Citrus Sinensis ID: 006597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------64
MEHSSEEDSDISESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRKGGIA
ccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHccccccEEccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHcccccccEEEEEEcccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccc
ccccccccccccHHHHHHHHHHHHHHHHcccEEEEccccEEEcccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEcccEEEEEEccccccccccEccccHHHHHHHHHHcccccEEEEEEEcccccEEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHcccccccEEEEEEEHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccEEEEEcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHccccc
mehsseedsdisesemLKYEDKSYKKlksgnhsvkisdeaftcpycpkkrkqEYLYKDLLQHasgvgnstsnkRSAKEKANHLALAKYLEKDlrdagspskpvnegdpltgcshdekfvwpwtgivvniptrraedgrsvgesgSKLRDELIrrgfnptrvhplwnfrghsgcavvefhkdwpglhnamsfEKAYEadhygkkdwyasnqeksGLYAWVARsddynlkniigdhlrkiGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVmkhmgddgdIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIglkrmgeldnkpfLEVMNRKYNEEEAEERASELCSLWEeylkdpdwhpfkvitaegkhkeiINEEDEKLKGLKKEMGEEVYIAVTTALVEineynpsgryitSELWNYKEGRKATLQEGVAFLMKQWKLLVHRKGGIA
mehsseedsdiseseMLKYEDKSYKKLKsgnhsvkisdeaftcpycPKKRKQEYLYKDLLQHASgvgnstsnkrsaKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVvniptrraedgrsvgesgsklrdeliRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKqnllvsnltNMIEVKDKHLEEMKERFtetsnsvekLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELElrgeelekretqnendrKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKhmgddgdieVLQKMETVLKDLrekegelddlealnqtliirerksndelqDARKELINALKElsgrahiglkrmgeldnkpfLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVItaegkhkeiineEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLvhrkggia
MehsseedsdiseseMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHeklklqlesqkkelelrgeelekreTQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNeeeaeeraseLCSLWEEYLKDPDWHPFKVITAEGKHKEIINeedeklkglkkemgeeVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRKGGIA
*************************************DEAFTCPYCPKKRKQEYLYKDLLQ*************************************************GCSHDEKFVWPWTGIVVNIPT*******************LIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTI*************LVSNLT********************************************IQLSARDHFQRIFT**********************************************************************************IIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVL***************LNQTLII**************************AHIGLK**********L*****************ELCSLWEEYLKDPDWHPFKVITAEGKHKEII***********KEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHR*****
*****************KYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHA********************AL******************************EKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYN********************************************************************************************************************************************************************************************************************************************************************************************************************************WH***********************GLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKL*********
***************MLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASG***************NHLALAKYLEKD**************DPLTGCSHDEKFVWPWTGIVVNIPTRR***********SKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGE**********NDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYN**********LCSLWEEYLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRKGGIA
***********SESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDA****************SHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVH******
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MEHSSEEDSDISESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARDHFQRIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRKILAEEIEKNAMRNNSLQLASLVQQKADENVRKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKGSLNVMKHMGDDGDIEVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRKGGIA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query639 2.2.26 [Sep-21-2011]
Q9LDX1625 Protein SUPPRESSOR OF GEN no no 0.544 0.556 0.223 0.0003
>sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1 Back     alignment and function desciption
 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 165/407 (40%), Gaps = 59/407 (14%)

Query: 41  FTCPYCPKKRKQEYLYK--DLLQHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGS 98
           + CP C         Y    LL HA   G        A+    H  LA+ LEKDL+  G+
Sbjct: 226 WHCPACQNGPGAIDWYNLHPLLAHARTKG--------ARRVKLHRELAEVLEKDLQMRGA 277

Query: 99  PSKPVNE-GDPLTGCSHDEK---FVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRR 154
              P  E      G   DEK    VWP   I++N    + ++ + +G    +L +   + 
Sbjct: 278 SVIPCGEIYGQWKGLGEDEKDYEIVWPPMVIIMNTRLDKDDNDKWLGMGNQELLEYFDK- 336

