
Confidence                                1369999999999999999999 9885  588888643

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=96.31  E-value=0.0098  Score=63.49  Aligned_cols=33  Identities=18%  Similarity=0.156  Sum_probs=28.5

Q ss_pred             EEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       131 ~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .|+||++|+|..+++..|+. |.. ++|+.|...+
T Consensus       206 ~i~AP~dG~V~~~~~~~G~~-v~~-~~l~~i~~~~  238 (327)
T TIGR02971       206 YVKAPIDGRVLKIHAREGEV-IGS-EGILEMGDTS  238 (327)
T ss_pred             EEECCCCeEEEEEecCCCCc-cCC-CccEEEecCC
Confidence            57899999999999999998 886 8999886543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PRK15030 multidrug efflux system transporter AcrA; Provisional

Probab=96.11  E-value=0.0081  Score=66.13  Aligned_cols=64  Identities=27%  Similarity=0.297  Sum_probs=54.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|++|+....                                                   
T Consensus        73 sG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~  152 (397)
T PRK15030         73 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  152 (397)
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Confidence            48999999999999999999999986421                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEecCCCCccccCCCe--EEEEecC
Q 006594          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP--IAITVED  290 (639)
Q Consensus       255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~--l~~i~~~  290 (639)
                                          ...|.||++|+|.++.++.|+. |..|++  |+.|...
T Consensus       153 a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~  209 (397)
T PRK15030        153 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQL  209 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCCE-ECCCCCceEEEEEec
Confidence                                1359999999999999999999 999985  6777543

>PRK09859 multidrug efflux system protein MdtE; Provisional

Probab=96.08  E-value=0.0087  Score=65.57  Aligned_cols=64  Identities=23%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|++|+....                                                   
T Consensus        69 ~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~  148 (385)
T PRK09859         69 GGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNE  148 (385)
T ss_pred             cEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            48899999999999999999999986410                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEecCCCCccccCCC--eEEEEecC
Q 006594          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVED  290 (639)
Q Consensus       255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~--~l~~i~~~  290 (639)
                                          ...|.||++|+|.++++..|+. |..|+  +|+.|...
T Consensus       149 a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~~-V~~g~~~~l~~i~~~  205 (385)
T PRK09859        149 AEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGAL-VTANQADSLVTVQRL  205 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCCe-ECCCCCcceEEEEec
Confidence                                1369999999999999999999 99984  68887543

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=96.04  E-value=0.0068  Score=55.61  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=47.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS  149 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~  149 (639)
                      ...|-|-+.+.. .=|.|+.+. .++|+.|++|+.++.||+-|+..+|.||.+|.|.++.-..-+
T Consensus        25 ~~tvGiT~~aq~-~lGdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN~~l~~   88 (131)
T COG0509          25 TATVGITDYAQD-QLGDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVNEALVD   88 (131)
T ss_pred             EEEEeCCHHHHH-hcCCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEechhhhc
Confidence            345555555554 236665553 467899999999999999999999999999999877654443

>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes

Probab=96.03  E-value=0.0093  Score=54.65  Aligned_cols=45  Identities=24%  Similarity=0.355  Sum_probs=34.6

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.|+.+.. ++|+.|++|++++.||++|.+.++.||.+|+|.++.-
T Consensus        31 G~i~~v~lp~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN~   76 (122)
T PF01597_consen   31 GDIVYVELPKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVNE   76 (122)
T ss_dssp             -SEEEEE-B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-G
T ss_pred             CceEEEEEccCCCEEecCCcEEEEEECceeeecccceEEEEEEEcc
Confidence            55555443 5699999999999999999999999999999988853

GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=95.96  E-value=0.022  Score=58.23  Aligned_cols=59  Identities=25%  Similarity=0.367  Sum_probs=50.6

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .|.+ +..++.||.|++||+|+.|+.    .+|.||.+|+|.- ++.+|-. |..|..|++|+.-.
T Consensus       172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrG-lirdG~~-V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRG-LIHEGLT-VTEGLKIGDVDPRG  230 (256)
T ss_pred             CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEE-EecCCCC-cCCCCEEEEECCCC
Confidence            4555 669999999999999999974    7999999999955 5678988 99999999997544

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>PRK12784 hypothetical protein; Provisional

Probab=95.75  E-value=0.028  Score=46.44  Aligned_cols=64  Identities=11%  Similarity=0.114  Sum_probs=57.6

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc-eeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA-TLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~-~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      .|++.++++.++++|-+=+.|+-|++..- -..|.-..+|.|.-+.+++|+. +..+..|+.+.++
T Consensus        13 ~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq~-i~~dtlL~~~edD   77 (84)
T PRK12784         13 EGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQQ-IHTDTLLVRLEDD   77 (84)
T ss_pred             ccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCce-ecCCcEEEEEeec
Confidence            48999999999999999999999999544 4568889999999999999999 9999999998654

>PRK11556 multidrug efflux system subunit MdtA; Provisional

Probab=95.69  E-value=0.013  Score=64.80  Aligned_cols=63  Identities=17%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|++|.....                                                   
T Consensus        95 sG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~~  174 (415)
T PRK11556         95 DGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVSE  174 (415)
T ss_pred             cEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH
Confidence            58999999999999999999999976310                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEecCCCCccccCCC--eEEEEec
Q 006594          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVGQ--PIAITVE  289 (639)
Q Consensus       255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~--~l~~i~~  289 (639)
                                          ...|.||++|+|..+.+..|+. |..|+  +|+.|..
T Consensus       175 a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~~-V~~g~~~~l~~i~~  230 (415)
T PRK11556        175 TEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGNQ-ISSGDTTGIVVITQ  230 (415)
T ss_pred             HHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCce-ecCCCCceeEEEec
Confidence                                1269999999999999999999 99984  6777753

>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=95.69  E-value=0.0096  Score=54.63  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=37.8

Q ss_pred             ccccee-ecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594          227 GNIAKW-RKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (639)
Q Consensus       227 g~i~~w-~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~  270 (639)
                      |.|+-. +.++|+.|++|+.++.||+-|+..+|.||.+|+|.++.
T Consensus        39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN   83 (131)
T COG0509          39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN   83 (131)
T ss_pred             CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence            455543 34778999999999999999999999999999998875

>PRK11578 macrolide transporter subunit MacA; Provisional

Probab=95.67  E-value=0.017  Score=62.90  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             eEecCCCeeEEEEecCCCCccccCC---CeEEEEecC
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVG---QPIAITVED  290 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG---~~l~~i~~~  290 (639)
                      .|.||++|+|..+.+..|+. |..|   ++|+.|...
T Consensus       185 ~I~AP~dG~V~~~~~~~G~~-V~~~~~~~~l~~i~~~  220 (370)
T PRK11578        185 RIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM  220 (370)
T ss_pred             EEECCCCcEEEeeecCCCcE-eecccCCceEEEEecC
Confidence            69999999999999999998 9766   478888643

>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C

Probab=95.56  E-value=0.0082  Score=63.57  Aligned_cols=63  Identities=29%  Similarity=0.499  Sum_probs=47.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcce--------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKAT--------------------------------------------------  255 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~--------------------------------------------------  255 (639)
                      .|.| +|++++||.|++||+|++++++...                                                  
T Consensus        29 ~G~v-~~~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  107 (328)
T PF12700_consen   29 SGRV-SVNVKEGDKVKKGQVLAELDSSDLQAQLEQAQAELEQAEAQLEQAQAEQEQQIKQAISQLSYERAKKLYSQIAIS  107 (328)
T ss_dssp             -EEE-EE-S-TTSEEETT-EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCHHTCSSTSS
T ss_pred             CEEE-EEEeCCcCEECCCCEEEEEEChhhhhhhhhhHHHHHHHHHhHHHHhhhhHHHHHHHHHHhHHHHHHhhhhhhhhH
Confidence            4889 9999999999999999999875441                                                  


Q ss_pred             -----------------e----------eEecCCCeeEE-------------------------EEecCCCCccccCCCe
Q 006594          256 -----------------L----------EFECLEEGYLA-------------------------KILAPEGSKDVAVGQP  283 (639)
Q Consensus       256 -----------------~----------ei~s~~~G~v~-------------------------~i~~~~G~~~v~vG~~  283 (639)
                                       .          .|.||++|+|.                         .+.+.+|+. |..|++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Ap~~G~V~~~~d~~e~~~~~~i~~~~~~~~~~~~~~~~~g~~-v~~g~~  186 (328)
T PF12700_consen  108 KEELDQAKANYEQAQAQLNKAQLQSQLAQIKAPFDGVVSYSIDGYENLNEDSIDPEDIDQANYSKINVNPGQY-VAAGQP  186 (328)
T ss_dssp             TCCHHHHHCHHHHHHHHHC-HHHHHHHHHEE-SSSEEEE------------EES----------E-TT-TT-E-ETSTTC
T ss_pred             HHHHHHHHhHHHHHHhhhccccccccccccccchhhhccccccccccccccccccccccccccceeccCCCCE-ECCCce
Confidence                             1          29999999999                         999999999 999999


Q ss_pred             EEEEecC
Q 006594          284 IAITVED  290 (639)
Q Consensus       284 l~~i~~~  290 (639)
                      |+.|...
T Consensus       187 l~~i~~~  193 (328)
T PF12700_consen  187 LFTIADL  193 (328)
T ss_dssp             SEEEEEE
T ss_pred             eeeeccC
Confidence            9999654

...

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=95.03  E-value=0.092  Score=46.50  Aligned_cols=47  Identities=23%  Similarity=0.229  Sum_probs=38.6

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCC
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG  148 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g  148 (639)
                      |.-.+-.|++||+|.+||.|++.+ +-.+..|-|+.+|+|..|.-...
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~~~   85 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKRPI   85 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeeeEc
Confidence            333466899999999999999986 46688999999999988765544

>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family

Probab=94.33  E-value=0.1  Score=53.39  Aligned_cols=57  Identities=26%  Similarity=0.307  Sum_probs=49.5

Q ss_pred             cceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          229 IAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       229 i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      +.+..++-||.|++||+|+.|+.    .+|.||.+|+|..+ +..|-. |..|--|+.|..-+
T Consensus       174 i~~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~~-V~~G~Ki~dIDPR~  230 (256)
T TIGR03309       174 IVTPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGLT-VTEGLKIGDVDPRG  230 (256)
T ss_pred             EEeeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCCC-cCCCCEEEEECCCC
Confidence            44558999999999999999975    69999999999886 689988 99999999996443

Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=94.29  E-value=0.097  Score=49.43  Aligned_cols=42  Identities=24%  Similarity=0.245  Sum_probs=38.2

Q ss_pred             cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594          109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus       109 ~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      ++|-.|.+||-++-+|+-|+.-+|.+|.+|.|.+|..+-.+.
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En  130 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN  130 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence            578899999999999999999999999999999998776665

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=94.13  E-value=0.085  Score=54.22  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             eEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      .|.||++|+|..+.+..|+. |..|++|+.|.+.
T Consensus        90 ~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~  122 (265)
T TIGR00999        90 EVRSPFDGYITQKSVTLGDY-VAPQAELFRVADL  122 (265)
T ss_pred             EEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcC
Confidence            47999999999999999999 9999999998754

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=93.65  E-value=0.086  Score=54.15  Aligned_cols=42  Identities=38%  Similarity=0.526  Sum_probs=36.1

Q ss_pred             EEEEecCCCeeecCCeEEEEEcccce--eEEecCCceEEEEEEecCCCc
Q 006594          104 AKWRKKEGDKIEIGDILCEIETDKAT--VEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~ietdK~~--~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      -+..|+|||+|+.||+|++   ||-.  +-++||.+|+|++|..  |+.
T Consensus        41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R--G~r   84 (257)
T PF05896_consen   41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR--GER   84 (257)
T ss_pred             ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec--CCC
Confidence            5789999999999999997   7764  5589999999999887  555

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.54  E-value=0.2  Score=53.07  Aligned_cols=58  Identities=26%  Similarity=0.231  Sum_probs=46.6

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc---ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET---DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet---dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      +=+....++.||.|++||+|++|=.   +....+|.||.+|+|.-+.  ..-. |..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~-v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPL-VYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCe-ecCCceEEEe
Confidence            4466888999999999999999843   4557789999999995544  4456 8899999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=93.46  E-value=0.21  Score=54.32  Aligned_cols=59  Identities=29%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .|=+.++.++.||.|++||+|++|=.    +...++|.||.+|+|.-  ....-. |..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~--~~~~~~-V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFA--RASRRF-VRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEE--ecCCcc-ccCCCeEEEe
Confidence            35566899999999999999999853    34455579999999944  445556 8899999876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=93.36  E-value=0.25  Score=52.03  Aligned_cols=58  Identities=21%  Similarity=0.269  Sum_probs=45.1

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc--ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet--dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      +-+.++.++.||.|++||+|++|-.  .....+|.||.+|+|.-+.  ..-. |..|+.|+.|
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI  286 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence            3345889999999999999999953  1334789999999995444  4445 8899999876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain

Probab=93.05  E-value=0.14  Score=45.33  Aligned_cols=43  Identities=26%  Similarity=0.273  Sum_probs=38.0

Q ss_pred             cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEe
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKIL  270 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~  270 (639)
                      |.-.+-.|++||.|++||.|++.+. -...-|.|+.+|+|..|.
T Consensus        39 G~~~~p~V~~Gd~V~~GQ~Ia~~~~-~~sa~iHAsvSG~V~~I~   81 (101)
T PF13375_consen   39 GAPAEPVVKVGDKVKKGQLIAEAEG-FLSAPIHASVSGTVTAIE   81 (101)
T ss_pred             CCcceEEEcCCCEEcCCCEEEecCC-CcEeeEEcCCCeEEEEEe
Confidence            5666789999999999999999974 568899999999999984

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=92.61  E-value=0.42  Score=51.07  Aligned_cols=59  Identities=19%  Similarity=0.235  Sum_probs=46.2

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      +=+....++.||.|++||+|++|=.    .....+|.||.+|+|.-..  ..-. |..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~~-v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPGL-VRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCCc-cCCCCEEEEEe
Confidence            4466899999999999999999853    2445679999999996444  3345 88888898874

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=92.44  E-value=0.34  Score=51.94  Aligned_cols=58  Identities=22%  Similarity=0.371  Sum_probs=45.8

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      +=+....++.||.|++||+|++|=.    .....+|.||.+|+|.-+.  ..-. |..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence            3455889999999999999999843    2246689999999996644  4455 8999999876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=92.18  E-value=0.18  Score=44.23  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=30.4

Q ss_pred             EEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594          131 EFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus       131 ~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      .|.||++|+|..+.++.|+. |..|++|+.|.+.
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence            37899999999999999999 9999999999765

>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=91.67  E-value=0.41  Score=50.42  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=45.4

Q ss_pred             cccceeecCCCCccccCCeeeEeec--CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      +-+.++.++.||.|++||+|++|..  .....+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~~-v~~G~~l~~i  286 (287)
T cd06251         227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLPL-VNEGDALFHI  286 (287)
T ss_pred             CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCCc-cCCCCEEEEe
Confidence            3456789999999999999999954  2334789999999996654  3344 8889998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=91.48  E-value=0.38  Score=51.00  Aligned_cols=58  Identities=29%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             cccceeecCCCCccccCCeeeEeec---CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET---DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      +=+...+++.||.|++||+|++|=.   +...-+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       237 ~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p~-v~~G~~l~~i  297 (298)
T cd06253         237 SGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYPL-VYEGSLVARI  297 (298)
T ss_pred             CeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCCe-ecCCceEEEe
Confidence            4477788999999999999999855   4567789999999997764  4455 8889998876

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=91.43  E-value=0.13  Score=53.75  Aligned_cols=35  Identities=34%  Similarity=0.405  Sum_probs=24.8

Q ss_pred             eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      +.|.+++.|+|.+|+|++|+. |+.|++|+.|++..
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~~~   36 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDPTD   36 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--HH
T ss_pred             EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEeec
Confidence            468899999999999999999 99999999998643

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=90.98  E-value=0.34  Score=45.84  Aligned_cols=50  Identities=26%  Similarity=0.264  Sum_probs=36.8

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeE-EecCCceEEEEEEecCC
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVPEG  148 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~-i~s~~~G~i~~~~v~~g  148 (639)
                      .||..+-..+.+||+|.+||.|+-+.|-|-.+- +.||.+|+|.-+.=-.+
T Consensus        87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~p~  137 (150)
T PF09891_consen   87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEIPW  137 (150)
T ss_dssp             EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEETT
T ss_pred             ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEecCC
Confidence            367777889999999999999999999999987 89999999976654433

; PDB: 3D4R_D.

>PF13437 HlyD_3: HlyD family secretion protein

Probab=90.85  E-value=0.33  Score=42.58  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             eEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      +|.||++|+|..+.++.|+. |..|++|+.|...
T Consensus         1 ~i~AP~~G~V~~~~~~~G~~-v~~g~~l~~i~~~   33 (105)
T PF13437_consen    1 TIRAPFDGVVVSINVQPGEV-VSAGQPLAEIVDT   33 (105)
T ss_pred             CEECCCCEEEEEEeCCCCCE-ECCCCEEEEEEcc
Confidence            47899999999999999999 9999999999765

>COG3608 Predicted deacylase [General function prediction only]

Probab=90.26  E-value=0.76  Score=49.00  Aligned_cols=60  Identities=22%  Similarity=0.354  Sum_probs=48.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcc---cceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETD---KATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietd---K~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      ++-+++..|+.||.|++||+|+.|=..   +..++|+|+.+|+|..+....  . |+.|+.++.+.
T Consensus       263 ~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~  325 (331)
T COG3608         263 AGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVG  325 (331)
T ss_pred             CCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeec
Confidence            556779999999999999999988653   889999999999997766543  3 66776666653

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=90.24  E-value=0.34  Score=51.67  Aligned_cols=42  Identities=26%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             EEEcccceeEEecCCc---eEEEEEEecCCCccccCCCcEEEEecC
Q 006594          122 EIETDKATVEFESLEE---GFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus       122 ~ietdK~~~~i~s~~~---G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      .|+..--.+.|.++.+   |+|.+++|++||. |+.|++|+.|+..
T Consensus         6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~~-V~~G~~L~~ld~~   50 (327)
T TIGR02971         6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGDR-VQAGQVLAELDSR   50 (327)
T ss_pred             eEeecCceEEecCCCCCCCcEEEEEEccCCCE-ecCCcEEEEecCc
Confidence            3444444567889999   9999999999999 9999999999765

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases

Probab=90.20  E-value=0.58  Score=50.91  Aligned_cols=59  Identities=27%  Similarity=0.415  Sum_probs=46.8

Q ss_pred             ccccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .+=+...+++.||.|++||+|++|-.    +....+|.||.+|+|..+  ...-. |..|+.|+.|
T Consensus       296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~~-V~~G~~l~~I  358 (359)
T cd06250         296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRRF-VRAGDELAKI  358 (359)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCcc-ccCCCeEEEe
Confidence            35578899999999999999998854    334555799999999765  44555 8899998876

This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding

>COG3608 Predicted deacylase [General function prediction only]

Probab=90.08  E-value=0.77  Score=48.94  Aligned_cols=62  Identities=21%  Similarity=0.345  Sum_probs=48.8

Q ss_pred             cccccceeecCCCCccccCCeeeEeec---CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          225 NQGNIAKWRKNEGDKIEVGDVICEIET---DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       225 ~~g~i~~w~v~~Gd~V~~gd~l~~vet---dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .++-+++-+++.||.|++||+|+.|-.   -+...||.|+.+|+|..+.-.-  - +..|+.++++..
T Consensus       262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r~~~--~-v~~Gdl~~~v~~  326 (331)
T COG3608         262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARRSLR--L-VQPGDLLKVVGR  326 (331)
T ss_pred             CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEeecc--c-cCCCCeeeeecc
Confidence            356689999999999999999998765   4889999999999998874321  2 566666666643

>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT

Probab=89.98  E-value=10  Score=41.99  Aligned_cols=165  Identities=16%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             EeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCC-------
Q 006594          436 YLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEK-------  508 (639)
Q Consensus       436 ~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~-------  508 (639)
                      +.+..+++..+.+..++.      +.|++++++-|++.+|.++  ++..     ++ .....+.+++.|+...       
T Consensus       231 ~~~~~~~~~~l~~~a~~~------g~T~ndvllaa~~~al~~~--~~~~-----~~-~~~~~i~~~~pv~~R~~~~~~~~  296 (446)
T TIGR02946       231 FAAQSLPLADVKAVAKAF------GVTINDVVLAAVAGALRRY--LEER-----GE-LPDDPLVAMVPVSLRPMEDDSEG  296 (446)
T ss_pred             EEeeccCHHHHHHHHHHh------CCCHHHHHHHHHHHHHHHH--HHHc-----CC-CCCCceEEEEeeeccccccCCCC
Confidence            346677777877776666      7999999999999999875  2211     11 1122467777776321       


Q ss_pred             C----eEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCC-------------CCC-----------CC--CCCeEEEEeCC
Q 006594          509 G----LMTPIVRNADQKSISAISMEVKELAEKARAGKL-------------APH-----------EF--QGGTFSISNLG  558 (639)
Q Consensus       509 g----l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l-------------~~~-----------d~--~ggtftISnlG  558 (639)
                      |    .++..+. ....+..+...++++....+++...             .|.           ..  ..-+++|||+|
T Consensus       297 ~N~~~~~~~~l~-~~~~~~~~~l~~v~~~~~~~k~~~~~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~~~~~~~SNvp  375 (446)
T TIGR02946       297 GNQVSAVLVPLP-TGIADPVERLSAIHASMTRAKESGQAMGANALLALSGLLPAPLLRLALRALARKAQRLFNLVISNVP  375 (446)
T ss_pred             CCEEEEEEecCC-CCCCCHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHHHhccHHHHHHHHHHhhccCCCceeEEEeCCC
Confidence            1    2222222 2333444544556655555554410             110           00  12378899997


Q ss_pred             CCCcc---------ceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHH
Q 006594          559 MFPVD---------QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCS  629 (639)
Q Consensus       559 ~~g~~---------~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~  629 (639)
                      .....         .+.++.....-..++++-..     .+           ..|.+++++|-.++..  ..+|.+.|++
T Consensus       376 g~~~~~~~~g~~v~~~~~~~p~~~~~~l~~~~~s-----y~-----------g~l~~~~~~d~~~~~d--~~~l~~~~~~  437 (446)
T TIGR02946       376 GPREPLYLAGAKLDELYPLSPLLDGQGLNITVTS-----YN-----------GQLDFGLLADRDAVPD--PQELADALEA  437 (446)
T ss_pred             CCCcccEecCeeEEEeeccccccCCCeEEEEEEe-----cC-----------CeEEEEEeechhhCCC--HHHHHHHHHH
Confidence            65421         12222111111122222111     01           2689999999988873  7778888877


Q ss_pred             HHhc
Q 006594          630 NFSD  633 (639)
Q Consensus       630 ~Le~  633 (639)
                      .|+.
T Consensus       438 ~l~~  441 (446)
T TIGR02946       438 ALEE  441 (446)
T ss_pred             HHHH
Confidence            7765

This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.

>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=89.86  E-value=0.82  Score=48.83  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=47.1

Q ss_pred             cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      +-+....++.||.|++||+|++|-.    ....-+|.||.+|+|.-+..  .-. |..|+.|+.|.
T Consensus       252 ~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~~--~~~-v~~G~~l~~i~  314 (316)
T cd06252         252 PGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARRP--PGL-VRRGDCLAVLA  314 (316)
T ss_pred             CeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEeeC--CCc-cCCCCEEEEEe
Confidence            4467788999999999999999865    34567899999999976643  344 78888888874

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]

Probab=89.50  E-value=0.39  Score=50.97  Aligned_cols=40  Identities=33%  Similarity=0.469  Sum_probs=34.1

Q ss_pred             EEEecCCCeeecCCeEEEEEcccc--eeEEecCCceEEEEEEecC
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKA--TVEFESLEEGFLAKILVPE  147 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~--~~~i~s~~~G~i~~~~v~~  147 (639)
                      ...|++||.|++|++|+|   ||-  .+-++||.+|+|..|+-.+
T Consensus        42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG~   83 (447)
T COG1726          42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRGE   83 (447)
T ss_pred             cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeeccc
Confidence            567999999999999998   766  4668999999999887543

>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins

Probab=89.38  E-value=0.35  Score=49.75  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=35.3

Q ss_pred             cccceeecCCCCccccCCeeeEeecCcce--eeEecCCCeeEEEEec
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIETDKAT--LEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~--~ei~s~~~G~v~~i~~  271 (639)
                      |..-+.+|+|||.|+.||+|++   ||-+  +-+.||.+|+|.+|.-
T Consensus        38 g~~Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~R   81 (257)
T PF05896_consen   38 GMKPKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINR   81 (257)
T ss_pred             CCCccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEec
Confidence            4456789999999999999985   6665  5588999999999876

The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=89.30  E-value=0.86  Score=47.98  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=40.3

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEc--ccceeEEecCCceEEEEEEecCCCccccCCCcE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKILVPEGSKDVPVGQPI  158 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~iet--dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l  158 (639)
                      .+=+.+.+++.||.|++||+|++|=.  .....+|.||++|+|.-+...  -. |..|+.|
T Consensus       230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l  287 (288)
T cd06254         230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL  287 (288)
T ss_pred             CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence            34566888999999999999999832  244567999999999554433  33 5666654

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2

Probab=89.10  E-value=5.4  Score=44.84  Aligned_cols=29  Identities=17%  Similarity=0.313  Sum_probs=22.9

Q ss_pred             EEEEEEEecccccChHHH-HHHHHHHHHHH
Q 006594          603 KMNLTLSADHRVFEGKVG-GAFFSALCSNF  631 (639)
Q Consensus       603 ~m~lslt~DHRviDG~~a-a~Fl~~l~~~L  631 (639)
                      .|++++++=.-+++-.+. -.|++.|++.|
T Consensus       451 ~L~i~~s~~~~~~~~~~~~~~~~~~~~~~~  480 (480)
T PF07247_consen  451 GLNISISWQEGIVEDEEMEDEFMELFKQNL  480 (480)
T ss_pred             ceEEEEEEeCCcccccchHHHHHHHHHhhC
Confidence            588999988888876666 58999888764

3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=88.23  E-value=0.48  Score=52.89  Aligned_cols=44  Identities=30%  Similarity=0.367  Sum_probs=35.8

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEe
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV  145 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v  145 (639)
                      |..-+-.|++||+|..||+|++-. .-.++.|.||.+|+|++|..
T Consensus        38 G~~~k~~Vk~GD~V~~Gq~I~~~~-~~~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        38 GMRPKMKVRPGDKVKAGQPLFEDK-KNPGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecC-CCceEEEEcCCCeEEEEEec
Confidence            334567899999999999999843 12678899999999999954

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>TIGR02994 ectoine_eutE ectoine utilization protein EutE

Probab=87.79  E-value=1.2  Score=47.74  Aligned_cols=58  Identities=24%  Similarity=0.369  Sum_probs=46.7

Q ss_pred             cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      +=+...+++.||.|++||+|++|-.    .....+|.||.+|+|..+.  ..-. |..|+.|+.|
T Consensus       263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~~-V~~Gd~l~~i  324 (325)
T TIGR02994       263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPGL-IKSGDCIAVL  324 (325)
T ss_pred             CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCCc-cCCCCEEEEe
Confidence            4466788999999999999999864    3346789999999997754  4455 8889988876

Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.

>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional

Probab=87.67  E-value=2.3  Score=56.00  Aligned_cols=42  Identities=26%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCC
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG  148 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g  148 (639)
                      ..+|++|+.|+.|++||+.  |=-+..|-+..+|+|.=..+.+|
T Consensus      2423 ~l~v~~g~~V~~g~~la~w--dp~~~piisE~~G~v~f~d~~~g 2464 (2836)
T PRK14844       2423 KLYVDEGGSVKIGDKVAEW--DPYTLPIITEKTGTVSYQDLKDG 2464 (2836)
T ss_pred             EEEecCCCEecCCCEEEEE--cCCCcceEeecceEEEEEEEecc
Confidence            4789999999999999997  45566666666666654444444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=87.55  E-value=0.71  Score=50.71  Aligned_cols=43  Identities=26%  Similarity=0.361  Sum_probs=35.8

Q ss_pred             EEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       122 ~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .|........|.++.+|+|.+++|.+||. |+.|++|+.++...
T Consensus        36 ~v~~~~~~~~v~~~~~G~v~~i~V~eG~~-V~kG~~L~~ld~~~   78 (423)
T TIGR01843        36 KVVPSGNVKVVQHLEGGIVREILVREGDR-VKAGQVLVELDATD   78 (423)
T ss_pred             EEEECCCeeecccCCCcEEEEEEeCCCCE-ecCCCeEEEEccch
Confidence            34455666678899999999999999999 99999999997654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=87.11  E-value=0.77  Score=51.58  Aligned_cols=36  Identities=11%  Similarity=0.120  Sum_probs=32.2

Q ss_pred             eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ...|.++..|+|.+|+|.+||. |+.|++|+.|+...
T Consensus        59 ~~~vq~~~~G~v~~i~V~eG~~-V~~G~~L~~ld~~~   94 (457)
T TIGR01000        59 LSKIQSTSNNAIKENYLKENKF-VKKGDLLVVYDNGN   94 (457)
T ss_pred             eEEEEcCCCcEEEEEEcCCCCE-ecCCCEEEEECchH
Confidence            4578899999999999999999 99999999996543

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein

Probab=87.06  E-value=0.74  Score=51.05  Aligned_cols=36  Identities=22%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .+.|.++.+|+|.+++|++||. |+.|++|+.|+...
T Consensus        58 ~~~v~a~~~G~V~~i~V~eG~~-V~kGq~L~~l~~~~   93 (421)
T TIGR03794        58 VDTIQSPGSGVVIDLDVEVGDQ-VKKGQVVARLFQPE   93 (421)
T ss_pred             eeEEECCCCeEEEEEECCCcCE-ECCCCEEEEECcHH
Confidence            4478999999999999999999 99999999997654

Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=86.46  E-value=0.6  Score=39.03  Aligned_cols=23  Identities=39%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             EEEEecCCCeeecCCeEEEEEcc
Q 006594          104 AKWRKKEGDKIEIGDILCEIETD  126 (639)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~ietd  126 (639)
                      +.++++.||.|++||+||+|=++
T Consensus        34 i~l~~k~Gd~V~~Gd~l~~i~~~   56 (75)
T PF07831_consen   34 IELHKKVGDRVEKGDPLATIYAN   56 (75)
T ss_dssp             EEESS-TTSEEBTTSEEEEEEES
T ss_pred             eEecCcCcCEECCCCeEEEEEcC
Confidence            47999999999999999998664

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry

Probab=86.25  E-value=0.6  Score=48.77  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=23.8

Q ss_pred             eeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          256 LEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       256 ~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      ..|.+++.|+|.+|+|++|+. |+.|++|+.|..
T Consensus         2 ~~Vq~~~~G~V~~i~V~eG~~-VkkGq~L~~LD~   34 (305)
T PF00529_consen    2 KIVQSLVGGIVTEILVKEGQR-VKKGQVLARLDP   34 (305)
T ss_dssp             EEE--SS-EEEEEE-S-TTEE-E-TTSECEEE--
T ss_pred             EEEeCCCCeEEEEEEccCcCE-EeCCCEEEEEEe
Confidence            468899999999999999999 999999999963

; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=86.14  E-value=0.67  Score=51.85  Aligned_cols=44  Identities=34%  Similarity=0.410  Sum_probs=35.4

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEe
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILV  145 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v  145 (639)
                      |...+-.|++||+|..||.|++-.. -.++.+.||.+|+|+.|..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~-~~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKK-NPGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCC-CceEEEEcCCCeEEEEEcc
Confidence            3334678999999999999997432 2578899999999999953

>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function

Probab=85.21  E-value=1.3  Score=42.01  Aligned_cols=45  Identities=22%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCccee-eEecCCCeeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-EFECLEEGYLAKIL  270 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-ei~s~~~G~v~~i~  270 (639)
                      +|..+-..+.+||.|.+||.|+-+.|-|-.+ -+.||.+|+|.-+.
T Consensus        88 eG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~  133 (150)
T PF09891_consen   88 EGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVI  133 (150)
T ss_dssp             ESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEE
T ss_pred             cceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEE
Confidence            5677778889999999999999999999987 48999999997664

; PDB: 3D4R_D.