Query: 155 GFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSG 214
            +   R    +  +GH G +V+ F     G   A    +        +  W       SG
Sbjct: 337 -YEALRARHSYGPQGHRGMSVLMFESSATGYLEAERLHRELAEMGLDRIAWGQKRSMFSG 395

Query: 215 ----LYAWVARSDDYNLKNIIGDHLRKIG-DLKTISEMMEEEARK---QNLLVSNLTNMI 266
               LY ++A   D ++ N       ++  +LK+  EM+ +E R+    N  ++   N +
Sbjct: 396 GVRQLYGFLATKQDLDIFNQHSQGKTRLKFELKSYQEMVVKELRQISEDNQQLNYFKNKL 455

Query: 267 EVKDKH-------LEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLSARDHFQRI 319
             ++KH       LE M E+   T+    +++ ++ ++    N E    ++ A D F   
Sbjct: 456 SKQNKHAKVLEESLEIMSEKLRRTAED-NRIVRQRTKMQHEQNRE----EMDAHDRF--- 507

Query: 320 FTD-----HEKL-----KLQLESQKKELELRGEELEKRETQNENDRKILAEEIEKNAMRN 369
           F D     HE+        ++  Q++  ++ G++ +     + +D +  AEE+      +
Sbjct: 508 FMDSIKQIHERRDAKEENFEMLQQQERAKVVGQQQQNINPSSNDDCRKRAEEV------S 561

Query: 370 NSLQLASLVQQKADENVRKLAEDQKKQKEDL----HNRIIQLEKQLD 412
           + ++      ++  E    L +DQ+K+ ED+    H  I  LEK+ D
Sbjct: 562 SFIEFQEKEMEEFVEEREMLIKDQEKKMEDMKKRHHEEIFDLEKEFD 608
Required for post-transcriptional gene silencing and natural virus resistance. May bind nucleic acids and is essential for the biogenesis of trans-acting siRNAs but is not required for silencing induced by IR-PTGS. Involved in the juvenile-to-adult transition regulation. In case of begomoviruses infection, it is targeted by the viral protein V2 leading to suppression of post-transcriptional gene silencing.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query639
255584877640 conserved hypothetical protein [Ricinus 0.992 0.990 0.754 0.0
225449483641 PREDICTED: uncharacterized protein LOC10 0.959 0.956 0.733 0.0
224112749721 predicted protein [Populus trichocarpa] 0.943 0.836 0.700 0.0
356539854640 PREDICTED: uncharacterized protein LOC10 0.992 0.990 0.687 0.0
449459906643 PREDICTED: uncharacterized protein LOC10 0.954 0.948 0.714 0.0
356523864654 PREDICTED: uncharacterized protein LOC10 0.995 0.972 0.641 0.0
356561201635 PREDICTED: uncharacterized protein LOC10 0.971 0.977 0.659 0.0
356499107 1172 PREDICTED: uncharacterized protein LOC10 0.995 0.542 0.642 0.0
356553836 1154 PREDICTED: uncharacterized protein LOC10 0.995 0.551 0.635 0.0
449503267631 PREDICTED: uncharacterized LOC101219429 0.848 0.858 0.717 0.0
>gi|255584877|ref|XP_002533154.1| conserved hypothetical protein [Ricinus communis] gi|223527049|gb|EEF29235.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/635 (75%), Positives = 565/635 (88%), Gaps = 1/635 (0%)

Query: 1   MEHSSEEDSDISESEMLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLL 60
           ++HSS+ED+D+SESE+ +YE + Y++LK+G H VKISDE FTCPYCPKKRK+EYLY+DLL
Sbjct: 5   VDHSSDEDTDMSESELDEYEAQCYEELKNGTHHVKISDETFTCPYCPKKRKREYLYRDLL 64

Query: 61  QHASGVGNSTSNKRSAKEKANHLALAKYLEKDLRDAGSPSKPVNEGDPLTGCSHDEKFVW 120
           QHASGVG S S KRS KEKANHLAL KYLEKD+ D GSPSKP  E DPL  C+HDEK VW
Sbjct: 65  QHASGVGRSASKKRSTKEKANHLALVKYLEKDIADLGSPSKPKGESDPLDSCNHDEKIVW 124

Query: 121 PWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHK 180
           PWTGIV+NIPT +A DGR VG SGSK RDELI RGFNPTRVHPLWN+RGHSG AVVEFHK
Sbjct: 125 PWTGIVINIPTTKAPDGRFVGASGSKFRDELISRGFNPTRVHPLWNYRGHSGSAVVEFHK 184

Query: 181 DWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGD 240
           DWPGLHNA+SFEKAYEADH+GKKD++ +  EKSG+Y WVAR+DDY   NIIGDHLRK GD
Sbjct: 185 DWPGLHNALSFEKAYEADHHGKKDYFTTG-EKSGVYCWVARADDYKADNIIGDHLRKTGD 243

Query: 241 LKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQS 300
           LKTISE+MEEEARKQ+ L+SNL N+IE+K+KH++EM+++F+ETS S+ KLMEEKDRLLQ+
Sbjct: 244 LKTISEIMEEEARKQDKLISNLNNIIEIKNKHIQEMQDKFSETSVSLNKLMEEKDRLLQA 303

Query: 301 YNEEIKKIQLSARDHFQRIFTDHEKLKLQLESQKKELELRGEELEKRETQNENDRKILAE 360
           YNEEI+KIQ+SAR+HFQ+IF DHEKLKLQ++SQK+ELE+RG ELEKRE +NENDR+ L+E
Sbjct: 304 YNEEIRKIQMSAREHFQKIFNDHEKLKLQVDSQKRELEMRGSELEKREAKNENDRRKLSE 363

Query: 361 EIEKNAMRNNSLQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALE 420
           EIEKNA+RN+SLQLA+  QQKADENV KLAEDQK+QKE+LHNRIIQL+KQLDAKQAL LE
Sbjct: 364 EIEKNAIRNSSLQLAAFEQQKADENVLKLAEDQKRQKEELHNRIIQLQKQLDAKQALELE 423

Query: 421 IERLKGSLNVMKHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDE 480
           IERL+G+LNVMKHMGDDGD+EVLQKMET++++LREKEGEL+DLE LNQ LI+ ERKSNDE
Sbjct: 424 IERLRGTLNVMKHMGDDGDVEVLQKMETIIQNLREKEGELEDLETLNQALIVSERKSNDE 483

Query: 481 LQDARKELINALKELSGRAHIGLKRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEE 540
           LQ+ARKELIN LKE+S RA IG+KRMGELD+KPFLE M RKY EEEAE RASELCSLW E
Sbjct: 484 LQEARKELINGLKEISNRAQIGVKRMGELDSKPFLEAMKRKYTEEEAEVRASELCSLWVE 543

Query: 541 YLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGR 600
           YLKDP WHPFKV   +GK+KE+I+++DEKL GLK E+G+EVY AVT A+ EIN+YNPSGR
Sbjct: 544 YLKDPGWHPFKVAMVDGKNKEVIDDKDEKLNGLKDELGDEVYKAVTDAVKEINDYNPSGR 603

Query: 601 YITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRK 635
           YITSELWNYKE +KATL+EGV+FL+KQW++   R+
Sbjct: 604 YITSELWNYKEEKKATLKEGVSFLLKQWQIAKRRR 638