>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit

Probab=84.59  E-value=0.94  Score=50.60  Aligned_cols=40  Identities=20%  Similarity=0.216  Sum_probs=34.5

Q ss_pred             EEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEE
Q 006594          104 AKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKIL  144 (639)
Q Consensus       104 ~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~  144 (639)
                      .+-.|++||+|+.||.|++-+ ...+..|.||.+|+|++|.
T Consensus        43 ~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~   82 (435)
T TIGR01945        43 AEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE   82 (435)
T ss_pred             CceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence            357899999999999999963 3368999999999998875

The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.

>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]

Probab=84.44  E-value=0.71  Score=43.76  Aligned_cols=42  Identities=21%  Similarity=0.243  Sum_probs=37.0

Q ss_pred             CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594          235 NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK  276 (639)
Q Consensus       235 ~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~  276 (639)
                      ++|-.|.+||-++-+|.=|+.-||.+|.+|.|.+|.-+-.+.
T Consensus        89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l~En  130 (172)
T KOG3373|consen   89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKLEEN  130 (172)
T ss_pred             CCCCccccCcceeeeeehhhhhhhhCcCCceEEEeccccccC
Confidence            677889999999999999999999999999999997555443

>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters)

Probab=84.06  E-value=1.3  Score=45.32  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=31.9

Q ss_pred             eeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          129 TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       129 ~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .+.|+||++|+|..+.+..|+. |..|++|+.|.+..
T Consensus        88 ~~~i~AP~dG~V~~~~~~~G~~-v~~g~~l~~i~~~~  123 (265)
T TIGR00999        88 YVEVRSPFDGYITQKSVTLGDY-VAPQAELFRVADLG  123 (265)
T ss_pred             eEEEECCCCeEEEEEEcCCCCE-eCCCCceEEEEcCC
Confidence            3468999999999999999999 99999999997654

>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional

Probab=83.98  E-value=1.8  Score=48.49  Aligned_cols=44  Identities=25%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.--+.+|++||+|++||.|++-... ...-+.||.+|+|..|..
T Consensus        39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~~   82 (448)
T PRK05352         39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAINR   82 (448)
T ss_pred             CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEcc
Confidence            56678999999999999999966544 468899999999999943

>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=83.97  E-value=1.7  Score=45.67  Aligned_cols=55  Identities=16%  Similarity=0.223  Sum_probs=41.2

Q ss_pred             cccceeecCCCCccccCCeeeEeec--CcceeeEecCCCeeEEEEecCCCCccccCCCeE
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET--DKATLEFECLEEGYLAKILAPEGSKDVAVGQPI  284 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet--dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l  284 (639)
                      +-+.+.+++.||.|++||+|++|=.  .....+|.||++|+|.-+...  -. |..|+.|
T Consensus       231 ~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~~~--~~-v~~G~~l  287 (288)
T cd06254         231 SGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNTAT--LP-VRKGDPL  287 (288)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEeeCC--Cc-cCCCCcc
Confidence            4477888999999999999999932  244678999999999776432  23 5556554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit

Probab=83.10  E-value=1.6  Score=48.89  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=38.3

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      .|.--+.+|++||+|+.||+|++-... ..+-|.||.+|+|++|.-
T Consensus        37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~~~-~s~~ihApvSGtV~~I~~   81 (447)
T TIGR01936        37 VGMRPKMKVRPGDKVKAGQPLFEDKKN-PGVKFTSPVSGEVVAINR   81 (447)
T ss_pred             CCCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEec
Confidence            366678999999999999999987644 478899999999999953

This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]

Probab=82.23  E-value=1.1  Score=37.54  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=22.1

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCc
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDK  253 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK  253 (639)
                      -+.=+.++++.||.|++||+||+|-++.
T Consensus        30 ~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~   57 (75)
T PF07831_consen   30 PAVGIELHKKVGDRVEKGDPLATIYAND   57 (75)
T ss_dssp             TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred             cCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence            3455689999999999999999998764

It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....

>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases

Probab=81.50  E-value=3.6  Score=43.47  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc--ccceeEEecCCceEEEEE
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET--DKATVEFESLEEGFLAKI  143 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet--dK~~~~i~s~~~G~i~~~  143 (639)
                      +=+.+..++.||.|++||+|++|-.  .....++.||.+|+|.-+
T Consensus       239 ~Gi~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~  283 (293)
T cd06255         239 GGLFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI  283 (293)
T ss_pred             CeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence            3455777888888888888888742  122445788888887554

ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.

>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]

Probab=80.30  E-value=3.3  Score=43.54  Aligned_cols=46  Identities=30%  Similarity=0.329  Sum_probs=36.5

Q ss_pred             CCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594          117 GDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus       117 g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      -.....++. .-...+.++..|.|.+++|++||. |+.|++|+.++..
T Consensus        55 ~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~~-Vk~Gq~L~~ld~~  100 (372)
T COG0845          55 VRAPGRVEA-TRSVEVLARVAGIVAEILVKEGDR-VKKGQLLARLDPS  100 (372)
T ss_pred             eeeeeEEEe-eeeeeEecccccEEEEEEccCCCe-ecCCCEEEEECCc
Confidence            334445554 334478888999999999999999 9999999999763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	639
3b8k_A	239	Structure Of The Truncated Human Dihydrolipoyl Acet		4e-47
3duf_I	428	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		4e-38
3mae_A	256	Crystal Structure Of Probable Dihydrolipamide Acety		3e-31
1c4t_A	233	Catalytic Domain From Trimeric Dihydrolipoamide Suc		1e-28
1b5s_A	242	Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt		2e-28
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		8e-26
1y8n_B	128	Crystal Structure Of The Pdk3-L2 Complex Length = 1		3e-22
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		2e-24
1fyc_A	106	Inner Lipoyl Domain From Human Pyruvate Dehydrogena		6e-22
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		2e-23
3crk_C	87	Crystal Structure Of The Pdhk2-L2 Complex. Length =		4e-21
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		3e-23
2dne_A	108	Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain		7e-22
1dpc_A	243	Crystallographic And Enzymatic Investigations On Th		1e-22
1dpd_A	243	Crystallographic And Enzymatic Investigations On Th		5e-22
1eaa_A	243	Atomic Structure Of The Cubic Core Of The Pyruvate		8e-22
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		5e-21
2dnc_A	98	Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain		4e-17
1dpb_A	243	Crystallographic And Enzymatic Investigations On Th		5e-21
1zy8_L	229	The Crystal Structure Of Dihydrolipoamide Dehydroge		7e-21
3rqc_A	224	Crystal Structure Of The Catalytic Core Of The 2-Ox		1e-19
3l60_A	250	Crystal Structure Of Branched-Chain Alpha-Keto Acid		1e-16
2ihw_A	262	Crystal Structure Of A Cubic Core Of The Dihydrolip		3e-16
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		3e-07
1lab_A	80	Three-Dimensional Structure Of The Lipoyl Domain Fr		1e-06
2l5t_A	77	Solution Nmr Structure Of E2 Lipoyl Domain From The		5e-05
2xt6_A	1113	Crystal Structure Of Mycobacterium Smegmatis Alpha-		1e-04
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		2e-04
1pmr_A	80	Lipoyl Domain From The Dihydrolipoyl Succinyltransf		6e-04

>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239

Iteration: 1
 Score =  186 bits (472), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 103/222 (46%), Positives = 137/222 (61%), Gaps = 13/222 (5%)
Query: 409 FEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE--KHNTKVSVNDI 466
           F D P + IR+VIA+RL++SKQ  PH               RKEL +  +  +K+SVND 
Sbjct: 12  FTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDF 71
Query: 467 VIKAVAVALKNVPEANAYWD---VEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
           +IKA A+A   VPEAN+ W    + +  +V     D+S+AV+T  GL+TPIV NA  K +
Sbjct: 72  IIKASALACLKVPEANSSWMDTVIRQNHVV-----DVSVAVSTPAGLITPIVFNAHIKGV 126
Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
             I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G   
Sbjct: 127 ETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 186
Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFS 625
             + P   +D  +   V + M++TLS DHRV +G VG  + +
Sbjct: 187 DKLVP---ADNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLA 225

>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428

Iteration: 1
 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 211/444 (47%), Gaps = 41/444 (9%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
            ++P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64
Query: 275 SKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEV-------------KGEK-ETHHDSKDV 320
           +    VGQ + IT++ PG     +N    G E              K EK +    +   
Sbjct: 65  TV-ATVGQTL-ITLDAPG----YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPA 118
Query: 321 VKVQKGSFTKI--SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISS 378
            + + G   ++   PS +    E G+D   +Q +G  G +LK D+ A +  G   +  ++
Sbjct: 119 AEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAA 178
Query: 379 HTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXX 438
             +    +  P T+    P ++  +           + IR+ IA+ ++ SK   PH    
Sbjct: 179 EEKAAPAAAKPATTEGEFPETREKM-----------SGIRRAIAKAMVHSKHTAPHVTLM 227
Query: 439 XXXXXXXXXXFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
                      RK+ K    +   K++    V+KA+  AL+  P  N   D E  EI+  
Sbjct: 228 DEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQK 287
Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
              +I IA  T++GL+ P++++AD+K I A++ E+ ELAEKAR GKL P E +G + +I+
Sbjct: 288 HYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTIT 347
Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVF 615
           N+G      F  +IN P+  IL +GR   + E  I  DG    A +  + L+LS DHR+ 
Sbjct: 348 NIGSAGGQWFTPVINHPEVAILGIGR---IAEKPIVRDGEIVAAPM--LALSLSFDHRMI 402
Query: 616 EGKVGGAFFSALCSNFSDIRRLLL 639
           +G       + +    SD   LL+
Sbjct: 403 DGATAQKALNHIKRLLSDPELLLM 426

>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256

Iteration: 1
 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 123/231 (53%), Gaps = 11/231 (4%)
Query: 410 EDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRK----ELKEKHNTKVSVND 465
           ++ P   +RK IA+ +  SKQ  PH              +R       K++    ++   
Sbjct: 19  KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFA 78
Query: 466 IVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525
             IKAVA ALK  P+ N+ W  +K  I+    I+ISIA+A    L  P+++NAD+KSI  
Sbjct: 79  FFIKAVAQALKEFPQLNSTWAGDK--IIEHANINISIAIAAGDLLYVPVIKNADEKSIKG 136
Query: 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQV 585
           I+ E+ ELA KAR GKL+  + +GGTF++++ G F   Q   IIN PQA IL V   + V
Sbjct: 137 IAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQV--ESIV 194
Query: 586 VEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRR 636
             PVI  D     AV   +NL LS DHR+ +G + G F  A+ +N   I +
Sbjct: 195 KRPVIIDD---MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISK 242

>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233

Iteration: 1
 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 11/231 (4%)
Query: 413 PNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE----KHNTKVSVNDIVI 468
           P T++RK +A RLLE+K +T                 RK+  E    +H  ++      +
Sbjct: 8   PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67
Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
           KAV  ALK  PE NA  D +  ++V  +  D+S+AV+T +GL+TP++R+ D   ++ I  
Sbjct: 68  KAVVEALKRYPEVNASIDGD--DVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125
Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEP 588
           ++KELA K R GKL   +  GG F+I+N G+F       IINPPQ+ IL +   + + + 
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGM---HAIKDR 182
Query: 589 VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
            +  +G     ++  M L LS DHR+ +G+    F   +     D  RLLL
Sbjct: 183 PMAVNGQ--VEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231

>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242

Iteration: 1
 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
Query: 411 DFPNTQ-----IRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELKE---KHNTKVS 462
           +FP T+     IR+ IA+ ++ SK   PH               RK+ K    +   K++
Sbjct: 11  EFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLT 70
Query: 463 VNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKS 522
               V+KA+  AL+  P  N   D E  EI+     +I IA  T++GL+ P++++AD+K 
Sbjct: 71  FLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKP 130
Query: 523 ISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRG 582
           I A++ E+ ELAEKAR GKL P E +G + +I+N+G      F  +IN P+  IL +GR 
Sbjct: 131 IFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGR- 189
Query: 583 NQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
             + E  I  DG    A +  + L+LS DHR+ +G       + +    SD   LL+
Sbjct: 190 --IAEKPIVRDGEIVAAPM--LALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 67/92 (72%)
Query: 77  HFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLE 136
           +F  S  P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETDKAT+ FE  E
Sbjct: 18  YFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQE 77
Query: 137 EGFLAKILVPEGSKDVPVGQPIAITVEDADDI 168
           EG+LAKILVPEG++DVP+G P+ I VE   DI
Sbjct: 78  EGYLAKILVPEGTRDVPLGTPLCIIVEKEADI 109

>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex Length = 128

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 62/88 (70%)
Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  EEGYL
Sbjct: 22  SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYL 81
Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDV 294
           AKIL PEG++DV +G P+ I VE   D+
Sbjct: 82  AKILVPEGTRDVPLGTPLCIIVEKEADI 109

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/90 (57%), Positives = 66/90 (73%)
Query: 79  SSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEG 138
           S+   P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETDKAT+ FE  EEG
Sbjct: 2   SNMSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEG 61
Query: 139 FLAKILVPEGSKDVPVGQPIAITVEDADDI 168
           +LAKILVPEG++DVP+G P+ I VE   DI
Sbjct: 62  YLAKILVPEGTRDVPLGTPLCIIVEKEADI 91

>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase (Pdh) Complex, Nmr, 1 Structure Length = 106

Iteration: 1
 Score =  102 bits (254), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/85 (54%), Positives = 61/85 (71%)
Query: 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI 269
           PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  EEGYLAKI
Sbjct: 7   PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKI 66
Query: 270 LAPEGSKDVAVGQPIAITVEDPGDV 294
           L PEG++DV +G P+ I VE   D+
Sbjct: 67  LVPEGTRDVPLGTPLCIIVEKEADI 91

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 63/85 (74%)
Query: 84  PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI 143
           P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETD AT+ FE  EEG+LAKI
Sbjct: 3   PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 144 LVPEGSKDVPVGQPIAITVEDADDI 168
           LVPEG++DVP+G P+ I VE   DI
Sbjct: 63  LVPEGTRDVPLGTPLCIIVEKEADI 87

>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex. Length = 87

Iteration: 1
 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/85 (52%), Positives = 60/85 (70%)
Query: 210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI 269
           PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETD AT+ FE  EEGYLAKI
Sbjct: 3   PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 270 LAPEGSKDVAVGQPIAITVEDPGDV 294
           L PEG++DV +G P+ I VE   D+
Sbjct: 63  LVPEGTRDVPLGTPLCIIVEKEADI 87

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/81 (62%), Positives = 64/81 (79%)
Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FESLEE ++AKILV EG
Sbjct: 10  VPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEG 69
Query: 149 SKDVPVGQPIAITVEDADDIQ 169
           ++DVP+G  I ITV   +DI+
Sbjct: 70  TRDVPIGAIICITVGKPEDIE 90

>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of Human 2-Oxoacid Dehydrogenase Length = 108

Iteration: 1
 Score =  102 bits (254), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 60/83 (72%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P+LSPTM  G IA+W K EGDKI  GD+I E+ETDKAT+ FE LEE Y+AKIL  EG++
Sbjct: 12  LPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTR 71
Query: 277 DVAVGQPIAITVEDPGDVGTVKN 299
           DV +G  I ITV  P D+   KN
Sbjct: 72  DVPIGAIICITVGKPEDIEAFKN 94

>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 122/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + EK   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
           P+  IL V + +  ++PV   DG    P ++  + L+LS DHRV +G     F   L   
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVIDGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
            +DIR +LL
Sbjct: 235 LADIRAILL 243

>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + EK   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+I++LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
           P+  IL V + +  ++PV   DG    P ++  + L+LS DHRV  G     F   L   
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVINGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
            +DIR +LL
Sbjct: 235 LADIRAILL 243

>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243

Iteration: 1
 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 121/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + +K   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAKKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
           P+  IL V + +  ++PV   DG    P ++  + L+LS DHRV  G     F   L   
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDHRVINGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
            +DIR +LL
Sbjct: 235 LADIRAILL 243

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 63/87 (72%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           MP+LSPTM +GNI KW KKEG+ +  GD LCEIETDKA V  ++ ++G LAKI+V EGSK
Sbjct: 12  MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 151 DVPVGQPIAITVEDADDIQHIPATIAG 177
           ++ +G  I + VE+ +D +H+    +G
Sbjct: 72  NIRLGSLIGLIVEEGEDWKHVSGPSSG 98

>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From Human 2-Oxoacid Dehydrogenase Length = 98

Iteration: 1
 Score = 86.7 bits (213), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           MP+LSPTM +GNI KW K EG+ +  GD +CEIETDKA +  +  ++G LAKI+  EGSK
Sbjct: 12  MPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK 71
Query: 277 DVAVGQPIAITVEDPGD 293
           ++ +G  I + VE+  D
Sbjct: 72  NIRLGSLIGLIVEEGED 88

>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243

Iteration: 1
 Score = 99.8 bits (247), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 120/249 (48%), Gaps = 10/249 (4%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFR---K 451
           + P    D       E+ P T++ ++ A  L  S  N PH              FR   K
Sbjct: 1   IPPIPPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQK 60
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLM 511
            + EK   K++V  +++KA A  LK +P+ N+        ++    + I  AV T  GL+
Sbjct: 61  AVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLL 120
Query: 512 TPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINP 571
            P++RN DQKS+  ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N 
Sbjct: 121 VPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNA 180
Query: 572 PQAGILAVGRGNQVVEPVIGSDGNE-TPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSN 630
           P+  IL V + +  ++PV   DG    P ++  + L+LS D RV  G     F   L   
Sbjct: 181 PEVAILGVSKAS--MQPV--WDGKAFQPRLM--LPLSLSYDCRVINGAAAARFTKRLGDL 234
Query: 631 FSDIRRLLL 639
            +DIR +LL
Sbjct: 235 LADIRAILL 243

>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 395 VSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXXXXXXXXXXXXFRKELK 454
           ++PG +  LE+           +R++I  ++ ++KQ  PH                   K
Sbjct: 1   MAPGREEILEMHG---------LRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK 51
Query: 455 EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPI 514
            + N KV+V   + + V   LK  P  NA +D  +   +L    +I IAV T  GL   +
Sbjct: 52  AR-NRKVTVTGFLARIVPSILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFV 110
Query: 515 VRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQA 574
           +++AD+KS+  IS E+ + A +AR  KL   E Q  TF+I+N+G         IIN P+ 
Sbjct: 111 IKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEV 170
Query: 575 GILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
            IL V R       ++  +G +       M L+LS DHR+ +G V   F   L
Sbjct: 171 AILGVHR-------ILEREGRKY------MYLSLSCDHRLIDGAVATRFIVDL 210

>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 15/168 (8%)
Query: 466 IVIKAVAVALKNVPEANAYWDVEKGE---IVLCDAIDISIAVATEKGLMTPIVRNADQKS 522
           + ++ + +ALK+    N+ W V+ GE   + +   + +    ATE+GL+ P+V +A  K+
Sbjct: 70  LTLRLLVIALKHNVILNSTW-VDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKN 128
Query: 523 ISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRG 582
              ++  V EL   AR G L P E +G TF++SN G   VD    +IN P+A IL +G  
Sbjct: 129 TRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVINHPEAAILGLG-- 186
Query: 583 NQVVEP---VIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
              ++P   V+G +    P     M LT   DHRV +G     F   L
Sbjct: 187 --AIKPRPVVVGGEVVARP----TMTLTCVFDHRVVDGAQVAQFMCEL 228

>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 116/264 (43%), Gaps = 17/264 (6%)
Query: 379 HTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHXXXX 438
           H E   P P P+  T   P SK  + +     + P     K + + +  +    PH    
Sbjct: 2   HAEIMPPPPKPKDRTIPIPISKPPVFIGKDRTE-PVKGFHKAMVKTM-SAALKIPHFGYC 59
Query: 439 XXXXXXXXXXFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLC 495
                      R+ELK        K+S     +KA ++ L   P  NA  D     I   
Sbjct: 60  DEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYK 119
Query: 496 DAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSIS 555
            + +I IA+ TE+GL+ P V+N   +SI  I+ E+  L +   AG+L+ ++  GGTF++S
Sbjct: 120 ASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLS 179
Query: 556 NLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVF 615
           N+G         +I PP+  I A+G    +  P     G    A +  MN++ SADHR+ 
Sbjct: 180 NIGSIGGTYAKPVILPPEVAIGALGTIKAL--PRFNEKGEVCKAQI--MNVSWSADHRII 235
Query: 616 EGKVGGAFFSALCSNFSDIRRLLL 639
           +G        A  S FS++ +  L
Sbjct: 236 DG--------ATVSRFSNLWKSYL 251

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
           +P +   + +G I KW  K GD++   D+LCE++ DKA VE  S  +G + +ILVPEG+
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT 64

>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 215 LEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEG 274
            ++P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG
Sbjct: 4   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 63
Query: 275 SKDVAVGQPIAITVEDPG 292
           +    VGQ + IT++ PG
Sbjct: 64  TV-ATVGQTL-ITLDAPG 79

>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +   +++G I +W  KEGD +E    L E+ TDK TV+  S   G + KIL  EG +
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREG-Q 64
Query: 151 DVPVGQPI 158
            VPVG  +
Sbjct: 65  VVPVGSTL 72

>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/184 (20%), Positives = 71/184 (38%), Gaps = 8/184 (4%)
Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATE---- 507
            LK     K+S   ++  A+  A+K  P  N ++ V  G+         ++ +A +    
Sbjct: 32  HLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGK 91
Query: 508 ---KGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ 564
              + L+   ++  +           +++  +AR GKL   +F G T S++N G      
Sbjct: 92  DGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVH 151
Query: 565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKM-NLTLSADHRVFEGKVGGAF 623
               +   Q  I+  G      E    S+       + K+  LT + DHR+ +G   G F
Sbjct: 152 SVPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDF 211
Query: 624 FSAL 627
              +
Sbjct: 212 LRTI 215

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS 149
           +P L  +++   +A W KK GD +   ++L EIETDK  +E  +  +G L  +L  EG+
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65

>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS 275
           +P L  ++    +A W K  GD +   +V+ EIETDK  LE     +G L  +L  EG+
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	639
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	1e-111
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	2e-99
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	8e-18
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	2e-80
2ii3_A	262	Lipoamide acyltransferase component of branched-C	5e-71
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	3e-69
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	3e-42
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	1e-68
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	2e-66
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	9e-62
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	1e-52
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	6e-51
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	3e-45
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	1e-49
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	1e-44
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	7e-49
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	4e-45
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	6e-44
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	5e-40
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	2e-34
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	1e-30
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	5e-25
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	7e-16
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	6e-14
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	1e-15
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	5e-13
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	1e-14
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	3e-13
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	2e-14
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	3e-13
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	2e-09
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	4e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	4e-08
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	6e-08
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	6e-08
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	6e-08
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	2e-06
3rnm_E	58	Lipoamide acyltransferase component of branched-C	1e-05
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	2e-05
2coo_A	70	Lipoamide acyltransferase component of branched- c	2e-05
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	3e-05
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	5e-05
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	6e-05
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	7e-05
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	2e-04
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	7e-04

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239

 Score =  333 bits (856), Expect = e-111
 Identities = 111/236 (47%), Positives = 146/236 (61%), Gaps = 7/236 (2%)

Query: 406 SDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE--KHNTKVSV 463
           +  F D P + IR+VIA+RL++SKQ  PH YLS DV +  +L  RKEL +  +  +K+SV
Sbjct: 9   TGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISV 68

Query: 464 NDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSI 523
           ND +IKA A+A   VPEAN+ W      I     +D+S+AV+T  GL+TPIV NA  K +
Sbjct: 69  NDFIIKASALACLKVPEANSSWMDTV--IRQNHVVDVSVAVSTPAGLITPIVFNAHIKGV 126

Query: 524 SAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGN 583
             I+ +V  LA KAR GKL PHEFQGGTF+ISNLGMF +  F AIINPPQA ILA+G   
Sbjct: 127 ETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNFSAIINPPQACILAIGASE 186

Query: 584 QVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
             + P    D  +   V + M++TLS DHRV +G VG  + +           +LL
Sbjct: 187 DKLVPA---DNEKGFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL 239

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score =  309 bits (794), Expect = 2e-99
 Identities = 123/438 (28%), Positives = 208/438 (47%), Gaps = 33/438 (7%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG+ 
Sbjct: 7   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 66

Query: 277 DVAVGQPIAITVEDPGDVGTV------------KNSVTSGAEVKGEKETHHDSKDVVKVQ 324
              VGQ +  T++ PG                 + + T   E K +    +      +  
Sbjct: 67  -ATVGQTLI-TLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAG 124

Query: 325 KGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTS 384
                   PS +    E G+D   +Q +G  G +LK D+ A +  G   +  ++  +   
Sbjct: 125 PNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAP 184

Query: 385 PSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLD 444
            +  P T+    P                 + IR+ IA+ ++ SK   PH+ L  +  + 
Sbjct: 185 AAAKPATTEGEFPE-----------TREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVT 233

Query: 445 PLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDIS 501
            L++ RK+ K    +   K++    V+KA+  AL+  P  N   D E  EI+     +I 
Sbjct: 234 KLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIG 293

Query: 502 IAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFP 561
           IA  T++GL+ P++++AD+K I A++ E+ ELAEKAR GKL P E +G + +I+N+G   
Sbjct: 294 IAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAG 353

Query: 562 VDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGG 621
              F  +IN P+  IL +GR     +P++  DG    A +  + L+LS DHR+ +G    
Sbjct: 354 GQWFTPVINHPEVAILGIGRI--AEKPIV-RDGEIVAAPM--LALSLSFDHRMIDGATAQ 408

Query: 622 AFFSALCSNFSDIRRLLL 639
              + +    SD   LL+
Sbjct: 409 KALNHIKRLLSDPELLLM 426

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 85.4 bits (212), Expect = 8e-18
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
             +P +   + +G I KW  K GD++   D+LCE++ DKA VE  S  +G + +ILVPEG
Sbjct: 5   FKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEG 64

Query: 149 SKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSE 208
           +    VGQ +        +           A+ +E++ T    +K      +A       
Sbjct: 65  TV-ATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEA 123

Query: 209 LPPRVVLEMPA 219
            P R V+ MP+
Sbjct: 124 GPNRRVIAMPS 134

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250

 Score =  254 bits (650), Expect = 2e-80
 Identities = 66/250 (26%), Positives = 105/250 (42%), Gaps = 13/250 (5%)

Query: 392 STAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRK 451
           S A + G           +  P   +   +A ++  S +  P    S +V+   LL  R 
Sbjct: 2   SLAAARGGVGAGP-----DVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRD 56

Query: 452 ELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWD--VEKGEIVLCDAIDISIAVATEKG 509
                   +++   + ++ + +ALK+    N+ W    E  ++ +   + +    ATE+G
Sbjct: 57  RFVS-AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGPQVHVHRGVHLGFGAATERG 115

Query: 510 LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAII 569
           L+ P+V +A  K+   ++  V EL   AR G L P E +G TF++SN G   VD    +I
Sbjct: 116 LLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVI 175

Query: 570 NPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCS 629
           N P+A IL +G       PV+   G         M LT   DHRV +G     F   L  
Sbjct: 176 NHPEAAILGLGAIKP--RPVV-VGGEVVARPT--MTLTCVFDHRVVDGAQVAQFMCELRD 230

Query: 630 NFSDIRRLLL 639
                   LL
Sbjct: 231 LIESPETALL 240

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262

 Score =  229 bits (586), Expect = 5e-71
 Identities = 76/265 (28%), Positives = 117/265 (44%), Gaps = 9/265 (3%)

Query: 378 SHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYL 437
            H E   P P P+  T   P SK            P     K + + +  + +  PH   
Sbjct: 1   GHAEIMPPPPKPKDRTIPIPISKPP-VFIGKDRTEPVKGFHKAMVKTMSAALK-IPHFGY 58

Query: 438 SSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVL 494
             +V L  L+  R+ELK        K+S     +KA ++ L   P  NA  D     I  
Sbjct: 59  CDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITY 118

Query: 495 CDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSI 554
             + +I IA+ TE+GL+ P V+N   +SI  I+ E+  L +   AG+L+ ++  GGTF++
Sbjct: 119 KASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTL 178

Query: 555 SNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRV 614
           SN+G         +I PP+  I A+G       P     G    A +  MN++ SADHR+
Sbjct: 179 SNIGSIGGTYAKPVILPPEVAIGALGTI--KALPRFNEKGEVCKAQI--MNVSWSADHRI 234

Query: 615 FEGKVGGAFFSALCSNFSDIRRLLL 639
            +G     F +   S   +   +LL
Sbjct: 235 IDGATVSRFSNLWKSYLENPAFMLL 259

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243

 Score =  222 bits (568), Expect = 1e-68
 Identities = 78/233 (33%), Positives = 117/233 (50%), Gaps = 8/233 (3%)

Query: 410 EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDI 466
           E+ P T++ ++ A  L  S  N PH+       +  L +FR   K   EK   K++V  +
Sbjct: 16  EEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPL 75

Query: 467 VIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAI 526
           ++KA A  LK +P+ N+        ++    + I  AV T  GL+ P++RN DQKS+  +
Sbjct: 76  LLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQL 135

Query: 527 SMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVV 586
           + E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N P+  IL V +    +
Sbjct: 136 AAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKA--SM 193

Query: 587 EPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           +PV        P ++  + L+LS D RV  G     F   L    +DIR +LL
Sbjct: 194 QPVW-DGKAFQPRLM--LPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224

 Score =  216 bits (552), Expect = 2e-66
 Identities = 67/228 (29%), Positives = 105/228 (46%), Gaps = 16/228 (7%)

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVA 472
               +R++I  ++ ++KQ  PH  +  +V +  ++S     K   N KV+V   + + V 
Sbjct: 10  EMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAK-ARNRKVTVTGFLARIVP 68

Query: 473 VALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKE 532
             LK  P  NA +D  +   +L    +I IAV T  GL   ++++AD+KS+  IS E+ +
Sbjct: 69  SILKQYPYLNAIYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISD 128

Query: 533 LAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGR-GNQVVEPVIG 591
            A +AR  KL   E Q  TF+I+N+G         IIN P+  IL V R   +       
Sbjct: 129 KASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVAILGVHRILEREGRKY-- 186

Query: 592 SDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
                       M L+LS DHR+ +G V   F   L     D   ++ 
Sbjct: 187 ------------MYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIY 222

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256

 Score =  205 bits (523), Expect = 9e-62
 Identities = 87/252 (34%), Positives = 137/252 (54%), Gaps = 18/252 (7%)

Query: 390 QTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSF 449
           + +    P   +  +     ++ P   +RK IA+ +  SKQ  PH ++  +V    L+ +
Sbjct: 4   KAAMPTPPVRSAAGD-----KEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRY 58

Query: 450 RKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVA 505
           R  +K+    +    ++     IKAVA ALK  P+ N+ W  +  +I+    I+ISIA+A
Sbjct: 59  RNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGD--KIIEHANINISIAIA 116

Query: 506 TEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565
               L  P+++NAD+KSI  I+ E+ ELA KAR GKL+  + +GGTF++++ G F   Q 
Sbjct: 117 AGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGSVQS 176

Query: 566 CAIINPPQAGILAVGRGNQVVE-PVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFF 624
             IIN PQA IL V     +V+ PVI    ++  AV   +NL LS DHR+ +G + G F 
Sbjct: 177 MGIINHPQAAILQVES---IVKRPVI---IDDMIAVRDMVNLCLSIDHRILDGLLAGKFL 230

Query: 625 SALCSNFSDIRR 636
            A+ +N   I +
Sbjct: 231 QAIKANVEKISK 242

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233

 Score =  180 bits (458), Expect = 1e-52
 Identities = 84/239 (35%), Positives = 127/239 (53%), Gaps = 27/239 (11%)

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVI 468
           P T++RK +A RLLE+K +T  L   ++V + P++  RK+  E    +H  ++      +
Sbjct: 8   PMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYV 67

Query: 469 KAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISM 528
           KAV  ALK  PE NA   ++  ++V  +  D+S+AV+T +GL+TP++R+ D   ++ I  
Sbjct: 68  KAVVEALKRYPEVNAS--IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEK 125

Query: 529 EVKELAEKARAGKLAPHEFQGGTFSISNLGMF------PVDQFCAIINPPQAGILAVGRG 582
           ++KELA K R GKL   +  GG F+I+N G+F      P      IINPPQ+ IL  G  
Sbjct: 126 KIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTP------IINPPQSAIL--GMH 177

Query: 583 NQVVEPVIGSDGNETPAVVTK--MNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
                P+   +G     V     M L LS DHR+ +G+    F   +     D  RLLL
Sbjct: 178 AIKDRPMA-VNGQ----VEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  171 bits (435), Expect = 6e-51
 Identities = 54/124 (43%), Positives = 71/124 (57%)

Query: 62  VHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILC 121
            H        ++   +F  S  P H  V +PALSPTM+ G + +W KK G+K+  GD+L 
Sbjct: 3   SHHHHHHGMARLENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLA 62

Query: 122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEA 181
           EIETDKAT+ FE  EEG+LAKILVPEG++DVP+G P+ I VE   DI             
Sbjct: 63  EIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTD 122

Query: 182 KEQS 185
            +  
Sbjct: 123 LKPQ 126

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128

 Score =  156 bits (395), Expect = 3e-45
 Identities = 47/113 (41%), Positives = 65/113 (57%)

Query: 200 SASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFE 259
                  S  PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE
Sbjct: 15  ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFE 74

Query: 260 CLEEGYLAKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEKE 312
             EEGYLAKIL PEG++DV +G P+ I VE   D+    +   +       + 
Sbjct: 75  VQEEGYLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLKPQV 127

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  166 bits (423), Expect = 1e-49
 Identities = 47/97 (48%), Positives = 66/97 (68%)

Query: 81  SELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFL 140
           S   S   + MP+LSPTM +GNI KW KKEG+ +  GD LCEIETDKA V  ++ ++G L
Sbjct: 2   SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGIL 61

Query: 141 AKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG 177
           AKI+V EGSK++ +G  I + VE+ +D +H+    +G
Sbjct: 62  AKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVSGPSSG 98

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score =  153 bits (389), Expect = 1e-44
 Identities = 41/96 (42%), Positives = 59/96 (61%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S     + + MP+LSPTM +GNI KW K EG+ +  GD +CEIETDKA +  +  ++G L
Sbjct: 2   SSGSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGIL 61

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVT 302
           AKI+  EGSK++ +G  I + VE+  D   V    +
Sbjct: 62  AKIVVEEGSKNIRLGSLIGLIVEEGEDWKHVSGPSS 97

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  165 bits (419), Expect = 7e-49
 Identities = 56/106 (52%), Positives = 70/106 (66%)

Query: 81  SELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFL 140
           S   S   V +P+LSPTM  G IA+W KKEGDKI  GD++ E+ETDKATV FESLEE ++
Sbjct: 2   SSGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYM 61

Query: 141 AKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSS 186
           AKILV EG++DVP+G  I ITV   +DI+         + A   SS
Sbjct: 62  AKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPSS 107

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108

 Score =  155 bits (393), Expect = 4e-45
 Identities = 51/105 (48%), Positives = 64/105 (60%)

Query: 207 SELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYL 266
           S       + +P+LSPTM  G IA+W K EGDKI  GD+I E+ETDKAT+ FE LEE Y+
Sbjct: 2   SSGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYM 61

Query: 267 AKILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSVTSGAEVKGEK 311
           AKIL  EG++DV +G  I ITV  P D+   KN     +   G  
Sbjct: 62  AKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYTLDSSAASGPS 106

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score =  151 bits (382), Expect = 6e-44
 Identities = 50/86 (58%), Positives = 63/86 (73%)

Query: 83  LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
            P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETD AT+ FE  EEG+LAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK 61

Query: 143 ILVPEGSKDVPVGQPIAITVEDADDI 168
           ILVPEG++DVP+G P+ I VE   DI
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADI 87

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87

 Score =  140 bits (354), Expect = 5e-40
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
            PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETD AT+ FE  EEGYLAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAK 61

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDV 294
           IL PEG++DV +G P+ I VE   D+
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADI 87

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219

 Score =  129 bits (326), Expect = 2e-34
 Identities = 26/209 (12%), Positives = 47/209 (22%), Gaps = 19/209 (9%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
                     +  + +   L   K        K       I  +A  +   PE       
Sbjct: 26  QSVAQCTYNQTVQLDITAFLKTVK------KNKHKFYPAFIHILARLMNAHPEFRMAMK- 78

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHE 546
             GE+V+ D++     V  E+      + +              +            P  
Sbjct: 79  -DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKG 137

Query: 547 FQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606
           F    F +S         F   +         V    +                   M L
Sbjct: 138 FIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT----QGDK------VLMPL 187

Query: 607 TLSADHRVFEGKVGGAFFSALCSNFSDIR 635
            +   H V +G   G   + L     + +
Sbjct: 188 AIQVHHAVCDGFHVGRMLNELQQYCDEWQ 216

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213

 Score =  118 bits (297), Expect = 1e-30
 Identities = 28/211 (13%), Positives = 62/211 (29%), Gaps = 20/211 (9%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
             +      L+S + +  L           ++      ++I  +A A+    E       
Sbjct: 21  RHRLPCGFSLTSKIDITTLKKSLD------DSAYKFYPVMIYLIAQAVNQFDELRMAIK- 73

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHE 546
              E+++ D++D    V  ++      +       I    +    + E+ ++   L P  
Sbjct: 74  -DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQG 132

Query: 547 FQGG-TFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMN 605
                  +IS L     D F   +                  P+I     +       + 
Sbjct: 133 VTPENHLNISALPWVNFDSFNLNVANFTDYFA----------PIITMAKYQQEGDRLLLP 182

Query: 606 LTLSADHRVFEGKVGGAFFSALCSNFSDIRR 636
           L++   H V +G     F + L    +   +
Sbjct: 183 LSVQVHHAVCDGFHVARFINRLQELCNSKLK 213

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217

 Score =  102 bits (255), Expect = 5e-25
 Identities = 31/210 (14%), Positives = 56/210 (26%), Gaps = 30/210 (14%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
                P L ++S+V         K          S     + AV  A   +PE     D 
Sbjct: 23  RHFQNPQLSITSEVECGGARQRAKA------AGQSFFLHYLYAVLRAANEIPEFRYRIDP 76

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEK-------ARAG 540
           + G +VL D ID+   +  ++       R            E + + +          A 
Sbjct: 77  D-GRVVLYDTIDMLSPIKIKENGKFFTTRFPYHNDFDTFYQEARLIIDAIPEDGDPYAAE 135

Query: 541 KLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAG---ILAVGRGNQVVEPVIGSDGNET 597
                +   G   +S                       +L  G+        I  +G   
Sbjct: 136 NEEVADGDYGLILLSATPDLYFTSITGTQEKRSGNNYPLLNAGK-------AIIREGR-- 186

Query: 598 PAVVTKMNLTLSADHRVFEGKVGGAFFSAL 627
                 M + ++  H   +G     F+  +
Sbjct: 187 ----LVMPIAMTIHHGFIDGHHLSLFYKKV 212

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 71.9 bits (177), Expect = 7e-16
 Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +   +++G I +W  KEGD +E    L E+ TDK TV+  S   G + KIL  EG  
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

Query: 151 DVPVGQPIAI 160
            VPVG  +  
Sbjct: 66  -VPVGSTLLQ 74

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77

 Score = 66.1 bits (162), Expect = 6e-14
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +   + +G I +W   EGD +E    + E+ TDK T++      G + KIL  EG  
Sbjct: 6   LPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV 65

Query: 277 DVAVGQPIAI 286
            V VG  +  
Sbjct: 66  -VPVGSTLLQ 74

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +  +   + +  + +W  KEGD +   D +CE+++DKA+V   S  +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 151 DVPVGQPIA-ITVEDADDIQH 170
              VG+P+  I  E   D++H
Sbjct: 69  -AYVGKPLVDIETEALKDLEH 88

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +  +   + +  + +W   EGD +   D ICE+++DKA++      +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 277 DVAVGQPIA-ITVEDPGDV 294
              VG+P+  I  E   D+
Sbjct: 69  -AYVGKPLVDIETEALKDL 86

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           +  P    +++ G +A W KK G+ ++  +++ +IETDK  +E  +  +G +A+I+  EG
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63

Query: 149 SKDVPVGQPIAITVEDA 165
              V  G+ +    E  
Sbjct: 64  D-TVLSGELLGKLTEGG 79

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
            P    ++  G +A W K  G+ ++  ++I +IETDK  +E     +G +A+I+  EG  
Sbjct: 6   APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD- 64

Query: 277 DVAVGQPIAI 286
            V  G+ +  
Sbjct: 65  TVLSGELLGK 74

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 67.7 bits (166), Expect = 2e-14
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           + +P L  +++   +A W KK GD +   ++L EIETDK  +E  +  +G L  +L  EG
Sbjct: 5   ILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEG 64

Query: 149 SKDVPVGQPIAITVE 163
           +  V   Q +    E
Sbjct: 65  T-TVTSRQILGRLRE 78

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 64.6 bits (158), Expect = 3e-13
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P L  ++    +A W K  GD +   +V+ EIETDK  LE     +G L  +L  EG+ 
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT- 65

Query: 277 DVAVGQPIAITVE 289
            V   Q +    E
Sbjct: 66  TVTSRQILGRLRE 78

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 38/179 (21%), Positives = 71/179 (39%), Gaps = 8/179 (4%)

Query: 453 LKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGE--IVLCDAIDISIAVATEKG- 509
           LK     K+S   ++  A+  A+K  P  N ++ V  G+   +     ++ +A+  +   
Sbjct: 33  LKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAHTNLGLAIDLQGKD 92

Query: 510 ----LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF 565
               L+   ++  +           +++  +AR GKL   +F G T S++N G       
Sbjct: 93  GNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHS 152

Query: 566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTK-MNLTLSADHRVFEGKVGGAF 623
              +   Q  I+  G      E    S+       + K + LT + DHR+ +G   G F
Sbjct: 153 VPRLMQGQGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDF 211

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K Length = 64

 Score = 49.4 bits (117), Expect = 4e-08
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSH 379
           ++SP+A+ ++ +H LDAS   A+GP G   K D L  ++  K + +I  H
Sbjct: 11  RLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQ-LKQTGKILEH 59

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 50.0 bits (120), Expect = 4e-08
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G + ++   +G  +E G    E+E  K  +     E G + K +   G+  +  G  +A
Sbjct: 13  AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVA 70

Query: 286 -ITVEDPGDV 294
            + ++D    
Sbjct: 71  RLELDDLEHH 80

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84

 Score = 49.6 bits (119), Expect = 6e-08
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 3/73 (4%)

Query: 99  SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
           S G + ++  ++G  +E G    E+E  K  +     E G + K +   G+  +  G  +
Sbjct: 12  SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVV 69

Query: 159 A-ITVEDADDIQH 170
           A + ++D +   H
Sbjct: 70  ARLELDDLEHHHH 82

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A Length = 51

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 14/48 (29%), Positives = 28/48 (58%)

Query: 323 VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370
           +++ +   +SP+ + L+ EH LDAS+++ +G  G L + DV   +   
Sbjct: 4   LEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKA 51

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 50.1 bits (120), Expect = 6e-08
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G + ++   +G  +E G    E+E  K  +     E G + K +   G+  +  G  +A
Sbjct: 25  AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVVA 82

Query: 286 -ITVEDPGDV 294
            + ++DP  V
Sbjct: 83  RLELDDPSKV 92

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 3/73 (4%)

Query: 99  SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPI 158
           S G + ++  ++G  +E G    E+E  K  +     E G + K +   G+  +  G  +
Sbjct: 24  SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRV-KYIKRPGAV-LEAGCVV 81

Query: 159 A-ITVEDADDIQH 170
           A + ++D   +  
Sbjct: 82  ARLELDDPSKVHP 94

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 3e-07
 Identities = 76/492 (15%), Positives = 146/492 (29%), Gaps = 129/492 (26%)

Query: 122 EIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAG---- 177
           + ET +   +++ +   F    +     KDV       ++ E+ D I      ++G    
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 178 -GAEAKEQSSTHQDVKKEAVQETS---ASRINTSELPPRVVLEM--PALSPTMNQGNI-A 230
                 +Q    Q   +E ++       S I T +  P ++  M         N   + A
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 231 K---WRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA--------K-ILAPEGSKDV 278
           K    R     K+            +A LE        +         K  +A +     
Sbjct: 128 KYNVSRLQPYLKLR-----------QALLELR--PAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 279 AVGQPIA-----ITV---EDPGDVGTVKNSVTSGAEVKGEKETHHDSK-----DVVKVQK 325
            V   +      + +     P  V  +   +    +      + H S        ++ + 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 326 GSFTKISPSAK-LLILEHGLDASSLQASGPYG----TLL----KG--DVLAAIKSGKVSS 374
               K  P    LL+L +  +A +  A   +      LL    K   D L+A  +  +S 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNA---FNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 375 --RISSHTEK-----------TSPSPLPQTSTAVSPGSKSDLELS---DSFEDFPNT--Q 416
                + T               P  LP+     +P       LS   +S  D   T   
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-----RRLSIIAESIRDGLATWDN 346

Query: 417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVI--KAVAVA 474
            + V   +L    +       SS  VL+P      E ++        + + +   +    
Sbjct: 347 WKHVNCDKLTTIIE-------SSLNVLEP-----AEYRKMF------DRLSVFPPSA--- 385

Query: 475 LKNVPEA--NAYWDVEKGEIVLCDAIDISIAVATE---KGLMTPIVRNADQKSIS--AIS 527
             ++P    +  W          D + +      +     L   + +   + +IS  +I 
Sbjct: 386 --HIPTILLSLIWFDVIKS----DVMVV----VNKLHKYSL---VEKQPKESTISIPSIY 432

Query: 528 MEVKELAEKARA 539
           +E+K   E   A
Sbjct: 433 LELKVKLENEYA 444

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 70/548 (12%), Positives = 145/548 (26%), Gaps = 197/548 (35%)

Query: 6   LRQP-VIARTLSLFRARLSLSSFSSSTSLARISSGKNSFVDVNGILLRP----LSSTLAP 60
           +     ++ TL LF            T L++       FV+    +LR     L S +  
Sbjct: 55  IMSKDAVSGTLRLF-----------WTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKT 100

Query: 61  EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDIL 120
           E     +  +M      +       +            ++ N+   R +   K+     L
Sbjct: 101 EQRQPSMMTRM------YIEQRDRLYNDN------QVFAKYNV--SRLQPYLKLRQA--L 144

Query: 121 CEIETDKATVEFESLE--EGFLAK-ILVPEGSKDVPVGQPIA-----ITV---EDADDI- 168
            E+   K  +    ++   G   K  +  +      V   +      + +      + + 
Sbjct: 145 LELRPAKNVL----IDGVLGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199

Query: 169 ---QHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPR--VVLEMPALSPT 223
              Q +   I     ++   S++  ++  ++Q     R+  S+      +VL        
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA-ELRRLLKSKPYENCLLVL-------- 250

Query: 224 MNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQP 283
                               +V    +   A     C       KIL             
Sbjct: 251 --------------L-----NV-QNAKAWNA-FNLSC-------KIL------------- 269

Query: 284 IAITVEDPGDVGTVKNSVTSGAEVKGEKETHHDSKDVVKVQKGSFTKISPSAKLLILEHG 343
             +T        T    VT    +     TH     +        T       LL+    
Sbjct: 270 --LT--------TRFKQVTDF--LSAATTTH---ISLDHHSMT-LTP-DEVKSLLLKYLD 312

Query: 344 LDASSL--QASG--PY-----GTLLKGDV-----LAAIKSGKVSSRISSHTEKTSPSPLP 389
                L  +     P         ++  +        +   K+++ I S      P+   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA--- 369

Query: 390 QTSTAVSPGSKSDLELSDSFED---FP-NTQI-RKVIA--------------------RR 424
                         E    F+    FP +  I   +++                      
Sbjct: 370 --------------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 425 LLE--SKQNT---PHLYLSSDVVLDPLLSFRKELKEKHNT--KVSVNDIVIKAVAVALKN 477
           L+E   K++T   P +YL   V L+   +  + + + +N       +D++          
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP--------- 466

Query: 478 VPEANAYW 485
            P  + Y+
Sbjct: 467 -PYLDQYF 473

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus} Length = 40

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 332 SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
            P+A+ L+ E G+  + +Q +G  G +LK DV+  ++
Sbjct: 3   MPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHLE 39

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} PDB: 1zwv_A Length = 58

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 325 KGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSS 374
           KG  T  +P+ + L +E+ +  S +  SG  G +LK D+L  ++   +  
Sbjct: 4   KGRKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLEH 53

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
           K GDK+     L  +E DKA++E  +   G + ++ V  G K V  G  I I
Sbjct: 19  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMI 69

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens} Length = 70

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 324 QKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISS 378
            KG  T  +P+ + L +E+ +  S +  SG  G +LK D+L  ++    +    S
Sbjct: 11  IKGRKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPS 65

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79

 Score = 41.8 bits (99), Expect = 3e-05
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDI 168
           K GD IE+   L  +E+ KA++E  S + G +  + V  G K +  G  I I +E A   
Sbjct: 21  KTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAI-IELEPAAGA 78

Query: 169 Q 169
           +
Sbjct: 79  R 79

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAI 160
           K GDK+     L  +E DKA++E  +   G + ++ V  G K V  G  I I
Sbjct: 23  KVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMI 73

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A Length = 62

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 12/55 (21%), Positives = 25/55 (45%)

Query: 332 SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSGKVSSRISSHTEKTSPS 386
            P+A+ L  E G+D S ++ +GP G +   DV    +    ++  +   +    +
Sbjct: 8   MPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETAKATAPAPAPKAVEKA 62

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 109 KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADD 167
             GD I + D L  +ETDKAT++  +   G + ++ V  G K +  G  I   VE    
Sbjct: 24  NVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIV-VVEAEGT 80

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C* Length = 49

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 332 SPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG 370
            PS +    E G+D   +Q +G  G +LK D+ A +  G
Sbjct: 10  MPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGG 48

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Length = 1236

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 31/126 (24%), Positives = 43/126 (34%), Gaps = 7/126 (5%)

Query: 163  EDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSP 222
            E+ D I        GG +A E +   Q    E  +       +  E P          S 
Sbjct: 1118 ENIDSIVAFQEA-QGGEKADEFARLIQVANAELKKSGDDKPQDVEEYPDD---AELLYSE 1173

Query: 223  TMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQ 282
                G   K     GD +E GD +  IE  K  +     + G + KIL   G   V  G 
Sbjct: 1174 -YT-GRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGD 1230

Query: 283  PIAITV 288
             +A+ V
Sbjct: 1231 LVAVIV 1236

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	639
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	100.0
1dpb_A	243	Dihydrolipoyl-transacetylase; dihydrolipoamide ace	100.0
3l60_A	250	Branched-chain alpha-keto acid dehydrogenase; stru	100.0
3mae_A	256	2-oxoisovalerate dehydrogenase E2 component, dihyd	100.0
1scz_A	233	E2, dihydrolipoamide succinyltransferase; COA-depe	100.0
2ii3_A	262	Lipoamide acyltransferase component of branched-C	100.0
3rqc_A	224	Probable lipoamide acyltransferase; alpha beta fol	100.0
3b8k_A	239	PDCE2;, dihydrolipoyllysine-residue acetyltransfer	100.0
1q23_A	219	Chloramphenicol acetyltransferase; CAT I, trimer,	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
3cla_A	213	Type III chloramphenicol acetyltransferase; transf	100.0
2i9d_A	217	Chloramphenicol acetyltransferase; structural geno	100.0
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.94
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.78
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.76
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.74
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.73
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.71
1y8o_B	128	Dihydrolipoyllysine-residue acetyltransferase COM	99.68
2dne_A	108	Dihydrolipoyllysine-residue acetyltransferase comp	99.67
2dnc_A	98	Pyruvate dehydrogenase protein X component; lipoic	99.67
3crk_C	87	Dihydrolipoyllysine-residue acetyltransferase COM	99.66
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.64
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	99.64
1zy8_K	229	Pyruvate dehydrogenase protein X component, mitoch	99.61
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.61
1k8m_A	93	E2 component of branched-chain ahpha-ketoacid dehy	99.6
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.6
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.59
1ghj_A	79	E2, E2, the dihydrolipoamide succinyltransferase c	99.58
1pmr_A	80	Dihydrolipoyl succinyltransferase; 2-oxoglutarate	99.54
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.53
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.51
2l5t_A	77	Lipoamide acyltransferase; E2 lipoyl domain; NMR {	99.5
1qjo_A	80	Dihydrolipoamide acetyltransferase; lipoyl domain,	99.48
1iyu_A	79	E2P, dihydrolipoamide acetyltransferase component	99.45
1gjx_A	81	Pyruvate dehydrogenase; oxidoreductase, lipoyl dom	99.41
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.39
2k7v_A	85	Dihydrolipoyllysine-residue acetyltransferase comp	99.36
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.29
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.27
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.27
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.22
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	99.15
2kcc_A	84	Acetyl-COA carboxylase 2; biotinoyl domain, BCCP,	99.15
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	99.14
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	99.13
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.12
1z6h_A	72	Biotin/lipoyl attachment protein; solution structu	99.11
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	99.08
1bdo_A	80	Acetyl-COA carboxylase; BCCPSC, carboxyl transfera	99.07
2jku_A	94	Propionyl-COA carboxylase alpha chain, mitochondri	99.04
2dn8_A	100	Acetyl-COA carboxylase 2; biotin required enzyme,	99.03
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.98
2eq9_C	41	Pyruvate dehydrogenase complex, dihydrolipoamide a	98.96
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	98.96
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	98.96
3rnm_E	58	Lipoamide acyltransferase component of branched-C	98.95
2eq8_C	40	Pyruvate dehydrogenase complex, dihydrolipoamide a	98.94
3va7_A	1236	KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A	98.93
2ejm_A	99	Methylcrotonoyl-COA carboxylase subunit alpha; bio	98.93
2eq7_C	40	2-oxoglutarate dehydrogenase E2 component; protein	98.91
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.91
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.9
1w85_I	49	Dihydrolipoyllysine-residue acetyltransferase comp	98.85
1bal_A	51	Dihydrolipoamide succinyltransferase; glycolysis;	98.84
3n6r_A	681	Propionyl-COA carboxylase, alpha subunit; protein	98.81
3u9t_A	675	MCC alpha, methylcrotonyl-COA carboxylase, alpha-s	98.75
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	98.72
1w4i_A	62	Pyruvate dehydrogenase E2; transferase, peripheral	98.72
2f60_K	64	Pyruvate dehydrogenase protein X component; protei	98.71
2coo_A	70	Lipoamide acyltransferase component of branched- c	98.68
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.68
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.67
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.6
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.56
2k32_A	116	A; NMR {Campylobacter jejuni} PDB: 2k33_A*	98.44
1zko_A	136	Glycine cleavage system H protein; TM0212, structu	98.42
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	98.4
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	98.34
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	98.24
1hpc_A	131	H protein of the glycine cleavage system; transit	98.2
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	98.18
1hpc_A	131	H protein of the glycine cleavage system; transit	97.99
3a7l_A	128	H-protein, glycine cleavage system H protein; lipo	97.97
1onl_A	128	Glycine cleavage system H protein; hybrid barrel-s	97.9
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.7
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.63
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.62
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.61
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.56
3mxu_A	143	Glycine cleavage system H protein; seattle structu	97.44
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	97.37
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	97.27
2f1m_A	277	Acriflavine resistance protein A; helical hairpin,	97.24
3lnn_A	359	Membrane fusion protein (MFP) heavy metal cation Z	97.22
3ne5_B	413	Cation efflux system protein CUSB; transmembrane h	97.2
3klr_A	125	Glycine cleavage system H protein; antiparallel be	97.18
3fpp_A	341	Macrolide-specific efflux protein MACA; hexameric	97.12
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	97.1
3mxu_A	143	Glycine cleavage system H protein; seattle structu	96.99
3tzu_A	137	GCVH, glycine cleavage system H protein 1; ssgcid,	96.88
1vf7_A	369	Multidrug resistance protein MEXA; alpha hairpin,	96.77
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	96.76
4dk0_A	369	Putative MACA; alpha-hairpin, lipoyl, beta-barrel,	96.53
3hgb_A	155	Glycine cleavage system H protein; ssgcid, niaid,	96.51
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	95.92
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.87
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	95.5
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	95.21
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	94.99
3na6_A	331	Succinylglutamate desuccinylase/aspartoacylase; st	94.63
3cdx_A	354	Succinylglutamatedesuccinylase/aspartoacylase; str	94.17
3fmc_A	368	Putative succinylglutamate desuccinylase / aspart;	94.02
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	93.45
3lu0_D	1407	DNA-directed RNA polymerase subunit beta'; E. coli	92.95
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	92.53
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	91.49
2qj8_A	332	MLR6093 protein; structural genomics, joint center	91.29
1f3z_A	161	EIIA-GLC, glucose-specific phosphocarrier; phospho	90.69
2gpr_A	154	Glucose-permease IIA component; phosphotransferase	89.51
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	89.01
2qj8_A	332	MLR6093 protein; structural genomics, joint center	87.17
1ax3_A	162	Iiaglc, glucose permease IIA domain; phosphotransf	86.8
2xha_A	193	NUSG, transcription antitermination protein NUSG;	86.45
2auk_A	190	DNA-directed RNA polymerase beta' chain; sandwich-	83.74
3d4r_A	169	Domain of unknown function from the PFAM-B_34464;	81.78

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=100.00  E-value=3.6e-88  Score=737.66  Aligned_cols=410  Identities=28%  Similarity=0.429  Sum_probs=39.0

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDPG  292 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~~  292 (639)
                      ++|+||+||++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|.++++
T Consensus         3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~~   81 (428)
T 3dva_I            3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAPGY   81 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecCCc
Confidence            4789999999999999999999999999999999999999999999999999999999999999 999999999987655


Q ss_pred             CcCCcCC-CCCCC---cccC-CCCCCC--CCCcc--ccc--cccCCCccCChhHHhhHHHcCCCcccccccCCCCeeecc
Q 006594          293 DVGTVKN-SVTSG---AEVK-GEKETH--HDSKD--VVK--VQKGSFTKISPSAKLLILEHGLDASSLQASGPYGTLLKG  361 (639)
Q Consensus       293 ~~~~~~~-~~~~~---~~~~-~~~~~~--~~~~~--~~~--~~~~~~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~  361 (639)
                      +..+... .....   +.+. .+.+.+  ...+.  .+.  .......++||+||+||+|+||||+.|+||||+|||+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k~  161 (428)
T 3dva_I           82 ENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKE  161 (428)
T ss_dssp             ----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCTT
T ss_pred             cccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeHH
Confidence            4322110 00000   0000 000000  00000  000  011234579999999999999999999999999999999


Q ss_pred             chHHHHhcCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCcccccCcHHHHHHHHHhhhccCCcceEEeeeee
Q 006594          362 DVLAAIKSGKVSSRISSHTEKTSPSPLPQTSTAVSPGSKSDLELSDSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDV  441 (639)
Q Consensus       362 DV~~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~ev  441 (639)
                      ||++|+....... +..+    +.+  ....|  ..+.  .......++++|+++|||.||++|.+|++++||||++.+|
T Consensus       162 DV~~~~~~~~~~~-~~~~----~~~--~~~~~--~~~~--~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~ev  230 (428)
T 3dva_I          162 DIDAFLAGGAKPA-PAAA----EEK--AAPAA--AKPA--TTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEA  230 (428)
T ss_dssp             TTTTTSCC------------------------------------------------------------------------
T ss_pred             HHHHHhhcccccc-cccc----ccc--cccCC--CCcc--ccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEE
Confidence            9999875321110 0000    000  00001  0000  0011123677899999999999999999999999999999


Q ss_pred             echHHHHHHHHHhh---hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecC
Q 006594          442 VLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNA  518 (639)
Q Consensus       442 Dvt~l~~~rk~~~~---~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a  518 (639)
                      |+|+|+++|+++|.   +.|.++||++||+||+++||++||+||++|+++.++|++|+++||||||++++||++|+|+++
T Consensus       231 Dvt~l~~~rk~~~~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a  310 (428)
T 3dva_I          231 DVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHA  310 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eHHHHHHHHHHhhhhHhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccC
Confidence            99999999999874   468899999999999999999999999999874345999999999999999999999999999


Q ss_pred             CcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCCcceEEEecCceEEEEEeeCCCCCccc
Q 006594          519 DQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETP  598 (639)
Q Consensus       519 ~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~  598 (639)
                      +.++|.+|+++++++.+++|+|+|.++|++||||||||+||||+++|+||||+||++||++|++.++|++.+|     ++
T Consensus       311 ~~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g-----~i  385 (428)
T 3dva_I          311 DRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDG-----EI  385 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECC-----EE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988655     79


Q ss_pred             EEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          599 AVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       599 ~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      ++|++|+|||+||||+|||+|+++||+.|+++||||+.||+
T Consensus       386 ~~r~~m~lsls~DHRviDG~~aa~Fl~~lk~~Le~P~~lll  426 (428)
T 3dva_I          386 VAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM  426 (428)
T ss_dssp             -----------------------------------------
T ss_pred             EEeeeEEEEEEecccccchHHHHHHHHHHHHHHhCHHHHhh
Confidence            99999999999999999999999999999999999999885

>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A

Probab=100.00  E-value=8.1e-58  Score=463.85  Aligned_cols=227  Identities=33%  Similarity=0.439  Sum_probs=216.4

Q ss_pred             CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (639)
Q Consensus       408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likAva~Al~~~P~ln~~  484 (639)
                      .++++|+++|||.||++|.+|++++||||++.+||+|+|+++|+++|+   +.|.++||++|++||+++||++||+||++
T Consensus        14 ~~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   93 (243)
T 1dpb_A           14 EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSS   93 (243)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred             CceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence            456789999999999999999999999999999999999999998874   46789999999999999999999999999