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225449483|ref|XP_002278500.1| PREDICTED: uncharacterized protein LOC100244410 [Vitis vinifera] gi|296086223|emb|CBI31664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112749|ref|XP_002316281.1| predicted protein [Populus trichocarpa] gi|222865321|gb|EEF02452.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356539854|ref|XP_003538408.1| PREDICTED: uncharacterized protein LOC100812353 [Glycine max] Back     alignment and taxonomy information
>gi|449459906|ref|XP_004147687.1| PREDICTED: uncharacterized protein LOC101219429 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356523864|ref|XP_003530554.1| PREDICTED: uncharacterized protein LOC100806029 [Glycine max] Back     alignment and taxonomy information
>gi|356561201|ref|XP_003548872.1| PREDICTED: uncharacterized protein LOC100786758 [Glycine max] Back     alignment and taxonomy information
>gi|356499107|ref|XP_003518385.1| PREDICTED: uncharacterized protein LOC100806426 [Glycine max] Back     alignment and taxonomy information
>gi|356553836|ref|XP_003545257.1| PREDICTED: uncharacterized protein LOC100790814 [Glycine max] Back     alignment and taxonomy information
>gi|449503267|ref|XP_004161917.1| PREDICTED: uncharacterized LOC101219429 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query639
TAIR|locus:2114560647 IDN2 "AT3G48670" [Arabidopsis 0.971 0.959 0.533 3.9e-179
TAIR|locus:2014754736 FDM4 "AT1G13790" [Arabidopsis 0.794 0.690 0.418 7.1e-126
TAIR|locus:2200487634 FDM1 "factor of DNA methylatio 0.953 0.960 0.389 4.1e-113
TAIR|locus:2825160634 FDM5 "factor of DNA methylatio 0.953 0.960 0.391 3.6e-112
TAIR|locus:2126081635 FDM2 "AT4G00380" [Arabidopsis 0.956 0.962 0.390 2.3e-110
TAIR|locus:2148323561 AT5G59390 [Arabidopsis thalian 0.790 0.900 0.381 4.3e-93
TAIR|locus:2125078554 AT4G01180 "AT4G01180" [Arabido 0.785 0.906 0.366 3.2e-88
TAIR|locus:2045121179 AT2G16490 "AT2G16490" [Arabido 0.147 0.525 0.270 1.8e-08
TAIR|locus:2171716625 SGS3 "SUPPRESSOR OF GENE SILEN 0.539 0.552 0.206 5.7e-07
ZFIN|ZDB-GENE-030131-8984 4762 pleca "plectin a" [Danio rerio 0.414 0.055 0.225 1.1e-06
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1739 (617.2 bits), Expect = 3.9e-179, P = 3.9e-179
 Identities = 336/630 (53%), Positives = 437/630 (69%)

Query:    16 MLKYEDKSYKKLKSGNHSVKISDEAFTCPYCPKKRKQEYLYKDLLQHASGVGNSTSNKRS 75
             M +Y DK Y  LK G   V++S +AF CPYCP K+K  + YKDLLQHASGVGNS S+KRS
Sbjct:    21 MDEYGDKMYLNLKGGKLKVRLSPQAFICPYCPNKKKTSFQYKDLLQHASGVGNSNSDKRS 80

Query:    76 AKEKANHLALAKYLEKDLRDAGSPSKPVNE----GDPLTGCSHDEKFVWPWTGIVVNIPT 131
             AKEKA+HLAL KYL++DL D+ S ++P ++    G+P+  C HDEK V+PW GIVVNIPT
Sbjct:    81 AKEKASHLALVKYLQQDLADSASEAEPSSKRQKNGNPIQDCDHDEKLVYPWKGIVVNIPT 140

Query:   132 RRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF 191
              +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ GHSG A+VEF+KDW GLHN + F
Sbjct:   141 TKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF 200

Query:   192 EKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEE 251
             +KAY  D +GKKDW   +  K GLY W+AR+DDYN  NIIG++LRK GDLKTI+E+ EEE
Sbjct:   201 DKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEE 260

Query:   252 ARKQNLLVSNLTNMIEVKDKHLEEMKERFTETSNSVEKLMEEKDRLLQSYNEEIKKIQLS 311
             ARKQ LLV NL  ++E K K ++E++E  +  S  + +LMEEK++  Q +  E+  IQ  
Sbjct:   261 ARKQELLVQNLRQLVEEKKKDMKEIEELCSVKSEELNQLMEEKEKNQQKHYRELNAIQER 320

Query:   312 ARDHFQRIFTDHXXXXXXXXXXXXXXXXXXXXXXXXXTQNENDRKILAEEIEKNAMRNNS 371
                H Q+I  DH                           N  +R  L+E++E+NA +N+S
Sbjct:   321 TMSHIQKIVDDHEKLKRLLESERKKLEIKCNELAKREVHNGTERMKLSEDLEQNASKNSS 380