Q ss_pred             eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (639)
Q Consensus       485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~  564 (639)
                      |+++.++|++|+++|||+||++++||++|+|++++.+||.+|+++++++++++|+|+|.++|++||||||||+||+|+++
T Consensus        94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~  173 (243)
T 1dpb_A           94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTA  173 (243)
T ss_dssp             ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCSC
T ss_pred             EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccc
Confidence            98653459999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+||||+||++||++|++.++|++.+|     ++++|++|+|||+||||+|||+|+++||+.|+++||+|..||+
T Consensus       174 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  243 (243)
T 1dpb_A          174 FTPIVNAPEVAILGVSKASMQPVWDGK-----AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             CCCCCCTTSSEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             eECccCCCCCeEEEccccEEEEEEECC-----eEEEEEEEEEEEEECcccccHHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999999988655     7999999999999999999999999999999999999999885

>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0

Probab=100.00  E-value=1.3e-57  Score=462.66  Aligned_cols=220  Identities=27%  Similarity=0.424  Sum_probs=211.8

Q ss_pred             cCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccC--CC
Q 006594          413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE--KG  490 (639)
Q Consensus       413 ~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~--~~  490 (639)
                      |+++|||.||++|.+|++++||||++.+||+|+|+++|+++|+ .|.|+||++|++||+++||++||+||++|+++  .+
T Consensus        18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-~~~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~   96 (250)
T 3l60_A           18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-AAPEITPFALTLRLLVIALKHNVILNSTWVDSGEGP   96 (250)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECTTTSC
T ss_pred             CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHhCHHhhEEEeccCCCC
Confidence            9999999999999999999999999999999999999999964 57799999999999999999999999999764  24


Q ss_pred             eEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccC
Q 006594          491 EIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIIN  570 (639)
Q Consensus       491 ~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~  570 (639)
                      +|++|+++|||+||++++||++|||++++++||.+|+++++++++++|+|+|.++|++||||||||+||+|+++|+||||
T Consensus        97 ~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~~~ftpIin  176 (250)
T 3l60_A           97 QVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDDGVPVIN  176 (250)
T ss_dssp             EEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEECGGGGTCSSCCCCCC
T ss_pred             eEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEcCCCCCcceeEeeeC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594          571 PPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL  638 (639)
Q Consensus       571 ~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll  638 (639)
                      +||++||++|++.++|++.+|     ++++|++|+|||+||||+|||+++++||+.|+++||+|+.|+
T Consensus       177 ppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~l~  239 (250)
T 3l60_A          177 HPEAAILGLGAIKPRPVVVGG-----EVVARPTMTLTCVFDHRVVDGAQVAQFMCELRDLIESPETAL  239 (250)
T ss_dssp             TTCSEEEEECCCEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSHHHHT
T ss_pred             CCCceEEEecceEEEeEEECC-----EEEEEEEeEEEEEecccccCHHHHHHHHHHHHHHHhCHHHHh
Confidence            999999999999999988765     899999999999999999999999999999999999999886

>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}

Probab=100.00  E-value=4.5e-58  Score=467.60  Aligned_cols=225  Identities=37%  Similarity=0.538  Sum_probs=215.4

Q ss_pred             CCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccc
Q 006594          407 DSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEAN  482 (639)
Q Consensus       407 ~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln  482 (639)
                      ...+++|+++|||+||++|.+|++++||||++.+||+|+|+++|+++|+    +.|.++||++|++||+++||++||+||
T Consensus        16 ~~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~N   95 (256)
T 3mae_A           16 AGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLN   95 (256)
T ss_dssp             CSCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTS
T ss_pred             CCceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhh
Confidence            3467899999999999999999999999999999999999999999874    358899999999999999999999999


Q ss_pred             eeeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCc
Q 006594          483 AYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPV  562 (639)
Q Consensus       483 ~~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~  562 (639)
                      ++|++++  |++|++||||+||++++||++|+|+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+
T Consensus        96 a~~~~~~--i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISNlG~~G~  173 (256)
T 3mae_A           96 STWAGDK--IIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSFGS  173 (256)
T ss_dssp             EEEETTE--EEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEECGGGGTC
T ss_pred             hEEecCE--EEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEecCCCCCc
Confidence            9998764  99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhc
Q 006594          563 DQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLL  638 (639)
Q Consensus       563 ~~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll  638 (639)
                      ++|+||||+||++||++|++.++|++.+|     ++++|++|+|||+||||+|||+++|+||+.|+++||+|+.|.
T Consensus       174 ~~ftpIInppq~aIL~vG~i~~~pv~~~g-----~i~~r~~m~lsLs~DHRviDGa~aa~Fl~~lk~~Le~P~~~~  244 (256)
T 3mae_A          174 VQSMGIINHPQAAILQVESIVKRPVIIDD-----MIAVRDMVNLCLSIDHRILDGLLAGKFLQAIKANVEKISKEN  244 (256)
T ss_dssp             SEEECCCCTTSSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTCCTTT
T ss_pred             cceEcccCCCCceEEEecccEEEEEEECC-----EEEEeEEEEEEEEEccccccHHHHHHHHHHHHHHHhChHHHH
Confidence            99999999999999999999999988765     899999999999999999999999999999999999999764

>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A

Probab=100.00  E-value=5.9e-58  Score=462.10  Aligned_cols=224  Identities=37%  Similarity=0.564  Sum_probs=214.0

Q ss_pred             cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (639)
Q Consensus       409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~  484 (639)
                      .+++|+++|||.||++|.+|++++||||++.++|+|+|+++|+++|+    +.|.++||++|++||+++||++||+||++
T Consensus         4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~   83 (233)
T 1scz_A            4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence            34579999999999999999999999999999999999999999874    35789999999999999999999999999


Q ss_pred             eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (639)
Q Consensus       485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~  564 (639)
                      |++++  +++|+++|||+||++++||++|+|++++.+||.+|+++++++++++|+|+|.++|++||||||||+||+|..+
T Consensus        84 ~~~~~--i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~G~~~  161 (233)
T 1scz_A           84 IDGDD--VVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM  161 (233)
T ss_dssp             EETTE--EECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred             EeCCE--EEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEeCCCCCccc
Confidence            98654  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+|||||||++||++|++.++|++.+|     ++++|++|+|||+||||+|||+|+|+||+.|+++||+|..||+
T Consensus       162 ~tpIin~pq~aIl~vG~~~~~pv~~~g-----~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  231 (233)
T 1scz_A          162 STPIINPPQSAILGMHAIKDRPMAVNG-----QVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL  231 (233)
T ss_dssp             CCCCCCTTCSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             eEcccCCCCcEEEEccccEEEEEEECC-----EEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHHHhh
Confidence            999999999999999999999988665     7999999999999999999999999999999999999998764

>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*

Probab=100.00  E-value=4.3e-57  Score=462.55  Aligned_cols=227  Identities=29%  Similarity=0.393  Sum_probs=214.4

Q ss_pred             CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhh---hCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKE---KHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (639)
Q Consensus       408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~---~~g~kls~~~~likAva~Al~~~P~ln~~  484 (639)
                      .++++|+++|||.||++|.+|+ ++||||++.+||+|+|+++|+++|+   +.|.++||++|++||+++||++||+||++
T Consensus        30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~~~~g~kls~~~~~ikAva~Al~~~P~~Na~  108 (262)
T 2ii3_A           30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAFARGIKLSFMPFFLKAASLGLLQFPILNAS  108 (262)
T ss_dssp             CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSEE
T ss_pred             CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhhhhccCCccHHHHHHHHHHHHHHhChHhhEE
Confidence            4677899999999999999996 6999999999999999999999874   46889999999999999999999999999


Q ss_pred             eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (639)
Q Consensus       485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~  564 (639)
                      |+++.++|++|+++|||+||++++||++|+|++++.+||.+|+++++++++++|+|+|.++|++||||||||+||+|.++
T Consensus       109 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISNlG~~G~~~  188 (262)
T 2ii3_A          109 VDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIGGTY  188 (262)
T ss_dssp             ECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEECGGGTCCSC
T ss_pred             EeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEeCCCCCccc
Confidence            98754579999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+||||+||+|||++|++.++|++.+  ||  ++++|.+|+|||+||||+|||+|+++||+.|+++||+|..||+
T Consensus       189 ~tPIinppq~aIL~vG~~~~~pv~~~--~g--~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ll~  259 (262)
T 2ii3_A          189 AKPVILPPEVAIGALGTIKALPRFNE--KG--EVCKAQIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLL  259 (262)
T ss_dssp             EECCCCTTCCEEEEECCCEEEEEECT--TS--CEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHSTHHHHH
T ss_pred             eECccCCCcceEEEcCccEEEEEEec--CC--cEEEEeeeEEEEEECcceecHHHHHHHHHHHHHHHhCHHHHHh
Confidence            99999999999999999999988752  23  7999999999999999999999999999999999999998763

>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}

Probab=100.00  E-value=1.6e-56  Score=449.15  Aligned_cols=217  Identities=32%  Similarity=0.436  Sum_probs=207.8

Q ss_pred             cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccC
Q 006594          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVE  488 (639)
Q Consensus       409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~  488 (639)
                      .+++|+++|||+||++|.+|++++||||++.+||+|+|+++|+++|++ |.|+||++|++||+++||++||+||++|+++
T Consensus         6 ~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-g~kls~~~~~ikA~~~Al~~~P~~N~~~~~~   84 (224)
T 3rqc_A            6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-NRKVTVTGFLARIVPSILKQYPYLNAIYDET   84 (224)
T ss_dssp             CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-TCCCCHHHHHHHHHHHHHHHSGGGSBBCCSS
T ss_pred             ceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHHHHhCHHhheEEeCC
Confidence            567899999999999999999999999999999999999999999765 8899999999999999999999999999887


Q ss_pred             CCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeec
Q 006594          489 KGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAI  568 (639)
Q Consensus       489 ~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pi  568 (639)
                      .++|++|+++|||+||++++||++|+|+++++++|.+|+++++++++++|+|+|.++|++||||||||+||+|+++|+||
T Consensus        85 ~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISnlG~~G~~~~tpi  164 (224)
T 3rqc_A           85 RRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPI  164 (224)
T ss_dssp             TTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEECTTTCCSEEECC
T ss_pred             CCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCcCCccceEec
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          569 INPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       569 i~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      ||+||++||++|++.+++    +         |++|+|||+||||++||+|+++||+.|+++||+|+.||+
T Consensus       165 in~pq~aIl~vG~~~~~p----~---------r~~m~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~  222 (224)
T 3rqc_A          165 INYPEVAILGVHRILERE----G---------RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAIIY  222 (224)
T ss_dssp             CCTTBSEEEEECCCEEET----T---------EEECCEEEEEETTTSCHHHHHHHHHHHHHHHTCTTTTTC
T ss_pred             cCCCCceEEEecccEEEC----C---------ceEEEEEEEeccceecHHHHHHHHHHHHHHHhCHHHHhh
Confidence            999999999999999762    1         789999999999999999999999999999999999875

>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}

Probab=100.00  E-value=9.1e-57  Score=455.52  Aligned_cols=227  Identities=48%  Similarity=0.738  Sum_probs=213.6

Q ss_pred             CcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhh--CCCCcCHHHHHHHHHHHHHhhCcccceee
Q 006594          408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEK--HNTKVSVNDIVIKAVAVALKNVPEANAYW  485 (639)
Q Consensus       408 ~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~--~g~kls~~~~likAva~Al~~~P~ln~~~  485 (639)
                      .++++|+++|||.||++|.+|++++||||++.++|+|+|+++|+++|+.  .+.++||++|++||+++||++||+||++|
T Consensus        11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~~~kls~~~~~ikAv~~Al~~~P~~Na~~   90 (239)
T 3b8k_A           11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEGRSKISVNDFIIKASALACLKVPEANSSW   90 (239)
T ss_dssp             SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTTSSCCCHHHHHHHHHHHHHHHCCCSCTTS
T ss_pred             CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHHHHhChHhhEEE
Confidence            3677899999999999999999999999999999999999999998752  22599999999999999999999999999


Q ss_pred             ccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccce
Q 006594          486 DVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF  565 (639)
Q Consensus       486 ~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~  565 (639)
                      ++++  +++|+++|||+||++++||++|+|++++.++|.+|+++++++++++|+|+|.++|++||||||||+||+|+++|
T Consensus        91 ~~~~--i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISnlG~~g~~~f  168 (239)
T 3b8k_A           91 MDTV--IRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMFGIKNF  168 (239)
T ss_dssp             CCCS--SSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEECCSSCCSSC
T ss_pred             ECCE--EEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCceeE
Confidence            8765  99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       566 ~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +||+|+||++||++|++.++|+++ ++||  ++++|.+|+|||+||||+|||+|+|+||+.|+++||+|+.||+
T Consensus       169 tpiin~pq~aIl~vG~~~~~pv~~-~~~g--~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~le~p~~ll~  239 (239)
T 3b8k_A          169 SAIINPPQACILAIGASEDKLVPA-DNEK--GFDVASMMSVTLSCDHRVVDGAVGAQWLAEFRKYLEKPITMLL  239 (239)
T ss_dssp             CCCCCTTSCCCCEECCCCCSCCCC-CSSS--SCCCCCCEEEEECCCCCSSCHHHHHHHHHHHHHHHHCTHHHHC
T ss_pred             ECcCCCCceEEEECcccEEEEEEE-cCCC--cEEEEEEEEEEEEEcceeechHHHHHHHHHHHHHHhCHHhhhC
Confidence            999999999999999999998774 1233  7999999999999999999999999999999999999998875

>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*

Probab=100.00  E-value=2e-42  Score=345.68  Aligned_cols=194  Identities=13%  Similarity=0.101  Sum_probs=173.0

Q ss_pred             HHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcC
Q 006594          417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCD  496 (639)
Q Consensus       417 ~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~  496 (639)
                      -||.-....  ..+++||||++.+||+|+|+++||+.      ++||++|++||+++||++||+||++|+++  +|++|+
T Consensus        17 ~R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~   86 (219)
T 1q23_A           17 HRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKDG--ELVIWD   86 (219)
T ss_dssp             TTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEES
T ss_pred             CCHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhChHhhEEEECC--EEEEec
Confidence            355455554  34799999999999999999999875      89999999999999999999999999865  499999


Q ss_pred             CccEEEEE-ecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCeEEEEeCCCCCccceeeccCCCc
Q 006594          497 AIDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPPQ  573 (639)
Q Consensus       497 ~v~i~iAV-~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~-~d~~ggtftISnlG~~g~~~~~pii~~p~  573 (639)
                      +||||+|| ++++||++|++.. +.+++.+|+++++++++++|+| +|.+ +|+ ||||||||+||++++.+.+.++++.
T Consensus        87 ~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISnlG~~~ft~i~~~~~~~~  164 (219)
T 1q23_A           87 SVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSANPWVSFTSFDLNVANMD  164 (219)
T ss_dssp             CCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEECTTCCCSEEEEEESCCT
T ss_pred             ccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEcCccccccccccCCCCCc
Confidence            99999999 9999999999986 6789999999999999999998 6976 888 9999999999998777776665543


Q ss_pred             ---ceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchh
Q 006594          574 ---AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIR  635 (639)
Q Consensus       574 ---~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~  635 (639)
                         +|||++|++.++    ++         |.+|||||+||||++||+|+|+||+.|+++||+|.
T Consensus       165 ~~~~pIi~~G~~~~~----~~---------r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~~~  216 (219)
T 1q23_A          165 NFFAPVFTMGKYYTQ----GD---------KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEWQ  216 (219)
T ss_dssp             TCCSCEEEECCCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHCC
T ss_pred             cceeEEEecccEEEE----CC---------cEEEEEEEEEEchhhChHHHHHHHHHHHHHHhCcc
Confidence               699999999875    33         79999999999999999999999999999999863

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=2.1e-43  Score=421.71  Aligned_cols=213  Identities=18%  Similarity=0.271  Sum_probs=173.5

Q ss_pred             HhhhccCCcceEEeeeeeechHHHHHHHHHhh----hCCCCcCHHHHHHHHHHHHHhhCcccceeeccCC--CeEEEcCC
Q 006594          424 RLLESKQNTPHLYLSSDVVLDPLLSFRKELKE----KHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEK--GEIVLCDA  497 (639)
Q Consensus       424 ~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~----~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~--~~i~~~~~  497 (639)
                      +|.+|+ ++||||++.+||+|+|+++|+++|+    +.|.|+||++||+||+++||++||+||++|+++.  ++|++|++
T Consensus         1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~   79 (1113)
T 2xt6_A            1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH   79 (1113)
T ss_dssp             -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred             Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence            478885 8999999999999999999999875    3688999999999999999999999999998642  26999999


Q ss_pred             ccEEEEEecC--CC---eEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccceeeccCCC
Q 006594          498 IDISIAVATE--KG---LMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPP  572 (639)
Q Consensus       498 v~i~iAV~~~--~g---l~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~~pii~~p  572 (639)
                      ||||+||+++  +|   |++|||++++.+||.+|+++++++++++|+|+|+++|++||||||||+||+|.++|+||||||
T Consensus        80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISNlG~~G~~~~tPIinpp  159 (1113)
T 2xt6_A           80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTLGTVHSVPRLMQG  159 (1113)
T ss_dssp             CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEECC------------CTT
T ss_pred             ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeCCCcCCCcceECCCCCC
Confidence            9999999997  66   999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEEecCceEEEEEeeCCC-CCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhh
Q 006594          573 QAGILAVGRGNQVVEPVIGSD-GNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRL  637 (639)
Q Consensus       573 ~~ail~vG~~~~~~~~~~g~~-G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~l  637 (639)
                      |++||++|++.++|++.++++ +..+++++++|+|||+||||||||+++++||+.|+++||+|+.|
T Consensus       160 q~aIL~vG~i~~~pv~~~~~~~~~g~i~~r~~m~lsls~DHRviDGa~aa~FL~~lk~~Le~p~~w  225 (1113)
T 2xt6_A          160 QGAIIGAGAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLDDDFF  225 (1113)
T ss_dssp             CSEEEEECCCBCCTTSTTCCHHHHHHHTCCCEEEEEEEEETTTCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CceEEEcCccEEEeEEcCCCcccCCceeEeeeeEEEEEECcceechHHHHHHHHHHHHHHhCcHHH
Confidence            999999999998876643110 00168899999999999999999999999999999999999866

>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*

Probab=100.00  E-value=9.3e-42  Score=339.62  Aligned_cols=192  Identities=17%  Similarity=0.164  Sum_probs=170.7

Q ss_pred             HHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcCC
Q 006594          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCDA  497 (639)
Q Consensus       418 r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~~  497 (639)
                      ||.--....  .+++||||++.+||+|+|+++||+.      ++||+++++||+++||++||+||++|+++  +|++|++
T Consensus        13 R~~~f~~f~--~~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~Na~~~~~--~i~~~~~   82 (213)
T 3cla_A           13 RREHFEFYR--HRLPCGFSLTSKIDITTLKKSLDDS------AYKFYPVMIYLIAQAVNQFDELRMAIKDD--ELIVWDS   82 (213)
T ss_dssp             THHHHHHHH--HTSCCEEEEEEEEECHHHHHHHHTS------SCCHHHHHHHHHHHHHTTCGGGSEEEETT--EEEEESC
T ss_pred             cHHHHHHHh--CCCCceEEEEEEEEHHHHHHHHHHh------CCCHHHHHHHHHHHHHhhCHHhhEEEECC--EEEEEec
Confidence            444444443  2589999999999999999999765      89999999999999999999999999865  4999999


Q ss_pred             ccEEEEE-ecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcC-CCCC-CCCCCCeEEEEeCCCCCccceeeccCCC--
Q 006594          498 IDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARAG-KLAP-HEFQGGTFSISNLGMFPVDQFCAIINPP--  572 (639)
Q Consensus       498 v~i~iAV-~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g-~l~~-~d~~ggtftISnlG~~g~~~~~pii~~p--  572 (639)
                      ||||+|| ++++||++|++.+ +.+++.+|+++++++++++|+| +|.+ +|++||||||||+||++++.|+...+.+  
T Consensus        83 v~igiAVf~t~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~~~g~~  161 (213)
T 3cla_A           83 VDPQFTVFHQETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNVANFTD  161 (213)
T ss_dssp             CEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCCSCCTT
T ss_pred             cceeEEEEeCCCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccCCCCCc
Confidence            9999999 9999999999987 6789999999999999999996 9988 8899999999999999988876444433  


Q ss_pred             -cceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhc
Q 006594          573 -QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSD  633 (639)
Q Consensus       573 -~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~  633 (639)
                       ..|||++|++.++    +|         +.+|||||+||||+|||+|+|+||+.|+++||+
T Consensus       162 ~~~PIi~~G~~~~~----~~---------~~~m~lsls~DHRvvDG~~aa~Fl~~lk~~le~  210 (213)
T 3cla_A          162 YFAPIITMAKYQQE----GD---------RLLLPLSVQVHHAVCDGFHVARFINRLQELCNS  210 (213)
T ss_dssp             CCSCEEEEECCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTS
T ss_pred             ccccEEEeeEEEEE----CC---------eEEEEEEEEEcccccChHHHHHHHHHHHHHHHh
Confidence             2699999999875    33         799999999999999999999999999999998

>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-40  Score=330.85  Aligned_cols=190  Identities=17%  Similarity=0.146  Sum_probs=168.8

Q ss_pred             HHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeec-cCCCeEEEcC
Q 006594          418 RKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWD-VEKGEIVLCD  496 (639)
Q Consensus       418 r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~-~~~~~i~~~~  496 (639)
                      ||.--....  .+++||||++.+||+|+|+++||+.      ++||+++++||+++||++||+||++|+ ++.  |++|+
T Consensus        15 R~~~f~~f~--~~~~P~~~~~~evDvt~l~~~rk~~------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~--i~~~~   84 (217)
T 2i9d_A           15 RKENFNFFR--HFQNPQLSITSEVECGGARQRAKAA------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGR--VVLYD   84 (217)
T ss_dssp             THHHHHHHT--TCSBCEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSC--EEEES
T ss_pred             CHHHHHHHh--CCCCceEEEEEEEEhHHHHHHHHHc------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCE--EEEec
Confidence            444444432  3689999999999999999999876      899999999999999999999999998 554  99999


Q ss_pred             CccEEEEE-ecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHc-CCCCCC------CCCCCeEEEEeCCCCCccceeec
Q 006594          497 AIDISIAV-ATEKGLMTPIVRNADQKSISAISMEVKELAEKARA-GKLAPH------EFQGGTFSISNLGMFPVDQFCAI  568 (639)
Q Consensus       497 ~v~i~iAV-~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~-g~l~~~------d~~ggtftISnlG~~g~~~~~pi  568 (639)
                      +||||+|| ++++||++|++. ++.+++.+|+++++++++++|+ |+|.++      |++||||||||+||++++.|+..
T Consensus        85 ~i~igvAVf~t~~GL~~pv~~-~~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~  163 (217)
T 2i9d_A           85 TIDMLSPIKIKENGKFFTTRF-PYHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGT  163 (217)
T ss_dssp             CCEEEEEEECSTTSCEEEEEE-CCCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCC
T ss_pred             ccCeEEEEEecCCceEeEEEe-cCCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecC
Confidence            99999999 999999999986 5678999999999999999999 599995      99999999999999998888655


Q ss_pred             cCCC---cceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHH
Q 006594          569 INPP---QAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNF  631 (639)
Q Consensus       569 i~~p---~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~L  631 (639)
                      .+++   ..|||++|++.++    ++         |.+|||||++|||+|||+|+|+||+.|+++|
T Consensus       164 ~~~g~~~~~PIi~~Gk~~~~----~~---------r~~m~lsls~DHRvvDG~~aa~Fl~~lk~~l  216 (217)
T 2i9d_A          164 QEKRSGNNYPLLNAGKAIIR----EG---------RLVMPIAMTIHHGFIDGHHLSLFYKKVEDFL  216 (217)
T ss_dssp             BCSTTCCSSCEEEECCCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCccceEEEEecceEEEE----CC---------cEEEEEEEEecchhhChHHHHHHHHHHHHHh
Confidence            5544   2699999999865    33         7999999999999999999999999999987

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.78  E-value=8.1e-19  Score=159.84  Aligned_cols=93  Identities=55%  Similarity=0.916  Sum_probs=81.5

Q ss_pred             ccccc-cCCCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccc
Q 006594           75 VRHFS-SSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDV  152 (639)
Q Consensus        75 ~r~~~-~~~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v  152 (639)
                      +|.|. .+.+++++.|+||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |
T Consensus        15 ~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V   93 (128)
T 1y8o_B           15 ENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-V   93 (128)
T ss_dssp             --------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-E
T ss_pred             ccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-e
Confidence            34443 3467889999999999999999999999999999999999999999999999999999999999999998 8 9


Q ss_pred             cCCCcEEEEecCCccc
Q 006594          153 PVGQPIAITVEDADDI  168 (639)
Q Consensus       153 ~~G~~l~~i~~~~~~~  168 (639)
                      .+|++|+.|.+.+++.
T Consensus        94 ~~G~~L~~i~~~~~~~  109 (128)
T 1y8o_B           94 PLGTPLCIIVEKEADI  109 (128)
T ss_dssp             ETTCEEEEEESSGGGG
T ss_pred             cCCCEEEEEecCccch
Confidence            9999999998765443

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.76  E-value=7.3e-19  Score=156.06  Aligned_cols=86  Identities=59%  Similarity=0.912  Sum_probs=80.9

Q ss_pred             CCCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEE
Q 006594           82 ELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAI  160 (639)
Q Consensus        82 ~~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~  160 (639)
                      .+++++.|+||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|+.
T Consensus         3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~   81 (108)
T 2dne_A            3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI   81 (108)
T ss_dssp             CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred             CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence            36888999999999999999999999999999999999999999999999999999999999999999 8 999999999


Q ss_pred             EecCCccc
Q 006594          161 TVEDADDI  168 (639)
Q Consensus       161 i~~~~~~~  168 (639)
                      |...+++.
T Consensus        82 i~~~~~~~   89 (108)
T 2dne_A           82 TVGKPEDI   89 (108)
T ss_dssp             EESCHHHH
T ss_pred             EecCccch
Confidence            98765443

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.74  E-value=9e-18  Score=143.26  Aligned_cols=83  Identities=57%  Similarity=0.969  Sum_probs=78.6

Q ss_pred             CCcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEEE
Q 006594           83 LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAIT  161 (639)
Q Consensus        83 ~~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~i  161 (639)
                      +++++.+.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |..|++|+.|
T Consensus         2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i   80 (87)
T 3crk_C            2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCII   80 (87)
T ss_dssp             CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEE
T ss_pred             CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEE
Confidence            4667899999999999999999999999999999999999999999999999999999999999999 8 9999999999


Q ss_pred             ecCCc
Q 006594          162 VEDAD  166 (639)
Q Consensus       162 ~~~~~  166 (639)
                      ...++
T Consensus        81 ~~~~~   85 (87)
T 3crk_C           81 VEKEA   85 (87)
T ss_dssp             ESSST
T ss_pred             EcccC
Confidence            76543

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=9.3e-18  Score=146.38  Aligned_cols=83  Identities=53%  Similarity=0.866  Sum_probs=78.5

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccc-cCCCcEEEEe
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDV-PVGQPIAITV  162 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v-~~G~~l~~i~  162 (639)
                      .+.+.++||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|.
T Consensus         5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i~   83 (98)
T 2dnc_A            5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLIV   83 (98)
T ss_dssp             CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEEE
T ss_pred             cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEEe
Confidence            5668999999999999999999999999999999999999999999999999999999999999999 9 9999999998


Q ss_pred             cCCcc
Q 006594          163 EDADD  167 (639)
Q Consensus       163 ~~~~~  167 (639)
                      ..+++
T Consensus        84 ~~~~~   88 (98)
T 2dnc_A           84 EEGED   88 (98)
T ss_dssp             CTTSC
T ss_pred             cCCCc
Confidence            65543

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.71  E-value=3.1e-17  Score=141.73  Aligned_cols=81  Identities=23%  Similarity=0.406  Sum_probs=76.8

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      .+.+.|.||++|+++.+|+|.+|+|++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~   80 (93)
T 1k8m_A            2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIET   80 (93)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEEC
T ss_pred             CcceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEec
Confidence            3458899999999999999999999999999999999999999999999999999999999999999 999999999975


Q ss_pred             CC
Q 006594          164 DA  165 (639)
Q Consensus       164 ~~  165 (639)
                      .+
T Consensus        81 ~~   82 (93)
T 1k8m_A           81 EA   82 (93)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A

Probab=99.68  E-value=8.2e-17  Score=146.60  Aligned_cols=86  Identities=52%  Similarity=0.952  Sum_probs=80.1

Q ss_pred             CCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEEE
Q 006594          208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI  286 (639)
Q Consensus       208 ~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~~  286 (639)
                      ..|..+++.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|++
T Consensus        23 ~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~-V~~G~~L~~  101 (128)
T 1y8o_B           23 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCI  101 (128)
T ss_dssp             CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-EETTCEEEE
T ss_pred             cCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCee-ecCCCEEEE
Confidence            45667899999999999999999999999999999999999999999999999999999999999998 8 999999999


Q ss_pred             EecCCCCc
Q 006594          287 TVEDPGDV  294 (639)
Q Consensus       287 i~~~~~~~  294 (639)
                      |...+++.
T Consensus       102 i~~~~~~~  109 (128)
T 1y8o_B          102 IVEKEADI  109 (128)
T ss_dssp             EESSGGGG
T ss_pred             EecCccch
Confidence            98765443

>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}

Probab=99.67  E-value=5.2e-17  Score=144.09  Aligned_cols=86  Identities=53%  Similarity=0.862  Sum_probs=80.2

Q ss_pred             CCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEEE
Q 006594          208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAI  286 (639)
Q Consensus       208 ~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~~  286 (639)
                      ..|..+++.||++|+++.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+ . |.+|++|++
T Consensus         3 ~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~-V~~G~~l~~   81 (108)
T 2dne_A            3 SGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRD-VPIGAIICI   81 (108)
T ss_dssp             CCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCS-EETTCEEEE
T ss_pred             CCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCee-ecCCCEEEE
Confidence            46677899999999999999999999999999999999999999999999999999999999999998 8 999999999


Q ss_pred             EecCCCCc
Q 006594          287 TVEDPGDV  294 (639)
Q Consensus       287 i~~~~~~~  294 (639)
                      |...+++.
T Consensus        82 i~~~~~~~   89 (108)
T 2dne_A           82 TVGKPEDI   89 (108)
T ss_dssp             EESCHHHH
T ss_pred             EecCccch
Confidence            98665443

>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=1.7e-16  Score=138.39  Aligned_cols=85  Identities=46%  Similarity=0.779  Sum_probs=79.2

Q ss_pred             CCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccc-cCCCeEEEE
Q 006594          209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDV-AVGQPIAIT  287 (639)
Q Consensus       209 ~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v-~vG~~l~~i  287 (639)
                      .+..+++.||++|+++.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|+. | .+|++|+.|
T Consensus         4 ~~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~~-Vv~~G~~l~~i   82 (98)
T 2dnc_A            4 GSSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSK-NIRLGSLIGLI   82 (98)
T ss_dssp             CCCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCC-CEESSCEEEEE
T ss_pred             CcccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCCE-EcCCCCEEEEE
Confidence            34567899999999999999999999999999999999999999999999999999999999999999 9 999999999


Q ss_pred             ecCCCCc
Q 006594          288 VEDPGDV  294 (639)
Q Consensus       288 ~~~~~~~  294 (639)
                      ...+++.
T Consensus        83 ~~~~~~~   89 (98)
T 2dnc_A           83 VEEGEDW   89 (98)
T ss_dssp             ECTTSCS
T ss_pred             ecCCCcc
Confidence            8765543

>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*

Probab=99.66  E-value=1.9e-16  Score=134.94  Aligned_cols=82  Identities=52%  Similarity=0.950  Sum_probs=77.4

Q ss_pred             CCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC-ccccCCCeEEEEe
Q 006594          210 PPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS-KDVAVGQPIAITV  288 (639)
Q Consensus       210 ~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~-~~v~vG~~l~~i~  288 (639)
                      |.+.++.||++|.++.+|+|.+|+|++||.|++||+||+||++|+.++|+||++|+|.++++++|+ . |..|++|+.|.
T Consensus         3 ~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~-V~~G~~l~~i~   81 (87)
T 3crk_C            3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCIIV   81 (87)
T ss_dssp             CCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCC-EETTCEEEEEE
T ss_pred             CcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeE-ECCCCEEEEEE
Confidence            456889999999999999999999999999999999999999999999999999999999999999 8 99999999997


Q ss_pred             cCCC
Q 006594          289 EDPG  292 (639)
Q Consensus       289 ~~~~  292 (639)
                      ..++
T Consensus        82 ~~~~   85 (87)
T 3crk_C           82 EKEA   85 (87)
T ss_dssp             SSST
T ss_pred             cccC
Confidence            6543

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.64  E-value=2.4e-16  Score=131.78  Aligned_cols=76  Identities=28%  Similarity=0.560  Sum_probs=73.6

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      +.++||++|+++.+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            5789999999999999999999999999999999999999999999999999999999999999 999999999964

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A

Probab=99.64  E-value=1.5e-17  Score=181.16  Aligned_cols=81  Identities=35%  Similarity=0.592  Sum_probs=0.0

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      .++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |.+|++|+.|++++
T Consensus         2 ~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~-V~~G~~l~~i~~~~   80 (428)
T 3dva_I            2 AFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAPG   80 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999 99999999998765


Q ss_pred             cc
Q 006594          166 DD  167 (639)
Q Consensus       166 ~~  167 (639)
                      ++
T Consensus        81 ~~   82 (428)
T 3dva_I           81 YE   82 (428)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.61  E-value=1.4e-15  Score=127.23  Aligned_cols=76  Identities=26%  Similarity=0.340  Sum_probs=72.8

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      .+.+.||++|++  +|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|...
T Consensus         2 ~~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~   77 (80)
T 1qjo_A            2 VKEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             EEEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             CeEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence            368999999998  999999999999999999999999999999999999999999999999999 9999999999754

>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A

Probab=99.60  E-value=1.7e-15  Score=130.83  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=74.8

Q ss_pred             ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      .+++.||++|.++.+|+|.+|+|++||.|++||+|++||++|+.++|+||++|+|.++++++|+. |..|++|+.|...
T Consensus         4 ~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~~-V~~G~~l~~i~~~   81 (93)
T 1k8m_A            4 VVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE   81 (93)
T ss_dssp             CEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred             ceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCCE-eCCCCEEEEEecC
Confidence            46799999999999999999999999999999999999999999999999999999999999999 9999999999753

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.60  E-value=1.4e-15  Score=126.33  Aligned_cols=75  Identities=36%  Similarity=0.550  Sum_probs=73.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      ++++||++|+++.+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence            5789999999999999999999999999999999999999999999999999999999999999 99999999985

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.59  E-value=4.6e-17  Score=136.56  Aligned_cols=76  Identities=32%  Similarity=0.523  Sum_probs=73.3

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      +.++||++|+++.+|+|.+|++++||.|++||+||+||+||+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            5689999999999999999999999999999999999999999999999999999999999999 999999998853

>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A

Probab=99.58  E-value=4.1e-15  Score=124.22  Aligned_cols=76  Identities=28%  Similarity=0.579  Sum_probs=73.4

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      +++.||++|.++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (79)
T 1ghj_A            2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTE   77 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECC
T ss_pred             cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            4789999999999999999999999999999999999999999999999999999999999999 999999999964

>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.54  E-value=1.8e-15  Score=126.82  Aligned_cols=76  Identities=33%  Similarity=0.535  Sum_probs=72.9

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .++.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~G~~l~~i~~   78 (80)
T 1pmr_A            3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcCE-ECCCCEEEEEec
Confidence            4688999999999999999999999999999999999999999999999999999999999999 999999998853

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.53  E-value=1.5e-14  Score=120.69  Aligned_cols=75  Identities=25%  Similarity=0.362  Sum_probs=71.0

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      +.+.||++|++  + +|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++|+.|...+
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~~   76 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAA   76 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecCC
Confidence            46899999996  7 9999999999999999999999999999999999999999999999999 99999999997543

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.51  E-value=5.1e-15  Score=124.21  Aligned_cols=76  Identities=25%  Similarity=0.367  Sum_probs=72.5

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      .+.+.||++| +...|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|..
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA   77 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence            4678999999 688999999999999999999999999999999999999999999999999999 999999999964

>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}

Probab=99.50  E-value=3.6e-14  Score=117.77  Aligned_cols=75  Identities=29%  Similarity=0.509  Sum_probs=72.6

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .++.||++|+++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|.
T Consensus         2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~   76 (77)
T 2l5t_A            2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQV-VPVGSTLLQID   76 (77)
T ss_dssp             EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTCE-ECSCSEEEEEE
T ss_pred             eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcCE-ECCCCEEEEEE
Confidence            4688999999999999999999999999999999999999999999999999999999999999 99999999885

>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1

Probab=99.48  E-value=5.3e-14  Score=117.60  Aligned_cols=75  Identities=21%  Similarity=0.316  Sum_probs=71.9

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      +++.||++|.+  .|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus         3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~~   77 (80)
T 1qjo_A            3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCCE-ECCCCEEEEEEcc
Confidence            46899999998  999999999999999999999999999999999999999999999999999 9999999999754

>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A

Probab=99.45  E-value=2e-13  Score=113.83  Aligned_cols=74  Identities=20%  Similarity=0.320  Sum_probs=70.1

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      +++.||++|.+  + +|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|...
T Consensus         2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~g~~l~~i~~~   75 (79)
T 1iyu_A            2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred             cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            46889999996  6 9999999999999999999999999999999999999999999999999 9999999999754

>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1

Probab=99.41  E-value=1.2e-13  Score=115.70  Aligned_cols=76  Identities=28%  Similarity=0.401  Sum_probs=72.1

Q ss_pred             ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .+++.||+++ ++..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. +..|++|+.|..
T Consensus         2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-v~~g~~l~~i~~   77 (81)
T 1gjx_A            2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEA   77 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECC
T ss_pred             cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCCE-eCCCCEEEEEEe
Confidence            3578999999 688999999999999999999999999999999999999999999999999999 999999999964

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.39  E-value=3.1e-14  Score=120.68  Aligned_cols=72  Identities=28%  Similarity=0.368  Sum_probs=67.7

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      +.|.+|.+      |+|.+|++++||.|++||+||+||++|+..+|+||++|+|.++++++|+. |..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence            45778888      89999999999999999999999999999999999999999999999999 99999999997543

>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}

Probab=99.36  E-value=5.8e-13  Score=112.77  Aligned_cols=72  Identities=22%  Similarity=0.319  Sum_probs=67.4

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      +++.+|.+      |+|.+|++++||.|++||+|++||++|...+|.||++|+|.++++++|+. |..|++|+.|...+
T Consensus         3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~~-V~~G~~l~~i~~~~   74 (85)
T 2k7v_A            3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG   74 (85)
T ss_dssp             SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCC-BCTTSEEEEEECCS
T ss_pred             cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCCE-ECCCCEEEEEEcCC
Confidence            35778877      89999999999999999999999999999999999999999999999999 99999999997654

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.29  E-value=2.8e-12  Score=108.34  Aligned_cols=66  Identities=23%  Similarity=0.326  Sum_probs=62.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~  166 (639)
                      .+|+|.+|++++||.|++||+||+||++|+..+|+||++|+|.+++ .+|+. |..|++|+.|.....
T Consensus        12 ~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~~~   77 (84)
T 2kcc_A           12 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELDDL   77 (84)
T ss_dssp             SSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECSCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCCCh
Confidence            5699999999999999999999999999999999999999999999 99999 999999999976543

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.27  E-value=9.9e-13  Score=113.57  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             CCCcceEEecCCCCCCC----ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCc
Q 006594           82 ELPSHTVVGMPALSPTM----SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQP  157 (639)
Q Consensus        82 ~~~~~~~v~~p~~~~~~----~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~  157 (639)
                      .......|.+|...+..    ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++.+|+. |..|++
T Consensus        11 ~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~   89 (94)
T 2jku_A           11 VDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDL   89 (94)
T ss_dssp             -------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--------------------------------
T ss_pred             ccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCE
Confidence            34455778899988764    4899999999999999999999999999999999999999999999999999 999999


Q ss_pred             EEEEe
Q 006594          158 IAITV  162 (639)
Q Consensus       158 l~~i~  162 (639)
                      |+.|+
T Consensus        90 L~~ie   94 (94)
T 2jku_A           90 LVELE   94 (94)
T ss_dssp             -----
T ss_pred             EEEEC
Confidence            99873

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.27  E-value=6.9e-12  Score=102.30  Aligned_cols=64  Identities=25%  Similarity=0.315  Sum_probs=61.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      ..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~   69 (72)
T 1z6h_A            6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN   69 (72)
T ss_dssp             SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred             ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence            4699999999999999999999999999999999999999999999999999 999999999864

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.22  E-value=1.7e-11  Score=106.93  Aligned_cols=65  Identities=22%  Similarity=0.355  Sum_probs=61.7

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|. +++++|+. |..|++|+.|...+
T Consensus        24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~~~   88 (100)
T 2dn8_A           24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLELDD   88 (100)
T ss_dssp             SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECCSC
T ss_pred             CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEcCC
Confidence            4699999999999999999999999999999999999999999 99999999 99999999997544

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=99.15  E-value=7.4e-11  Score=96.52  Aligned_cols=63  Identities=30%  Similarity=0.457  Sum_probs=60.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      ..|+|.+|++++||.|++||+|+++|++|+...|.||++|+|.++++.+|+. |..|++|+.|+
T Consensus        12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i~   74 (74)
T 2d5d_A           12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIELG   74 (74)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred             CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEEC
Confidence            4699999999999999999999999999999999999999999999999999 99999999873

>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}

Probab=99.15  E-value=4.6e-11  Score=100.83  Aligned_cols=63  Identities=22%  Similarity=0.378  Sum_probs=60.3

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      .|+|.+|++++||.|++||+|++||++|+.++|.||++|+|.+++ ++|+. |..|++|+.|...
T Consensus        13 ~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~~-V~~G~~l~~i~~~   75 (84)
T 2kcc_A           13 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGAV-LEAGCVVARLELD   75 (84)
T ss_dssp             SCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTCC-CCTTCCCEEEECS
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCCE-ECCCCEEEEEeCC
Confidence            589999999999999999999999999999999999999999999 99999 9999999999643

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=99.14  E-value=8.1e-11  Score=97.24  Aligned_cols=63  Identities=29%  Similarity=0.379  Sum_probs=60.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      ..|.|.+|++++||.|++||+|++|+++|+..+|+||++|+|.++++.+|+. |..|++|+.|+
T Consensus        15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i~   77 (77)
T 1dcz_A           15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKIG   77 (77)
T ss_dssp             SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEEC
T ss_pred             CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEEC
Confidence            4689999999999999999999999999999999999999999999999999 99999999873

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=99.13  E-value=8.1e-11  Score=102.49  Aligned_cols=67  Identities=27%  Similarity=0.361  Sum_probs=63.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~  166 (639)
                      ..|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++..|+. |..|++|+.|...+.
T Consensus        21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~~   87 (99)
T 2ejm_A           21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEES   87 (99)
T ss_dssp             SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCCS
T ss_pred             CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCCc
Confidence            4699999999999999999999999999999999999999999999999999 999999999976544

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.12  E-value=6.3e-11  Score=98.81  Aligned_cols=57  Identities=30%  Similarity=0.482  Sum_probs=54.8

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      +|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+. |..|++|+.|+
T Consensus        24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i~   80 (80)
T 1bdo_A           24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE   80 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred             ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEEC
Confidence            4699999999999999999999999999999999999999999999 99999999873

>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*

Probab=99.11  E-value=8.9e-11  Score=95.62  Aligned_cols=63  Identities=24%  Similarity=0.324  Sum_probs=60.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .|+|.+|++++||.|++||+|+++|++|...+|.||++|+|.++++++|+. |..|++|+.|..
T Consensus         7 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~~-V~~G~~l~~i~~   69 (72)
T 1z6h_A            7 AGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDF-VNEGDVLLELSN   69 (72)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEEGG
T ss_pred             cEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCCE-ECCCCEEEEEeC
Confidence            589999999999999999999999999999999999999999999999999 999999999864

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=99.08  E-value=4.2e-12  Score=154.02  Aligned_cols=165  Identities=21%  Similarity=0.232  Sum_probs=104.2

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCcccccccccccCCcccccc
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQ  184 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~~~~~~~~~~~~~~~~~~~  184 (639)
                      =|+.++||+|.-    ..|.-++.....+...+|.. ++.++++ . ....+.+..+.+..++++.+...-..+..+..+
T Consensus      1067 p~ll~~gD~VrF----~~v~~~e~~~~~~~~~~G~~-~~~i~e~-~-f~~~~~~~~l~~~~~~i~~f~~~q~~a~~~e~~ 1139 (1236)
T 3va7_A         1067 PWLLTPFDQVEF----YPVTEEELEVIIEDNDNGKF-KIDVEES-I-FDHKEYLAWINENIDSIVAFQEAQGGEKADEFA 1139 (1236)
T ss_dssp             SBCCCTTCEEEE----EEECHHHHHHHHHHHHTTCS-BCEEEEE-E-EEHHHHHHHHHTTHHHHHHHHHTSCSHHHHHHH
T ss_pred             chhcCCCCEEEe----ccCCHHHHHHHHHHHhCCce-eeEEEEE-E-eeHHHHHHHHhhchhhHHHHHhhhhhhhHhhhh
Confidence            488899998864    34444444444444457776 7777774 4 566666766666666555444321111000000


Q ss_pred             -----cccccccchhhhccccccccCCCCCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEe
Q 006594          185 -----SSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFE  259 (639)
Q Consensus       185 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~  259 (639)
                           ........++  .   .....+........+.-|.      .|+|.+|+|++||.|++||+|++||+||++++|+
T Consensus      1140 ~w~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~v~ap~------~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ 1208 (1236)
T 3va7_A         1140 RLIQVANAELKKSGD--D---KPQDVEEYPDDAELLYSEY------TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVG 1208 (1236)
T ss_dssp             HHHTSCCCCCCCC-------------CCCCTTCEEEECSS------CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEE
T ss_pred             hhhhccccccccccc--c---cCccccccCCCCcEEeCCC------cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEe
Confidence                 0000000000  0   0000111122334454332      2899999999999999999999999999999999


Q ss_pred             cCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          260 CLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       260 s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      ||.+|+|.+|++++|+. |.+|++|++|.
T Consensus      1209 ap~~G~v~~i~v~~G~~-V~~G~~l~~i~ 1236 (1236)
T 3va7_A         1209 ATKSGKVYKILHKNGDM-VEAGDLVAVIV 1236 (1236)
T ss_dssp             CSSCEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred             cCCCeEEEEEEeCCcCE-eCCCCEEEEeC
Confidence            99999999999999999 99999999873

>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A

Probab=99.07  E-value=1.8e-10  Score=96.00  Aligned_cols=73  Identities=25%  Similarity=0.407  Sum_probs=62.4

Q ss_pred             eeecCCCCCcccc-cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          214 VLEMPALSPTMNQ-GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       214 ~~~~P~l~~~~~~-g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .+..|..|.-..- ..+.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus         6 ~v~a~~~G~v~~~~~~~~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~-V~~G~~L~~i   79 (80)
T 1bdo_A            6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI   79 (80)
T ss_dssp             EEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred             EEEcCCCeEEEEecccCcccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCCE-ECCCCEEEEE
Confidence            3444544432221 46678999999999999999999999999999999999999999999999 9999999987

>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}

Probab=99.04  E-value=5.2e-11  Score=102.73  Aligned_cols=74  Identities=19%  Similarity=0.290  Sum_probs=27.8

Q ss_pred             eeeecCCCCCcc----cccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          213 VVLEMPALSPTM----NQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       213 ~~~~~P~l~~~~----~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .++.+|......    ..|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+. |..|++|+.|
T Consensus        16 ~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i   93 (94)
T 2jku_A           16 ENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDT-VGEGDLLVEL   93 (94)
T ss_dssp             --------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             EEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcCE-ECCCCEEEEE
Confidence            345666665543    4699999999999999999999999999999999999999999999999999 9999999876

>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2.7e-10  Score=99.35  Aligned_cols=62  Identities=19%  Similarity=0.369  Sum_probs=59.7

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|. +++++|+. |..|++|+.|..
T Consensus        25 ~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~~-V~~G~~l~~i~~   86 (100)
T 2dn8_A           25 AGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGAV-LEAGCVVARLEL   86 (100)
T ss_dssp             CEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTCE-ECSSCEEEEECC
T ss_pred             CEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCCE-ECCCCEEEEEEc
Confidence            589999999999999999999999999999999999999999 99999999 999999999964

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.98  E-value=4.5e-10  Score=129.47  Aligned_cols=62  Identities=27%  Similarity=0.370  Sum_probs=60.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|++|+|++||+|++||+||+||+|||.++|+||.+|+|+++++++|+. |.+|++|+.|+
T Consensus       620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i~  681 (681)
T 3n6r_A          620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEFE  681 (681)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEEC
T ss_pred             cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEEC
Confidence            599999999999999999999999999999999999999999999999999 99999999984

>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}

Probab=98.96  E-value=2.5e-10  Score=82.93  Aligned_cols=39  Identities=31%  Similarity=0.405  Sum_probs=36.6

Q ss_pred             cCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHh
Q 006594          330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (639)
Q Consensus       330 ~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~  368 (639)
                      .+||+||++|+++|||++.|.|||++|||+++||++|+.
T Consensus         2 ~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~   40 (41)
T 2eq9_C            2 LAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE   40 (41)
T ss_dssp             CBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred             CCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence            479999999999999999999999999999999999863

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=98.96  E-value=9.2e-10  Score=89.90  Aligned_cols=61  Identities=28%  Similarity=0.447  Sum_probs=59.1

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|.|.+|++++||.|++||+|++++++|...+|.||.+|+|.++++++|+. +..|++|+.|
T Consensus        13 ~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~~-v~~g~~l~~i   73 (74)
T 2d5d_A           13 PGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEA-VDTGQPLIEL   73 (74)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             CEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcCE-ECCCCEEEEE
Confidence            588999999999999999999999999999999999999999999999999 9999999987

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=98.96  E-value=1.1e-09  Score=90.48  Aligned_cols=61  Identities=26%  Similarity=0.401  Sum_probs=59.2

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|.|.+|++++||.|++||+|++++++|...+|.||++|+|.++++++|+. |..|++|+.|
T Consensus        16 ~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~~-v~~G~~l~~i   76 (77)
T 1dcz_A           16 AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             SCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             CEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcCE-ECCCCEEEEE
Confidence            588999999999999999999999999999999999999999999999999 9999999987

>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A

Probab=98.95  E-value=2.2e-10  Score=89.24  Aligned_cols=43  Identities=28%  Similarity=0.437  Sum_probs=39.3

Q ss_pred             CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhcC
Q 006594          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKSG  370 (639)
Q Consensus       328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~~  370 (639)
                      .+.+||+||++|+++|||++.|+|||++|||+++||++|++..
T Consensus         7 ~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~~   49 (58)
T 3rnm_E            7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ   49 (58)
T ss_dssp             -CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHHH
T ss_pred             CcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhhh
Confidence            4568999999999999999999999999999999999998643

>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}

Probab=98.94  E-value=3.3e-10  Score=81.87  Aligned_cols=37  Identities=32%  Similarity=0.456  Sum_probs=35.6

Q ss_pred             CChhHHhhHHHcCCCcccccccCCCCeeeccchHHHH
Q 006594          331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (639)
Q Consensus       331 asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~  367 (639)
                      +||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq8_C            2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA   38 (40)
T ss_dssp             CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred             CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence            6899999999999999999999999999999999885

>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}

Probab=98.93  E-value=7.9e-10  Score=134.23  Aligned_cols=61  Identities=30%  Similarity=0.350  Sum_probs=59.8

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .|+|++|+|++||+|++||+||+||+||++++|+||.+|+|.++++++||. |.+|++|+.|
T Consensus      1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~~-V~~G~~l~~i 1235 (1236)
T 3va7_A         1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDM-VEAGDLVAVI 1235 (1236)
T ss_dssp             CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcCE-eCCCCEEEEe
Confidence            499999999999999999999999999999999999999999999999999 9999999987

>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}

Probab=98.93  E-value=1.1e-09  Score=95.27  Aligned_cols=65  Identities=23%  Similarity=0.353  Sum_probs=61.8

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .|.|.+|++++||.|++||+|++|+++|+..+|.||++|+|.++++++|+. |..|++|+.|....
T Consensus        22 ~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~~-V~~G~~L~~i~~~~   86 (99)
T 2ejm_A           22 TGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQ-ANRHTPLVEFEEEE   86 (99)
T ss_dssp             SEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEE-ECTTCBCEEECCCC
T ss_pred             CEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCCE-ECCCCEEEEEECCC
Confidence            589999999999999999999999999999999999999999999999999 99999999997543

>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}

Probab=98.91  E-value=2.7e-10  Score=82.33  Aligned_cols=37  Identities=32%  Similarity=0.561  Sum_probs=34.7

Q ss_pred             CChhHHhhHHHcCCCcccccccCCCCeeeccchHHHH
Q 006594          331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (639)
Q Consensus       331 asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~  367 (639)
                      +||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus         2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~   38 (40)
T 2eq7_C            2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL   38 (40)
T ss_dssp             CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred             CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence            6899999999999999999999999999999998765

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.90  E-value=1.2e-09  Score=132.07  Aligned_cols=64  Identities=14%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      .|+|++|+|++||.|++||+||+||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|+.+
T Consensus      1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEKA 1148 (1150)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC--
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence            599999999999999999999999999999999999999999999999999 9999999999643

>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*

Probab=98.85  E-value=9.2e-10  Score=83.12  Aligned_cols=40  Identities=30%  Similarity=0.413  Sum_probs=37.7

Q ss_pred             ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHh
Q 006594          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (639)
Q Consensus       329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~  368 (639)
                      ..+||+||++|+++|||++.|.|||++|||+++||++|+.
T Consensus         7 ~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~   46 (49)
T 1w85_I            7 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   46 (49)
T ss_dssp             CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             ccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence            4579999999999999999999999999999999999874

>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A

Probab=98.84  E-value=6.9e-10  Score=84.51  Aligned_cols=40  Identities=35%  Similarity=0.542  Sum_probs=37.0

Q ss_pred             CccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHH
Q 006594          328 FTKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAI  367 (639)
Q Consensus       328 ~~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~  367 (639)
                      ...+||+||++|+++|||++.|.|||++|||+++||++|+
T Consensus         9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~   48 (51)
T 1bal_A            9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL   48 (51)
T ss_dssp             SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred             CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence            3468999999999999999999999999999999999764

>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}

Probab=98.81  E-value=3.5e-09  Score=122.09  Aligned_cols=61  Identities=30%  Similarity=0.397  Sum_probs=59.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+. |.+|++|+.|
T Consensus       620 ~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~~-v~~g~~l~~i  680 (681)
T 3n6r_A          620 PGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGNS-LAVDDVIMEF  680 (681)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTCE-ECTTCEEEEE
T ss_pred             cEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcCE-eCCCCEEEEE
Confidence            378999999999999999999999999999999999999999999999999 9999999987

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=98.72  E-value=8.1e-09  Score=124.99  Aligned_cols=64  Identities=13%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      .|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+. |.+|++|+.|..+
T Consensus      1085 ~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~~-V~~g~~l~~i~~~ 1148 (1150)
T 3hbl_A         1085 PGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGDT-IATGDLLIEIEKA 1148 (1150)
T ss_dssp             SEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTCE-ECTTBEEEEEC--
T ss_pred             eEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCCE-eCCCCEEEEEecC
Confidence            488999999999999999999999999999999999999999999999999 9999999999643

>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A

Probab=98.72  E-value=5e-09  Score=82.98  Aligned_cols=41  Identities=29%  Similarity=0.423  Sum_probs=38.2

Q ss_pred             ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (639)
Q Consensus       329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~  369 (639)
                      ..+||+||+||+++|||++.|.|||++|||+++||++|+..
T Consensus         5 ~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~   45 (62)
T 1w4i_A            5 VAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEE   45 (62)
T ss_dssp             SEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHH
T ss_pred             ccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            34799999999999999999999999999999999999863

>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K

Probab=98.71  E-value=4.5e-09  Score=83.65  Aligned_cols=41  Identities=37%  Similarity=0.577  Sum_probs=38.2

Q ss_pred             ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (639)
Q Consensus       329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~  369 (639)
                      ..+||+||++|+++|||++.|.|||++|||+++||++|+..
T Consensus        10 ~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   50 (64)
T 2f60_K           10 FRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL   50 (64)
T ss_dssp             HHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence            34799999999999999999999999999999999999864

>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}

Probab=98.68  E-value=1.1e-08  Score=82.84  Aligned_cols=41  Identities=29%  Similarity=0.499  Sum_probs=38.5

Q ss_pred             ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHhc
Q 006594          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIKS  369 (639)
Q Consensus       329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~~  369 (639)
                      ..++|+||+||+++|||++.|.|||++|||+++||++|+..
T Consensus        16 ~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~   56 (70)
T 2coo_A           16 TLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEK   56 (70)
T ss_dssp             CCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhc
Confidence            45899999999999999999999999999999999999864

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.68  E-value=1.7e-08  Score=90.04  Aligned_cols=67  Identities=27%  Similarity=0.313  Sum_probs=61.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEccccee-----------------------------EEecCCceEEEEEEecCCC
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKATV-----------------------------EFESLEEGFLAKILVPEGS  149 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~-----------------------------~i~s~~~G~i~~~~v~~g~  149 (639)
                      ..|+|.+|+|++||.|++||+|++|++.++..                             .|.||++|+|.++.+.+|+
T Consensus         8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~   87 (116)
T 2k32_A            8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD   87 (116)
T ss_dssp             SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred             CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence            46999999999999999999999999886654                             8999999999999999999


Q ss_pred             ccccCC-CcEEEEecCCc
Q 006594          150 KDVPVG-QPIAITVEDAD  166 (639)
Q Consensus       150 ~~v~~G-~~l~~i~~~~~  166 (639)
                      . |..| ++|+.|.+.+.
T Consensus        88 ~-v~~g~~~l~~i~~~~~  104 (116)
T 2k32_A           88 Y-VSASTTELVRVTNLNP  104 (116)
T ss_dssp             E-ECTTTSCCEEEECSCT
T ss_pred             E-EcCCCcEEEEEECCCe
Confidence            9 9999 99999987554

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.67  E-value=2.2e-08  Score=91.72  Aligned_cols=62  Identities=16%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             EEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEE---EecCCCcccc---CCC-cEEEEecCC
Q 006594          103 IAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKI---LVPEGSKDVP---VGQ-PIAITVEDA  165 (639)
Q Consensus       103 v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~---~v~~g~~~v~---~G~-~l~~i~~~~  165 (639)
                      |..+.+ ++||.|++||+||+||+||+..+|.||.+|+|.++   ++..|+. |.   .|+ .|+.|...+
T Consensus        47 i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~i~~~~  116 (136)
T 1zko_A           47 VVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFKMEISD  116 (136)
T ss_dssp             EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEEEEESC
T ss_pred             cEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEEEEECC
Confidence            444444 99999999999999999999999999999999999   8889999 99   898 999997544

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.60  E-value=7.4e-09  Score=118.99  Aligned_cols=61  Identities=21%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      .|+|++|+|++||.|++||+||+||+||+..+|+||.+|+|.++++++|+. |..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence            799999999999999999999999999999999999999999999999999 9999999876

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.56  E-value=2.5e-08  Score=121.00  Aligned_cols=62  Identities=24%  Similarity=0.417  Sum_probs=53.9

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      .|+|++|+|++||.|++||+||+||+||+..+|+||.+|+|.++++++|+. |..|++|+.|+
T Consensus      1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred             CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence            699999999999999999999999999999999999999999999999999 99999999874

>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*

Probab=98.44  E-value=1.3e-07  Score=84.28  Aligned_cols=65  Identities=23%  Similarity=0.298  Sum_probs=59.8

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCccee-----------------------------eEecCCCeeEEEEecCCCCc
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATL-----------------------------EFECLEEGYLAKILAPEGSK  276 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~-----------------------------ei~s~~~G~v~~i~~~~G~~  276 (639)
                      .|.|.+|++++||.|++||+|+++++.++..                             .|.||++|+|..+.+.+|+.
T Consensus         9 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~   88 (116)
T 2k32_A            9 SGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGDY   88 (116)
T ss_dssp             CEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTCE
T ss_pred             CEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCCE
Confidence            5899999999999999999999999987654                             89999999999999999999


Q ss_pred             cccCC-CeEEEEecCC
Q 006594          277 DVAVG-QPIAITVEDP  291 (639)
Q Consensus       277 ~v~vG-~~l~~i~~~~  291 (639)
                       |..| ++|+.|.+..
T Consensus        89 -v~~g~~~l~~i~~~~  103 (116)
T 2k32_A           89 -VSASTTELVRVTNLN  103 (116)
T ss_dssp             -ECTTTSCCEEEECSC
T ss_pred             -EcCCCcEEEEEECCC
Confidence             9999 9999997643

>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A

Probab=98.42  E-value=2.7e-07  Score=84.52  Aligned_cols=61  Identities=18%  Similarity=0.241  Sum_probs=54.0

Q ss_pred             ccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEE---ecCCCCcccc---CCC-eEEEEec
Q 006594          228 NIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKI---LAPEGSKDVA---VGQ-PIAITVE  289 (639)
Q Consensus       228 ~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i---~~~~G~~~v~---vG~-~l~~i~~  289 (639)
                      .|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++   +++.|+. |.   -|+ .|+.|..
T Consensus        46 ~i~~V~lp~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~~-Vn~dp~g~GwL~~i~~  114 (136)
T 1zko_A           46 DVVYVDLPEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPEL-INKDPEGEGWLFKMEI  114 (136)
T ss_dssp             SEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTTH-HHHCTTTTTCCEEEEE
T ss_pred             CcEEEEecCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCccC-cccCCCCCeEEEEEEE
Confidence            3444444 99999999999999999999999999999999999   8889998 98   887 8888863

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=98.40  E-value=6.6e-08  Score=111.16  Aligned_cols=61  Identities=16%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .|+|++|+|++||.|++||+|++||++|+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus       657 ~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~~-V~~G~~L~~i  717 (718)
T 3bg3_A          657 PGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMT-LEGDDLILEI  717 (718)
T ss_dssp             CEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEE-ECSSCEEECB
T ss_pred             CeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCCE-eCCCCEEEEe
Confidence            589999999999999999999999999999999999999999999999999 9999999876

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=98.34  E-value=1.9e-07  Score=113.42  Aligned_cols=62  Identities=23%  Similarity=0.397  Sum_probs=53.4

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~  288 (639)
                      .|+|.+|+|++||.|++||+|++||++|+.++|+||.+|+|.++++++|+. |..|++|+.|.
T Consensus      1103 ~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~~-V~~g~~l~~i~ 1164 (1165)
T 2qf7_A         1103 PGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGDQ-IDAKDLLAVYG 1164 (1165)
T ss_dssp             CEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSCE-ECTTBEEEEC-
T ss_pred             CeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEec
Confidence            488999999999999999999999999999999999999999999999999 99999999874

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=98.24  E-value=1.3e-06  Score=79.28  Aligned_cols=62  Identities=16%  Similarity=0.196  Sum_probs=50.6

Q ss_pred             EEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec---CCCccc---cCCC-cEEEEecCC
Q 006594          103 IAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP---EGSKDV---PVGQ-PIAITVEDA  165 (639)
Q Consensus       103 v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~---~g~~~v---~~G~-~l~~i~~~~  165 (639)
                      |+.+. .++||+|++||+||+||++|+..+|.||.+|+|.+++..   ..+. |   +-|+ -|+.|...+
T Consensus        38 i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~~~~  107 (128)
T 1onl_A           38 VVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRLKPRD  107 (128)
T ss_dssp             EEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEEESC
T ss_pred             ceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEEEECC
Confidence            44443 499999999999999999999999999999999999765   4444 5   5576 888887544

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=98.20  E-value=6.5e-07  Score=81.55  Aligned_cols=64  Identities=14%  Similarity=0.088  Sum_probs=51.7

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC---cccc---CCC-cEEEEecCC
Q 006594          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS---KDVP---VGQ-PIAITVEDA  165 (639)
Q Consensus       101 g~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~---~~v~---~G~-~l~~i~~~~  165 (639)
                      |.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.++..+.++   . |.   -|+ -|+.|...+
T Consensus        36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~~~~  107 (131)
T 1hpc_A           36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTGKPGL-INSSPYEDGWMIKIKPTS  107 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEEESS
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhcChhh-hccCCCCCceEEEEEECC
Confidence            33555555 99999999999999999999999999999999999866554   4 43   455 788887544

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=98.18  E-value=1.5e-06  Score=78.91  Aligned_cols=63  Identities=14%  Similarity=0.039  Sum_probs=50.2

Q ss_pred             EEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCcc--cc---CCC-cEEEEecCC
Q 006594          103 IAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKD--VP---VGQ-PIAITVEDA  165 (639)
Q Consensus       103 v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~--v~---~G~-~l~~i~~~~  165 (639)
                      |+.+. .++||+|++||+||+||++|+..+|.||.+|+|.++....++.+  |.   -|+ -|+.|...+
T Consensus        39 i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~P~lvn~dpy~~gWl~~i~~~~  108 (128)
T 3a7l_A           39 MVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWIFKIKASD  108 (128)
T ss_dssp             EEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTCTTHHHHCTTTTTCCEEEEESC
T ss_pred             eEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccChHHhccCCCCCccEEEEEECC
Confidence            44444 49999999999999999999999999999999999987554431  44   465 788887544

>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*

Probab=97.99  E-value=3e-06  Score=77.10  Aligned_cols=49  Identities=16%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~  275 (639)
                      |.|+.+.+ ++||.|++||+||+||++|+..+|.||.+|+|.+++.+.++
T Consensus        36 G~i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~~   85 (131)
T 1hpc_A           36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLTG   85 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHHH
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhhc
Confidence            45666655 99999999999999999999999999999999999866554

>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*

Probab=97.97  E-value=6.1e-06  Score=74.82  Aligned_cols=50  Identities=16%  Similarity=0.172  Sum_probs=42.7

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCc
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK  276 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~  276 (639)
                      |.|+...+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+.++.
T Consensus        37 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~~~   87 (128)
T 3a7l_A           37 GDMVFVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDS   87 (128)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred             CceEEEEecCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhccC
Confidence            44555544 899999999999999999999999999999999997655443

>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1

Probab=97.90  E-value=5.6e-06  Score=75.09  Aligned_cols=61  Identities=16%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecC---CCCccc---cCCC-eEEEEe
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAP---EGSKDV---AVGQ-PIAITV  288 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~---~G~~~v---~vG~-~l~~i~  288 (639)
                      |.|+...+ ++|+.|++||+||+||++|+..+|.||.+|+|.+++.+   ..+. |   +-|+ -|+.|.
T Consensus        36 G~i~~v~lp~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~l-vn~dpy~~gWl~~i~  104 (128)
T 1onl_A           36 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPEL-VNQDPYGEGWIFRLK  104 (128)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTTH-HHHCTTTTTCCEEEE
T ss_pred             CCceEEEecCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChhh-hccCCCCCccEEEEE
Confidence            44555544 99999999999999999999999999999999999755   3333 4   3454 666664

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.70  E-value=0.00016  Score=75.86  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=57.6

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  117 (341)
T 3fpp_A           38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD  117 (341)
T ss_dssp             SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred             CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence            469999999999999999999999987421                                                  


Q ss_pred             -----------------------------------eeEEecCCceEEEEEEecCCCccccCCCc---EEEEecCC
Q 006594          129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVEDA  165 (639)
Q Consensus       129 -----------------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~---l~~i~~~~  165 (639)
                                                         ...|+||++|+|.++.+..|+. |..|++   |+.|.+.+
T Consensus       118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~~  191 (341)
T 3fpp_A          118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADMS  191 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecCC
Confidence                                               1459999999999999999999 999998   99987544

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.63  E-value=6.4e-05  Score=81.49  Aligned_cols=66  Identities=17%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             ceEEEEEEEe-cCCCeeecCCeEEEEEcc------------------------------------------------cce
Q 006594           99 SQGNIAKWRK-KEGDKIEIGDILCEIETD------------------------------------------------KAT  129 (639)
Q Consensus        99 ~eg~v~~w~v-~~Gd~V~~g~~l~~ietd------------------------------------------------K~~  129 (639)
                      ..|.|.+++| ++||.|++||+|++|++.                                                ...
T Consensus       128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~  207 (413)
T 3ne5_B          128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR  207 (413)
T ss_dssp             SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred             cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence            4699999998 999999999999999952                                                124


Q ss_pred             eEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          130 VEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       130 ~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ..|+||++|+|.++.+.+|+. |..|++|+.|.+.+
T Consensus       208 ~~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~~~  242 (413)
T 3ne5_B          208 FTLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQGMD  242 (413)
T ss_dssp             EEEECSSSEEEEECCCCTTCE-ECTTSCSEEEEEEE
T ss_pred             EEEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeCCC
Confidence            579999999999999999999 99999999997544

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.62  E-value=5.7e-05  Score=79.88  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=59.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a  143 (359)
T 3lnn_A           64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS  143 (359)
T ss_dssp             SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999997532                                                  


Q ss_pred             --------------------------eeEEecCCceEEEEEEecCCCccccC-CCcEEEEecCCc
Q 006594          129 --------------------------TVEFESLEEGFLAKILVPEGSKDVPV-GQPIAITVEDAD  166 (639)
Q Consensus       129 --------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~-G~~l~~i~~~~~  166 (639)
                                                ...|.||++|+|.++.+..|+. |.. |++|+.|.+.+.
T Consensus       144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~~~  207 (359)
T 3lnn_A          144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADLSH  207 (359)
T ss_dssp             HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECCSE
T ss_pred             HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecCCe
Confidence                                      2579999999999999999999 999 999999976543

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.61  E-value=2.2e-05  Score=80.05  Aligned_cols=67  Identities=31%  Similarity=0.319  Sum_probs=58.3

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEccc---------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDK---------------------------------------------------  127 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK---------------------------------------------------  127 (639)
                      ..|.|.+++|++||.|++||+|++|++..                                                   
T Consensus        29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~  108 (277)
T 2f1m_A           29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ  108 (277)
T ss_dssp             SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred             ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence            46999999999999999999999998742                                                   


Q ss_pred             --------------------ceeEEecCCceEEEEEEecCCCccccCC--CcEEEEecCCc
Q 006594          128 --------------------ATVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDAD  166 (639)
Q Consensus       128 --------------------~~~~i~s~~~G~i~~~~v~~g~~~v~~G--~~l~~i~~~~~  166 (639)
                                          ....|+||++|+|..+.+.+|+. |..|  ++|+.|.+.+.
T Consensus       109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~~~  168 (277)
T 2f1m_A          109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQLDP  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecCCc
Confidence                                12479999999999999999999 9999  69999976543

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.56  E-value=8.3e-05  Score=66.88  Aligned_cols=77  Identities=17%  Similarity=0.152  Sum_probs=55.5

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCcc--c---cCCC-cEE
Q 006594           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKD--V---PVGQ-PIA  159 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~--v---~~G~-~l~  159 (639)
                      ..|-+=+.+.. .=|.|+.+.. ++|+.|++||.+|.||++|+..+|.||.+|+|.++.....+.+  |   +-|+ =|+
T Consensus        19 ~~vGITd~Aq~-~lGdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~~P~liN~dpy~~gWl~   97 (125)
T 3klr_A           19 GTVGISNFAQE-ALGDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAENPGLVNKSCYEDGWLI   97 (125)
T ss_dssp             EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTTCTTHHHHCTTTTTCCE
T ss_pred             EEEeeCHHHHh-hCCCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhhChHhhcCCCCCCceEE
Confidence            34444444443 2367777666 7899999999999999999999999999999999977665530  1   1243 466


Q ss_pred             EEecC
Q 006594          160 ITVED  164 (639)
Q Consensus       160 ~i~~~  164 (639)
                      .|...
T Consensus        98 ki~~~  102 (125)
T 3klr_A           98 KMTFS  102 (125)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            66543

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=97.44  E-value=0.00016  Score=66.28  Aligned_cols=63  Identities=19%  Similarity=0.274  Sum_probs=49.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      ..|-+=+.... .=|.|+.+.. ++|+.|++||.+|.||++|+..+|.||.+|+|.++.-...+.
T Consensus        41 ~~VGITd~Aq~-~LGdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d~  104 (143)
T 3mxu_A           41 VTVGITDYAQE-QLGDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAES  104 (143)
T ss_dssp             EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGTC
T ss_pred             EEEeeCHHHHh-hcCCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhhC
Confidence            44555444433 2366766555 789999999999999999999999999999999987766554

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=97.37  E-value=0.00018  Score=65.65  Aligned_cols=59  Identities=15%  Similarity=0.322  Sum_probs=45.8

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~  146 (639)
                      ..|-+=+.... .=|.|+.+.. ++|++|++||.+|.||++|+..+|.||.+|+|.++.-.
T Consensus        36 ~~VGITd~Aq~-~lGdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~~   95 (137)
T 3tzu_A           36 VRVGITSVAVE-ALGDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNTA   95 (137)
T ss_dssp             EEEEECHHHHH-HHCSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECHH
T ss_pred             EEEeeCHHHHh-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehhh
Confidence            44444444333 2366766555 78999999999999999999999999999999988543

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=97.27  E-value=0.0001  Score=78.60  Aligned_cols=66  Identities=26%  Similarity=0.293  Sum_probs=57.8

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~  129 (369)
T 1vf7_A           50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  129 (369)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999999986421                                                  


Q ss_pred             -------eeEEecCCceEEEEEEecCCCccccCC--CcEEEEecCC
Q 006594          129 -------TVEFESLEEGFLAKILVPEGSKDVPVG--QPIAITVEDA  165 (639)
Q Consensus       129 -------~~~i~s~~~G~i~~~~v~~g~~~v~~G--~~l~~i~~~~  165 (639)
                             ...|+||++|+|.++.+..|+. |..|  ++|+.|.+.+
T Consensus       130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~~  174 (369)
T 1vf7_A          130 QARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQLD  174 (369)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECCS
T ss_pred             HHHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecCC
Confidence                   2479999999999999999999 9995  8999997644

>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}

Probab=97.24  E-value=9.8e-05  Score=75.20  Aligned_cols=64  Identities=25%  Similarity=0.283  Sum_probs=56.6

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.+++|++||.|++||+|+++++...                                                   
T Consensus        30 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~  109 (277)
T 2f1m_A           30 SGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQ  109 (277)
T ss_dssp             CEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHH
Confidence            48999999999999999999999987421                                                   


Q ss_pred             --------------------eeeEecCCCeeEEEEecCCCCccccCC--CeEEEEecC
Q 006594          255 --------------------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED  290 (639)
Q Consensus       255 --------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG--~~l~~i~~~  290 (639)
                                          ...|.||++|+|..+.+.+|+. |..|  ++|+.|.+.
T Consensus       110 a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~~-v~~g~~~~l~~i~~~  166 (277)
T 2f1m_A          110 ANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGAL-VQNGQATALATVQQL  166 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTCE-ECTTCSSCSEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCCE-EcCCCCceeEEEecC
Confidence                                2479999999999999999999 9999  699999754

>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}

Probab=97.22  E-value=0.00027  Score=74.68  Aligned_cols=64  Identities=20%  Similarity=0.319  Sum_probs=57.5

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|+++++...                                                   
T Consensus        65 ~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~  144 (359)
T 3lnn_A           65 AGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASE  144 (359)
T ss_dssp             CEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999998642                                                   


Q ss_pred             -------------------------eeeEecCCCeeEEEEecCCCCccccC-CCeEEEEecC
Q 006594          255 -------------------------TLEFECLEEGYLAKILAPEGSKDVAV-GQPIAITVED  290 (639)
Q Consensus       255 -------------------------~~ei~s~~~G~v~~i~~~~G~~~v~v-G~~l~~i~~~  290 (639)
                                               ...|.||++|+|..+.+..|+. |.. |++|+.|.+.
T Consensus       145 l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~~-v~~~g~~l~~i~~~  205 (359)
T 3lnn_A          145 SQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGAY-WNDTTASLMTVADL  205 (359)
T ss_dssp             HHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTCE-ECCSSCCSEEEECC
T ss_pred             HHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCce-eCCCCcceEEEecC
Confidence                                     2469999999999999999999 998 9999999754

>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B

Probab=97.20  E-value=0.00028  Score=76.37  Aligned_cols=63  Identities=17%  Similarity=0.264  Sum_probs=56.5

Q ss_pred             ccccceeec-CCCCccccCCeeeEeecC------------------------------------------------ccee
Q 006594          226 QGNIAKWRK-NEGDKIEVGDVICEIETD------------------------------------------------KATL  256 (639)
Q Consensus       226 ~g~i~~w~v-~~Gd~V~~gd~l~~vetd------------------------------------------------K~~~  256 (639)
                      .|.|.+++| ++||.|++||+|+++++.                                                ....
T Consensus       129 ~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~~  208 (413)
T 3ne5_B          129 AGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRF  208 (413)
T ss_dssp             CEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCEE
T ss_pred             CEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhccccccE
Confidence            589999998 999999999999999952                                                1245


Q ss_pred             eEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          257 EFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       257 ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      .|.||++|+|.++.+.+|+. |..|++|+.|.+
T Consensus       209 ~I~AP~~G~V~~~~v~~G~~-V~~G~~l~~I~~  240 (413)
T 3ne5_B          209 TLKAPIDGVITAFDLRAGMN-IAKDNVVAKIQG  240 (413)
T ss_dssp             EEECSSSEEEEECCCCTTCE-ECTTSCSEEEEE
T ss_pred             EEEcCCCeEEEEEEcCCCCE-ECCCCcEEEEeC
Confidence            79999999999999999999 999999999974

>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A

Probab=97.18  E-value=0.00042  Score=62.29  Aligned_cols=49  Identities=18%  Similarity=0.204  Sum_probs=42.4

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~  275 (639)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.-...+
T Consensus        32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l~~   81 (125)
T 3klr_A           32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKALAE   81 (125)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGTT
T ss_pred             CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhhhh
Confidence            66766655 78999999999999999999999999999999999655443

>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}

Probab=97.12  E-value=0.00034  Score=73.34  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=56.0

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|+++++...                                                   
T Consensus        39 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  118 (341)
T 3fpp_A           39 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDN  118 (341)
T ss_dssp             CEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHH
T ss_pred             CcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHH
Confidence            48999999999999999999999998521                                                   


Q ss_pred             ----------------------------------eeeEecCCCeeEEEEecCCCCccccCCCe---EEEEecC
Q 006594          255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITVED  290 (639)
Q Consensus       255 ----------------------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~---l~~i~~~  290 (639)
                                                        ...|.||++|+|..+.+..|+. |..|++   |+.|.+.
T Consensus       119 a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~  190 (341)
T 3fpp_A          119 AATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQT-VIAAQQAPNILTLADM  190 (341)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTCE-ECCTTSCCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCCE-EecCCCCceEEEEecC
Confidence                                              1459999999999999999999 999987   8888643

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=97.10  E-value=0.00061  Score=63.17  Aligned_cols=59  Identities=15%  Similarity=0.282  Sum_probs=45.4

Q ss_pred             eEEecCCCCCCCceEEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594           87 TVVGMPALSPTMSQGNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~  146 (639)
                      ..|-+=+.... .=|.|+.+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.-.
T Consensus        46 ~~VGITd~Aq~-~LGdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~~  105 (155)
T 3hgb_A           46 VRVGITDYAQS-ALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNSD  105 (155)
T ss_dssp             EEEEECHHHHH-HHCSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECTH
T ss_pred             EEEeeCHHHHH-hcCCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence            44444444333 2356655544 78999999999999999999999999999999887653

>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}

Probab=96.99  E-value=0.00074  Score=61.88  Aligned_cols=49  Identities=22%  Similarity=0.289  Sum_probs=41.5

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCC
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGS  275 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~  275 (639)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.+++-+..+
T Consensus        54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~L~d  103 (143)
T 3mxu_A           54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAALAE  103 (143)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGGT
T ss_pred             CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhhhhh
Confidence            56665544 78999999999999999999999999999999998654433

>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}

Probab=96.88  E-value=0.00081  Score=61.30  Aligned_cols=45  Identities=16%  Similarity=0.341  Sum_probs=39.6

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.+++-
T Consensus        49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN~   94 (137)
T 3tzu_A           49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVNT   94 (137)
T ss_dssp             CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEECH
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEehh
Confidence            56665544 7999999999999999999999999999999999853

>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A

Probab=96.77  E-value=0.00047  Score=73.39  Aligned_cols=64  Identities=20%  Similarity=0.272  Sum_probs=56.3

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|++|++...                                                   
T Consensus        51 ~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~~  130 (369)
T 1vf7_A           51 NGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVEQ  130 (369)
T ss_dssp             CEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999987431                                                   


Q ss_pred             ------eeeEecCCCeeEEEEecCCCCccccCC--CeEEEEecC
Q 006594          255 ------TLEFECLEEGYLAKILAPEGSKDVAVG--QPIAITVED  290 (639)
Q Consensus       255 ------~~ei~s~~~G~v~~i~~~~G~~~v~vG--~~l~~i~~~  290 (639)
                            ...|.||++|+|..+.+..|+. |..|  ++|+.|...
T Consensus       131 a~~~l~~~~I~AP~~G~V~~~~v~~G~~-V~~g~g~~l~~i~~~  173 (369)
T 1vf7_A          131 ARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMATVQQL  173 (369)
T ss_dssp             HHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEEEECC
T ss_pred             HHHhhcCCEEECCCCeEEEEEEcCCCCe-EcCCCCceeEEEecC
Confidence                  2479999999999999999999 9995  899999743

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=96.76  E-value=9.9e-05  Score=78.24  Aligned_cols=65  Identities=28%  Similarity=0.379  Sum_probs=55.4

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+++|++||.|++||+|++|++...                                                  
T Consensus        39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~  118 (369)
T 4dk0_A           39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN  118 (369)
T ss_dssp             SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred             CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence            458999999999999999999999987421                                                  


Q ss_pred             -----------------------------------eeEEecCCceEEEEEEecCCCccccCCCc---EEEEecC
Q 006594          129 -----------------------------------TVEFESLEEGFLAKILVPEGSKDVPVGQP---IAITVED  164 (639)
Q Consensus       129 -----------------------------------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~---l~~i~~~  164 (639)
                                                         ...|+||++|+|.++.+..|+. |..|++   |+.|.+.
T Consensus       119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~~~  191 (369)
T 4dk0_A          119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVADL  191 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEcCC
Confidence                                               1249999999999999999999 999998   6666443

>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A

Probab=96.53  E-value=0.00052  Score=72.67  Aligned_cols=62  Identities=23%  Similarity=0.356  Sum_probs=53.9

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcc---------------------------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKA---------------------------------------------------  254 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~---------------------------------------------------  254 (639)
                      .|.|.++++++||.|++||+|+++++...                                                   
T Consensus        40 ~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~  119 (369)
T 4dk0_A           40 SGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNT  119 (369)
T ss_dssp             CSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHH
T ss_pred             CcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHH
Confidence            48999999999999999999999987531                                                   


Q ss_pred             ----------------------------------eeeEecCCCeeEEEEecCCCCccccCCCe---EEEEe
Q 006594          255 ----------------------------------TLEFECLEEGYLAKILAPEGSKDVAVGQP---IAITV  288 (639)
Q Consensus       255 ----------------------------------~~ei~s~~~G~v~~i~~~~G~~~v~vG~~---l~~i~  288 (639)
                                                        ...|.||++|+|..+.+..|+. |..|++   |+.|.
T Consensus       120 a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~~-v~~g~~~~~l~~i~  189 (369)
T 4dk0_A          120 AKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQT-VNSNQTTPTIIKVA  189 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTCB-CCTTTSCCCCBBCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCCC-ccCCCCcceEEEEc
Confidence                                              1249999999999999999999 999998   65554

>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A

Probab=96.51  E-value=0.0022  Score=59.46  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             cccceeec-CCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWRK-NEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~v-~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.|+-+.. ++|+.|++||.++.||+.|+..+|.||.+|+|.++.-
T Consensus        59 GdIvfVeLP~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN~  104 (155)
T 3hgb_A           59 GDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVNS  104 (155)
T ss_dssp             CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECT
T ss_pred             CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEhh
Confidence            55655433 7899999999999999999999999999999988853

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=95.92  E-value=0.026  Score=59.42  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=27.2

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEE
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK  142 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~  142 (639)
                      ..+|++||.|++||.||+-.      .|-+..+|+|..
T Consensus        62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~   93 (352)
T 2xhc_A           62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD   93 (352)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred             EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence            57999999999999999964      788888888743

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.87  E-value=0.037  Score=53.07  Aligned_cols=30  Identities=20%  Similarity=0.415  Sum_probs=27.6

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEE
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFL  140 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i  140 (639)
                      ..+|++|+.|++||.||+-.      .|-+.++|+|
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V   51 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVI   51 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEE
Confidence            56899999999999999875      8999999999

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=95.50  E-value=0.027  Score=58.99  Aligned_cols=61  Identities=16%  Similarity=0.237  Sum_probs=50.4

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      +-+++..++.||.|++||+|++|..    .....+|.||.+|+|.....  .-. |..|+.|+.|...
T Consensus       265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~~  329 (331)
T 3na6_A          265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGVV  329 (331)
T ss_dssp             CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEECB
T ss_pred             CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEecc
Confidence            3466889999999999999999986    35678999999999976554  345 8899999999643

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=95.21  E-value=0.042  Score=58.02  Aligned_cols=60  Identities=20%  Similarity=0.246  Sum_probs=51.7

Q ss_pred             EEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          103 IAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       103 v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      +++..++.||.|++||+|+.|+.    .+...+|.||.+|+|..+.  .... |..|+.|+.|....
T Consensus       277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~~  340 (354)
T 3cdx_A          277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMEDY  340 (354)
T ss_dssp             EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEEC
T ss_pred             EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeeec
Confidence            67888999999999999999997    4788999999999997664  6667 89999999996543

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=94.99  E-value=0.044  Score=58.26  Aligned_cols=60  Identities=13%  Similarity=0.173  Sum_probs=49.8

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc------ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET------DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet------dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      +=|.+..++.||.|++||+|++|-.      .....+|.||.+|+|.-...  .-. |..|+.|+.|..
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~--~p~-V~~G~~l~~i~~  363 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFA--SAS-VHQGTELYKVMT  363 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECS--SSE-ECTTCEEEEEEE
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEee
Confidence            3455899999999999999999986      45678999999999955544  456 999999999864

>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}

Probab=94.63  E-value=0.049  Score=57.02  Aligned_cols=60  Identities=15%  Similarity=0.242  Sum_probs=50.1

Q ss_pred             cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      +-+.+.+++.||.|++||+|++|..    .....+|.||.+|+|.....  .-. |..|+.|+.|..
T Consensus       265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~~--~~~-V~~G~~l~~Ia~  328 (331)
T 3na6_A          265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRHF--PGM-IKSGDCAAVIGV  328 (331)
T ss_dssp             CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEEC--SSE-ECTTCEEEEEEC
T ss_pred             CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEec
Confidence            3377788999999999999999997    35678999999999987654  344 889999999864

>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}

Probab=94.17  E-value=0.08  Score=55.85  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=51.0

Q ss_pred             cceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          229 IAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       229 i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      +.+..++.||.|++||+|++|+.    .+...+|.||.+|+|..+.  .... |..|+.|+.|...
T Consensus       277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~~--~~~~-V~~Gd~l~~ia~~  339 (354)
T 3cdx_A          277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGA--GPGR-VTRGDAVAVVMED  339 (354)
T ss_dssp             EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEE--CSSE-ECTTCEEEEEEEE
T ss_pred             EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEEe--CCCc-cCCCCEEEEEeee
Confidence            67778899999999999999997    5788999999999998764  5666 8899999998643

>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*

Probab=94.02  E-value=0.083  Score=56.10  Aligned_cols=60  Identities=12%  Similarity=0.166  Sum_probs=51.0

Q ss_pred             cccceeecCCCCccccCCeeeEeec------CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET------DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet------dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      +=|.+.+++.||.|++||+|++|..      .....+|.||.+|+|.....  .-. |..|+.|+.|..
T Consensus       298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~~~--~p~-V~~G~~l~~i~~  363 (368)
T 3fmc_A          298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFA--SAS-VHQGTELYKVMT  363 (368)
T ss_dssp             CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECS--SSE-ECTTCEEEEEEE
T ss_pred             CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEEeC--CCc-cCCCCEEEEEee
Confidence            4477789999999999999999998      56778999999999977654  455 899999998864

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=93.45  E-value=0.054  Score=50.65  Aligned_cols=59  Identities=24%  Similarity=0.295  Sum_probs=50.5

Q ss_pred             ceEEEEEEEecCCCeeec----CCeEEEEEcccceeEEecCCceEEEEE-------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI-------------------------------  143 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~----g~~l~~ietdK~~~~i~s~~~G~i~~~-------------------------------  143 (639)
                      -.|+|+.+. ++.|.|-.    |+-++...++   ..+.||++|+|..+                               
T Consensus        19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~   94 (161)
T 1f3z_A           19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE   94 (161)
T ss_dssp             SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred             CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence            468998876 78888777    8888877765   57899999999988                               


Q ss_pred             ----EecCCCccccCCCcEEEEe
Q 006594          144 ----LVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       144 ----~v~~g~~~v~~G~~l~~i~  162 (639)
                          +|+.||. |+.|++|+.++
T Consensus        95 gF~~~V~~Gd~-V~~G~~L~~~d  116 (161)
T 1f3z_A           95 GFKRIAEEGQR-VKVGDTVIEFD  116 (161)
T ss_dssp             TEEECSCTTCE-ECTTCEEEEEC
T ss_pred             ccEEEEeCcCE-ECCCCEEEEEC
Confidence                8999999 99999999985

>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*

Probab=92.95  E-value=0.089  Score=63.36  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecC
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE  147 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~  147 (639)
                      ..+|++||.|++||+||+.  |--+..|-+.++|+|.=-.+.+
T Consensus      1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~f~d~~~ 1042 (1407)
T 3lu0_D         1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMID 1042 (1407)
T ss_dssp             EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEEEESCCB
T ss_pred             EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEEEeeecc
Confidence            4689999999999999996  7789999999999886433333

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=92.53  E-value=0.076  Score=49.31  Aligned_cols=59  Identities=19%  Similarity=0.251  Sum_probs=49.6

Q ss_pred             ceEEEEEEEecCCCeeec----CCeEEEEEcccceeEEecCCceEEEE--------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAK--------------------------------  142 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~----g~~l~~ietdK~~~~i~s~~~G~i~~--------------------------------  142 (639)
                      -.|+|+... ++.|.|-.    |+-++...++   ..+.||++|+|..                                
T Consensus        14 ~~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~   89 (154)
T 2gpr_A           14 CDGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN   89 (154)
T ss_dssp             SSEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred             CCeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence            458888864 77888777    8888877765   5899999999987                                


Q ss_pred             ---EEecCCCccccCCCcEEEEe
Q 006594          143 ---ILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       143 ---~~v~~g~~~v~~G~~l~~i~  162 (639)
                         ++|++||. |+.||+|+.++
T Consensus        90 gF~~~V~~Gd~-V~~G~~L~~~d  111 (154)
T 2gpr_A           90 GFESFVTQDQE-VNAGDKLVTVD  111 (154)
T ss_dssp             SEEECCCTTCE-ECTTCEEEEEC
T ss_pred             ceEEEEcCCCE-EcCCCEEEEEC
Confidence               48999999 99999999985

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=91.49  E-value=0.082  Score=49.51  Aligned_cols=59  Identities=22%  Similarity=0.238  Sum_probs=49.7

Q ss_pred             ceEEEEEEEecCCCeeec----CCeEEEEEcccceeEEecCCceEEEEE-------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEI----GDILCEIETDKATVEFESLEEGFLAKI-------------------------------  143 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~----g~~l~~ietdK~~~~i~s~~~G~i~~~-------------------------------  143 (639)
                      -.|+|+.+ .++.|.|-.    |+-++...+   ...+.||++|+|..+                               
T Consensus        19 ~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~---~~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~   94 (162)
T 1ax3_A           19 ITGEIHPI-TDVPDQVFSGKMMGDGFAILPS---EGIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGE   94 (162)
T ss_dssp             CSEEEEEG-GGSSSHHHHTCTTSEEEEEEEC---SSEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTT
T ss_pred             CceEEEEe-EECCCccccccceeceEEEEeC---CCcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCC
Confidence            46999886 778888777    788887665   457899999999988                               


Q ss_pred             ----EecCCCccccCCCcEEEEe
Q 006594          144 ----LVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       144 ----~v~~g~~~v~~G~~l~~i~  162 (639)
                          +|+.||. |+.|++|+.++
T Consensus        95 gF~~~V~~Gd~-V~~G~~L~~~d  116 (162)
T 1ax3_A           95 GFTSFVSEGDR-VEPGQKLLEVD  116 (162)
T ss_dssp             TEEESCCCCSE-ECSEEEEEEEC
T ss_pred             ccEEEEeCCCE-EcCCCEEEEEC
Confidence                8899999 99999999985

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=91.29  E-value=0.38  Score=50.06  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEc----ccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIET----DKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~iet----dK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      +-+....++.|+.|++||+|+++-.    .+...+|.||.+|+|.-..  ..-. |..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence            4455788999999999999999954    4567889999999995554  4445 888888998853

>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A

Probab=90.69  E-value=0.27  Score=45.95  Aligned_cols=58  Identities=28%  Similarity=0.349  Sum_probs=48.9