Query:   372 LQLASLVQQKADENVRKLAEDQKKQKEDLHNRIIQLEKQLDAKQALALEIERLKGSLNVM 431
             L+LA++ QQKADE V+KLAEDQ++QKE+LH +II+LE+Q D KQA+ LE+E+LKG LNVM
Sbjct:   381 LELAAMEQQKADEEVKKLAEDQRRQKEELHEKIIRLERQRDQKQAIELEVEQLKGQLNVM 440

Query:   432 KHMGDDGDIEVLQKMETVLKDLREKEGELDDLEALNQTLIIRERKSNDELQDARKELINA 491
             KHM  DGD EV+++++ + KDL EKE +L DL+  NQTLI+RER++NDELQ+A KEL+N 
Sbjct:   441 KHMASDGDAEVVKEVDIIFKDLGEKEAQLADLDKFNQTLILRERRTNDELQEAHKELVNI 500

Query:   492 LKELSGRAHIGLKRMGELDNKPFLEVMNRKYNXXXXXXXXXXLCSLWEEYLKDPDWHPFK 551
             +KE +   +IG+KRMGEL  KPF++ M +KY           +  LWE YLKD DWHPFK
Sbjct:   501 MKEWN--TNIGVKRMGELVTKPFVDAMQQKYCQQDVEDRAVEVLQLWEHYLKDSDWHPFK 558

Query:   552 VITAEGKHKEI--INXXXXXXXXXXXXXXXXVYIAVTTALVEINEYNPSGRYITSELWNY 609
              +  E + +E+  I+                 Y AVT AL+EINEYNPSGRYIT+ELWN+
Sbjct:   559 RVKLENEDREVEVIDDRDEKLRELKADLGDGPYNAVTKALLEINEYNPSGRYITTELWNF 618

Query:   610 KEGRKATLQEGVAFLMKQWKLLVHRKGGIA 639
             K  +KATL+EGV  L+ QW+    RK G+A
Sbjct:   619 KADKKATLEEGVTCLLDQWEK-AKRKRGMA 647
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0006306 "DNA methylation" evidence=IGI;IMP
GO:0006342 "chromatin silencing" evidence=IGI
TAIR|locus:2014754 FDM4 "AT1G13790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200487 FDM1 "factor of DNA methylation 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825160 FDM5 "factor of DNA methylation 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126081 FDM2 "AT4G00380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045121 AT2G16490 "AT2G16490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171716 SGS3 "SUPPRESSOR OF GENE SILENCING 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-8984 pleca "plectin a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018471001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (641 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query639
pfam03469132 pfam03469, XH, XH domain 1e-52
pfam03468116 pfam03468, XS, XS domain 2e-46
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 2e-39
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 1e-17
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-10
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 6e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-07
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 6e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 8e-05
pfam024631162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 9e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 3e-04
COG3206458 COG3206, GumC, Uncharacterized protein involved in 3e-04
pfam01496 707 pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni 6e-04
pfam02463 1162 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain 8e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
pfam14362297 pfam14362, DUF4407, Domain of unknown function (DU 0.002
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.003
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.004
pfam05622 713 pfam05622, HOOK, HOOK protein 0.004
pfam04849307 pfam04849, HAP1_N, HAP1 N-terminal conserved regio 0.004
>gnl|CDD|217579 pfam03469, XH, XH domain Back     alignment and domain information 
 Score =  176 bits (449), Expect = 1e-52
 Identities = 88/132 (66%), Positives = 105/132 (79%)

Query: 504 KRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKEII 563
           KRMGELD KPFL+   RKY EE+AE RA+ELCSLWEE +KDPDWHPFKV+      KE++
Sbjct: 1   KRMGELDLKPFLKACKRKYVEEDAEVRAAELCSLWEENIKDPDWHPFKVVETGEIEKEVV 60