Q ss_pred             ccccceeecCCCCcccc----CCeeeEeecCcceeeEecCCCeeEEEE--------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI--------------------------------  269 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~ei~s~~~G~v~~i--------------------------------  269 (639)
                      .|+|+.+. ++.|.+-.    |+-++...++   ..+.||.+|+|..+                                
T Consensus        20 ~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~g   95 (161)
T 1f3z_A           20 SGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEG   95 (161)
T ss_dssp             CEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTTT
T ss_pred             CeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCCc
Confidence            46777766 67888766    8888888876   47899999999988                                


Q ss_pred             ---ecCCCCccccCCCeEEEEe
Q 006594          270 ---LAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       270 ---~~~~G~~~v~vG~~l~~i~  288 (639)
                         ++++||. |..|++|+.+.
T Consensus        96 F~~~V~~Gd~-V~~G~~L~~~d  116 (161)
T 1f3z_A           96 FKRIAEEGQR-VKVGDTVIEFD  116 (161)
T ss_dssp             EEECSCTTCE-ECTTCEEEEEC
T ss_pred             cEEEEeCcCE-ECCCCEEEEEC
Confidence               8999999 99999999984

>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1

Probab=89.51  E-value=0.36  Score=44.72  Aligned_cols=58  Identities=17%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             ccccceeecCCCCcccc----CCeeeEeecCcceeeEecCCCeeEEE---------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAK---------------------------------  268 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~ei~s~~~G~v~~---------------------------------  268 (639)
                      .|+|+.+. ++.|.+-.    |+-++...++   ..+.||.+|+|..                                 
T Consensus        15 ~G~vv~l~-~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~g   90 (154)
T 2gpr_A           15 DGTIITLD-EVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGNG   90 (154)
T ss_dssp             SEEEECGG-GSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTCS
T ss_pred             CeEEEEee-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCCc
Confidence            46777764 77888776    8888888876   4899999999997                                 


Q ss_pred             --EecCCCCccccCCCeEEEEe
Q 006594          269 --ILAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       269 --i~~~~G~~~v~vG~~l~~i~  288 (639)
                        +++++||. |..|++|+.+.
T Consensus        91 F~~~V~~Gd~-V~~G~~L~~~d  111 (154)
T 2gpr_A           91 FESFVTQDQE-VNAGDKLVTVD  111 (154)
T ss_dssp             EEECCCTTCE-ECTTCEEEEEC
T ss_pred             eEEEEcCCCE-EcCCCEEEEEC
Confidence              48999999 99999999884

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=89.01  E-value=0.46  Score=44.10  Aligned_cols=49  Identities=16%  Similarity=0.070  Sum_probs=41.4

Q ss_pred             eEEEEEEEecCCCeeecCCeEEEEEcccceeE-EecCCceEEEEEEecCC
Q 006594          100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVE-FESLEEGFLAKILVPEG  148 (639)
Q Consensus       100 eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~-i~s~~~G~i~~~~v~~g  148 (639)
                      ||-.+-..+.+||.|.+||.|+-|.|.|-.+- +.||.+|+|.-+.=-++
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~p~  157 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPS  157 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEETT
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEecCC
Confidence            55566778999999999999999999999987 89999999976654433

>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}

Probab=87.17  E-value=0.99  Score=46.92  Aligned_cols=60  Identities=20%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             cccceeecCCCCccccCCeeeEeec----CcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIET----DKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vet----dK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      +-+....++.|+.|++||+|+++-.    .+...+|.||.+|+|.-..  .... |..|+.|+.|..
T Consensus       265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p~-V~~Gd~l~~ia~  328 (332)
T 2qj8_A          265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAMY-VQGNEEVAILAR  328 (332)
T ss_dssp             SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSEE-ECTTCEEEEEEE
T ss_pred             CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCCe-eCCCCEEEEEee
Confidence            3455677889999999999999954    5677899999999997764  4444 788888988853

>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A

Probab=86.80  E-value=0.41  Score=44.70  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             ccccceeecCCCCcccc----CCeeeEeecCcceeeEecCCCeeEEEE--------------------------------
Q 006594          226 QGNIAKWRKNEGDKIEV----GDVICEIETDKATLEFECLEEGYLAKI--------------------------------  269 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~----gd~l~~vetdK~~~ei~s~~~G~v~~i--------------------------------  269 (639)
                      .|+|+.+ .++.|.+-.    |+-++...++   ..+.||.+|+|..+                                
T Consensus        20 ~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G~g   95 (162)
T 1ax3_A           20 TGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKGEG   95 (162)
T ss_dssp             SEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTTTT
T ss_pred             ceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCCCc
Confidence            4777776 567787766    7888877763   47899999999988                                


Q ss_pred             ---ecCCCCccccCCCeEEEEe
Q 006594          270 ---LAPEGSKDVAVGQPIAITV  288 (639)
Q Consensus       270 ---~~~~G~~~v~vG~~l~~i~  288 (639)
                         ++++||. |..|++|+.+.
T Consensus        96 F~~~V~~Gd~-V~~G~~L~~~d  116 (162)
T 1ax3_A           96 FTSFVSEGDR-VEPGQKLLEVD  116 (162)
T ss_dssp             EEESCCCCSE-ECSEEEEEEEC
T ss_pred             cEEEEeCCCE-EcCCCEEEEEC
Confidence               8899999 99999999884

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=86.45  E-value=0.58  Score=44.77  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=25.3

Q ss_pred             eeecCCCCccccCCeeeEeecCcceeeEecCCCeeEE
Q 006594          231 KWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLA  267 (639)
Q Consensus       231 ~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~  267 (639)
                      .++|++|+.|++||.||+-.      .|-+..+|+|.
T Consensus        22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~   52 (193)
T 2xha_A           22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIV   52 (193)
T ss_dssp             EESCCTTCEECTTCEEEEEC------CEECSSCEEEE
T ss_pred             EEEECCCCEEcCCCEEEEeC------cEEEccCEEEE
Confidence            57899999999999999855      56677777764

>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}

Probab=83.74  E-value=0.91  Score=43.50  Aligned_cols=44  Identities=18%  Similarity=0.290  Sum_probs=38.2

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCc
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK  150 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~  150 (639)
                      ..+|++||.|++|++||+.  |..+..|-+.++|+|.=-.+.+|.+
T Consensus        63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G~t  106 (190)
T 2auk_A           63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDGQT  106 (190)
T ss_dssp             EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBTTT
T ss_pred             EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCCcc
Confidence            5799999999999999986  8999999999999997666666654

>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}

Probab=81.78  E-value=1.7  Score=40.26  Aligned_cols=45  Identities=16%  Similarity=0.122  Sum_probs=39.1

Q ss_pred             ccccceeecCCCCccccCCeeeEeecCcceee-EecCCCeeEEEEe
Q 006594          226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLE-FECLEEGYLAKIL  270 (639)
Q Consensus       226 ~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~e-i~s~~~G~v~~i~  270 (639)
                      +|--+-..+.+|+.|.+||.|+-|.|-|-.+- +.||.+|+|.-+.
T Consensus       108 eG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~  153 (169)
T 3d4r_A          108 EGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMN  153 (169)
T ss_dssp             CSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             CceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEE
Confidence            46666677899999999999999999999874 8999999997764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	639
d1scza_	233	c.43.1.1 (A:) Dihydrolipoamide succinyltransferase	9e-62
d1b5sa_	242	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	4e-48
d1q23a_	214	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	1e-44
d3claa_	213	c.43.1.1 (A:) Chloramphenicol acetyltransferase, C	5e-44
d1dpba_	243	c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {	2e-39
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	3e-28
d1y8ob1	102	b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa	4e-26
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	7e-21
d1k8ma_	87	b.84.1.1 (A:) Lipoyl domain of the mitochondrial b	2e-18
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	3e-20
d1pmra_	80	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	1e-19
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	9e-19
d1ghja_	79	b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate	8e-18
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-18
d1laba_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-17
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-14
d1gjxa_	81	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	5e-13
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	9e-13
d1qjoa_	80	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	3e-11
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	2e-12
d1iyua_	79	b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac	7e-12
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	9e-11
d1dcza_	77	b.84.1.1 (A:) Biotin carboxyl carrier domain of tr	1e-09
d2cyua1	39	a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoa	2e-07
d1w85i_	42	a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl	4e-07
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	8e-04
d1bdoa_	80	b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carbox	0.002

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  202 bits (516), Expect = 9e-62
 Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 11/234 (4%)

Query: 410 EDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKEL----KEKHNTKVSVND 465
           +  P T++RK +A RLLE+K +T  L   ++V + P++  RK+     +++H  ++    
Sbjct: 5   KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMS 64

Query: 466 IVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISA 525
             +KAV  ALK  PE NA  D    ++V  +  D+S+AV+T +GL+TP++R+ D   ++ 
Sbjct: 65  FYVKAVVEALKRYPEVNASID--GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMAD 122

Query: 526 ISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQV 585
           I  ++KELA K R GKL   +  GG F+I+N G+F       IINPPQ+ IL +      
Sbjct: 123 IEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDR 182

Query: 586 VEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
              V     N    ++  M L LS DHR+ +G+    F   +     D  RLLL
Sbjct: 183 PMAV-----NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL 231

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  166 bits (422), Expect = 4e-48
 Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 8/230 (3%)

Query: 413 PNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKE---LKEKHNTKVSVNDIVIK 469
             + IR+ IA+ ++ SK   PH+ L  +  +  L++ RK+   +  +   K++    V+K
Sbjct: 18  KMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVK 77

Query: 470 AVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISME 529
           A+  AL+  P  N   D E  EI+     +I IA  T++GL+ P++++AD+K I A++ E
Sbjct: 78  ALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQE 137

Query: 530 VKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPV 589
           + ELAEKAR GKL P E +G + +I+N+G      F  +IN P+  IL +GR   + E  
Sbjct: 138 INELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGR---IAEKP 194

Query: 590 IGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
           I  DG         + L+LS DHR+ +G       + +    SD   LL+
Sbjct: 195 IVRDGE--IVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM 242

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  156 bits (395), Expect = 1e-44
 Identities = 27/201 (13%), Positives = 49/201 (24%), Gaps = 19/201 (9%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
                     +  + +   L   K+       K       I  +A  +   PE       
Sbjct: 22  QSVAQCTYNQTVQLDITAFLKTVKK------NKHKFYPAFIHILARLMNAHPEFRMAMK- 74

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHE 546
             GE+V+ D++     V  E+      + +              +            P  
Sbjct: 75  -DGELVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKG 133

Query: 547 FQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNL 606
           F    F +S         F   +         V    +         G++       M L
Sbjct: 134 FIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGKYYT-----QGDK-----VLMPL 183

Query: 607 TLSADHRVFEGKVGGAFFSAL 627
            +   H V +G   G   + L
Sbjct: 184 AIQVHHAVCDGFHVGRMLNEL 204

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

 Score =  154 bits (391), Expect = 5e-44
 Identities = 23/209 (11%), Positives = 60/209 (28%), Gaps = 16/209 (7%)

Query: 428 SKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV 487
             +      L+S + +  L     +      +      ++I  +A A+    E       
Sbjct: 21  RHRLPCGFSLTSKIDITTLKKSLDD------SAYKFYPVMIYLIAQAVNQFDELRMAIK- 73

Query: 488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEF 547
              E+++ D++D    V  ++      +       I    +    + E+ ++      + 
Sbjct: 74  -DDELIVWDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQG 132

Query: 548 QGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLT 607
                 + N+   P   F +                 +       +G+        + L+
Sbjct: 133 VTPENHL-NISALPWVNFDSFNLNVANFTDYFAP--IITMAKYQQEGDR-----LLLPLS 184

Query: 608 LSADHRVFEGKVGGAFFSALCSNFSDIRR 636
           +   H V +G     F + L    +   +
Sbjct: 185 VQVHHAVCDGFHVARFINRLQELCNSKLK 213

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score =  143 bits (360), Expect = 2e-39
 Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 8/235 (3%)

Query: 408 SFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVN 464
             E+ P T++ ++ A  L  S  N PH+       +  L +FR   K   EK   K++V 
Sbjct: 14  EIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVL 73

Query: 465 DIVIKAVAVALKNVPEANAYWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSIS 524
            +++KA A  LK +P+ N+        ++    + I  AV T  GL+ P++RN DQKS+ 
Sbjct: 74  PLLLKACAYLLKELPDFNSSLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLL 133

Query: 525 AISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQFCAIINPPQAGILAVGRGNQ 584
            ++ E  ELAEKAR+ KL     QG  F+IS+LG      F  I+N P+  IL V + + 
Sbjct: 134 QLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASM 193

Query: 585 VVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL 639
                      +       + L+LS D RV  G     F   L    +DIR +LL
Sbjct: 194 QPVWD-----GKAFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL 243

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (266), Expect = 3e-28
 Identities = 51/86 (59%), Positives = 64/86 (74%)

Query: 83  LPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAK 142
            P H  V +PALSPTM+ G + +W KK G+K+  GD+L EIETDKAT+ FE  EEG+LAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAK 61

Query: 143 ILVPEGSKDVPVGQPIAITVEDADDI 168
           ILVPEG++DVP+G P+ I VE   DI
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADI 87

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 4e-26
 Identities = 48/101 (47%), Positives = 66/101 (65%), Gaps = 1/101 (0%)

Query: 209 LPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAK 268
            PP + + +PALSPTM  G + +W K  G+K+  GD++ EIETDKAT+ FE  EEGYLAK
Sbjct: 2   YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAK 61

Query: 269 ILAPEGSKDVAVGQPIAITVEDPGDVGTVKNSV-TSGAEVK 308
           IL PEG++DV +G P+ I VE   D+    +   T   ++K
Sbjct: 62  ILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPTEVTDLK 102

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.2 bits (211), Expect = 7e-21
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +  +   + +  + +W  KEGD +   D +CE+++DKA+V   S  +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 151 DVPVGQPIA-ITVEDADDIQ 169
              VG+P+  I  E   D++
Sbjct: 69  -AYVGKPLVDIETEALKDLE 87

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +  +   + +  + +W   EGD +   D ICE+++DKA++      +G + K+       
Sbjct: 9   LSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI 68

Query: 277 DVAVGQPIA-ITVEDPGDV 294
              VG+P+  I  E   D+
Sbjct: 69  -AYVGKPLVDIETEALKDL 86

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 83.3 bits (206), Expect = 3e-20
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P L  +++   +A W KK GD +   ++L EIETDK  +E  +  +G L  +L  EG+ 
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

Query: 151 DVPVGQPIAITVEDAD 166
            V   Q +   + + +
Sbjct: 67  -VTSRQILGR-LREGN 80

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P L  ++    +A W K  GD +   +V+ EIETDK  LE     +G L  +L  EG+ 
Sbjct: 7   VPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT 66

Query: 277 DVAVGQPIAITVE 289
            V   Q +    E
Sbjct: 67  -VTSRQILGRLRE 78

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 78.7 bits (194), Expect = 9e-19
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 89  VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEG 148
           +  P    +++ G +A W KK G+ ++  +++ +IETDK  +E  +  +G +A+I+  EG
Sbjct: 4   IKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEG 63

Query: 149 SKDVPVGQPIAITVED 164
              V  G+ +    E 
Sbjct: 64  DT-VLSGELLGKLTEG 78

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

 Score = 76.0 bits (187), Expect = 8e-18
 Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
            P    ++  G +A W K  G+ ++  ++I +IETDK  +E     +G +A+I+  EG  
Sbjct: 6   APTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT 65

Query: 277 DVAVGQPIAITVEDPG 292
            V  G+ +   + + G
Sbjct: 66  -VLSGELLGK-LTEGG 79

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 77.5 bits (191), Expect = 3e-18
 Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +   + +G I KW  K GD++   D+LCE++ DKA VE  S  +G + +ILVPEG+ 
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

Query: 151 DVPVGQPIAI 160
              VGQ +  
Sbjct: 66  -ATVGQTLIT 74

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 74.4 bits (183), Expect = 3e-17
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 2/76 (2%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +   +++G I KW    GD++   DV+CE++ DKA +E     +G + +IL PEG+ 
Sbjct: 6   LPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV 65

Query: 277 DVAVGQPIAITVEDPG 292
              VGQ +   ++ PG
Sbjct: 66  -ATVGQTLIT-LDAPG 79

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 65.2 bits (159), Expect = 7e-14
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +       +I       GD I + D L  +ETDKAT++  +   G + ++ V  G K
Sbjct: 7   VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65

Query: 151 DVPVGQPIAITVEDAD 166
            +  G  I +   +  
Sbjct: 66  -ISEGGLIVVVEAEGT 80

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

 Score = 62.5 bits (152), Expect = 5e-13
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +       +I     N GD I V D +  +ETDKAT++      G + ++    G K
Sbjct: 7   VPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK 65

Query: 277 DVAVGQPIAITVEDPGD 293
            ++ G  I + VE  G 
Sbjct: 66  -ISEGGLIVV-VEAEGT 80

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 61.8 bits (150), Expect = 9e-13
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 91  MPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSK 150
           +P +     +  + +   K GDK+     L  +E DKA++E  +   G + ++ V  G K
Sbjct: 7   VPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 64

Query: 151 DVPVGQPIAITVEDAD 166
            V  G  I I   +  
Sbjct: 65  -VKTGSLIMIFEVEGA 79

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 57.5 bits (139), Expect = 3e-11
 Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 217 MPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSK 276
           +P +    ++  + +     GDK+     +  +E DKA++E      G + ++    G K
Sbjct: 7   VPDIG--GDEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK 64

Query: 277 DVAVGQPIAITVEDPGD 293
            V  G  I I  E  G 
Sbjct: 65  -VKTGSLIMI-FEVEGA 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 88  VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE 147
           ++ +P +      G + +   K GD IE+   L  +E+ KA++E  S + G +  + V  
Sbjct: 3   IIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59

Query: 148 GSKDVPVGQPIAITVEDADDIQ 169
           G K +  G  I   +E A   +
Sbjct: 60  GDK-LKEGDAIIE-LEPAAGAR 79

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 59.1 bits (143), Expect = 7e-12
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 214 VLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPE 273
           ++ +P +      G + +     GD IEV   +  +E+ KA++E    + G +  +    
Sbjct: 3   IIRVPDI---GGDGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKL 59

Query: 274 GSKDVAVGQPIAI 286
           G K +  G  I  
Sbjct: 60  GDK-LKEGDAIIE 71

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 56.1 bits (135), Expect = 9e-11
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 100 QGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIA 159
            G ++K   KEGD ++ G  +  +E  K   E  +  +G + K+LV E    V  GQ + 
Sbjct: 16  AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLI 74

Query: 160 I 160
            
Sbjct: 75  K 75

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

 Score = 53.0 bits (127), Expect = 1e-09
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 226 QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIA 285
            G ++K    EGD ++ G  +  +E  K   E     +G + K+L  E    V  GQ + 
Sbjct: 16  AGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLI 74

Query: 286 I 286
            
Sbjct: 75  K 75

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 39

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score = 45.2 bits (108), Expect = 2e-07
 Identities = 14/38 (36%), Positives = 24/38 (63%)

Query: 331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
           +SP+ + L+ EH LDAS+++ +G  G L + DV   + 
Sbjct: 1   LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 38

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 42

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 44.5 bits (106), Expect = 4e-07
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 330 KISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK 368
              PS +    E G+D   +Q +G  G +LK D+ A + 
Sbjct: 3   IAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 41

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 82  ELPSHTV----VGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEE 137
           E+  H V    VG    +P+      AK   + G K+ +GD LC +E  K   + E+ + 
Sbjct: 1   EISGHIVRSPMVGTFYRTPS----PDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKS 56

Query: 138 GFLAKILVPEGSKDVPVGQPIAI 160
           G +  ILV  G   V   +P+ +
Sbjct: 57  GTVKAILVESGQP-VEFDEPLVV 78

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Length = 80

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

 Score = 34.9 bits (80), Expect = 0.002
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 230 AKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAI 286
           AK     G K+ VGD +C +E  K   + E  + G +  IL   G   V   +P+ +
Sbjct: 23  AKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVV 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	639
d1dpba_	243	Dihydrolipoamide acetyltransferase {Azotobacter vi	100.0
d1scza_	233	Dihydrolipoamide succinyltransferase {Escherichia	100.0
d1b5sa_	242	Dihydrolipoamide acetyltransferase {Bacillus stear	100.0
d1q23a_	214	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d3claa_	213	Chloramphenicol acetyltransferase, CAT {Escherichi	100.0
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.87
d1y8ob1	102	Lipoyl domain of dihydrolipoamide acetyltransferas	99.86
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.85
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.84
d1ghja_	79	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.82
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.81
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.79
d1k8ma_	87	Lipoyl domain of the mitochondrial branched-chain	99.79
d1pmra_	80	Lipoyl domain of the 2-oxoglutarate dehydrogenase	99.78
d1laba_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.78
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.75
d1gjxa_	81	Lipoyl domain of dihydrolipoamide acetyltransferas	99.72
d1qjoa_	80	Lipoyl domain of dihydrolipoamide acetyltransferas	99.7
d1iyua_	79	Lipoyl domain of dihydrolipoamide acetyltransferas	99.67
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.54
d1dcza_	77	Biotin carboxyl carrier domain of transcarboxylase	99.47
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.35
d1w85i_	42	E3/E1 binding domain of dihydrolipoyl acetyltransf	99.33
d2cyua1	39	E3-binding domain of dihydrolipoamide succinyltran	99.32
d1bdoa_	80	Biotinyl domain of acetyl-CoA carboxylase {Escheri	99.24
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.84
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.71
d1onla_	127	Protein H of glycine cleavage system {Thermus ther	96.27
d1hpca_	131	Protein H of glycine cleavage system {Pea (Pisum s	96.16
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	95.16
d1vf7a_	237	Multidrug resistance protein MexA domain {Pseudomo	93.49
d1e2wa2	64	Cytochrome f, small domain {Chlamydomonas reinhard	85.36

>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=3.8e-58  Score=463.04  Aligned_cols=228  Identities=33%  Similarity=0.442  Sum_probs=219.0

Q ss_pred             CCcccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh---hhCCCCcCHHHHHHHHHHHHHhhCcccce
Q 006594          407 DSFEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANA  483 (639)
Q Consensus       407 ~~~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~---~~~g~kls~~~~likAva~Al~~~P~ln~  483 (639)
                      +..+++|++++||.||++|++||+++||||++.++|+|+|+++|++++   ++.|.++|+++|++||++.||++||.+|+
T Consensus        13 G~~e~vpls~~Rk~iA~~m~~S~~~iPh~~~~~evD~t~l~~~r~~l~~~~~~~~~k~t~~~~iikA~a~Al~~~P~~Ns   92 (243)
T d1dpba_          13 GEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEKAGVKLTVLPLLLKACAYLLKELPDFNS   92 (243)
T ss_dssp             SCCCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHSGGGGE
T ss_pred             CCcEEEECcHHHHHHHHHHHHhhccCCEEEEEEEEecchHHHhhhhhhhhhhhcCccccHHHHHHHHHHHHHHHhhhhhh
Confidence            457789999999999999999999999999999999999999998876   45889999999999999999999999999


Q ss_pred             eeccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCcc
Q 006594          484 YWDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVD  563 (639)
Q Consensus       484 ~~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~  563 (639)
                      .|+++..++++++++|||+||++++||++|||++++++|+.+|++++++|.+++|+|+|+++|++||||||||+|++|++
T Consensus        93 ~~~~~~~~~~~~~~inigiAv~~~~GL~vPVI~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~d~~ggTfTiSNlG~~G~~  172 (243)
T d1dpba_          93 SLAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGGT  172 (243)
T ss_dssp             EECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEECTTTCCS
T ss_pred             ccccccccceeecccceeeeeccCcceeeeeecchhhhhHHHHHHHHHHHHHHhhhcccccccccCceeEEeccCCccce
Confidence            99877567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          564 QFCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       564 ~~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +|+|||||||++||++|++.++|++++|     ++++|++|+|||+||||++||+++|+||++|+++||||+.|||
T Consensus       173 ~~tpiInppq~aIlgvG~i~~~pv~~~~-----~i~~r~~m~ltls~DHRvidGa~aa~FL~~l~~~lE~P~~lll  243 (243)
T d1dpba_         173 AFTPIVNAPEVAILGVSKASMQPVWDGK-----AFQPRLMLPLSLSYDCRVINGAAAARFTKRLGDLLADIRAILL  243 (243)
T ss_dssp             CCCCCCCTTSSEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEEETTTSCHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             eEEeeeccccceeeecccceeeEEEECC-----EEEEEEEEEEEEEeecccccHHHHHHHHHHHHHHHhCHHHHhC
Confidence            9999999999999999999999988655     8999999999999999999999999999999999999999986

>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.6e-58  Score=461.89  Aligned_cols=224  Identities=36%  Similarity=0.561  Sum_probs=215.9

Q ss_pred             cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh----hhCCCCcCHHHHHHHHHHHHHhhCccccee
Q 006594          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK----EKHNTKVSVNDIVIKAVAVALKNVPEANAY  484 (639)
Q Consensus       409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~----~~~g~kls~~~~likAva~Al~~~P~ln~~  484 (639)
                      .+++|+++|||.||++|.+|++++||||++.+||+|+|+++|++++    ++.|.++||++|++||+++||.+||.+|++
T Consensus         4 ee~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na~   83 (233)
T d1scza_           4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS   83 (233)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred             CcccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhheE
Confidence            4568999999999999999999999999999999999999999876    356899999999999999999999999999


Q ss_pred             eccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccc
Q 006594          485 WDVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQ  564 (639)
Q Consensus       485 ~~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~  564 (639)
                      |++++  +++++++|||+||++++||++|||++++++|+.+|+++++++.+++|+|+|+++|++||||||||+|++|+++
T Consensus        84 ~~~~~--i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~  161 (233)
T d1scza_          84 IDGDD--VVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLM  161 (233)
T ss_dssp             EETTE--EECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCC
T ss_pred             EcCCe--EEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCcccccee
Confidence            99865  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          565 FCAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       565 ~~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      |+|||||||++||++|++.++|++++|     ++++|++|+|||+||||++||+++|+||++|+++||||+.||+
T Consensus       162 ~tpii~ppq~aIl~vG~i~~~pv~~~g-----~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  231 (233)
T d1scza_         162 STPIINPPQSAILGMHAIKDRPMAVNG-----QVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLL  231 (233)
T ss_dssp             CCCCCCTTCSEEEEEEEEEEEEEEETT-----EEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred             eeeecCCCCceEEecccceeeccccCC-----eEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhh
Confidence            999999999999999999999988776     8999999999999999999999999999999999999999985

>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.1e-57  Score=458.20  Aligned_cols=226  Identities=33%  Similarity=0.491  Sum_probs=217.2

Q ss_pred             cccccCcHHHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHh---hhCCCCcCHHHHHHHHHHHHHhhCcccceee
Q 006594          409 FEDFPNTQIRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELK---EKHNTKVSVNDIVIKAVAVALKNVPEANAYW  485 (639)
Q Consensus       409 ~~~~~~s~~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~---~~~g~kls~~~~likAva~Al~~~P~ln~~~  485 (639)
                      .+++|+++|||+||++|.+|++++||||++.++|+|+|+++|+++|   ++.|.|+||++|++||+++||++||.+|++|
T Consensus        14 ~~~~~ls~~rk~ia~~m~~S~~~iPh~t~~~evDvt~l~~~r~~lk~~~~~~g~klT~~~~likA~a~AL~~~P~~Na~~   93 (242)
T d1b5sa_          14 ETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIAAEKGIKLTFLPYVVKALVSALREYPVLNTSI   93 (242)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHTTSSCCCEEEEEEECHHHHHHHHHTHHHHHHTTCCCCSHHHHHHHHHHHHHHCGGGSCCB
T ss_pred             ceeeeCcHHHHHHHHHHHHhhccCCeEEEEEEEeehhHHHhhhhhhhhhhhcccccchhhHHHHHHHHHHHHhhhhheEE
Confidence            4457999999999999999999999999999999999999999986   4679999999999999999999999999999


Q ss_pred             ccCCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCCCCCCCCCCCeEEEEeCCCCCccce
Q 006594          486 DVEKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGKLAPHEFQGGTFSISNLGMFPVDQF  565 (639)
Q Consensus       486 ~~~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~l~~~d~~ggtftISnlG~~g~~~~  565 (639)
                      +++.+.+++++++|+|+||++++||++|||++++++++.+|+++++++.+++|+|+|.++|++||||||||+|++|+.+|
T Consensus        94 ~~~~~~i~~~~~v~igiAv~~~~gL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~gkl~~~dl~ggtftisnlG~~G~~~f  173 (242)
T d1b5sa_          94 DDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWF  173 (242)
T ss_dssp             CTTSSCBCCCSSCCEEECEECSSCEECCEETTGGGCCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSCEEEECTTTCCSCC
T ss_pred             cCCCCEEEEeeeeEEEEEecCCCceEeeeecccccccHHHHHHHHHHHHHHHHcCCCChhhccCcceEEeecCCCCccce
Confidence            88656699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCcceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhhhcC
Q 006594          566 CAIINPPQAGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRRLLL  639 (639)
Q Consensus       566 ~pii~~p~~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~ll~  639 (639)
                      +|++|+||++||++|++.++|++++|     ++++|++|+|||+||||++||+++++||+.|+++||||+.|||
T Consensus       174 tpii~~pq~ail~vG~i~~~pv~~dg-----~i~~r~~m~lslt~DHRviDGa~aa~Fl~~l~~~lE~P~~lll  242 (242)
T d1b5sa_         174 TPVINHPEVAILGIGRIAEKPIVRDG-----EIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLLM  242 (242)
T ss_dssp             CCCCCTTCCEEEEECCCEEEEEECSS-----SEEEEEEEEEEEEECTTTSCSHHHHHHHHHHHHHHHCGGGTTC
T ss_pred             ecccccccceEEeccceEEEEEEECC-----eEEEEEEEEEEEEEEcchhChHHHHHHHHHHHHHHhCHHHHhC
Confidence            99999999999999999999988766     8999999999999999999999999999999999999999986

>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.5e-41  Score=332.78  Aligned_cols=203  Identities=14%  Similarity=0.099  Sum_probs=180.3

Q ss_pred             cccccCcH-HHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeecc
Q 006594          409 FEDFPNTQ-IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDV  487 (639)
Q Consensus       409 ~~~~~~s~-~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~  487 (639)
                      ++.+.++. -||......  ++...|||+++++||+|+|++++|+.      ++||+++++||+++||++||+||++|++
T Consensus         4 ~k~ID~~~W~R~~~f~~f--~~~~~P~f~it~~vDvT~l~~~~K~~------~~sf~~~~~~av~~Al~~~P~~n~~~~~   75 (214)
T d1q23a_           4 YTTVDISQWHRKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKKN------KHKFYPAFIHILARLMNAHPEFRMAMKD   75 (214)
T ss_dssp             EEECCGGGCTTHHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHHT------TCCHHHHHHHHHHHHHTTCGGGSEEEET
T ss_pred             ceEeccccCcCHHHHHHH--hCCCCCeEEEEEEEcHHHHHHHHHHc------CCCcHHHHHHHHHHHHHhChHhheEEcC
Confidence            44455555 366655554  45789999999999999999999987      7999999999999999999999999987


Q ss_pred             CCCeEEEcCCccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCC-CCCCCCCCCeEEEEeCCCCCcccee
Q 006594          488 EKGEIVLCDAIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQGGTFSISNLGMFPVDQFC  566 (639)
Q Consensus       488 ~~~~i~~~~~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~-l~~~d~~ggtftISnlG~~g~~~~~  566 (639)
                      ++  +++|+.+|+|+||++++|+++|++++++.+++.+|++++.+++.++++++ |.+++++++||+|||+||+|++.++
T Consensus        76 ~~--i~~~~~i~i~iav~~~~gl~v~~i~~~~~~~~~ef~~~~~~~~~~~~~~~~l~~~~~~~~tftiSnlg~~~ft~~~  153 (214)
T d1q23a_          76 GE--LVIWDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFD  153 (214)
T ss_dssp             TE--EEEESCCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTCCCSSEEEEEECTTCCCSEEE
T ss_pred             Cc--eeEcCccCeEEEEEcCCCeEEeEEecCchhhHHHHHHHHHHHHHHHHhCCCCCCccccCCEEEEEcCCCccccCcc
Confidence            54  99999999999999999999999999999999999999999989888865 8899999999999999999999888


Q ss_pred             eccCCCc---ceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhch
Q 006594          567 AIINPPQ---AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDI  634 (639)
Q Consensus       567 pii~~p~---~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P  634 (639)
                      ..++.+.   +|++++|++.++    +|         |.+|||||++|||++||+|+|+||+.|+++||+.
T Consensus       154 ~~~~~~~~~~vpii~~Gk~~~~----~~---------r~~mplsls~dHrvvDG~~~a~Fl~~lq~~le~~  211 (214)
T d1q23a_         154 LNVANMDNFFAPVFTMGKYYTQ----GD---------KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDEW  211 (214)
T ss_dssp             EEESCCTTCCSCEEEECCCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCccceeeEEEecceEEE----CC---------EEEEEEEEEecccccchHHHHHHHHHHHHHHhhc
Confidence            6555543   789999998764    33         7899999999999999999999999999999984

>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Chloramphenicol acetyltransferase, CAT
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.3e-39  Score=316.88  Aligned_cols=194  Identities=14%  Similarity=0.146  Sum_probs=170.3

Q ss_pred             HHHHHHHHhhhccCCcceEEeeeeeechHHHHHHHHHhhhCCCCcCHHHHHHHHHHHHHhhCcccceeeccCCCeEEEcC
Q 006594          417 IRKVIARRLLESKQNTPHLYLSSDVVLDPLLSFRKELKEKHNTKVSVNDIVIKAVAVALKNVPEANAYWDVEKGEIVLCD  496 (639)
Q Consensus       417 ~r~~ia~~m~~S~~~iP~~~~~~evDvt~l~~~rk~~~~~~g~kls~~~~likAva~Al~~~P~ln~~~~~~~~~i~~~~  496 (639)
                      -||......  ++.+.|||+++.+||+|+|++++|+.      ++||+++++||+++||++||+||++|++++  +++|+
T Consensus        12 ~Rk~~f~~f--~~~~~P~~~~t~~vDvT~l~~~~K~~------~~sf~~~~~~a~~~Al~~~P~~n~~~~~~~--i~~~~   81 (213)
T d3claa_          12 VRREHFEFY--RHRLPCGFSLTSKIDITTLKKSLDDS------AYKFYPVMIYLIAQAVNQFDELRMAIKDDE--LIVWD   81 (213)
T ss_dssp             TTHHHHHHH--HHTSCCEEEEEEEEECHHHHHHHHTS------SCCHHHHHHHHHHHHHTTCGGGSEEEETTE--EEEES
T ss_pred             ccHHHHHHH--hCCCCCEEEEEEEEeHHHHHHHHHHc------CCCeeHHHHHHHHHHHHhChHhhhEeccCe--EEEec
Confidence            466666665  34789999999999999999999877      899999999999999999999999998754  99999


Q ss_pred             CccEEEEEecCCCeEEeeeecCCcCCHHHHHHHHHHHHHHHHcCC-CCCCCCCC-CeEEEEeCCCCCccceeeccCCCc-
Q 006594          497 AIDISIAVATEKGLMTPIVRNADQKSISAISMEVKELAEKARAGK-LAPHEFQG-GTFSISNLGMFPVDQFCAIINPPQ-  573 (639)
Q Consensus       497 ~v~i~iAV~~~~gl~~pvI~~a~~~sl~ei~~~~~~l~~~ar~g~-l~~~d~~g-gtftISnlG~~g~~~~~pii~~p~-  573 (639)
                      ++|+|+||++++||++|+|++++.++|.+|+++++++++++|+++ +.+++..+ .+|++|++||++++   +++++++ 
T Consensus        82 ~i~~~~aV~~~~gl~vp~i~~~~~~~l~~f~~~~~~~~~~ar~~~~~~~~~~~~~~~~~is~l~~~~Ft---~i~~~~~~  158 (213)
T d3claa_          82 SVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFD---SFNLNVAN  158 (213)
T ss_dssp             CCEEEEEEEETTTTEEEEEECCCCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCS---CCCCCCSC
T ss_pred             ccceEEEEEcCCCeEEeeEecCCCCCHHHHHHHHHHHHHHHHhCCCCCccccCCCcEEEeeccCceEee---cccCCccc
Confidence            999999999999999999999999999999999999999999986 56666554 57888888887754   5555554 


Q ss_pred             -----ceEEEecCceEEEEEeeCCCCCcccEEEeEEEEEEEecccccChHHHHHHHHHHHHHHhchhh
Q 006594          574 -----AGILAVGRGNQVVEPVIGSDGNETPAVVTKMNLTLSADHRVFEGKVGGAFFSALCSNFSDIRR  636 (639)
Q Consensus       574 -----~ail~vG~~~~~~~~~~g~~G~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~Le~P~~  636 (639)
                           .+++.+|++.++    +|         |.+|||||++|||++||+|+|+||+.|+++||+|.+
T Consensus       159 ~~~~~~Pii~~Gk~~~~----~~---------r~~m~lsls~dHrviDG~~aa~Fl~~lk~~le~p~k  213 (213)
T d3claa_         159 FTDYFAPIITMAKYQQE----GD---------RLLLPLSVQVHHAVCDGFHVARFINRLQELCNSKLK  213 (213)
T ss_dssp             CTTCCSCEEEEECCEEE----TT---------EEEEEEEEEEETTTCCHHHHHHHHHHHHHHHTSCCC
T ss_pred             CccccccEEecCccEEE----CC---------EEEEEEEEEecccccccHHHHHHHHHHHHHHhCcCC
Confidence                 459999998765    33         889999999999999999999999999999999963

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=174.62  Aligned_cols=84  Identities=60%  Similarity=1.007  Sum_probs=79.5

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCC-ccccCCCcEEEEe
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGS-KDVPVGQPIAITV  162 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~-~~v~~G~~l~~i~  162 (639)
                      +.|++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+|+++|+|.++++++|| . |++|++||.|.
T Consensus         3 p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~-v~vG~~ia~i~   81 (102)
T d1y8ob1           3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRD-VPLGTPLCIIV   81 (102)
T ss_dssp             CSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCS-EETTCEEEEEE
T ss_pred             CCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEE-EcCCCEEEEEe
Confidence            788999999999999999999999999999999999999999999999999999999999999997 6 99999999997


Q ss_pred             cCCccc
Q 006594          163 EDADDI  168 (639)
Q Consensus       163 ~~~~~~  168 (639)
                      ..+++.
T Consensus        82 ~~~~~~   87 (102)
T d1y8ob1          82 EKEADI   87 (102)
T ss_dssp             SSGGGG
T ss_pred             cCCccc
Confidence            665543

>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.4e-22  Score=172.11  Aligned_cols=88  Identities=52%  Similarity=0.958  Sum_probs=81.6

Q ss_pred             CCCCceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          208 ELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       208 ~~~~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      +.|.|++|.||+||++|++|+|++|+|++||.|++||+||+|||||+++||+|+++|+|.++++++|+..|++|++|++|
T Consensus         1 ~~p~~iei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vETdK~~~ei~a~~~G~l~~i~v~eGd~~v~vG~~ia~i   80 (102)
T d1y8ob1           1 SYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCII   80 (102)
T ss_dssp             CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTCEEEEE
T ss_pred             CCCCCEEEECCCCCCCccEEEEEEEEeCCCCEEecCccEEEEEcCcEEEEEecCCcEEEEEEEEccCCEEEcCCCEEEEE
Confidence            36789999999999999999999999999999999999999999999999999999999999999997339999999999


Q ss_pred             ecCCCCcC
Q 006594          288 VEDPGDVG  295 (639)
Q Consensus       288 ~~~~~~~~  295 (639)
                      .+++++..
T Consensus        81 ~~~~~~~~   88 (102)
T d1y8ob1          81 VEKEADIS   88 (102)
T ss_dssp             ESSGGGGG
T ss_pred             ecCCcccc
Confidence            87666543

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=163.92  Aligned_cols=82  Identities=23%  Similarity=0.385  Sum_probs=78.1

Q ss_pred             CcceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           84 PSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        84 ~~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      ..++.|+||++|+++++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|+.|+.
T Consensus         2 ~~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~-v~~G~~l~~i~~   80 (87)
T d1k8ma_           2 GQVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIET   80 (87)
T ss_dssp             CCCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEEC
T ss_pred             CccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCE-ECCCCEEEEEEc
Confidence            4568999999999999999999999999999999999999999999999999999999999999999 999999999976


Q ss_pred             CCc
Q 006594          164 DAD  166 (639)
Q Consensus       164 ~~~  166 (639)
                      ++.
T Consensus        81 ~~~   83 (87)
T d1k8ma_          81 EAL   83 (87)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            543

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.84  E-value=1.1e-21  Score=161.94  Aligned_cols=77  Identities=27%  Similarity=0.553  Sum_probs=74.9

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      ++|+||++|++|++|+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++||. |++|++|+.|+++
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~-v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCE-ECCCCEEEEEeCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999 9999999999754

>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.82  E-value=9.1e-21  Score=156.36  Aligned_cols=77  Identities=27%  Similarity=0.572  Sum_probs=74.8

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      ++|+||+||++|++|+|.+|+|++||+|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|++|.++
T Consensus         2 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~a~~~G~v~~i~v~~Gd~-v~~G~~l~~i~~~   78 (79)
T d1ghja_           2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDT-VLSGELLGKLTEG   78 (79)
T ss_dssp             EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCE-ECTTCEEEEECCC
T ss_pred             cEEEcCCCCCCccEEEEEEEEcCCCCEEeeCccEEEEEcCceEEEEEeceeEEEEEEEcCCCCE-ECCCCEEEEEeCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999 9999999999765

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.81  E-value=1e-21  Score=162.47  Aligned_cols=77  Identities=36%  Similarity=0.624  Sum_probs=74.2

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      .+|+||++|++++||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++||. |++|++|+.|+.+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~-v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSE-ECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            4688999999999999999999999999999999999999999999999999999999999999 9999999999654

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=1.3e-21  Score=161.63  Aligned_cols=76  Identities=32%  Similarity=0.523  Sum_probs=74.1

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEec
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVE  163 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~  163 (639)
                      ++|+||++|++|++|+|++|+|++||+|++||+||+|||||++++|+||++|+|.++++++||. |++|++|+.|++
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~-v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCE-ECCCCEEEEEeC
Confidence            6799999999999999999999999999999999999999999999999999999999999999 999999999964

>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8.2e-20  Score=153.17  Aligned_cols=80  Identities=21%  Similarity=0.420  Sum_probs=76.1

Q ss_pred             CceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          211 PRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       211 ~~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      ..++++||+||+++++|+|++|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|..+
T Consensus         3 ~~~~~~lP~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEt~K~~~~v~A~~~G~I~~i~v~~G~~-v~~G~~l~~i~~~   81 (87)
T d1k8ma_           3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDI-AYVGKPLVDIETE   81 (87)
T ss_dssp             CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCE-ECTTSEEEEEECS
T ss_pred             ccEEEECCCCCCCceeEEEEEEEcCCCCEEecCCEEEEEEccCceEEEEeCCCEEEEEEEeCCCCE-ECCCCEEEEEEcC
Confidence            357899999999999999999999999999999999999999999999999999999999999999 9999999999754


Q ss_pred             C
Q 006594          291 P  291 (639)
Q Consensus       291 ~  291 (639)
                      +
T Consensus        82 ~   82 (87)
T d1k8ma_          82 A   82 (87)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of the 2-oxoglutarate dehydrogenase complex
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.3e-20  Score=155.69  Aligned_cols=76  Identities=33%  Similarity=0.535  Sum_probs=73.9

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEec
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVE  289 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~  289 (639)
                      ++|+||+||++|++|+|++|+|++||+|++||+||+|||||++++|+||++|+|.++++++|+. |++|++|++|.+
T Consensus         3 iei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEtdK~~~ev~a~~~G~l~~i~v~~Gd~-v~~G~~l~~i~e   78 (80)
T d1pmra_           3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTT-VTSRQILGRLRE   78 (80)
T ss_dssp             CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCE-ECSSSEEEBCCC
T ss_pred             eEEECCCCCCCccEEEEEEEEeCCCCEEcCCCEEEEEEcCceEEEEeccCCEEEEEEEeCCCCE-ECCCCEEEEEeC
Confidence            6799999999999999999999999999999999999999999999999999999999999999 999999999963

>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.78  E-value=1.7e-20  Score=154.94  Aligned_cols=77  Identities=31%  Similarity=0.625  Sum_probs=74.1

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      .+|+||+||+++++|+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|..+
T Consensus         2 ~ei~~P~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~ei~A~~~G~v~~i~v~~Gd~-v~~G~~l~~ie~~   78 (80)
T d1laba_           2 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTV-ATVGQTLITLDAP   78 (80)
T ss_dssp             BCSSCSCSSSTTCSEEEEECCCSSCCEECSSCCCEEEECSSCEEEECCSSCEECCCBSSCSSSE-ECSSSCSBCBBCS
T ss_pred             eEEECCCCCCCceeEEEEEEEeCCCCEEeeCcCEEEEEcccEEEEEEcCCCEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            4689999999999999999999999999999999999999999999999999999999999999 9999999999654

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=1.6e-19  Score=149.42  Aligned_cols=78  Identities=26%  Similarity=0.330  Sum_probs=73.9

Q ss_pred             cceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecC
Q 006594           85 SHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVED  164 (639)
Q Consensus        85 ~~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~  164 (639)
                      |.++|+||++|+  ++++|++|++++||.|++||+||+|||||++++|+|+.+|+|.++++++||. |++|++|+.|+.+
T Consensus         1 M~~ei~~P~lG~--~~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~e   77 (80)
T d1qjoa_           1 MVKEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVE   77 (80)
T ss_dssp             CEEEECCCCCSS--SCEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESC
T ss_pred             CCeEEECCCCCC--CeEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCE-ECCCCEEEEEecC
Confidence            468999999997  4899999999999999999999999999999999999999999999999999 9999999999754


Q ss_pred             C
Q 006594          165 A  165 (639)
Q Consensus       165 ~  165 (639)
                      +
T Consensus        78 g   78 (80)
T d1qjoa_          78 G   78 (80)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.78  E-value=2.8e-20  Score=154.37  Aligned_cols=78  Identities=24%  Similarity=0.369  Sum_probs=74.3

Q ss_pred             ceEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594           86 HTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus        86 ~~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      +++|+||++|+ +.+++|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+. |++|++|+.|+.++
T Consensus         2 iiei~~P~lg~-~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~-v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           2 LVELKVPDIGG-HENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEAEG   79 (81)
T ss_dssp             CEECCCCCCSS-CSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECCSC
T ss_pred             cEEEECCCCCC-CcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCE-ECCCCEEEEEeccc
Confidence            57899999995 79999999999999999999999999999999999999999999999999999 99999999997544

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.75  E-value=1.5e-18  Score=143.15  Aligned_cols=76  Identities=26%  Similarity=0.395  Sum_probs=71.7

Q ss_pred             eEEecCCCCCCCceEEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCCc
Q 006594           87 TVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDAD  166 (639)
Q Consensus        87 ~~v~~p~~~~~~~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~~  166 (639)
                      ..|+||++|+   +|+|++|+|++||.|++||+||+||+||+.++|+|+.+|+|.++++++||. |++|++|+.|+..+.
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~~~~   77 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPAAG   77 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECCCS
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCE-ECCCCEEEEEecCcc
Confidence            5689999985   799999999999999999999999999999999999999999999999999 999999999976543

>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.72  E-value=1e-18  Score=144.85  Aligned_cols=78  Identities=27%  Similarity=0.396  Sum_probs=73.7

Q ss_pred             ceeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          212 RVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       212 ~~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      .++++||+|| ++.+++|++|++++||.|++||+||++||||++++|+||.+|+|.++++++|+. |++|++|+.|..++
T Consensus         2 iiei~~P~lg-~~~~~~v~~w~v~~Gd~V~~gd~l~~iEt~K~~~~i~a~~~G~i~~i~v~~G~~-v~~G~~l~~ie~~g   79 (81)
T d1gjxa_           2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDK-ISEGGLIVVVEAEG   79 (81)
T ss_dssp             CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCE-ECSSSCCCEECCSC
T ss_pred             cEEEECCCCC-CCcEEEEEEEEeCCCCEECCCCEEEEEEcCCcEEEEEeeeeEEEEEEEeCCCCE-ECCCCEEEEEeccc
Confidence            4689999999 588999999999999999999999999999999999999999999999999999 99999999996543

>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.3e-18  Score=138.62  Aligned_cols=76  Identities=21%  Similarity=0.305  Sum_probs=71.9

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecCC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVEDP  291 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~~  291 (639)
                      ++++||++|.+  +++|++|++++||.|++||+||+|||||++++|+|+.+|+|.++++++|+. |++|++|+.|..++
T Consensus         3 ~ei~~P~lG~~--~~~v~~~~v~~Gd~V~~g~~l~~iEt~K~~~~v~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~eg   78 (80)
T d1qjoa_           3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDK-VKTGSLIMIFEVEG   78 (80)
T ss_dssp             EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCE-ECTTCCCEEEESCC
T ss_pred             eEEECCCCCCC--eEEEEEEEeCCCCEECCCCEEEEEEcCcccceEeCCeeEEEEEEEeCCCCE-ECCCCEEEEEecCc
Confidence            67999999864  799999999999999999999999999999999999999999999999999 99999999997544

>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Lipoyl domain of dihydrolipoamide acetyltransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.67  E-value=5.6e-17  Score=133.57  Aligned_cols=74  Identities=22%  Similarity=0.359  Sum_probs=70.0

Q ss_pred             eeeecCCCCCcccccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEEecC
Q 006594          213 VVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAITVED  290 (639)
Q Consensus       213 ~~~~~P~l~~~~~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i~~~  290 (639)
                      ..++||++|.   +|+|++|++++||.|++||+||+|||||+.++|+|+.+|+|.++++++|+. |++|++|+.|...
T Consensus         2 ~~i~~P~~g~---~g~i~~~~v~~Gd~V~~gd~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~-V~~G~~l~~ie~~   75 (79)
T d1iyua_           2 EIIRVPDIGG---DGEVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDK-LKEGDAIIELEPA   75 (79)
T ss_dssp             EEEECCCCSS---EEEEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCE-EETTSEEEEEECC
T ss_pred             CEEECCCCCC---CEEEEEEEecCCCEEecCceEEEEEecCcEEEEEeccccEEEEEeeCCCCE-ECCCCEEEEEecC
Confidence            3589999994   799999999999999999999999999999999999999999999999999 9999999999644

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.54  E-value=4.7e-15  Score=121.28  Aligned_cols=60  Identities=30%  Similarity=0.428  Sum_probs=59.2

Q ss_pred             EEEEEEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEE
Q 006594          101 GNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAIT  161 (639)
Q Consensus       101 g~v~~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i  161 (639)
                      |+|++|+|++||+|++||+||.||+||+.++|+||++|+|+++++++|+. |..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~-V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCE-ECCCCEEEEe
Confidence            89999999999999999999999999999999999999999999999999 9999999987

>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S)
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=99.47  E-value=5.5e-14  Score=114.80  Aligned_cols=60  Identities=27%  Similarity=0.408  Sum_probs=59.0

Q ss_pred             cccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          227 GNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       227 g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      |+|++|++++||+|++||+||++|+||+.++|+||.+|+|.++++++|+. |..|++|+.|
T Consensus        17 G~v~~~~V~~Gd~V~~G~~l~~vE~~K~~~~i~ap~~G~V~~i~v~~G~~-V~~G~~L~~i   76 (77)
T d1dcza_          17 GTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDA-VQGGQGLIKI   76 (77)
T ss_dssp             CEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCB-CCBTSEEEEE
T ss_pred             cEEEEEEcCCCCEEeCCCeEEEEEccCccEEEEeCCCEEEEEEeeCCCCE-ECCCCEEEEe
Confidence            78999999999999999999999999999999999999999999999999 9999999987

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=3e-13  Score=110.90  Aligned_cols=57  Identities=30%  Similarity=0.482  Sum_probs=55.3

Q ss_pred             EEEecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          105 KWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       105 ~w~v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                      +++|++||+|++||+||.||+||+.++|+||.+|+|+++++++||. |..|++|+.|+
T Consensus        24 ~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~-V~~G~~L~~ie   80 (80)
T d1bdoa_          24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVIE   80 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEEC
T ss_pred             CeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCE-ECCCCEEEEEC
Confidence            6889999999999999999999999999999999999999999999 99999999984

>d1w85i_ a.9.1.1 (I:) E3/E1 binding domain of dihydrolipoyl acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3/E1 binding domain of dihydrolipoyl acetyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.33  E-value=1.8e-13  Score=97.18  Aligned_cols=40  Identities=30%  Similarity=0.413  Sum_probs=38.0

Q ss_pred             ccCChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHh
Q 006594          329 TKISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (639)
Q Consensus       329 ~~asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~  368 (639)
                      +.+||+||+||+|+|||++.|+|||++|||+++||++|++
T Consensus         2 v~asP~arkla~e~gidl~~i~GTG~~GRItk~DV~~~i~   41 (42)
T d1w85i_           2 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA   41 (42)
T ss_dssp             CCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred             cccCHHHHHHHHHcCCCHHHCccCCCCCcEeHHHHHHHhC
Confidence            4689999999999999999999999999999999999974

>d2cyua1 a.9.1.1 (A:2-40) E3-binding domain of dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
superfamily: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
family: Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
domain: E3-binding domain of dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=1.8e-13  Score=95.74  Aligned_cols=38  Identities=37%  Similarity=0.597  Sum_probs=36.4

Q ss_pred             CChhHHhhHHHcCCCcccccccCCCCeeeccchHHHHh
Q 006594          331 ISPSAKLLILEHGLDASSLQASGPYGTLLKGDVLAAIK  368 (639)
Q Consensus       331 asP~ar~lA~e~gIDls~v~gsGp~GrI~~~DV~~~~~  368 (639)
                      +||+||++|+|+|||++.|+|||++|||+|+||++|+.
T Consensus         1 iSP~arkla~e~gidl~~i~GtG~~GRI~k~Dv~~~i~   38 (39)
T d2cyua1           1 LSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA   38 (39)
T ss_dssp             CCCTHHHHHHHHTCCGGGSCCCSSSSCCCHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHCcCCCCCCcEeHHHHHHHHc
Confidence            58999999999999999999999999999999999974

>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Biotinyl domain of acetyl-CoA carboxylase
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=6.3e-12  Score=102.87  Aligned_cols=73  Identities=25%  Similarity=0.407  Sum_probs=62.1

Q ss_pred             eeecCCCCCcc-cccccceeecCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEecCCCCccccCCCeEEEE
Q 006594          214 VLEMPALSPTM-NQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILAPEGSKDVAVGQPIAIT  287 (639)
Q Consensus       214 ~~~~P~l~~~~-~~g~i~~w~v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~~~G~~~v~vG~~l~~i  287 (639)
                      .++.|..|.-+ ....-.+++|++||.|++||+||.||++|+.++|.||.+|+|.++++++|+. |..|++|+.|
T Consensus         6 ~I~aPm~G~~~~~~~p~~~~~V~~Gd~V~~Gq~l~~iEamKm~~~i~a~~~G~v~~i~v~~G~~-V~~G~~L~~i   79 (80)
T d1bdoa_           6 IVRSPMVGTFYRTPSPDAKAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQP-VEFDEPLVVI   79 (80)
T ss_dssp             EEECSSSEEEESSSSTTSCCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCE-ECTTCEEEEE
T ss_pred             EEeCCCcEEEEecCCCCCCeEccCCCeEeCCCEEEEEEcCcccEEEEcCCCeEEEEEEeCCCCE-ECCCCEEEEE
Confidence            45555544332 1233357899999999999999999999999999999999999999999999 9999999987

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.84  E-value=0.00071  Score=58.97  Aligned_cols=46  Identities=15%  Similarity=0.281  Sum_probs=39.7

Q ss_pred             EEEEEEEe-cCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEec
Q 006594          101 GNIAKWRK-KEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVP  146 (639)
Q Consensus       101 g~v~~w~v-~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~  146 (639)
                      |+|+.... ++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-.
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~~   81 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLA   81 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTH
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhhh
Confidence            45555543 88999999999999999999999999999999887654

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.71  E-value=0.00098  Score=58.33  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             EEEEEEE-ecCCCeeecCCeEEEEEcccceeEEecCCceEEEEEEecC
Q 006594          101 GNIAKWR-KKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVPE  147 (639)
Q Consensus       101 g~v~~w~-v~~Gd~V~~g~~l~~ietdK~~~~i~s~~~G~i~~~~v~~  147 (639)
                      |+|+... .++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-..
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~~l   83 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGL   83 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHH
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeehhhh
Confidence            4444444 3789999999999999999999999999999998876543

>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Thermus thermophilus [TaxId: 274]

Probab=96.27  E-value=0.0022  Score=55.65  Aligned_cols=45  Identities=16%  Similarity=0.288  Sum_probs=39.6

Q ss_pred             cccceee-cCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.|+... .++|+.|++|+.++.||+.|+..+|.||.+|+|.++.-
T Consensus        35 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~Vv~vN~   80 (127)
T d1onla_          35 GDVVYVELPEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNL   80 (127)
T ss_dssp             CSEEEEECBCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECT
T ss_pred             cccccccCCCCCchhcCCCceEEEeeccceeeccCCccceEEEEhh
Confidence            5666554 48999999999999999999999999999999988854

>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Single hybrid motif
family: Biotinyl/lipoyl-carrier proteins and domains
domain: Protein H of glycine cleavage system
species: Pea (Pisum sativum) [TaxId: 3888]

Probab=96.16  E-value=0.0027  Score=55.41  Aligned_cols=45  Identities=18%  Similarity=0.224  Sum_probs=39.3

Q ss_pred             cccceee-cCCCCccccCCeeeEeecCcceeeEecCCCeeEEEEec
Q 006594          227 GNIAKWR-KNEGDKIEVGDVICEIETDKATLEFECLEEGYLAKILA  271 (639)
Q Consensus       227 g~i~~w~-v~~Gd~V~~gd~l~~vetdK~~~ei~s~~~G~v~~i~~  271 (639)
                      |.|+... .++|+.|++||.++.||+.|++.++.||.+|+|.++.-
T Consensus        36 G~i~~v~lp~~g~~v~~g~~~~~iEs~k~~~~i~sPv~G~vv~vN~   81 (131)
T d1hpca_          36 GEVVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNT   81 (131)
T ss_dssp             CSEEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECT
T ss_pred             hhheeecCCCCCccccCCCceEEEEeecccccccCCcchhheeehh
Confidence            5565554 47999999999999999999999999999999988853

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.16  E-value=0.0016  Score=61.70  Aligned_cols=63  Identities=29%  Similarity=0.331  Sum_probs=52.5

Q ss_pred             ceEEEEEEEecCCCeeecCCeEEEEEcccc--------------------------------------------------
Q 006594           99 SQGNIAKWRKKEGDKIEIGDILCEIETDKA--------------------------------------------------  128 (639)
Q Consensus        99 ~eg~v~~w~v~~Gd~V~~g~~l~~ietdK~--------------------------------------------------  128 (639)
                      ..|.|.+|+|++||.|++||+|++|+++..                                                  
T Consensus        22 v~G~V~~v~V~~G~~VkkGq~L~~ld~~~~~~~l~~a~a~~~~a~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~a~~~l~  101 (237)
T d1vf7a_          22 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE  101 (237)
T ss_dssp             SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCEEEEEEECCCcCEECCCCEEEEEehHHHHhhhhhhhhhhhhhhhhhhhhhhhhhccccccchhhhhhhhcchhHHHHH
Confidence            579999999999999999999999976432                                                  


Q ss_pred             -------eeEEecCCceEEEEEEecCCCccccCCCcEEEEe
Q 006594          129 -------TVEFESLEEGFLAKILVPEGSKDVPVGQPIAITV  162 (639)
Q Consensus       129 -------~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~  162 (639)
                             ...|.||++|+|.++.+..|+. +..|.....+.
T Consensus       102 ~a~~~l~~~~i~ap~~G~v~~~~~~~g~~-~~~~~~~~~~~  141 (237)
T d1vf7a_         102 QARINLRYTKVLSPISGRIGRSAVTEGAL-VTNGQANAMAT  141 (237)
T ss_dssp             HHHHHHHTTEEECSSSEEECCCSSCBTCE-ECTTCSSCSEE
T ss_pred             HHhhhhcccccccchhceeeeEEeccCcE-EcCCcceeeEE
Confidence                   1225799999999999999999 99987665443

>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Membrane and cell surface proteins and peptides
fold: HlyD-like secretion proteins
superfamily: HlyD-like secretion proteins
family: HlyD-like secretion proteins
domain: Multidrug resistance protein MexA domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.49  E-value=0.013  Score=54.90  Aligned_cols=43  Identities=23%  Similarity=0.252  Sum_probs=36.2

Q ss_pred             EEEEcccceeEEecCCceEEEEEEecCCCccccCCCcEEEEecCC
Q 006594          121 CEIETDKATVEFESLEEGFLAKILVPEGSKDVPVGQPIAITVEDA  165 (639)
Q Consensus       121 ~~ietdK~~~~i~s~~~G~i~~~~v~~g~~~v~~G~~l~~i~~~~  165 (639)
                      ++|+..+ .++|.|+.+|+|.+++|++|+. |+.|++|+.|+..+
T Consensus         8 G~i~a~~-~~~V~s~v~G~V~~v~V~~G~~-VkkGq~L~~ld~~~   50 (237)
T d1vf7a_           8 GRTNAFR-IAEVRPQVNGIILKRLFKEGSD-VKAGQQLYQIDPAT   50 (237)
T ss_dssp             EECEESC-EEEECCSSCEEEEECCSCSSEE-ECTTSEEEEECCHH
T ss_pred             EEEEeeE-EEEEEeecCEEEEEEECCCcCE-ECCCCEEEEEehHH
Confidence            4566533 4689999999999999999999 99999999996543

>d1e2wa2 b.84.2.2 (A:169-232) Cytochrome f, small domain {Chlamydomonas reinhardtii [TaxId: 3055]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=85.36  E-value=1.1  Score=33.24  Aligned_cols=17  Identities=12%  Similarity=0.278  Sum_probs=15.0

Q ss_pred             eeecCCCCccccCCeee
Q 006594          231 KWRKNEGDKIEVGDVIC  247 (639)
Q Consensus       231 ~w~v~~Gd~V~~gd~l~  247 (639)
                      +++|++||.|++||.|.
T Consensus        45 ~l~V~eGd~V~~G~~LT   61 (64)
T d1e2wa2          45 DLIVKEGQTVQADQPLT   61 (64)
T ss_dssp             CBCCCTTCEECTTCBCB
T ss_pred             eEEECCCCEEeCCCccc
Confidence            56799999999999985