Query: 564 NEEDEKLKGLKKEMGEEVYIAVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAF 623
           +E+DEKLK LK+E GEEVY AV  AL+E+NEYNPSGRY T ELWN+KEGRKATL+E V F
Sbjct: 61  DEDDEKLKKLKEEWGEEVYNAVKKALLEMNEYNPSGRYPTPELWNFKEGRKATLKEVVDF 120

Query: 624 LMKQWKLLVHRK 635
           L+ Q K L  ++
Sbjct: 121 LLNQLKALKRKR 132

The XH (rice gene X Homology) domain is found in a family of plant proteins including gene X. The molecular function of these proteins is unknown. However these proteins usually contain an XS domain that is also found in the PTGS protein SGS3. This domain contains a conserved glutamate residue that may be functionally important. Length = 132
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family Back     alignment and domain information
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407) Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein Back     alignment and domain information
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 639
PF03469132 XH: XH domain; InterPro: IPR005379 The XH (rice ge 100.0
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.71
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.78
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.64
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.48
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.38
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.35
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.21
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.05
PRK11637428 AmiB activator; Provisional 96.0
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 95.85
KOG0996 1293 consensus Structural maintenance of chromosome pro 95.83
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 95.77
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.7
PRK11637428 AmiB activator; Provisional 95.38
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 95.33
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 95.14
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 94.82
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.5
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 94.41
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.38
COG11961163 Smc Chromosome segregation ATPases [Cell division 94.38
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 94.25
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 94.07
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 94.03
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 93.7
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.62
PF15066527 CAGE1: Cancer-associated gene protein 1 family 93.61
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 92.76
KOG0933 1174 consensus Structural maintenance of chromosome pro 92.58
PHA02562562 46 endonuclease subunit; Provisional 92.54
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 92.44
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 92.0
PRK02224 880 chromosome segregation protein; Provisional 91.8
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 91.59
KOG0964 1200 consensus Structural maintenance of chromosome pro 90.54
KOG05791187 consensus Ste20-like serine/threonine protein kina 90.45
PRK02224 880 chromosome segregation protein; Provisional 90.32
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 89.54
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 89.22
PRK09039343 hypothetical protein; Validated 89.17
KOG09331174 consensus Structural maintenance of chromosome pro 89.04
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 88.52
PF05701522 WEMBL: Weak chloroplast movement under blue light; 88.25
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 88.11
KOG4572 1424 consensus Predicted DNA-binding transcription fact 88.03
PF05010207 TACC: Transforming acidic coiled-coil-containing p 87.87
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 87.8
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 87.54
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 87.31
KOG1937521 consensus Uncharacterized conserved protein [Funct 86.6
KOG0971 1243 consensus Microtubule-associated protein dynactin 86.53
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 86.39
PF05701522 WEMBL: Weak chloroplast movement under blue light; 86.38
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 86.01
PF15272196 BBP1_C: Spindle pole body component BBP1, C-termin 85.72
KOG0962 1294 consensus DNA repair protein RAD50, ABC-type ATPas 84.92
KOG0249 916 consensus LAR-interacting protein and related prot 84.69
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 84.66
PF0007670 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or 84.34
PF13851201 GAS: Growth-arrest specific micro-tubule binding 83.89
PRK04778569 septation ring formation regulator EzrA; Provision 83.85
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 83.55
PHA02562562 46 endonuclease subunit; Provisional 83.07
PF05483786 SCP-1: Synaptonemal complex protein 1 (SCP-1); Int 82.68
PRK04863 1486 mukB cell division protein MukB; Provisional 82.48
KOG0971 1243 consensus Microtubule-associated protein dynactin 82.03
KOG0977546 consensus Nuclear envelope protein lamin, intermed 82.02
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 81.49
KOG0979 1072 consensus Structural maintenance of chromosome pro 81.12
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 81.1
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=4.9e-65  Score=471.20  Aligned_cols=132  Identities=68%  Similarity=1.166  Sum_probs=131.3

Q ss_pred             eecCCCCChHHHHHHHhhcChhhHHHHHHHHHHHHHhhhcCCCCcccEEEEeCCccccccccccHHHHHHHHHhcHHHHH
Q 006597          504 KRMGELDNKPFLEVMNRKYNEEEAEERASELCSLWEEYLKDPDWHPFKVITAEGKHKEIINEEDEKLKGLKKEMGEEVYI  583 (639)
Q Consensus       504 KrmGeld~kpF~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~WhPFk~v~v~g~~keii~edD~kL~~Lk~e~Geev~~  583 (639)
                      ||||+||.+||+.||++||++++|+++|++|||+||++|+||+|||||||+++|+.++|||+||+||++||++||+|||+
T Consensus         1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~g~~~evi~edDekL~~Lk~e~Geevy~   80 (132)
T PF03469_consen    1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVDGKEKEVIDEDDEKLQELKEEWGEEVYN   80 (132)
T ss_pred             CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccCCcccccccCchHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcccccccccccCcccchHHHHHHHHHHHHHhhhhc
Q 006597          584 AVTTALVEINEYNPSGRYITSELWNYKEGRKATLQEGVAFLMKQWKLLVHRK  635 (639)
Q Consensus       584 aV~~Al~E~neyN~sgry~v~eLWN~ke~rkAtl~E~v~~~~~~~k~~k~kr  635 (639)
                      ||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus        81 aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr  132 (132)
T PF03469_consen   81 AVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR  132 (132)
T ss_pred             HHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999997

The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms] Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal Back     alignment and domain information
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>PF00076 RRM_1: RNA recognition motif Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query639
4e8u_A172 Crystal Structure Of Arabidopsis Idn2 Xs Domain Alo 4e-64
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With A Small Segment Of Adjacent Coiled-Coil Region Length = 172 Back     alignment and structure 
Iteration: 1

 Score =  242 bits (618), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/167 (66%), Positives = 133/167 (79%)
Query: 112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHS 171
           C HDEK V+PW GIVVNIPT +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ GHS
Sbjct: 3   CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHS 62
Query: 172 GCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNII 231
           G A+VEF+KDW GLHN + F+KAY  D +GKKDW   +  K GLY W+AR+DDYN  NII
Sbjct: 63  GTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNII 122
Query: 232 GDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKE 278
           G++LRK GDLKTI+E+ EEEARKQ LLV NL  ++E K K ++E++E
Sbjct: 123 GENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEE 169

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query639
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 4e-69
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-13
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-09
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 5e-06
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 4e-05
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-05
2xs1_A704 Programmed cell death 6-interacting protein; prote 4e-04
1sjj_A863 Actinin; 3-helix bundle, calponin homology domain, 5e-04
2qag_B427 Septin-6, protein NEDD5; cell cycle, cell division 6e-04
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 6e-04
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  221 bits (564), Expect = 4e-69
 Identities = 111/170 (65%), Positives = 134/170 (78%)

Query: 110 TGCSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRG 169
           + C HDEK V+PW GIVVNIPT +A+DGRS GESGSKLRDE I RGFNPTRV PLWN+ G
Sbjct: 1   SDCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG 60

Query: 170 HSGCAVVEFHKDWPGLHNAMSFEKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKN 229
           HSG A+VEF+KDW GLHN + F+KAY  D +GKKDW   +  K GLY W+AR+DDYN  N
Sbjct: 61  HSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNN 120

Query: 230 IIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDKHLEEMKER 279
           IIG++LRK GDLKTI+E+ EEEARKQ LLV NL  ++E K K ++E++E 
Sbjct: 121 IIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEEL 170
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query639
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 95.17
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.94
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.5
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 92.04
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.48
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 88.68
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 88.15
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.01
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 87.96
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 87.09
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 86.48
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 86.28
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 85.96
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 85.65
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 85.43
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 85.39
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 84.28
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 83.7
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 83.29
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 82.92
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 82.74
1x4a_A109 Splicing factor, arginine/serine-rich 1 (splicing 82.47
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 82.18
2e5j_A97 Methenyltetrahydrofolate synthetase domain contain 82.03
3d2w_A89 TAR DNA-binding protein 43; DP-43 proteinopathy, T 81.54
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 80.75
2hgn_A139 Heterogeneous nuclear ribonucleoprotein F; RNA rec 80.63
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 80.04
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=3.9e-65  Score=489.15  Aligned_cols=170  Identities=65%  Similarity=1.136  Sum_probs=162.1

Q ss_pred             CCCCceeeecceEEEeeccccccCCCcccccCchhHHHHHHhcCCCCcccccccCCCCCceeEEEeeCCChhchHhHHHH
Q 006597          112 CSHDEKFVWPWTGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPTRVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSF  191 (639)
Q Consensus       112 ~~~de~iVWPwmgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~f  191 (639)
                      |+++++|||||||||+||||++.+||+++|+|+++|+++|+.+||+|++|+||||++||+|+|||+|++||+||+||++|
T Consensus         3 ~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~f   82 (172)
T 4e8u_A            3 CDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLF   82 (172)
T ss_dssp             ---CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHH
T ss_pred             CCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHH
Confidence            78899999999999999999666899999999999999997778999999999999999999999999999999999999


Q ss_pred             HHHhhhcCCChhhhhhhccCCCcceeeeeccCCCCCCCcchhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006597          192 EKAYEADHYGKKDWYASNQEKSGLYAWVARSDDYNLKNIIGDHLRKIGDLKTISEMMEEEARKQNLLVSNLTNMIEVKDK  271 (639)
Q Consensus       192 ek~Fe~~~~GRkdW~~~~~~~~~LYGWvAradDy~~~~~iG~~LrK~gdLKTi~ei~~E~~rk~~~lv~~L~n~I~~knk  271 (639)
                      |+||+.+||||+||.+++..+++|||||||+|||++.||||+||||+||||||+||++|++|++++||++|+++|++||+
T Consensus        83 ek~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn~  162 (172)
T 4e8u_A           83 DKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKK  162 (172)
T ss_dssp             HHHHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988777999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhh
Q 006597          272 HLEEMKERFT  281 (639)
Q Consensus       272 ~l~elE~k~~  281 (639)
                      ||++||++||
T Consensus       163 ~l~ele~k~~  172 (172)
T 4e8u_A          163 DMKEIEELCS  172 (172)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHhhC
Confidence            9999999996
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query639
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.36
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 91.05
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 89.61
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 88.91
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 88.55
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 87.65
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 86.45
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 86.3
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 86.08
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 85.34
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 84.24
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 84.11
d1uawa_77 Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} 81.21
d1no8a_78 Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1 80.98
d2msta_75 Neural RNA-binding protein Musashi-1 {Mouse (Mus m 80.81
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 80.23
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.019  Score=45.11  Aligned_cols=60  Identities=20%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             eEEEeeccccccCCCcccccCchhHHHHHHhcCCCCc-ccccccCCCCCceeEEEeeCCChhchHhHHHHHHH
Q 006597          123 TGIVVNIPTRRAEDGRSVGESGSKLRDELIRRGFNPT-RVHPLWNFRGHSGCAVVEFHKDWPGLHNAMSFEKA  194 (639)
Q Consensus       123 mgII~Ni~t~e~~dg~~~G~s~~~L~d~f~~~GF~p~-kv~~l~~~~Gh~G~aVV~F~~dw~Gf~nA~~fek~  194 (639)
                      ++.|-|+|.         ..+...|++.|+.  |.+. .++...++.+++|+|.|+|. +-..-..|+.++++
T Consensus         2 tv~V~nlp~---------~~t~~~l~~~F~~--~G~I~~v~~~~~~~~~~~~afV~F~-~~~~a~~Al~~~~~   62 (75)
T d2ghpa2           2 TVLVKNLPK---------SYNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFA-RYDGALAAITKTHK   62 (75)
T ss_dssp             EEEEEEECT---------TCCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEES-SHHHHHHHHTTTTC
T ss_pred             EEEEECCCC---------CCCHHHHHHHHhc--CCceEEEEEEeeccccceEEEEEEc-chHHhHHHHHhcCc
Confidence            578899996         5688999999999  7664 47777889999999999994 46666777766544
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure